Query 034278
Match_columns 99
No_of_seqs 108 out of 545
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 20:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjs_A Dynein light chain moto 100.0 2E-44 7E-49 228.8 8.2 89 1-91 1-89 (89)
2 4ds1_A Dynein light chain 1, c 100.0 2E-42 6.9E-47 222.7 9.1 86 4-91 12-97 (97)
3 1yo3_A Dynein light chain 1; s 100.0 1.3E-41 4.5E-46 220.7 10.3 87 3-91 16-102 (102)
4 1use_A VAsp, vasodilator-stimu 83.1 1.6 5.4E-05 23.6 3.3 34 15-52 10-43 (45)
5 3e9v_A Protein BTG2; B-cell tr 76.0 1.8 6.1E-05 28.0 2.5 46 12-57 1-48 (120)
6 2z15_A Protein TOB1; human TOB 62.5 2.4 8.2E-05 27.7 0.9 47 11-57 6-52 (130)
7 1eci_A Ectatomin; pore-forming 58.6 16 0.00055 18.4 4.8 30 17-50 7-36 (37)
8 3gzx_A Biphenyl dioxygenase su 50.7 40 0.0014 25.9 6.1 45 42-91 44-89 (457)
9 1eci_B Ectatomin; pore-forming 49.0 7 0.00024 19.5 1.1 13 38-50 22-34 (34)
10 3id6_A NOP5, PRE mRNA splicing 48.5 18 0.00062 26.2 3.7 40 10-51 222-261 (268)
11 2bmo_A Oxygenase-alpha NBDO; n 47.8 45 0.0015 25.1 6.0 43 44-91 25-68 (447)
12 1qwg_A PSL synthase;, (2R)-pho 47.1 48 0.0016 23.8 5.7 49 10-61 108-168 (251)
13 3vca_A Ring-hydroxylating diox 44.7 53 0.0018 24.8 5.9 45 42-91 30-75 (412)
14 2b1x_A Naphthalene dioxygenase 43.5 56 0.0019 24.8 6.0 42 45-91 35-77 (470)
15 1wgn_A UBAP1, ubiquitin associ 42.1 40 0.0014 19.2 3.8 29 23-52 34-62 (63)
16 1uli_A Biphenyl dioxygenase la 41.6 63 0.0022 24.5 6.0 44 43-91 43-87 (460)
17 2kzv_A Uncharacterized protein 41.2 10 0.00035 23.1 1.2 34 20-53 8-49 (92)
18 1wj7_A Hypothetical protein (R 40.5 16 0.00054 23.0 2.0 35 24-62 56-91 (104)
19 2gbw_A Biphenyl 2,3-dioxygenas 38.7 75 0.0026 24.0 6.0 43 44-91 26-69 (454)
20 3n0q_A Putative aromatic-ring 38.4 77 0.0026 23.9 6.0 46 42-92 28-74 (409)
21 1xrk_A Bleomycin resistance pr 36.1 65 0.0022 18.8 4.8 23 72-94 35-57 (124)
22 3vp5_A Transcriptional regulat 34.5 82 0.0028 19.7 5.0 33 11-43 7-41 (189)
23 3icx_A PRE mRNA splicing prote 34.2 41 0.0014 24.2 3.6 39 10-50 89-127 (255)
24 3i1i_A Homoserine O-acetyltran 34.2 13 0.00045 25.5 1.0 34 37-70 129-162 (377)
25 2b61_A Homoserine O-acetyltran 34.0 19 0.00064 24.9 1.8 34 37-70 136-169 (377)
26 2jt1_A PEFI protein; solution 33.0 38 0.0013 19.6 2.8 30 13-43 1-33 (77)
27 3k6g_A Telomeric repeat-bindin 32.3 95 0.0032 19.5 4.8 44 14-58 6-63 (111)
28 3m6z_A Topoisomerase V; helix- 31.5 51 0.0018 23.8 3.7 36 13-50 286-321 (380)
29 2ozb_B U4/U6 small nuclear rib 31.5 48 0.0016 23.8 3.6 39 10-50 103-141 (260)
30 3swj_A CHUZ, putative uncharac 31.1 1.3E+02 0.0046 20.9 5.9 63 14-80 64-130 (251)
31 1ecs_A Bleomycin resistance pr 30.5 83 0.0028 18.3 4.9 21 72-92 32-52 (126)
32 2elk_A SPCC24B10.08C protein; 30.4 60 0.002 17.4 3.2 21 25-45 20-40 (58)
33 4fz4_A 0197-18KD, uncharacteri 29.3 1.1E+02 0.0037 20.4 4.8 32 21-54 85-116 (154)
34 3uh9_A Metallothiol transferas 28.5 96 0.0033 18.4 5.4 26 70-95 32-57 (145)
