Query 034278
Match_columns 99
No_of_seqs 108 out of 545
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 11:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3430 Dynein light chain typ 100.0 1.5E-42 3.1E-47 219.0 11.4 90 1-91 1-90 (90)
2 PTZ00059 dynein light chain; P 100.0 1.1E-41 2.3E-46 217.6 12.1 89 1-91 2-90 (90)
3 PF01221 Dynein_light: Dynein 100.0 1E-40 2.3E-45 212.1 9.5 89 1-91 1-89 (89)
4 PLN03058 dynein light chain ty 100.0 3.5E-40 7.6E-45 221.9 12.5 93 3-95 33-126 (128)
5 PF04155 Ground-like: Ground-l 97.7 0.00075 1.6E-08 41.3 8.4 53 36-89 23-76 (76)
6 PF05075 DUF684: Protein of un 92.4 1.4 3E-05 34.1 8.6 54 38-91 189-252 (345)
7 PF15650 Tox-REase-9: Restrict 81.7 1.3 2.7E-05 28.2 2.0 18 44-61 70-87 (89)
8 PF12006 DUF3500: Protein of u 81.5 11 0.00024 28.9 7.5 51 8-62 216-267 (313)
9 PF08776 VASP_tetra: VASP tetr 74.7 7.9 0.00017 21.1 3.6 32 15-50 6-37 (40)
10 KOG2451 Aldehyde dehydrogenase 67.6 13 0.00028 30.0 4.8 46 4-49 49-94 (503)
11 PF12652 CotJB: CotJB protein; 66.1 3.5 7.6E-05 25.5 1.1 15 41-55 42-56 (78)
12 cd03472 Rieske_RO_Alpha_BPDO_l 63.1 18 0.00038 23.9 4.2 39 48-91 1-40 (128)
13 PF10703 MoaF: Molybdenum cofa 61.4 17 0.00037 27.4 4.3 38 55-95 182-220 (265)
14 PF13742 tRNA_anti_2: OB-fold 61.3 32 0.00068 21.6 5.0 51 38-92 5-61 (99)
15 PF12362 DUF3646: DNA polymera 61.1 11 0.00023 25.0 2.9 29 37-65 48-76 (117)
16 PRK00286 xseA exodeoxyribonucl 60.7 27 0.00057 27.6 5.5 49 38-92 9-63 (438)
17 PF06150 ChaB: ChaB; InterPro 57.7 31 0.00066 19.9 4.1 46 11-57 7-54 (57)
18 PF07742 BTG: BTG family; Int 55.4 12 0.00026 24.7 2.4 20 38-57 28-47 (118)
19 TIGR02084 leud 3-isopropylmala 54.8 12 0.00027 25.9 2.4 33 37-69 26-62 (156)
20 cd01579 AcnA_Bact_Swivel Bacte 54.4 11 0.00024 25.1 2.0 32 38-69 26-63 (121)
21 cd03538 Rieske_RO_Alpha_AntDO 52.4 46 0.00099 22.4 4.9 44 43-91 10-54 (146)
22 PF10440 WIYLD: Ubiquitin-bind 50.2 27 0.00059 20.9 3.1 42 21-64 10-51 (65)
23 PF08006 DUF1700: Protein of u 49.1 47 0.001 22.8 4.7 39 11-49 15-65 (181)
24 PF14900 DUF4493: Domain of un 46.2 55 0.0012 23.5 4.8 37 46-82 119-160 (235)
25 PRK14023 homoaconitate hydrata 43.4 31 0.00067 24.1 3.0 32 38-69 29-64 (166)
26 TIGR00237 xseA exodeoxyribonuc 43.3 96 0.0021 24.7 6.1 49 38-92 3-57 (432)
27 PF12550 GCR1_C: Transcription 42.2 8.1 0.00018 23.6 -0.1 12 46-57 29-40 (81)
28 PF11858 DUF3378: Domain of un 41.1 43 0.00094 20.6 3.1 21 72-92 29-49 (81)
29 cd03545 Rieske_RO_Alpha_OHBDO_ 39.5 1.1E+02 0.0025 20.5 5.3 44 42-90 11-56 (150)
30 PF08958 DUF1871: Domain of un 39.3 27 0.00059 21.6 2.0 29 24-54 26-54 (79)
31 TIGR01916 F420_cofE F420-0:gam 38.5 40 0.00087 25.2 3.1 33 36-68 123-155 (243)
32 PF06057 VirJ: Bacterial virul 38.1 33 0.00073 24.7 2.6 31 38-68 48-81 (192)
33 PRK13007 succinyl-diaminopimel 38.0 1.7E+02 0.0036 21.7 6.7 39 13-51 1-40 (352)
34 COG1570 XseA Exonuclease VII, 37.5 55 0.0012 26.6 3.9 51 38-92 9-63 (440)
35 TIGR03849 arch_ComA phosphosul 36.1 1.3E+02 0.0027 22.4 5.4 49 10-61 94-154 (237)
36 PF02881 SRP54_N: SRP54-type p 35.2 76 0.0016 18.4 3.5 21 10-30 36-57 (75)
37 PRK13293 F420-0--gamma-glutamy 34.9 49 0.0011 24.7 3.1 31 36-66 124-154 (245)
38 PF06457 Ectatomin: Ectatomin; 34.5 72 0.0016 16.5 3.4 13 38-50 22-34 (34)
39 PRK06489 hypothetical protein; 34.0 26 0.00057 26.4 1.6 33 38-70 136-169 (360)
40 PF05184 SapB_1: Saposin-like 33.9 68 0.0015 16.1 3.6 29 17-47 6-34 (39)
41 PF15571 Imm25: Immunity prote 33.8 28 0.00062 23.4 1.5 25 37-61 17-41 (124)
42 cd01674 Homoaconitase_Swivel H 33.3 42 0.00091 22.8 2.3 34 37-70 24-61 (129)
43 cd00197 VHS_ENTH_ANTH VHS, ENT 33.1 38 0.00083 21.4 2.0 22 35-59 33-54 (115)
44 PF10925 DUF2680: Protein of u 33.0 94 0.002 18.0 3.5 15 38-52 35-49 (59)
45 COG1352 CheR Methylase of chem 32.6 48 0.0011 24.9 2.8 49 4-58 128-178 (268)
46 PF01996 F420_ligase: F420-0:G 32.3 28 0.00061 25.4 1.4 31 35-65 130-160 (228)
47 COG1999 Uncharacterized protei 32.1 97 0.0021 22.1 4.2 56 38-93 116-192 (207)
48 PF06925 MGDG_synth: Monogalac 32.1 52 0.0011 22.2 2.7 27 38-64 2-28 (169)
49 KOG3252 Uncharacterized conser 31.6 79 0.0017 23.1 3.6 34 13-47 2-35 (217)
50 PF03869 Arc: Arc-like DNA bin 31.2 57 0.0012 18.1 2.3 35 13-51 11-45 (50)
51 TIGR01738 bioH putative pimelo 30.8 33 0.00072 22.8 1.5 29 36-69 51-79 (245)
52 PF06884 DUF1264: Protein of u 30.7 37 0.00079 24.1 1.7 19 40-58 98-116 (171)
53 cd08350 BLMT_like BLMT, a bleo 30.2 1.3E+02 0.0029 18.3 5.1 18 74-91 34-51 (120)
54 KOG1569 50S ribosomal protein 30.2 48 0.001 25.8 2.4 28 38-65 226-261 (323)
55 PF10045 DUF2280: Uncharacteri 29.6 85 0.0018 20.5 3.2 30 19-50 6-35 (104)
56 PF00249 Myb_DNA-binding: Myb- 29.2 73 0.0016 16.9 2.5 23 23-45 10-32 (48)
57 PF09477 Type_III_YscG: Bacter 29.2 86 0.0019 20.9 3.2 35 13-47 1-35 (116)
58 smart00099 btg1 tob/btg1 famil 29.0 66 0.0014 21.1 2.6 39 19-57 6-47 (108)
59 KOG2130 Phosphatidylserine-spe 28.8 47 0.001 26.2 2.2 18 53-70 277-294 (407)
60 PF06202 GDE_C: Amylo-alpha-1, 28.6 72 0.0016 24.7 3.2 17 36-52 193-209 (370)
61 COG1498 SIK1 Protein implicate 28.5 73 0.0016 25.5 3.2 40 9-50 200-239 (395)
62 cd05392 RasGAP_Neurofibromin_l 28.3 46 0.001 25.2 2.1 35 26-61 140-174 (323)
63 PF06840 DUF1241: Protein of u 28.2 40 0.00086 23.5 1.5 14 37-50 122-135 (154)
64 TIGR02087 LEUD_arch 3-isopropy 28.2 44 0.00094 23.1 1.7 32 38-69 27-62 (154)
65 PF08015 Pheromone: Fungal mat 28.1 33 0.00072 20.2 1.0 13 48-60 55-69 (69)
66 PRK09111 DNA polymerase III su 27.7 61 0.0013 27.1 2.8 29 37-65 504-532 (598)
67 PRK10425 DNase TatD; Provision 27.4 1.8E+02 0.0039 21.4 5.0 49 14-62 102-157 (258)
68 PF01545 Cation_efflux: Cation 26.7 70 0.0015 23.1 2.7 23 38-60 254-276 (284)
69 PRK13601 putative L7Ae-like ri 26.3 1.3E+02 0.0028 18.5 3.5 24 4-27 25-48 (82)
70 PRK10667 Hha toxicity attenuat 26.1 91 0.002 20.9 2.9 32 19-52 49-84 (122)
71 PF13798 PCYCGC: Protein of un 25.9 29 0.00062 24.4 0.5 33 19-54 115-147 (158)
72 cd01578 AcnA_Mitochon_Swivel M 25.5 40 0.00086 23.4 1.2 17 53-69 68-84 (149)
73 PF01743 PolyA_pol: Poly A pol 25.0 2E+02 0.0043 18.6 4.9 37 41-79 28-64 (126)
74 PF14372 DUF4413: Domain of un 25.0 1.2E+02 0.0026 19.0 3.3 29 25-53 19-49 (101)
75 cd05498 Bromo_Brdt_II_like Bro 24.8 1.8E+02 0.0039 18.0 4.8 38 15-52 64-102 (102)
76 TIGR03384 betaine_BetI transcr 24.7 1.5E+02 0.0033 19.5 4.0 31 12-42 4-36 (189)
77 KOG4194 Membrane glycoprotein 24.7 42 0.00091 28.9 1.3 45 52-96 585-642 (873)
78 PF08594 UPF0300: Uncharacteri 24.5 2.4E+02 0.0053 20.7 5.1 19 55-73 95-113 (215)
79 PRK06683 hypothetical protein; 24.5 1.5E+02 0.0032 18.1 3.5 24 4-27 28-51 (82)
80 TIGR03228 anthran_1_2_A anthra 23.9 1.6E+02 0.0035 23.7 4.5 45 44-92 27-71 (438)
81 CHL00168 pbsA heme oxygenase; 23.7 95 0.0021 22.9 2.9 38 11-49 179-216 (238)
82 PF04622 ERG2_Sigma1R: ERG2 an 23.4 1.7E+02 0.0036 21.5 4.1 35 19-54 34-68 (216)
83 PLN00072 3-isopropylmalate iso 23.3 75 0.0016 23.8 2.3 60 4-68 71-143 (246)
84 PF00352 TBP: Transcription fa 23.3 1.3E+02 0.0029 18.1 3.2 25 68-92 31-59 (86)
85 PF09868 DUF2095: Uncharacteri 23.2 1.8E+02 0.0038 19.6 3.8 17 38-54 95-115 (128)
86 PF15586 Imm47: Immunity prote 22.9 2E+02 0.0043 18.8 4.1 33 20-52 80-112 (116)
87 PF10655 DUF2482: Hypothetical 22.6 81 0.0018 20.3 2.1 29 37-65 24-65 (100)
88 PRK13294 F420-0--gamma-glutamy 22.6 99 0.0021 24.9 3.0 33 36-68 124-156 (448)
89 PF02283 CobU: Cobinamide kina 22.4 97 0.0021 21.4 2.7 23 38-61 37-59 (167)
90 PF09792 But2: Ubiquitin 3 bin 22.2 2.6E+02 0.0056 18.9 4.9 43 47-92 14-56 (143)
91 PRK08775 homoserine O-acetyltr 22.1 59 0.0013 24.3 1.6 33 38-70 121-153 (343)
92 PRK05583 ribosomal protein L7A 21.9 1.5E+02 0.0032 18.9 3.3 24 4-27 34-57 (104)
93 PF06793 UPF0262: Uncharacteri 21.8 98 0.0021 21.7 2.5 30 15-51 107-136 (158)
94 cd03548 Rieske_RO_Alpha_OMO_CA 21.7 2.3E+02 0.0049 18.6 4.3 35 51-91 10-45 (136)
95 cd05391 RasGAP_p120GAP p120GAP 21.7 71 0.0015 24.6 2.0 34 23-57 137-170 (315)
96 PF10757 YbaJ: Biofilm formati 21.4 1.1E+02 0.0023 20.6 2.5 32 19-52 49-84 (122)
97 PRK13602 putative ribosomal pr 21.3 1.7E+02 0.0037 17.7 3.4 25 4-28 28-52 (82)
98 PF01726 LexA_DNA_bind: LexA D 21.3 1.8E+02 0.0039 16.9 3.3 29 16-44 6-35 (65)
99 PF10302 DUF2407: DUF2407 ubiq 21.1 47 0.001 21.1 0.8 8 55-62 89-96 (97)
100 PRK13888 conjugal transfer pro 20.9 31 0.00067 25.2 -0.1 19 41-59 91-109 (206)
101 cd01577 IPMI_Swivel Aconatase- 20.8 50 0.0011 20.9 0.8 15 55-69 18-32 (91)
102 KOG2915 tRNA(1-methyladenosine 20.8 97 0.0021 24.0 2.5 33 46-78 37-70 (314)
103 smart00331 PP2C_SIG Sigma fact 20.7 2.2E+02 0.0048 19.0 4.2 13 36-48 179-191 (193)
104 PF12697 Abhydrolase_6: Alpha/ 20.7 61 0.0013 21.0 1.3 32 37-69 49-80 (228)
105 PF11841 DUF3361: Domain of un 20.4 2.4E+02 0.0052 19.7 4.3 34 12-45 113-146 (160)
106 cd05135 RasGAP_RASAL Ras GTPas 20.3 1.8E+02 0.0039 22.5 4.0 32 25-57 162-193 (333)
107 KOG1573 Aldehyde reductase [Ge 20.0 3.4E+02 0.0074 19.5 6.4 50 11-62 91-144 (204)
No 1
>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]
Probab=100.00 E-value=1.5e-42 Score=218.95 Aligned_cols=90 Identities=54% Similarity=0.900 Sum_probs=86.6
Q ss_pred CCCCCceEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEe
Q 034278 1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQL 80 (99)
Q Consensus 1 M~~~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~ 80 (99)
|.+.+++|+.+||+++||++|+++|+.|+++|+. +.++||..||++||++||++||||||++|||+|||++++||||++
T Consensus 1 ~~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~-~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~ 79 (90)
T KOG3430|consen 1 MLERKAVVKATDMPEEMQQEAIELARQALEKFNV-IEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYL 79 (90)
T ss_pred CCCccceEecCCCChHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEe
Confidence 7889999999999999999999999999999995 339999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeecC
Q 034278 81 ETLKFLIFKGS 91 (99)
Q Consensus 81 ~~~~vLifkt~ 91 (99)
|.++|||||+.