35 3kyz_A Sensor protein PFES; AP 26.9 1E+02 0.0034 19.8 4.2 54 7-62 9-62 (125)
36 3nnr_A Transcriptional regulat 26.8 40 0.0014 21.8 2.4 31 13-43 2-34 (228)
37 3ipw_A Hydrolase TATD family p 26.8 65 0.0022 23.6 3.7 50 13-62 147-204 (325)
38 1x41_A Transcriptional adaptor 26.1 80 0.0027 16.9 3.2 20 26-45 20-39 (60)
39 3nrg_A TETR family transcripti 25.3 1.1E+02 0.0038 19.0 4.4 32 12-43 9-42 (217)
40 1wyo_A Protein EB3, microtubul 24.8 1E+02 0.0035 20.5 4.1 44 10-54 71-128 (159)
41 3byp_A CZRB protein; membrane 24.7 48 0.0017 19.0 2.3 23 38-61 60-82 (94)
42 3vba_A Isopropylmalate/citrama 24.3 29 0.001 23.5 1.3 30 38-67 33-66 (176)
43 3sty_A Methylketone synthase 1 24.2 42 0.0014 21.5 2.1 35 36-70 62-96 (267)
44 2dst_A Hypothetical protein TT 24.2 58 0.002 19.2 2.6 32 37-69 63-94 (131)
45 1u84_A Hypothetical protein; s 23.2 56 0.0019 19.8 2.3 28 25-54 37-64 (90)
46 2yus_A SWI/SNF-related matrix- 23.0 86 0.003 18.1 3.1 21 24-45 28-48 (79)
47 3g5g_A Regulatory protein; tra 22.6 1E+02 0.0036 17.9 3.5 35 9-44 17-51 (99)
48 1wh8_A CUT-like 2, homeobox pr 22.2 99 0.0034 19.4 3.4 17 36-52 28-44 (111)
49 2hcu_A 3-isopropylmalate dehyd 22.1 39 0.0013 23.6 1.6 16 51-66 82-97 (213)
50 3pla_A NOP5, PRE mRNA splicing 22.1 84 0.0029 24.0 3.6 39 10-50 222-260 (388)
51 2csb_A Topoisomerase V, TOP61; 22.0 81 0.0028 23.6 3.4 36 13-50 286-321 (519)
52 2pl5_A Homoserine O-acetyltran 21.6 42 0.0014 22.9 1.7 34 37-70 127-160 (366)
53 2pkp_A Homoaconitase small sub 21.5 36 0.0012 22.9 1.3 30 38-67 31-64 (170)
54 3zzp_A TS9, ribosomal protein 21.5 1.3E+02 0.0044 17.3 3.8 27 6-32 49-75 (77)
55 2nnw_A NOP5/NOP56 related prot 21.4 89 0.0031 23.7 3.6 39 10-50 223-261 (376)
56 3gas_A Heme oxygenase; FMN-bin 21.1 1.6E+02 0.0056 20.7 4.8 53 14-70 64-119 (259)
57 3fla_A RIFR; alpha-beta hydrol 21.1 48 0.0016 21.3 1.9 34 36-70 68-101 (267)
58 3cwr_A Transcriptional regulat 21.1 1.4E+02 0.0048 18.3 4.1 29 15-43 16-46 (208)
59 3v7e_A Ribosome-associated pro 20.9 1.2E+02 0.0042 17.3 3.5 24 4-27 28-51 (82)
60 1jnp_A T-cell leukemia/lymphom 20.8 1.5E+02 0.0051 18.8 4.0 25 51-91 29-53 (116)
61 3cdl_A Transcriptional regulat 20.6 1.6E+02 0.0054 18.4 4.4 32 12-43 5-38 (203)
62 3ajm_A Programmed cell death p 20.5 43 0.0015 23.6 1.5 14 37-50 124-137 (213)
63 1qto_A Bleomycin-binding prote 20.4 1.3E+02 0.0044 17.3 3.7 21 72-92 35-55 (122)
64 4gfj_A Topoisomerase V; helix- 20.0 1E+02 0.0035 24.6 3.7 36 13-50 286-321 (685)
No 1
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=100.00 E-value=2e-44 Score=228.81 Aligned_cols=89 Identities=46% Similarity=0.815 Sum_probs=85.7
Q ss_pred CCCCCceEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEe
Q 034278 1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQL 80 (99)
Q Consensus 1 M~~~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~ 80 (99)
|++++++|+.+|||++||++|+++|.+|+++|+.+ +|||++||++||++|||+||||||++|||+|||++++||||++