T Consensus 80 g~l~illfK~~ 90 (90)
T KOG3430|consen 80 GVLAILLFKCA 90 (90)
T ss_pred ceEEEEEEecC
Confidence 99999999984
No 2
>PTZ00059 dynein light chain; Provisional
Probab=100.00 E-value=1.1e-41 Score=217.60 Aligned_cols=89 Identities=46% Similarity=0.816 Sum_probs=86.8
Q ss_pred CCCCCceEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEe
Q 034278 1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQL 80 (99)
Q Consensus 1 M~~~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~ 80 (99)
|++++++|+.+|||++||++|+++|.+|+++|+.+ +|||++||++||++|||+||||||++|||++||++++||||++
T Consensus 2 m~~~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~--kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~ 79 (90)
T PTZ00059 2 MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYL 79 (90)
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHcCch--HHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEE
Confidence 78889999999999999999999999999999987 9999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeecC
Q 034278 81 ETLKFLIFKGS 91 (99)
Q Consensus 81 ~~~~vLifkt~ 91 (99)
|+++|||||++
T Consensus 80 ~~~~vLlfK~~ 90 (90)
T PTZ00059 80 GQVAILLFKSG 90 (90)
T ss_pred CCEEEEEEecC
Confidence 99999999985
No 3
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=100.00 E-value=1e-40 Score=212.08 Aligned_cols=89 Identities=47% Similarity=0.823 Sum_probs=84.6
Q ss_pred CCCCCceEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEe
Q 034278 1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQL 80 (99)
Q Consensus 1 M~~~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~ 80 (99)
|++.+++|+.+||+++||++|+++|.+|+++++++ +++|++||++||++|||+||||||++|||++||++++++||++
T Consensus 1 m~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~--~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~ 78 (89)
T PF01221_consen 1 MSENKIVIKSSDMPEEMQEEAIELAKEALKKYQDE--KEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKI 78 (89)
T ss_dssp SGSCSEEEEEEES-HHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEE
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcH--HHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEE
Confidence 89999999999999999999999999999999977 9999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeecC
Q 034278 81 ETLKFLIFKGS 91 (99)
Q Consensus 81 ~~~~vLifkt~ 91 (99)
++++||||||+
T Consensus 79 ~~~~~li~kt~ 89 (89)
T PF01221_consen 79 GNIAFLIFKTQ 89 (89)
T ss_dssp TTEEEEEEEE-
T ss_pred CCEEEEEEecC
Confidence 99999999985
No 4
>PLN03058 dynein light chain type 1 family protein; Provisional
Probab=100.00 E-value=3.5e-40 Score=221.90 Aligned_cols=93 Identities=38% Similarity=0.759 Sum_probs=87.6
Q ss_pred CCCceEEeCCCCHHHHHHHHHHHHHHHhhcCc-cCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEeC
Q 034278 3 EGKALIEDTDMPVKMQLYAMASASQALDVYDV-FDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLE 81 (99)
Q Consensus 3 ~~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~-~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~ 81 (99)
+.+++|+.+|||++||++|+++|.+|+++++. .+.++||.+||++||++|||+||||||++|||+|||++++||||++|
T Consensus 33 ~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIyF~ig 112 (128)
T PLN03058 33 ELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFSID 112 (128)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEEEEEC
Confidence 46899999999999999999999999999863 23489999999999999999999999999999999999999999999
Q ss_pred CEEEEEeecCCCCC
Q 034278 82 TLKFLIFKGSSSPP 95 (99)
Q Consensus 82 ~~~vLifkt~~~~~ 95 (99)
+++||||||+..|.
T Consensus 113 ~~aiLLfKt~~~~~ 126 (128)
T PLN03058 113 KVYILLFKTAVEPL 126 (128)
T ss_pred CEEEEEEeccCccC
Confidence 99999999999985
No 5
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=97.66 E-value=0.00075 Score=41.32 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEeC-CcceeEEEcCCcEEEEEeCCEEEEEee
Q 034278 36 DCKSIAAHIKKEFDKRYGGGWQCVVGS-NFGCFFTHTEGTFIYFQLETLKFLIFK 89 (99)
Q Consensus 36 ~~~~iA~~iK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~vLifk 89 (99)
++.++++.|.+.++++||+.+-||+++ +|.....+. ..|--...++...++|+
T Consensus 23 ~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~ 76 (76)
T PF04155_consen 23 NLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA 76 (76)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence 458999999999999999999999999 776666655 77888899999999985
No 6
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=92.40 E-value=1.4 Score=34.05 Aligned_cols=54 Identities=19% Similarity=0.367 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhcccCCC-ceEEEEeC--------CcceeEEEcCCcEEE-EEeCCEEEEEeecC
Q 034278 38 KSIAAHIKKEFDKRYGG-GWQCVVGS--------NFGCFFTHTEGTFIY-FQLETLKFLIFKGS 91 (99)
Q Consensus 38 ~~iA~~iK~~lD~~yg~-~WhcIVG~--------~Fgs~vth~~~~~i~-F~~~~~~vLifkt~ 91 (99)
.+.|..||+.||+-... .+-+||-. .|.....+..+.+|. |.-|+..++||||.
T Consensus 189 ~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS~ 252 (345)
T PF05075_consen 189 EEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRSK 252 (345)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEeeC
Confidence 78999999999997643 68888822 112222345666666 67899999999993
No 7
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=81.74 E-value=1.3 Score=28.23 Aligned_cols=18 Identities=44% Similarity=1.016 Sum_probs=15.4
Q ss_pred HHHhhcccCCCceEEEEe
Q 034278 44 IKKEFDKRYGGGWQCVVG 61 (99)
Q Consensus 44 iK~~lD~~yg~~WhcIVG 61 (99)
-|++|...||.+|.|||-
T Consensus 70 Y~~el~~~~G~~W~~~l~ 87 (89)
T PF15650_consen 70 YKQELEKIYGGGWKTRLE 87 (89)
T ss_pred HHHHhcCccCCCeeEEee
Confidence 457899999999999973
No 8
>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.
Probab=81.48 E-value=11 Score=28.85 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=33.3
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhh-cccCCCceEEEEeC
Q 034278 8 IEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEF-DKRYGGGWQCVVGS 62 (99)
Q Consensus 8 V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~l-D~~yg~~WhcIVG~ 62 (99)
|..++|+.+.|+.+..++..-+..++.+ .|+..-+.+ ...++.+|-+-+|.
T Consensus 216 l~~s~Lt~~Qq~ll~~li~~y~~~~~~~----~a~~~~~~i~~~~ld~t~faW~G~ 267 (313)
T PF12006_consen 216 LAVSELTADQQELLLALIKEYLGRLPEE----DAAERMAEIEEAGLDETYFAWAGG 267 (313)
T ss_pred cChhhCCHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHhccccceEEEEecC
Confidence 5678999999999999999988888743 333322223 33344445554544
No 9
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=74.71 E-value=7.9 Score=21.09 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcc
Q 034278 15 VKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDK 50 (99)
Q Consensus 15 ~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~ 50 (99)
+.++++|++.++.-+++.+ .+|-..|+++|.+
T Consensus 6 e~~KqEIL~EvrkEl~K~K----~EIIeA~~~eL~r 37 (40)
T PF08776_consen 6 ERLKQEILEEVRKELQKVK----EEIIEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhc
Confidence 4588999999999999887 5688888888765
No 10
>KOG2451 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=67.57 E-value=13 Score=30.04 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=35.4
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhc
Q 034278 4 GKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFD 49 (99)
Q Consensus 4 ~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD 49 (99)
+.++=...||+-+.-+++++.|.+|++.|.+...++-++-|+++.|
T Consensus 49 geii~~V~~~~V~e~~kAI~aA~EaF~s~~~~takeRs~lLrkwy~ 94 (503)
T KOG2451|consen 49 GEIIGKVADMTVEEAEKAIDAAYEAFKSYRNLTAKERSALLRKWYE 94 (503)
T ss_pred cchhhcccCCcHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 4455578999999999999999999999975444565666665554
No 11
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=66.07 E-value=3.5 Score=25.51 Aligned_cols=15 Identities=47% Similarity=0.824 Sum_probs=12.3
Q ss_pred HHHHHHhhcccCCCc
Q 034278 41 AAHIKKEFDKRYGGG 55 (99)
Q Consensus 41 A~~iK~~lD~~yg~~ 55 (99)
-+.+++.+.++|||-
T Consensus 42 ~~~l~~~Ye~~yGPL 56 (78)
T PF12652_consen 42 RKQLKKEYEKRYGPL 56 (78)
T ss_pred HHHHHHHHHHHhCCC
Confidence 356889999999994
No 12
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=63.10 E-value=18 Score=23.90 Aligned_cols=39 Identities=5% Similarity=0.287 Sum_probs=27.9
Q ss_pred hcccCCCceEEEEeC-CcceeEEEcCCcEEEEEeCCEEEEEeecC
Q 034278 48 FDKRYGGGWQCVVGS-NFGCFFTHTEGTFIYFQLETLKFLIFKGS 91 (99)
Q Consensus 48 lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~vLifkt~ 91 (99)
|++-|...|+.|.=. .+. +.+.+..+.+++..++|+|..
T Consensus 1 ~~~i~~~~W~~v~~~~el~-----~~g~~~~~~~~~~~i~l~r~~ 40 (128)
T cd03472 1 LERVFARSWLLLGHETHIP-----KAGDYLTTYMGEDPVIVVRQK 40 (128)
T ss_pred CcchhhCCCeEeEEHHHCC-----CCCCEEEEEECCceEEEEECC
Confidence 566688899986544 332 346667788899899999863
No 13
>PF10703 MoaF: Molybdenum cofactor biosynthesis protein F; InterPro: IPR024724 Molybdenum cofactor biosynthesis protein F (MoaF) is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella []. It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha []. MoaF is conserved in proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis.
Probab=61.43 E-value=17 Score=27.45 Aligned_cols=38 Identities=21% Similarity=0.556 Sum_probs=29.3
Q ss_pred ceEEEEeCCcceeEEEcCCcEEEEEeC-CEEEEEeecCCCCC
Q 034278 55 GWQCVVGSNFGCFFTHTEGTFIYFQLE-TLKFLIFKGSSSPP 95 (99)
Q Consensus 55 ~WhcIVG~~Fgs~vth~~~~~i~F~~~-~~~vLifkt~~~~~ 95 (99)
+|||+.|-.=|-. ++..+-+++++ ++.++.|+=...|.
T Consensus 182 ~W~CL~G~e~Gla---D~D~c~~~Ki~d~lYlf~WrEkiiPv 220 (265)
T PF10703_consen 182 AWQCLSGVEKGLA---DTDRCHYYKIADNLYLFTWREKIIPV 220 (265)
T ss_pred EEEEeeccccCCC---CccceEEEEecCCEEEEEEEecccce
Confidence 8999999866643 46888889985 78888898776653
No 14
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=61.34 E-value=32 Score=21.65 Aligned_cols=51 Identities=20% Similarity=0.457 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhccc--CCCceEEEEeCCcceeEEEcCCcEEEEEeC----CEEEEEeecCC
Q 034278 38 KSIAAHIKKEFDKR--YGGGWQCVVGSNFGCFFTHTEGTFIYFQLE----TLKFLIFKGSS 92 (99)
Q Consensus 38 ~~iA~~iK~~lD~~--yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~----~~~vLifkt~~ 92 (99)
.++.++||+.++.. ++..| |.|.= +.++.-.+..+||.+. .+...+|++..
T Consensus 5 s~l~~~ik~~le~~~~~~~vw--V~GEI--s~~~~~~~gh~YftLkD~~a~i~~~~~~~~~ 61 (99)
T PF13742_consen 5 SELNNYIKDLLERDPPLPNVW--VEGEI--SNLKRHSSGHVYFTLKDEEASISCVIFRSRA 61 (99)
T ss_pred HHHHHHHHHHHhcCCCcCCEE--EEEEE--eecEECCCceEEEEEEcCCcEEEEEEEHHHH
Confidence 68999999999998 57888 55651 1222226777899873 56788888753
No 15
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=61.14 E-value=11 Score=24.99 Aligned_cols=29 Identities=17% Similarity=0.418 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhcccCCCceEEEEeCCcc
Q 034278 37 CKSIAAHIKKEFDKRYGGGWQCVVGSNFG 65 (99)
Q Consensus 37 ~~~iA~~iK~~lD~~yg~~WhcIVG~~Fg 65 (99)
..++|..|++.|..--|..|.|.+++.=|
T Consensus 48 p~dl~~~L~~~L~~wTG~rW~V~~s~~~g 76 (117)
T PF12362_consen 48 PKDLAQRLSRKLQEWTGQRWIVSLSNEPG 76 (117)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 48999999999999999999999998654
No 16
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=60.74 E-value=27 Score=27.55 Aligned_cols=49 Identities=29% Similarity=0.627 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcccCCCceEEEEeC--CcceeEEEcCCcEEEEEeC----CEEEEEeecCC
Q 034278 38 KSIAAHIKKEFDKRYGGGWQCVVGS--NFGCFFTHTEGTFIYFQLE----TLKFLIFKGSS 92 (99)
Q Consensus 38 ~~iA~~iK~~lD~~yg~~WhcIVG~--~Fgs~vth~~~~~i~F~~~----~~~vLifkt~~ 92 (99)
.++..+||..||..++..| |.|. +|- .-....+||.+. .+...+|++..
T Consensus 9 sel~~~ik~~le~~~~~v~--v~gEis~~~----~~~sGH~Yf~Lkd~~a~i~~~~~~~~~ 63 (438)
T PRK00286 9 SELNRYVKSLLERDLGQVW--VRGEISNFT----RHSSGHWYFTLKDEIAQIRCVMFKGSA 63 (438)
T ss_pred HHHHHHHHHHHHhhCCcEE--EEEEeCCCe----eCCCCeEEEEEEcCCcEEEEEEEcChh
Confidence 6899999999999988888 5665 443 224557899874 57899999753
No 17
>PF06150 ChaB: ChaB; InterPro: IPR009317 This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in Escherichia coli and is found next to ChaA, which is a cation transporter protein. ChaB may be regulate ChaA function in some way.; PDB: 1SG7_A.
Probab=57.70 E-value=31 Score=19.94 Aligned_cols=46 Identities=22% Similarity=0.415 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCccC-HHHHH-HHHHHhhcccCCCceE
Q 034278 11 TDMPVKMQLYAMASASQALDVYDVFD-CKSIA-AHIKKEFDKRYGGGWQ 57 (99)
Q Consensus 11 ~dM~~~~q~~~~~~a~~a~~~~~~~~-~~~iA-~~iK~~lD~~yg~~Wh 57 (99)
..||..-|+--++.-..|++.|.++. -..+| ..+|+...+ -|+.|.
T Consensus 7 ~~LP~~Aq~if~~afn~a~~~~~de~~A~~vAw~AVk~~Y~k-~~g~W~ 54 (57)
T PF06150_consen 7 EHLPEHAQRIFRKAFNSAWEEYGDEERAHRVAWAAVKRKYEK-VNGRWV 54 (57)
T ss_dssp TT--SHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHEEE-SSS-EE
T ss_pred hHCCHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHhee-cCCEee
Confidence 45777777777777788888886431 11234 679999999 788895
No 18
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=55.35 E-value=12 Score=24.73 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhcccCCCceE
Q 034278 38 KSIAAHIKKEFDKRYGGGWQ 57 (99)
Q Consensus 38 ~~iA~~iK~~lD~~yg~~Wh 57 (99)
...|+.|.+.|-.+|.+.|+
T Consensus 28 ~~F~~~L~~~L~~ry~~HW~ 47 (118)
T PF07742_consen 28 DRFAEELENLLCERYKGHWY 47 (118)
T ss_dssp HHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 45788999999999999997
No 19
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=54.77 E-value=12 Score=25.93 Aligned_cols=33 Identities=36% Similarity=0.538 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhcc----cCCCceEEEEeCCcceeEE
Q 034278 37 CKSIAAHIKKEFDK----RYGGGWQCVVGSNFGCFFT 69 (99)
Q Consensus 37 ~~~iA~~iK~~lD~----~yg~~WhcIVG~~Fgs~vt 69 (99)
.+++|+++-+.+|. ++.+..-+|.|++|||==|
T Consensus 26 ~~~l~~~~f~~~~p~f~~~~~~g~iiVaG~NFG~GSS 62 (156)
T TIGR02084 26 PKELAKHCMEDLDKDFVKKVKEGDIIVAGENFGCGSS 62 (156)
T ss_pred HHHHHhhhhccCChhHHhhcCCCCEEEccCcccCCCc
Confidence 36778777777664 4456667777889997433
No 20
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=54.40 E-value=11 Score=25.08 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhcc------cCCCceEEEEeCCcceeEE
Q 034278 38 KSIAAHIKKEFDK------RYGGGWQCVVGSNFGCFFT 69 (99)
Q Consensus 38 ~~iA~~iK~~lD~------~yg~~WhcIVG~~Fgs~vt 69 (99)
.++++++-..+|. +.|..+=+|.|++||+==|
T Consensus 26 ~~l~~~~f~~~~p~f~~~~~~~~~~iiVaG~nFG~GSS 63 (121)
T cd01579 26 PAISEFVFHRVDPTFAERAKAAGPGFIVGGENYGQGSS 63 (121)
T ss_pred HHHHHhhccCCCchHHhhcccCCCeEEEcCCcCCCCcc
Confidence 3455544444443 3355566777889997433
No 21
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=52.39 E-value=46 Score=22.40 Aligned_cols=44 Identities=14% Similarity=0.364 Sum_probs=32.1
Q ss_pred HHHHhhcccCCCceEEEEeC-CcceeEEEcCCcEEEEEeCCEEEEEeecC
Q 034278 43 HIKKEFDKRYGGGWQCVVGS-NFGCFFTHTEGTFIYFQLETLKFLIFKGS 91 (99)
Q Consensus 43 ~iK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~vLifkt~ 91 (99)
....+++.-|...|+.|.-. .. -+++.++-+.+++..++|+|..
T Consensus 10 ~~~~e~~~i~~~~W~~v~~~~el-----p~~G~~~~~~i~g~~i~v~r~~ 54 (146)
T cd03538 10 IFALEMERLFGNAWIYVGHESQV-----PNPGDYITTRIGDQPVVMVRHT 54 (146)
T ss_pred HHHHHHHHHhhcCCEEEEEHHHC-----CCCCCEEEEEECCeeEEEEECC
Confidence 44566777788899986543 33 1357788889999999999864
No 22
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=50.17 E-value=27 Score=20.88 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeCCc
Q 034278 21 AMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNF 64 (99)
Q Consensus 21 ~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~~F 64 (99)
=++.|.+|++.++-. ++.+...=+.|=+-||+.|--|=-.+|
T Consensus 10 R~daA~dam~~lG~~--~~~v~~vl~~LL~lY~~nW~lIEed~Y 51 (65)
T PF10440_consen 10 RIDAALDAMRQLGFS--KKQVRPVLKNLLKLYDGNWELIEEDNY 51 (65)
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHcCCchhhhcccH
Confidence 356788888888865 444444334444578888977654444
No 23
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=49.07 E-value=47 Score=22.85 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcC----cc--------CHHHHHHHHHHhhc
Q 034278 11 TDMPVKMQLYAMASASQALDVYD----VF--------DCKSIAAHIKKEFD 49 (99)
Q Consensus 11 ~dM~~~~q~~~~~~a~~a~~~~~----~~--------~~~~iA~~iK~~lD 49 (99)
.+||++.++++++...+-++.-. +| +++++|+.|+....
T Consensus 15 ~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 15 KKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 46999999999998888877542 11 36788888886543
No 24
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=46.19 E-value=55 Score=23.49 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=29.4
Q ss_pred HhhcccCCCceEEEEeCCcceeEEE--cCC---cEEEEEeCC
Q 034278 46 KEFDKRYGGGWQCVVGSNFGCFFTH--TEG---TFIYFQLET 82 (99)
Q Consensus 46 ~~lD~~yg~~WhcIVG~~Fgs~vth--~~~---~~i~F~~~~ 82 (99)
..|.+.|+..|.+-|...-+..+++ ... .-.||..+.
T Consensus 119 ~~f~~~f~~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~~~ 160 (235)
T PF14900_consen 119 DEFKKYFGSDYSVTVSTGAGGSVTFNKDETTSDRSAYFKAGE 160 (235)
T ss_pred HHHHhhhccceEEEEEccCCccEEEeeccCCCCcceEEECCC
Confidence 4566777788999999865888877 555 889999988
No 25
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=43.42 E-value=31 Score=24.14 Aligned_cols=32 Identities=19% Similarity=0.090 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhcc----cCCCceEEEEeCCcceeEE
Q 034278 38 KSIAAHIKKEFDK----RYGGGWQCVVGSNFGCFFT 69 (99)
Q Consensus 38 ~~iA~~iK~~lD~----~yg~~WhcIVG~~Fgs~vt 69 (99)
.++++++-+.+|. ++.+..=+|.|++|||==|
T Consensus 29 ~~l~~~~f~~~~p~f~~~~~~g~IIVaG~NFG~GSS 64 (166)
T PRK14023 29 DRFHNYAFAHLRPEFASTVRPGDILVAGRNFGLGSS 64 (166)
T ss_pred HHHHhhhccCCChhhHhhcCCCCEEEccCcccCCcc
Confidence 5666666655553 4455666777789997433
No 26
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=43.27 E-value=96 Score=24.70 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcccCCCceEEEEeC--CcceeEEEcCCcEEEEEeC----CEEEEEeecCC
Q 034278 38 KSIAAHIKKEFDKRYGGGWQCVVGS--NFGCFFTHTEGTFIYFQLE----TLKFLIFKGSS 92 (99)
Q Consensus 38 ~~iA~~iK~~lD~~yg~~WhcIVG~--~Fgs~vth~~~~~i~F~~~----~~~vLifkt~~ 92 (99)
.++..+||+.||..|+..| |.|. +|-. | ....+||.+. .+...+|++..
T Consensus 3 sel~~~ik~~le~~~~~v~--V~GEisn~~~---~-~sGH~YFtLkD~~a~i~~vmf~~~~ 57 (432)
T TIGR00237 3 SELNAQIKALLEATFLQVW--IQGEISNFTQ---P-VSGHWYFTLKDENAQVRCVMFRGNN 57 (432)
T ss_pred HHHHHHHHHHHHhhCCcEE--EEEEecCCee---C-CCceEEEEEEcCCcEEEEEEEcChh
Confidence 5789999999999999888 5665 6542 3 4446899873 57889999864
No 27
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=42.16 E-value=8.1 Score=23.58 Aligned_cols=12 Identities=33% Similarity=1.190 Sum_probs=10.0
Q ss_pred HhhcccCCCceE
Q 034278 46 KEFDKRYGGGWQ 57 (99)
Q Consensus 46 ~~lD~~yg~~Wh 57 (99)
+.|+++||..|-
T Consensus 29 ~~le~~yG~~WR 40 (81)
T PF12550_consen 29 RSLEKKYGSKWR 40 (81)
T ss_pred HHHHHHhChhhc
Confidence 467899999996
No 28
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=41.10 E-value=43 Score=20.62 Aligned_cols=21 Identities=5% Similarity=0.074 Sum_probs=16.6
Q ss_pred CCcEEEEEeCCEEEEEeecCC
Q 034278 72 EGTFIYFQLETLKFLIFKGSS 92 (99)
Q Consensus 72 ~~~~i~F~~~~~~vLifkt~~ 92 (99)
++..+.++.++..|.+|+|+.
T Consensus 29 p~~~f~aK~~~~tIt~Y~SGK 49 (81)
T PF11858_consen 29 PYAVFQAKYNGVTITAYKSGK 49 (81)
T ss_dssp TTEEEEEEETTEEEEEETTSE
T ss_pred CCEEEEEeCCCeEEEEEeCCe
Confidence 455556789999999999874
No 29
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=39.51 E-value=1.1e+02 Score=20.55 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHHHHhhcccCC-CceEEEEeC-CcceeEEEcCCcEEEEEeCCEEEEEeec
Q 034278 42 AHIKKEFDKRYG-GGWQCVVGS-NFGCFFTHTEGTFIYFQLETLKFLIFKG 90 (99)
Q Consensus 42 ~~iK~~lD~~yg-~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~vLifkt 90 (99)
+....++++-|. ..|+.+.-. .. -+++.++-+.+++..++|+|.
T Consensus 11 ~~~~~E~~~if~~~~W~~v~~~~el-----~~~g~~~~~~i~g~~iiv~r~ 56 (150)
T cd03545 11 AYFDREQERIFRGKTWSYVGLEAEI-----PNAGDFKSTFVGDTPVVVTRA 56 (150)
T ss_pred HHHHHHHHhhhCCCceEEEEEHHHC-----CCCCCEEEEEECCceEEEEEC
Confidence 456678888895 899998765 33 135677778898888888885
No 30
>PF08958 DUF1871: Domain of unknown function (DUF1871); InterPro: IPR015053 This set of hypothetical proteins is produced by prokaryotes pertaining to the Bacillus genus. ; PDB: 1U84_A.
Probab=39.31 E-value=27 Score=21.56 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=19.7
Q ss_pred HHHHHHhhcCccCHHHHHHHHHHhhcccCCC
Q 034278 24 SASQALDVYDVFDCKSIAAHIKKEFDKRYGG 54 (99)
Q Consensus 24 ~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~ 54 (99)
.+..++...+ +.+++|+.|++-|...||.
T Consensus 26 ~Iv~~v~~~~--~~~~LA~~Iq~If~~SF~e 54 (79)
T PF08958_consen 26 DIVQAVHEND--DPEELAKKIQSIFEFSFGE 54 (79)
T ss_dssp HHHHHHTT-S---HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHHcc
Confidence 3344555444 4489999999999888875
No 31
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=38.53 E-value=40 Score=25.16 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEeCCcceeE
Q 034278 36 DCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFF 68 (99)
Q Consensus 36 ~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~v 68 (99)
|+..-|+.|++.|.+++|..=-|||..+||--.
T Consensus 123 DPd~sA~~ir~~l~~~~g~~v~VIItDt~gr~~ 155 (243)
T TIGR01916 123 DPDASAEKIRRGLRELTGVDVGVIITDTNGRPF 155 (243)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEEEECCCCCcc
Confidence 567899999999999999999999999988543
No 32
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=38.11 E-value=33 Score=24.69 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhc---ccCCCceEEEEeCCcceeE
Q 034278 38 KSIAAHIKKEFD---KRYGGGWQCVVGSNFGCFF 68 (99)
Q Consensus 38 ~~iA~~iK~~lD---~~yg~~WhcIVG~~Fgs~v 68 (99)
+++|..|-+.++ +++|..=-+.||.|||+-+
T Consensus 48 ~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADv 81 (192)
T PF06057_consen 48 EQTAADLARIIRHYRARWGRKRVVLIGYSFGADV 81 (192)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEEeecCCchh
Confidence 445544433333 3445555589999999854
No 33
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=38.00 E-value=1.7e+02 Score=21.73 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHHhhcCc-cCHHHHHHHHHHhhccc
Q 034278 13 MPVKMQLYAMASASQALDVYDV-FDCKSIAAHIKKEFDKR 51 (99)
Q Consensus 13 M~~~~q~~~~~~a~~a~~~~~~-~~~~~iA~~iK~~lD~~ 51 (99)
|..++..++++...+.++.-.. .+..++|++|++.|++.
T Consensus 1 ~~~~~~~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~ 40 (352)
T PRK13007 1 MTLDLAADLAELTAALVDIPSVSGDEKALADAVEAALRAL 40 (352)
T ss_pred CccchHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhC
Confidence 4555778888888888875542 12378999999999986
No 34
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=37.52 E-value=55 Score=26.57 Aligned_cols=51 Identities=27% Similarity=0.599 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEeC----CEEEEEeecCC
Q 034278 38 KSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLE----TLKFLIFKGSS 92 (99)
Q Consensus 38 ~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~----~~~vLifkt~~ 92 (99)
.++..+||..||..||..| |-|. =|.++.-.....||.+. .+...+|+...
T Consensus 9 Seln~~ik~llE~~~~~V~--v~GE--ISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~ 63 (440)
T COG1570 9 SELNDYIKRLLERDLGQVW--VRGE--ISNFTRPASGHLYFTLKDERAQIRCVMFKGNN 63 (440)
T ss_pred HHHHHHHHHHHHhcCCeEE--EEEE--ecCCccCCCccEEEEEccCCceEEEEEEcCcc
Confidence 6899999999999999998 5565 13455444448999984 56777887654
No 35
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=36.13 E-value=1.3e+02 Score=22.43 Aligned_cols=49 Identities=8% Similarity=0.130 Sum_probs=33.7
Q ss_pred eCCCCHHHHHHHHHHHHHH------------HhhcCccCHHHHHHHHHHhhcccCCCceEEEEe
Q 034278 10 DTDMPVKMQLYAMASASQA------------LDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVG 61 (99)
Q Consensus 10 ~~dM~~~~q~~~~~~a~~a------------~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG 61 (99)
..+||++.+..+++.+.+. -.........+..+.+++.||. +.|.|||=
T Consensus 94 ~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeA---GA~~ViiE 154 (237)
T TIGR03849 94 SMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEA---GADYVIIE 154 (237)
T ss_pred ccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHC---CCcEEEEe
Confidence 3589999999999999854 1111112346778888888874 67777774
No 36
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=35.19 E-value=76 Score=18.37 Aligned_cols=21 Identities=10% Similarity=0.234 Sum_probs=12.6
Q ss_pred eCCCCHHHHHHHHHHHHH-HHh
Q 034278 10 DTDMPVKMQLYAMASASQ-ALD 30 (99)
Q Consensus 10 ~~dM~~~~q~~~~~~a~~-a~~ 30 (99)
.+|+..+.-+++++..++ .+.
T Consensus 36 ~aDVg~~~a~~i~~~ik~~~~~ 57 (75)
T PF02881_consen 36 EADVGVEVAEKIIENIKKKLIK 57 (75)
T ss_dssp HTTTSHHHHHHHHHHHHHHHHC
T ss_pred HcCcCHHHHHHHHHHHHHHHhc
Confidence 456666666666666666 444
No 37
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=34.86 E-value=49 Score=24.72 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEeCCcce
Q 034278 36 DCKSIAAHIKKEFDKRYGGGWQCVVGSNFGC 66 (99)
Q Consensus 36 ~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs 66 (99)
|+..-|+.|++.|.+++|..=-|||..+||-
T Consensus 124 DPd~SA~~ir~~l~~~~g~~v~VIItDt~gr 154 (245)
T PRK13293 124 NPDESAERIREGLEELTGKKVGVIITDTNGR 154 (245)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 5678999999999999999999999999984
No 38
>PF06457 Ectatomin: Ectatomin; InterPro: IPR009458 Ectatomin is a toxin from the venom of the ant Ectatomma tuberculatum. Ectatomin can efficiently insert into the plasma membrane, where it can form channels. Ectatomin was shown to inhibit L-type calcium currents in isolated rat cardiac myocytes []. In these cells, ectatomin induces a gradual, irreversible increase in ion leakage across the membrane, which can lead to cell death. Ectatomin is comprised of two subunits, A and B, which are homologous. The structure of ectatomin reveals that each subunit consists of two alpha helices with a connecting hinge region, which form a hairpin structure that is stabilised by disulphide bridges. A disulphide bridge between the hinge regions of the two subunits links the heterodimer together, forming a closed bundle of four helices with a left-handed twist [].; GO: 0005216 ion channel activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1ECI_A.
Probab=34.47 E-value=72 Score=16.47 Aligned_cols=13 Identities=54% Similarity=0.641 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhcc
Q 034278 38 KSIAAHIKKEFDK 50 (99)
Q Consensus 38 ~~iA~~iK~~lD~ 50 (99)
.+||.+||+.-|+
T Consensus 22 g~iat~ik~~c~k 34 (34)
T PF06457_consen 22 GSIATMIKRKCDK 34 (34)
T ss_dssp CCHHHHHHHHCH-
T ss_pred ccHHHHHHHHhCC
Confidence 4699999998764
No 39
>PRK06489 hypothetical protein; Provisional
Probab=33.96 E-value=26 Score=26.39 Aligned_cols=33 Identities=9% Similarity=0.242 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhcccCC-CceEEEEeCCcceeEEE
Q 034278 38 KSIAAHIKKEFDKRYG-GGWQCVVGSNFGCFFTH 70 (99)
Q Consensus 38 ~~iA~~iK~~lD~~yg-~~WhcIVG~~Fgs~vth 70 (99)
.++|+.+...+....| ...++|||.|+|+.+.-
T Consensus 136 ~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vAl 169 (360)
T PRK06489 136 DDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHAW 169 (360)
T ss_pred HHHHHHHHHHHHHhcCCCceeEEEEECHHHHHHH
Confidence 5677766665533344 46778999999977653
No 40
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=33.91 E-value=68 Score=16.08 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhcCccCHHHHHHHHHHh
Q 034278 17 MQLYAMASASQALDVYDVFDCKSIAAHIKKE 47 (99)
Q Consensus 17 ~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~ 47 (99)
.-+.++..+...++.-.++ ++|.+.|++.
T Consensus 6 ~C~~~v~~i~~~l~~~~t~--~~I~~~l~~~ 34 (39)
T PF05184_consen 6 ICKFVVKEIEKLLKNNKTE--EEIKKALEKA 34 (39)
T ss_dssp HHHHHHHHHHHHHHSTCHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccH--HHHHHHHHHH
Confidence 4567888888888866666 7787777764
No 41
>PF15571 Imm25: Immunity protein 25
Probab=33.78 E-value=28 Score=23.43 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhcccCCCceEEEEe
Q 034278 37 CKSIAAHIKKEFDKRYGGGWQCVVG 61 (99)
Q Consensus 37 ~~~iA~~iK~~lD~~yg~~WhcIVG 61 (99)
..++...||+.+|..||..|+-|--
T Consensus 17 fr~~r~~Ik~~~~~~~g~~~~~I~~ 41 (124)
T PF15571_consen 17 FREIRNEIKELNDNLYGIEIESIAE 41 (124)
T ss_pred HHHHHHHHHHHHccccccchhhhce
Confidence 4678888999999999999976533
No 42
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=33.32 E-value=42 Score=22.75 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhcccC----CCceEEEEeCCcceeEEE
Q 034278 37 CKSIAAHIKKEFDKRY----GGGWQCVVGSNFGCFFTH 70 (99)
Q Consensus 37 ~~~iA~~iK~~lD~~y----g~~WhcIVG~~Fgs~vth 70 (99)
.+++|+++-+.+|..| .+.=-+|.|++||+==|.
T Consensus 24 ~e~la~~~~e~~dp~f~~~v~~gdilVaG~nFG~GSSR 61 (129)
T cd01674 24 PEKMAEVCMENYDSEFSTKTKQGDILVSGFNFGTGSSR 61 (129)
T ss_pred HHHHHHhhcccCCchhhhcCCCCCEEEeCCccCCCCcH
Confidence 3677777777777555 223234445599975443
No 43
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=33.14 E-value=38 Score=21.40 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=17.2
Q ss_pred cCHHHHHHHHHHhhcccCCCceEEE
Q 034278 35 FDCKSIAAHIKKEFDKRYGGGWQCV 59 (99)
Q Consensus 35 ~~~~~iA~~iK~~lD~~yg~~WhcI 59 (99)
+..+++++.|++.|+.+ .|+++
T Consensus 33 ~~~~~~~~~l~kRl~~~---~~~~~ 54 (115)
T cd00197 33 VGPKEAVDAIKKRINNK---NPHVV 54 (115)
T ss_pred ccHHHHHHHHHHHhcCC---cHHHH
Confidence 34589999999999875 67764
No 44
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=33.03 E-value=94 Score=18.01 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhcccC
Q 034278 38 KSIAAHIKKEFDKRY 52 (99)
Q Consensus 38 ~~iA~~iK~~lD~~y 52 (99)
++-|+.||+.+|+++
T Consensus 35 qeqAd~ik~~id~~~ 49 (59)
T PF10925_consen 35 QEQADAIKKHIDQRQ 49 (59)
T ss_pred HHHHHHHHHHHHHHH
Confidence 688999999999865
No 45
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=32.57 E-value=48 Score=24.89 Aligned_cols=49 Identities=16% Similarity=0.292 Sum_probs=32.4
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHHHHhhcCccC-HHHH-HHHHHHhhcccCCCceEE
Q 034278 4 GKALIEDTDMPVKMQLYAMASASQALDVYDVFD-CKSI-AAHIKKEFDKRYGGGWQC 58 (99)
Q Consensus 4 ~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~-~~~i-A~~iK~~lD~~yg~~Whc 58 (99)
..+.|..+|.+....++|.. -.|+... ++.+ .+.++++|++.-|+.|++
T Consensus 128 ~~~~I~AtDId~~~L~~A~~------G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v 178 (268)
T COG1352 128 FRVKILATDIDLSVLEKARA------GIYPSRELLRGLPPELLRRYFERGGDGSYRV 178 (268)
T ss_pred CceEEEEEECCHHHHHHHhc------CCCChhHhhccCCHHHHhhhEeecCCCcEEE
Confidence 47899999999986665533 2344211 1233 467789999988887765
No 46
>PF01996 F420_ligase: F420-0:Gamma-glutamyl ligase; InterPro: IPR002847 This entry contains F420-0:gamma-glutamyl ligase and related proteins. F420-0:gamma-glutamyl ligase catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives [, , , ].; PDB: 2G9I_A 2PHN_A.
Probab=32.33 E-value=28 Score=25.41 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=24.4
Q ss_pred cCHHHHHHHHHHhhcccCCCceEEEEeCCcc
Q 034278 35 FDCKSIAAHIKKEFDKRYGGGWQCVVGSNFG 65 (99)
Q Consensus 35 ~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fg 65 (99)
+|....|+.|++.|.+++|..=.|||..++|
T Consensus 130 ~dPd~sA~~i~~~l~~~~g~~v~ViI~Dt~g 160 (228)
T PF01996_consen 130 EDPDASARRIREELKERTGKDVGVIITDTNG 160 (228)
T ss_dssp S-HHHHHHHHHHHHHHHHS---EEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCceEEEEECCCC
Confidence 3578899999999999999999999988777
No 47
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=32.06 E-value=97 Score=22.09 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhcccCCCceEEEEe---------CCcceeE---------EEcCCcEEEEEe-C--CEEEEEeecCCC
Q 034278 38 KSIAAHIKKEFDKRYGGGWQCVVG---------SNFGCFF---------THTEGTFIYFQL-E--TLKFLIFKGSSS 93 (99)
Q Consensus 38 ~~iA~~iK~~lD~~yg~~WhcIVG---------~~Fgs~v---------th~~~~~i~F~~-~--~~~vLifkt~~~ 93 (99)
+|-++.+|+++...+.+.|+=+-| +.|+.+. .+...|...|++ + +.....+..+.+
T Consensus 116 rDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~ 192 (207)
T COG1999 116 RDTPEVLKKYAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEP 192 (207)
T ss_pred CCCHHHHHHHhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCC
Confidence 677999999999888999999999 3666665 444555555553 3 444444444433
No 48
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=32.06 E-value=52 Score=22.18 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhcccCCCceEEEEeCCc
Q 034278 38 KSIAAHIKKEFDKRYGGGWQCVVGSNF 64 (99)
Q Consensus 38 ~~iA~~iK~~lD~~yg~~WhcIVG~~F 64 (99)
...|+.|++.|..+||+...|.|..-|
T Consensus 2 ~~aA~Al~eal~~~~~~~~~v~v~D~~ 28 (169)
T PF06925_consen 2 NSAARALAEALERRRGPDAEVEVVDFL 28 (169)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEehH
Confidence 357899999999999999999988743
No 49
>KOG3252 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.57 E-value=79 Score=23.09 Aligned_cols=34 Identities=9% Similarity=0.116 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHh
Q 034278 13 MPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKE 47 (99)
Q Consensus 13 M~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~ 47 (99)
+.+.||.. +.....+++.|+.|++.+++.++...
T Consensus 2 ~feq~qs~-~~e~l~ginryNPE~latLe~yVq~q 35 (217)
T KOG3252|consen 2 QFEQMQSN-VGELLVGINRYNPENLATLENYVQAQ 35 (217)
T ss_pred cchHHHHH-HHHHHHhcccCChhHHHHHHHHHHHH
Confidence 34678888 78889999999998888888887643
No 50
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=31.23 E-value=57 Score=18.13 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhccc
Q 034278 13 MPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKR 51 (99)
Q Consensus 13 M~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~ 51 (99)
||+++.+.+-+.|..--+..+ .+|...|.+.|.+.
T Consensus 11 lP~~l~~~lk~~A~~~gRS~N----sEIv~~L~~~l~~e 45 (50)
T PF03869_consen 11 LPEELKEKLKERAEENGRSMN----SEIVQRLEEALKKE 45 (50)
T ss_dssp CEHHHHHHHHHHHHHTTS-HH----HHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCChH----HHHHHHHHHHHhcc
Confidence 888888888777665433222 67888888888764
No 51
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=30.79 E-value=33 Score=22.76 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEeCCcceeEE
Q 034278 36 DCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFT 69 (99)
Q Consensus 36 ~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vt 69 (99)
+..++++.|...++++ -.+||.|+|+.+.
T Consensus 51 ~~~~~~~~~~~~~~~~-----~~lvG~S~Gg~~a 79 (245)
T TIGR01738 51 SLADAAEAIAAQAPDP-----AIWLGWSLGGLVA 79 (245)
T ss_pred CHHHHHHHHHHhCCCC-----eEEEEEcHHHHHH
Confidence 3578888888877632 4689999999775
No 52
>PF06884 DUF1264: Protein of unknown function (DUF1264); InterPro: IPR010686 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 200 residues long. Some family members are annotated as putative lipoproteins.
Probab=30.72 E-value=37 Score=24.13 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=14.4
Q ss_pred HHHHHHHhhcccCCCceEE
Q 034278 40 IAAHIKKEFDKRYGGGWQC 58 (99)
Q Consensus 40 iA~~iK~~lD~~yg~~Whc 58 (99)
+...+-+.+-+.||.+||-
T Consensus 98 ae~~~m~~l~~tYGKt~Ht 116 (171)
T PF06884_consen 98 AEKAEMEKLVKTYGKTWHT 116 (171)
T ss_pred HHHHHHHHHHhhhCCeEEe
Confidence 4456667778899999884
No 53
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=30.22 E-value=1.3e+02 Score=18.32 Aligned_cols=18 Identities=11% Similarity=0.338 Sum_probs=10.2
Q ss_pred cEEEEEeCCEEEEEeecC
Q 034278 74 TFIYFQLETLKFLIFKGS 91 (99)
Q Consensus 74 ~~i~F~~~~~~vLifkt~ 91 (99)
.++++..++..+.++..+
T Consensus 34 ~~~~~~~~~~~l~l~~~~ 51 (120)
T cd08350 34 GYMILRRGDLELHFFAHP 51 (120)
T ss_pred CEEEEEcCCEEEEEEecC
Confidence 455566666555565543
No 54
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=30.15 E-value=48 Score=25.76 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcc------cCCCce-EEEEeC-Ccc
Q 034278 38 KSIAAHIKKEFDK------RYGGGW-QCVVGS-NFG 65 (99)
Q Consensus 38 ~~iA~~iK~~lD~------~yg~~W-hcIVG~-~Fg 65 (99)
.+|++.|.+...- .++..| ||.||+ +|.
T Consensus 226 ~nipemieeFk~G~~i~~d~~~~~~~~~~vGkl~mt 261 (323)
T KOG1569|consen 226 RNIPEMIEEFKNGHEIKFDEERENILQIKVGKLDMT 261 (323)
T ss_pred cchHHHHHHhhCCcccccccccCceeeeeeeeecCC
Confidence 4577666665544 357889 999999 875
No 55
>PF10045 DUF2280: Uncharacterized conserved protein (DUF2280); InterPro: IPR018738 This entry is represented by Burkholderia phage Bups phi1, Orf2.36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.56 E-value=85 Score=20.54 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhcCccCHHHHHHHHHHhhcc
Q 034278 19 LYAMASASQALDVYDVFDCKSIAAHIKKEFDK 50 (99)
Q Consensus 19 ~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~ 50 (99)
.++...+..+|.-|++. .++|+.+|++|.-
T Consensus 6 ~~vK~FIVQ~LAcfdTP--s~v~~aVk~eFgi 35 (104)
T PF10045_consen 6 KEVKAFIVQSLACFDTP--SEVAEAVKEEFGI 35 (104)
T ss_pred HHHHHHHHHHHHhhCCH--HHHHHHHHHHhCC
Confidence 34445566788888876 8899999998853
No 56
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=29.23 E-value=73 Score=16.92 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=16.9
Q ss_pred HHHHHHHhhcCccCHHHHHHHHH
Q 034278 23 ASASQALDVYDVFDCKSIAAHIK 45 (99)
Q Consensus 23 ~~a~~a~~~~~~~~~~~iA~~iK 45 (99)
+...+|+.+|+..+.+.||+.+.
T Consensus 10 ~~l~~~v~~~g~~~W~~Ia~~~~ 32 (48)
T PF00249_consen 10 EKLLEAVKKYGKDNWKKIAKRMP 32 (48)
T ss_dssp HHHHHHHHHSTTTHHHHHHHHHS
T ss_pred HHHHHHHHHhCCcHHHHHHHHcC
Confidence 45567888888765688888775
No 57
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=29.17 E-value=86 Score=20.89 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHh
Q 034278 13 MPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKE 47 (99)
Q Consensus 13 M~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~ 47 (99)
|+.+++.-..++|.-|...+--++-..||..|++.
T Consensus 1 M~~~l~~lLAElAL~atG~HcH~EA~tIa~wL~~~ 35 (116)
T PF09477_consen 1 MNRELRRLLAELALMATGHHCHQEANTIADWLEQE 35 (116)
T ss_dssp --HHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhC
Confidence 78899999999999998877643234567666643
No 58
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=28.97 E-value=66 Score=21.09 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhcCccC---HHHHHHHHHHhhcccCCCceE
Q 034278 19 LYAMASASQALDVYDVFD---CKSIAAHIKKEFDKRYGGGWQ 57 (99)
Q Consensus 19 ~~~~~~a~~a~~~~~~~~---~~~iA~~iK~~lD~~yg~~Wh 57 (99)
..++......+++++.-. ....++.|.+.|-.+|-+.|.
T Consensus 6 ~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HWy 47 (108)
T smart00099 6 AAAVNFITSLLRKHNKLSKRRVEIFAEKLTRLLKEKYKNHWY 47 (108)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345667777777775321 345678888888888866665
No 59
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=28.77 E-value=47 Score=26.24 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.0
Q ss_pred CCceEEEEeCCcceeEEE
Q 034278 53 GGGWQCVVGSNFGCFFTH 70 (99)
Q Consensus 53 g~~WhcIVG~~Fgs~vth 70 (99)
|+-||||+--.....+|+
T Consensus 277 ~GWWHvVlNle~TIAiTq 294 (407)
T KOG2130|consen 277 SGWWHVVLNLEPTIAITQ 294 (407)
T ss_pred CCeEEEEeccCceeeeee
Confidence 779999998887777776
No 60
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=28.60 E-value=72 Score=24.70 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHhhcccC
Q 034278 36 DCKSIAAHIKKEFDKRY 52 (99)
Q Consensus 36 ~~~~iA~~iK~~lD~~y 52 (99)
.+++.|+.||+.|+++|
T Consensus 193 ~~~~~A~~lk~~F~~~F 209 (370)
T PF06202_consen 193 RYREWAERLKESFEKRF 209 (370)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36789999999999999
No 61
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=28.51 E-value=73 Score=25.52 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=34.1
Q ss_pred EeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcc
Q 034278 9 EDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDK 50 (99)
Q Consensus 9 ~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~ 50 (99)
...+|++.+...|...|....+.+.-. +++.+||.+.|+.
T Consensus 200 mG~~~~~~Di~~i~~~ae~i~~L~~~R--~~l~~Yi~~~M~~ 239 (395)
T COG1498 200 MGADLSEEDIDNIRELAEIILELYELR--EQLEEYIESKMSE 239 (395)
T ss_pred cccCCChhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 467899999999999999999988865 7899999888864
No 62
>cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1). The RasGAP Ira1/2 proteins are negative regulators of the Ras-cAMP signaling pathway and conserved from yeast to human. In yeast Ras proteins are activated by GEFs, and inhibited by two GAPs, Ira1 and Ira2. Ras proteins activate the cAMP/protein kinase A (PKA) pathway, which controls metabolism, stress resistance, growth, and meiosis. Recent studies showed that the kelch proteins Gpb1 and Gpb2 inhibit Ras activity via association with Ira1 and Ira2. Gpb1/2 bind to a conserved C-terminal domain of Ira1/2, and loss of Gpb1/2 results in a destabilization of Ira1 and Ira2, leading to elevated levels of Ras2-GTP and uninhibited cAMP-PKA signaling. Since the Gpb1/2 binding domain on Ira1/2 is conserved in the human neurofibromin prote
Probab=28.28 E-value=46 Score=25.20 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=23.9
Q ss_pred HHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEe
Q 034278 26 SQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVG 61 (99)
Q Consensus 26 ~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG 61 (99)
.+.+...+. .++.+|+.|++.+.++|...+.-+||
T Consensus 140 ~~s~~~~P~-~lr~i~~~l~~~v~~kfp~~~~~~Vg 174 (323)
T cd05392 140 ISSLDRFPP-ELREICHHIYEVVSEKFPDSALSAVG 174 (323)
T ss_pred HHhHHhCCH-HHHHHHHHHHHHHHHHCCCchHHHHH
Confidence 334444443 25889999999999999875544444
No 63
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=28.20 E-value=40 Score=23.51 Aligned_cols=14 Identities=50% Similarity=0.546 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhcc
Q 034278 37 CKSIAAHIKKEFDK 50 (99)
Q Consensus 37 ~~~iA~~iK~~lD~ 50 (99)
.|+||..||+-||.
T Consensus 122 IK~IAsaIK~lLdA 135 (154)
T PF06840_consen 122 IKEIASAIKKLLDA 135 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 48999999999995
No 64
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=28.18 E-value=44 Score=23.11 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcccC----CCceEEEEeCCcceeEE
Q 034278 38 KSIAAHIKKEFDKRY----GGGWQCVVGSNFGCFFT 69 (99)
Q Consensus 38 ~~iA~~iK~~lD~~y----g~~WhcIVG~~Fgs~vt 69 (99)
+++++++-+.+|..| .+..-+|.|++|||==|
T Consensus 27 ~~l~~~~f~~~~p~f~~~~~~g~iiVaG~NFG~GSS 62 (154)
T TIGR02087 27 DELASHAMEGIDPEFAKKVRPGDVIVAGKNFGCGSS 62 (154)
T ss_pred HHHHhhccCcCCchhhhcCCCCcEEEcCCcccCCcc
Confidence 577777776666544 44445556669997433
No 65
>PF08015 Pheromone: Fungal mating-type pheromone; InterPro: IPR012597 This family corresponds to mating-type pheromone proteins. The homobasidiomycetes, or mushroom fungi, have arguably the most complex mating system of all known organisms. Many species possess a mating system known as bifactorial incompatibility, where two unlinked loci control the mating-type of an individual incompatibility loci (the A and B mating-type loci). Each A mating-type sublocus encodes a pair of divergently transcribed homeodomain transcription factors while the genes responsible for B mating-type activity encode lipopeptide pheromones and G-protein -coupled pheromone receptors [].; GO: 0000772 mating pheromone activity, 0016020 membrane
Probab=28.13 E-value=33 Score=20.17 Aligned_cols=13 Identities=54% Similarity=1.145 Sum_probs=8.2
Q ss_pred hcccCCC--ceEEEE
Q 034278 48 FDKRYGG--GWQCVV 60 (99)
Q Consensus 48 lD~~yg~--~WhcIV 60 (99)
.|+..|+ +|-|||
T Consensus 55 ~Er~~~g~~~~fCVI 69 (69)
T PF08015_consen 55 FERRGGGGAGAFCVI 69 (69)
T ss_pred ccccCCCCceEEEeC
Confidence 3455444 788886
No 66
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=27.73 E-value=61 Score=27.08 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcccCCCceEEEEeCCcc
Q 034278 37 CKSIAAHIKKEFDKRYGGGWQCVVGSNFG 65 (99)
Q Consensus 37 ~~~iA~~iK~~lD~~yg~~WhcIVG~~Fg 65 (99)
.++++..|++.|..-.|..|.|.|.+..|
T Consensus 504 ~~~~~~~l~~~l~~~t~~~w~v~~~~~~~ 532 (598)
T PRK09111 504 PRDLAQRLARKLEEWTGRRWVVSVSREGG 532 (598)
T ss_pred ChHHHHHHHHHHHHHhCCceEEEEecCCC
Confidence 37899999999999999999999987654
No 67
>PRK10425 DNase TatD; Provisional
Probab=27.43 E-value=1.8e+02 Score=21.38 Aligned_cols=49 Identities=16% Similarity=0.147 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHhhcCc-------cCHHHHHHHHHHhhcccCCCceEEEEeC
Q 034278 14 PVKMQLYAMASASQALDVYDV-------FDCKSIAAHIKKEFDKRYGGGWQCVVGS 62 (99)
Q Consensus 14 ~~~~q~~~~~~a~~a~~~~~~-------~~~~~iA~~iK~~lD~~yg~~WhcIVG~ 62 (99)
+.+.|+++.+.-.+...+++. +..+++.+-||+...+.-++.+||.-|.
T Consensus 102 ~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~i~H~fsG~ 157 (258)
T PRK10425 102 TPEEQERAFVAQLAIAAELNMPVFMHCRDAHERFMALLEPWLDKLPGAVLHCFTGT 157 (258)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHhccCCCCeEEEecCCC
Confidence 356788999988888888752 2247788888876443337899998886
No 68
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=26.67 E-value=70 Score=23.06 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhcccCCCceEEEE
Q 034278 38 KSIAAHIKKEFDKRYGGGWQCVV 60 (99)
Q Consensus 38 ~~iA~~iK~~lD~~yg~~WhcIV 60 (99)
.++++.|++.+-++|++.++|.|
T Consensus 254 ~~i~~~i~~~l~~~~~~i~~v~I 276 (284)
T PF01545_consen 254 HEIRERIEKRLREKFPGIYDVTI 276 (284)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEE
Confidence 45899999999999999999776
No 69
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=26.29 E-value=1.3e+02 Score=18.48 Aligned_cols=24 Identities=4% Similarity=-0.132 Sum_probs=20.4
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHH
Q 034278 4 GKALIEDTDMPVKMQLYAMASASQ 27 (99)
Q Consensus 4 ~~~~V~~~dM~~~~q~~~~~~a~~ 27 (99)
.+.+|+..|-+++..+++.+.|..
T Consensus 25 akLViiA~Da~~~~~k~i~~~c~~ 48 (82)
T PRK13601 25 VLQVYIAKDAEEHVTKKIKELCEE 48 (82)
T ss_pred eeEEEEeCCCCHHHHHHHHHHHHh
Confidence 467889999999999999887765
No 70
>PRK10667 Hha toxicity attenuator; Provisional
Probab=26.05 E-value=91 Score=20.91 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhc----CccCHHHHHHHHHHhhcccC
Q 034278 19 LYAMASASQALDVY----DVFDCKSIAAHIKKEFDKRY 52 (99)
Q Consensus 19 ~~~~~~a~~a~~~~----~~~~~~~iA~~iK~~lD~~y 52 (99)
++.++-+....-.| +.+ .++++.|-++||.+|
T Consensus 49 NeLIEHIa~f~~~fKIKYp~~--~~l~~~ideYLDeTy 84 (122)
T PRK10667 49 NELIEHIATFALNFKIKYPED--SKLIEQIDEYLDDTY 84 (122)
T ss_pred HHHHHHHHHHHHHhhccCCcH--hhHHHHHHHHHHHHH
Confidence 44444444444434 444 789999999999986
No 71
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=25.93 E-value=29 Score=24.36 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCC
Q 034278 19 LYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGG 54 (99)
Q Consensus 19 ~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~ 54 (99)
.--+++|..+++.++.. + -.+.|++..|++|..
T Consensus 115 ~vCl~ia~~a~~~~~~G--k-s~~eIR~~ID~kYk~ 147 (158)
T PF13798_consen 115 GVCLDIAVQAVQMYQEG--K-SPKEIRQYIDEKYKE 147 (158)
T ss_pred HHHHHHHHHHHHHHHcC--C-CHHHHHHHHHHHHHh
Confidence 34567788888877643 3 367788888988853
No 72
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=25.53 E-value=40 Score=23.40 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=13.1
Q ss_pred CCceEEEEeCCcceeEE
Q 034278 53 GGGWQCVVGSNFGCFFT 69 (99)
Q Consensus 53 g~~WhcIVG~~Fgs~vt 69 (99)
|-.|-+|.|++||+==|
T Consensus 68 g~~~iIVaG~nyG~GSS 84 (149)
T cd01578 68 GIKWVVIGDENYGEGSS 84 (149)
T ss_pred CCCeEEEccCccCCCCc
Confidence 65798999999996443
No 73
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=24.99 E-value=2e+02 Score=18.60 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=27.2
Q ss_pred HHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEE
Q 034278 41 AAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQ 79 (99)
Q Consensus 41 A~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~ 79 (99)
+..+.+.|.++++..+.+ |++|+..--+..+..+.+.
T Consensus 28 ~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~di~ 64 (126)
T PF01743_consen 28 PEEFAKLLAKKLGGVFVV--GKRFGTVRVVFGGGSIDIA 64 (126)
T ss_dssp HHHHHHHHCTTCCEEEEE--ETTTTEEEEEETTCEEEEE
T ss_pred HHHHHHHHHhhccccccc--ccccceeeecCCCcccccc
Confidence 456677788888888777 9999987777666665543
No 74
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=24.98 E-value=1.2e+02 Score=18.98 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=17.9
Q ss_pred HHHHHhhcCcc--CHHHHHHHHHHhhcccCC
Q 034278 25 ASQALDVYDVF--DCKSIAAHIKKEFDKRYG 53 (99)
Q Consensus 25 a~~a~~~~~~~--~~~~iA~~iK~~lD~~yg 53 (99)
++.++++..++ .++++|+.+++.+|+-+.
T Consensus 19 i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~ 49 (101)
T PF14372_consen 19 IKDLLRDWNNDDPDLKNMAKKMKEKFDKYWK 49 (101)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 33444444433 256788888888887654
No 75
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=24.78 E-value=1.8e+02 Score=17.97 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhcCccC-HHHHHHHHHHhhcccC
Q 034278 15 VKMQLYAMASASQALDVYDVFD-CKSIAAHIKKEFDKRY 52 (99)
Q Consensus 15 ~~~q~~~~~~a~~a~~~~~~~~-~~~iA~~iK~~lD~~y 52 (99)
++...++--+...|..-++... .-..|..|++.|++++
T Consensus 64 ~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 64 QEFAADVRLMFSNCYKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 4566667667777766444321 3568899999998874
No 76
>TIGR03384 betaine_BetI transcriptional repressor BetI. BetI is a DNA-binding transcriptional repressor of the bet (betaine) regulon. In sequence, it is related to TetR (pfam00440). Choline, through BetI, induces the expression of the betaine biosynthesis genes betA and betB by derepression. The choline porter gene betT is also part of this regulon in Escherichia coli. Note that a different transcriptional regulator, ArcA, controls the expression of bet regulon genes in response to oxygen, as BetA is an oxygen-dependent enzyme.
Probab=24.71 E-value=1.5e+02 Score=19.47 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcc--CHHHHHH
Q 034278 12 DMPVKMQLYAMASASQALDVYDVF--DCKSIAA 42 (99)
Q Consensus 12 dM~~~~q~~~~~~a~~a~~~~~~~--~~~~iA~ 42 (99)
-|.++.++.|++.|.+.+.+.+-. ...+||+
T Consensus 4 ~~~~~rr~~Il~aA~~lf~~~G~~~~s~~~IA~ 36 (189)
T TIGR03384 4 GMEPIRRAELIDATIESIGERGSLDVTIAQIAR 36 (189)
T ss_pred cchhHHHHHHHHHHHHHHHhcCcccCCHHHHHH
Confidence 467788999999999999987632 1355554
No 77
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=24.66 E-value=42 Score=28.95 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=29.8
Q ss_pred CCCceEEEEeCCcceeEEEcCCcEEE-------------EEeCCEEEEEeecCCCCCC
Q 034278 52 YGGGWQCVVGSNFGCFFTHTEGTFIY-------------FQLETLKFLIFKGSSSPPP 96 (99)
Q Consensus 52 yg~~WhcIVG~~Fgs~vth~~~~~i~-------------F~~~~~~vLifkt~~~~~~ 96 (99)
-.+..||||...|||.+++-.+--++ ...|+++=|+=-....|-|
T Consensus 585 d~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~P 642 (873)
T KOG4194|consen 585 DEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRP 642 (873)
T ss_pred cCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCc
Confidence 36799999999999999875543332 2235566555555555554
No 78
>PF08594 UPF0300: Uncharacterised protein family (UPF0300); InterPro: IPR013903 This entry of proteins appear to be specific to Schizosaccharomyces pombe (Fission yeast).
Probab=24.55 E-value=2.4e+02 Score=20.74 Aligned_cols=19 Identities=21% Similarity=0.552 Sum_probs=16.1
Q ss_pred ceEEEEeCCcceeEEEcCC
Q 034278 55 GWQCVVGSNFGCFFTHTEG 73 (99)
Q Consensus 55 ~WhcIVG~~Fgs~vth~~~ 73 (99)
.|=||+.++|-|++--+..
T Consensus 95 ~W~~I~~k~F~c~I~l~~~ 113 (215)
T PF08594_consen 95 SWIAICSKNFMCNIHLDQP 113 (215)
T ss_pred cEEEEecCcceEEEEecCC
Confidence 8999999999999875544
No 79
>PRK06683 hypothetical protein; Provisional
Probab=24.53 E-value=1.5e+02 Score=18.11 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=20.4
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHH
Q 034278 4 GKALIEDTDMPVKMQLYAMASASQ 27 (99)
Q Consensus 4 ~~~~V~~~dM~~~~q~~~~~~a~~ 27 (99)
.+.+++..|.++...+++.+.|..
T Consensus 28 aklViiA~Da~~~~~~~i~~~~~~ 51 (82)
T PRK06683 28 VKEVVIAEDADMRLTHVIIRTALQ 51 (82)
T ss_pred eeEEEEECCCCHHHHHHHHHHHHh
Confidence 467889999999999999888765
No 80
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=23.93 E-value=1.6e+02 Score=23.66 Aligned_cols=45 Identities=7% Similarity=0.211 Sum_probs=32.8
Q ss_pred HHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEeCCEEEEEeecCC
Q 034278 44 IKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLETLKFLIFKGSS 92 (99)
Q Consensus 44 iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~vLifkt~~ 92 (99)
...++++-|+++|+.|-=. |.+ -++|-|+-+.+++.-++|+|..+
T Consensus 27 f~~E~~~IF~~~W~~v~h~---sel-p~~GDy~t~~ig~~pviv~R~~d 71 (438)
T TIGR03228 27 FDLEMELIFEKNWIYACHE---SEL-PNNHDFVTVRAGRQPMIVTRDGK 71 (438)
T ss_pred HHHHHHHHHhhCCEEEEEH---HHC-CCCCCeEEEEECCeEEEEEECCC
Confidence 4467777789999987533 222 34578888999999999998643
No 81
>CHL00168 pbsA heme oxygenase; Provisional
Probab=23.73 E-value=95 Score=22.93 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhc
Q 034278 11 TDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFD 49 (99)
Q Consensus 11 ~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD 49 (99)
-+++++.+..+++.|+.|+..... -..+++..+++.+.
T Consensus 179 l~l~e~e~~~iI~EA~~AF~lN~~-vf~eL~~~~~~~~~ 216 (238)
T CHL00168 179 LPLSDDQIQNIIAEANIAFNLNMK-MFQELNSSFIKIIT 216 (238)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 368999999999999999985432 12455555555443
No 82
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=23.39 E-value=1.7e+02 Score=21.47 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCC
Q 034278 19 LYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGG 54 (99)
Q Consensus 19 ~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~ 54 (99)
+.+.++|++++.+++. +.+++-..|-+.|-++|++
T Consensus 34 ~~l~~ia~~~ia~~~~-~~~~~~~~l~~~L~~~y~~ 68 (216)
T PF04622_consen 34 KVLHEIAKKAIARHPN-DTEEILSDLVDELRKKYPD 68 (216)
T ss_pred HHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHhHCCC
Confidence 3455677777777764 3467888888888888887
No 83
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=23.34 E-value=75 Score=23.81 Aligned_cols=60 Identities=15% Similarity=0.359 Sum_probs=31.5
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHHHHhhcCc--cCHHHHHHHHHHhhcc----cC---C---CceEEEEeC-CcceeE
Q 034278 4 GKALIEDTDMPVKMQLYAMASASQALDVYDV--FDCKSIAAHIKKEFDK----RY---G---GGWQCVVGS-NFGCFF 68 (99)
Q Consensus 4 ~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~--~~~~~iA~~iK~~lD~----~y---g---~~WhcIVG~-~Fgs~v 68 (99)
+++.+...|.+.+.-. -.+.+..... .+..++++++-+.+|. +| | +.+.+|||. +|||==
T Consensus 71 Grv~k~gDNIdTD~Ii-----Pa~~l~~~~sn~~~~~~l~~~~F~~l~~~~~~r~v~~Gd~~~~~~IIVaG~NFGcGS 143 (246)
T PLN00072 71 GLCFVVGDNIDTDQII-----PAEYLTLVPSKPDEYEKLGSYALIGLPAFYKTRFVEPGEMKTKYSIIIGGENFGCGS 143 (246)
T ss_pred EeEEEeCCCcchhhcc-----cHHHhccccccCCCHHHHHHhhhccCCcchhhcccCCCCCCCCceEEEecCcccCCC
Confidence 4455566666665221 1122322211 1346788888766652 22 2 246777775 999743
No 84
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=23.32 E-value=1.3e+02 Score=18.12 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=15.8
Q ss_pred EEEcCCcE--EEEEeC--CEEEEEeecCC
Q 034278 68 FTHTEGTF--IYFQLE--TLKFLIFKGSS 92 (99)
Q Consensus 68 vth~~~~~--i~F~~~--~~~vLifkt~~ 92 (99)
+.|+++.| +.+++. +..++||+||.
T Consensus 31 ~~YePe~fpgl~~r~~~p~~t~~IF~sGk 59 (86)
T PF00352_consen 31 VEYEPERFPGLIYRLRNPKATVLIFSSGK 59 (86)
T ss_dssp EEEETTTESSEEEEETTTTEEEEEETTSE
T ss_pred cEEeeccCCeEEEeecCCcEEEEEEcCCE
Confidence 46666633 445553 67888888874
No 85
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.22 E-value=1.8e+02 Score=19.65 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhccc----CCC
Q 034278 38 KSIAAHIKKEFDKR----YGG 54 (99)
Q Consensus 38 ~~iA~~iK~~lD~~----yg~ 54 (99)
.+.|+.|+..|.++ ||+
T Consensus 95 ~e~A~eLr~~L~~kGvr~fG~ 115 (128)
T PF09868_consen 95 PEEAKELRSILVKKGVRSFGS 115 (128)
T ss_pred HHHHHHHHHHHHHhhHHHhCC
Confidence 68999999999998 665
No 86
>PF15586 Imm47: Immunity protein 47
Probab=22.85 E-value=2e+02 Score=18.83 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhcCccCHHHHHHHHHHhhcccC
Q 034278 20 YAMASASQALDVYDVFDCKSIAAHIKKEFDKRY 52 (99)
Q Consensus 20 ~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~y 52 (99)
.|.+...+-+.++..++..++|+.|.+.+.=.|
T Consensus 80 ~I~~~i~~~i~~c~~~~W~~~~~kLsr~f~WEf 112 (116)
T PF15586_consen 80 EIKKTIERIIESCEGDDWDEIAEKLSRYFAWEF 112 (116)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHheeeec
Confidence 455555556666666667899999998876444
No 87
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=22.63 E-value=81 Score=20.35 Aligned_cols=29 Identities=28% Similarity=0.498 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhcc-------------cCCCceEEEEeCCcc
Q 034278 37 CKSIAAHIKKEFDK-------------RYGGGWQCVVGSNFG 65 (99)
Q Consensus 37 ~~~iA~~iK~~lD~-------------~yg~~WhcIVG~~Fg 65 (99)
+=|+|..|+++=|- -|-+.=||++|+-|+
T Consensus 24 LydL~~eI~kETeFdillfS~igv~~GD~~~ss~~alG~~~~ 65 (100)
T PF10655_consen 24 LYDLANEIDKETEFDILLFSTIGVSNGDFISSSHCALGNPFG 65 (100)
T ss_pred HHHHHHHhcccceeeeeeeeeeccccCccccccchhhccHHH
Confidence 46789999876442 234567888887654
No 88
>PRK13294 F420-0--gamma-glutamyl ligase; Provisional
Probab=22.59 E-value=99 Score=24.92 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEeCCcceeE
Q 034278 36 DCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFF 68 (99)
Q Consensus 36 ~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~v 68 (99)
|...-|+.|++.|.+++|..=-|||..+||--.
T Consensus 124 dp~~sa~~l~~~l~~~~g~~v~vii~Dt~gr~~ 156 (448)
T PRK13294 124 DPDASAAALRAGLRERLGVDVAVVVTDTMGRAW 156 (448)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEEEecCCCCcc
Confidence 567789999999999999999999999998643
No 89
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=22.45 E-value=97 Score=21.37 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcccCCCceEEEEe
Q 034278 38 KSIAAHIKKEFDKRYGGGWQCVVG 61 (99)
Q Consensus 38 ~~iA~~iK~~lD~~yg~~WhcIVG 61 (99)
.|+++.|+++-..+ |..|+.|=-
T Consensus 37 ~em~~RI~~H~~~R-~~~w~tiE~ 59 (167)
T PF02283_consen 37 EEMRERIARHRQRR-PKGWITIEE 59 (167)
T ss_dssp HHHHHHHHHHHHHS-STCEEEEE-
T ss_pred HHHHHHHHHHHHhC-CCCcEEEec
Confidence 68999999999999 999999865
No 90
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=22.19 E-value=2.6e+02 Score=18.89 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=26.0
Q ss_pred hhcccCCCceEEEEeCCcceeEEEcCCcEEEEEeCCEEEEEeecCC
Q 034278 47 EFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLETLKFLIFKGSS 92 (99)
Q Consensus 47 ~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~vLifkt~~ 92 (99)
.=|+.||..|.-+|..+-.+-++.+.-.. ..++.+=|+|.-+.
T Consensus 14 ~P~~a~gt~~~~~Vs~~vsTIfnFDiP~~---~~~k~CsL~F~fP~ 56 (143)
T PF09792_consen 14 NPNKAFGTSYNGQVSSTVSTIFNFDIPAS---YQGKTCSLVFLFPT 56 (143)
T ss_pred CCCCcCCCcceeEECCcEEEEEEeccCCC---CCCCeEEEEEEcCC
Confidence 34677888888877777444443332222 23567777777666
No 91
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=22.11 E-value=59 Score=24.25 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhcccCCCceEEEEeCCcceeEEE
Q 034278 38 KSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTH 70 (99)
Q Consensus 38 ~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth 70 (99)
.+.|+.|...+|.---..-+++||.|+|..+.-
T Consensus 121 ~~~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~ 153 (343)
T PRK08775 121 ADQADAIALLLDALGIARLHAFVGYSYGALVGL 153 (343)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEEECHHHHHHH
Confidence 578888888888653234567999999987654
No 92
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=21.87 E-value=1.5e+02 Score=18.94 Aligned_cols=24 Identities=8% Similarity=-0.039 Sum_probs=20.7
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHH
Q 034278 4 GKALIEDTDMPVKMQLYAMASASQ 27 (99)
Q Consensus 4 ~~~~V~~~dM~~~~q~~~~~~a~~ 27 (99)
.+.+|+.+|.+++.++++.+.|..
T Consensus 34 ~~lVI~A~D~s~~~kkki~~~~~~ 57 (104)
T PRK05583 34 VYLIIISNDISENSKNKFKNYCNK 57 (104)
T ss_pred ceEEEEeCCCCHhHHHHHHHHHHH
Confidence 457889999999999999988764
No 93
>PF06793 UPF0262: Uncharacterised protein family (UPF0262); InterPro: IPR008321 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.79 E-value=98 Score=21.71 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhccc
Q 034278 15 VKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKR 51 (99)
Q Consensus 15 ~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~ 51 (99)
...|.+++++++.++. +|=|+-|++.|+-|
T Consensus 107 ~p~qIEaIDMgRRGlH-------NEGa~lL~eRL~GK 136 (158)
T PF06793_consen 107 TPSQIEAIDMGRRGLH-------NEGAELLQERLEGK 136 (158)
T ss_pred CHhhhhhhhhhhhccc-------hHHHHHHHHHhcCC
Confidence 3467888888888887 67888888888765
No 94
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=21.73 E-value=2.3e+02 Score=18.56 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=26.0
Q ss_pred cCCCceEEEEeC-CcceeEEEcCCcEEEEEeCCEEEEEeecC
Q 034278 51 RYGGGWQCVVGS-NFGCFFTHTEGTFIYFQLETLKFLIFKGS 91 (99)
Q Consensus 51 ~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~vLifkt~ 91 (99)
.|...|+.|.-. +. .++.+.-|.+++..++|+|..
T Consensus 10 ~~~~~W~~v~~~~el------~~g~~~~~~~~g~~i~l~r~~ 45 (136)
T cd03548 10 GFRNHWYPALFSHEL------EEGEPKGIQLCGEPILLRRVD 45 (136)
T ss_pred CcccCcEEEEEHHHC------CCCCeEEEEECCcEEEEEecC
Confidence 567889987754 33 247788888998899999853
No 95
>cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP. Once the Ras regulator p120GAP, a member of the GAP protein family, is recruited to the membrane, it is transiently immobilized to interact with Ras-GTP. The down regulation of Ras by p120GAP is a critical step in the regulation of many cellular processes, which is disrupted in approximately 30% of human cancers. p120GAP contains SH2, SH3, PH, calcium- and lipid-binding domains, suggesting its involvement in a complex network of cellular interactions in vivo.
Probab=21.72 E-value=71 Score=24.56 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=23.9
Q ss_pred HHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceE
Q 034278 23 ASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQ 57 (99)
Q Consensus 23 ~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~Wh 57 (99)
+.+..++..++.. ++.+++.|++.+.++|...+.
T Consensus 137 ~~I~~S~~~~P~~-lr~i~~~l~~~v~~kfp~~~~ 170 (315)
T cd05391 137 EKIFMAAEILPPT-LRYIYGCLQKSVQAKWPTNTT 170 (315)
T ss_pred HHHHHhHHhCCHH-HHHHHHHHHHHHHHHCCCchh
Confidence 3333444445532 588999999999999987664
No 96
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=21.43 E-value=1.1e+02 Score=20.58 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhc----CccCHHHHHHHHHHhhcccC
Q 034278 19 LYAMASASQALDVY----DVFDCKSIAAHIKKEFDKRY 52 (99)
Q Consensus 19 ~~~~~~a~~a~~~~----~~~~~~~iA~~iK~~lD~~y 52 (99)
++.++-+....-.| +.+ .++...|-++||.+|
T Consensus 49 NeLIEHIA~F~~~fKIKYp~~--~~l~~~ideYLDeTy 84 (122)
T PF10757_consen 49 NELIEHIAAFIWNFKIKYPDE--SDLIELIDEYLDETY 84 (122)
T ss_pred HHHHHHHHHHHHhheeccCcH--hhHHHHHHHHHHHHH
Confidence 44444444444434 444 789999999999986
No 97
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=21.34 E-value=1.7e+02 Score=17.73 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=20.9
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHHH
Q 034278 4 GKALIEDTDMPVKMQLYAMASASQA 28 (99)
Q Consensus 4 ~~~~V~~~dM~~~~q~~~~~~a~~a 28 (99)
.+.+|+..|.++.....+.+.|.+.
T Consensus 28 aklViiA~D~~~~~~~~i~~~c~~~ 52 (82)
T PRK13602 28 VKEVVVAEDADPRLTEKVEALANEK 52 (82)
T ss_pred eeEEEEECCCCHHHHHHHHHHHHHc
Confidence 4578899999999999998888754
No 98
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=21.31 E-value=1.8e+02 Score=16.90 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhhcCc-cCHHHHHHHH
Q 034278 16 KMQLYAMASASQALDVYDV-FDCKSIAAHI 44 (99)
Q Consensus 16 ~~q~~~~~~a~~a~~~~~~-~~~~~iA~~i 44 (99)
+.|.+|++.+.+-++++.- --.+|||+.+
T Consensus 6 ~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~ 35 (65)
T PF01726_consen 6 ERQKEVLEFIREYIEENGYPPTVREIAEAL 35 (65)
T ss_dssp HHHHHHHHHHHHHHHHHSS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 5788999998888887641 1127777654
No 99
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=21.13 E-value=47 Score=21.14 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=6.1
Q ss_pred ceEEEEeC
Q 034278 55 GWQCVVGS 62 (99)
Q Consensus 55 ~WhcIVG~ 62 (99)
.=||+||.
T Consensus 89 yIhCsIGd 96 (97)
T PF10302_consen 89 YIHCSIGD 96 (97)
T ss_pred EEEEeccC
Confidence 34999995
No 100
>PRK13888 conjugal transfer protein TrbN; Provisional
Probab=20.94 E-value=31 Score=25.21 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=16.2
Q ss_pred HHHHHHhhcccCCCceEEE
Q 034278 41 AAHIKKEFDKRYGGGWQCV 59 (99)
Q Consensus 41 A~~iK~~lD~~yg~~WhcI 59 (99)
|-.|+..|++++|-.|.+|
T Consensus 91 AWILr~~i~~~~G~~W~AV 109 (206)
T PRK13888 91 AWRLRMHIRNDKGDLWTKA 109 (206)
T ss_pred HHHHHHHHHHhhCchHHHH
Confidence 4578899998899999986
No 101
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=20.82 E-value=50 Score=20.92 Aligned_cols=15 Identities=47% Similarity=0.689 Sum_probs=10.9
Q ss_pred ceEEEEeCCcceeEE
Q 034278 55 GWQCVVGSNFGCFFT 69 (99)
Q Consensus 55 ~WhcIVG~~Fgs~vt 69 (99)
.+=+|.|++||+==|
T Consensus 18 ~~ilVaG~nfG~GSS 32 (91)
T cd01577 18 GDIIVAGKNFGCGSS 32 (91)
T ss_pred CCEEEecCcccCCCc
Confidence 567788889997433
No 102
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=20.77 E-value=97 Score=24.02 Aligned_cols=33 Identities=27% Similarity=0.693 Sum_probs=26.2
Q ss_pred HhhcccCCCceEE-EEeCCcceeEEEcCCcEEEE
Q 034278 46 KEFDKRYGGGWQC-VVGSNFGCFFTHTEGTFIYF 78 (99)
Q Consensus 46 ~~lD~~yg~~Whc-IVG~~Fgs~vth~~~~~i~F 78 (99)
..|..+||..=|- |||+-||+.++-..|.|+|.
T Consensus 37 ~~~~~~yGa~~h~~iIGK~~G~~v~sskG~~vyl 70 (314)
T KOG2915|consen 37 GTFQTRYGALPHSDIIGKPYGSKVASSKGKFVYL 70 (314)
T ss_pred ceeeccccccchhheecCCccceeeecCCcEEEE
Confidence 3457788886554 89999999999988887775
No 103
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=20.72 E-value=2.2e+02 Score=19.01 Aligned_cols=13 Identities=31% Similarity=0.296 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHhh
Q 034278 36 DCKSIAAHIKKEF 48 (99)
Q Consensus 36 ~~~~iA~~iK~~l 48 (99)
+..++++.|++.|
T Consensus 179 ~~~~~~~~i~~~~ 191 (193)
T smart00331 179 PPAEIAQRILEEL 191 (193)
T ss_pred CHHHHHHHHHHHH
Confidence 3478888888776
No 104
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=20.71 E-value=61 Score=20.97 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhcccCCCceEEEEeCCcceeEE
Q 034278 37 CKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFT 69 (99)
Q Consensus 37 ~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vt 69 (99)
..+.|+.|.+.+|+.-.+.. ++||.|+|+.+.
T Consensus 49 ~~~~~~~l~~~l~~~~~~~~-~lvG~S~Gg~~a 80 (228)
T PF12697_consen 49 IEDYAEDLAELLDALGIKKV-ILVGHSMGGMIA 80 (228)
T ss_dssp HHHHHHHHHHHHHHTTTSSE-EEEEETHHHHHH
T ss_pred hhhhhhhhhhcccccccccc-cccccccccccc
Confidence 45677778888877655555 478999998764
No 105
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=20.41 E-value=2.4e+02 Score=19.70 Aligned_cols=34 Identities=21% Similarity=0.048 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHH
Q 034278 12 DMPVKMQLYAMASASQALDVYDVFDCKSIAAHIK 45 (99)
Q Consensus 12 dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK 45 (99)
+.++++|..++......+.+.+..+-+++|+.|-
T Consensus 113 ~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~ 146 (160)
T PF11841_consen 113 VSNQEIQTNAIALINALFLKADDSKRKEIAETLS 146 (160)
T ss_pred cCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3788999999999999999887554457776653
No 106
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=20.30 E-value=1.8e+02 Score=22.52 Aligned_cols=32 Identities=6% Similarity=0.066 Sum_probs=23.0
Q ss_pred HHHHHhhcCccCHHHHHHHHHHhhcccCCCceE
Q 034278 25 ASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQ 57 (99)
Q Consensus 25 a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~Wh 57 (99)
+...+.+++. .++.+++.|++.+.++|...++
T Consensus 162 I~~S~~~~P~-~lR~i~~~l~~~v~~kFp~~~~ 193 (333)
T cd05135 162 IVGSVSQCPP-VMRLTFKQLHKRVEERFPEAEN 193 (333)
T ss_pred HHhhHHhCCH-HHHHHHHHHHHHHHHHCCCCcc
Confidence 3333344443 2588999999999999988774
No 107
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=20.04 E-value=3.4e+02 Score=19.47 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCccCHHHHH---HHHHHhhcccC-CCceEEEEeC
Q 034278 11 TDMPVKMQLYAMASASQALDVYDVFDCKSIA---AHIKKEFDKRY-GGGWQCVVGS 62 (99)
Q Consensus 11 ~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA---~~iK~~lD~~y-g~~WhcIVG~ 62 (99)
-|+++...+.+.+.|..+=+.|+.+++-.++ ..|-+-| .-+ .|-|-| ||.
T Consensus 91 PDlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDLGKvl-~f~GepQWAV-vGD 144 (204)
T KOG1573|consen 91 PDLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDLGKVL-AFGGEPQWAV-VGD 144 (204)
T ss_pred CCCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH-HhcCCcceee-ecC
Confidence 4677777778888777777778877643333 3445556 223 347865 455
Done!