T Consensus 1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~e--k~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~ 78 (89)
T 3rjs_A 1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIE--KDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYI 78 (89)
T ss_dssp --CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEE
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcH--HHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEE
Confidence 88999999999999999999999999999999987 9999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeecC
Q 034278 81 ETLKFLIFKGS 91 (99)
Q Consensus 81 ~~~~vLifkt~ 91 (99)
|+++||||||+
T Consensus 79 g~~~iLlfKtg 89 (89)
T 3rjs_A 79 GQVAVLLFKSG 89 (89)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEecC
Confidence 99999999986
No 2
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-42 Score=222.73 Aligned_cols=86 Identities=35% Similarity=0.764 Sum_probs=84.2
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEeCCE
Q 034278 4 GKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLETL 83 (99)
Q Consensus 4 ~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~ 83 (99)
++++|+.+||+++||++|+++|.+|+++++.+ ++||++||++||++|||+||||||++|||+|||++++||||++|++
T Consensus 12 ~k~~I~~~DM~~emq~~a~~~a~~al~~~~~e--k~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~ 89 (97)
T 4ds1_A 12 STPIVKASDITDKLKEDILTISKDALDKYQLE--RDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPL 89 (97)
T ss_dssp CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTE
T ss_pred CccEEEECCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCE
Confidence 78999999999999999999999999999977 9999999999999999999999999999999999999999999999
Q ss_pred EEEEeecC
Q 034278 84 KFLIFKGS 91 (99)
Q Consensus 84 ~vLifkt~ 91 (99)
+||||||+
T Consensus 90 aiLlfKtg 97 (97)
T 4ds1_A 90 AFLVFKTA 97 (97)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999986
No 3
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=100.00 E-value=1.3e-41 Score=220.66 Aligned_cols=87 Identities=46% Similarity=0.841 Sum_probs=83.2
Q ss_pred CCCceEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEeCC
Q 034278 3 EGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLET 82 (99)
Q Consensus 3 ~~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~ 82 (99)
.++++|+.+||+++||++|+++|.+|+++|+.+ ++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus 16 ~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~e--kdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~ 93 (102)
T 1yo3_A 16 PRGSVVKNVDMTEEMQIDAIDCANQALQKYNVE--KDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQ 93 (102)
T ss_dssp --CCCEEETTSCHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETT
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECC
Confidence 468999999999999999999999999999977 999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecC
Q 034278 83 LKFLIFKGS 91 (99)
Q Consensus 83 ~~vLifkt~ 91 (99)
++||||||+
T Consensus 94 ~aiLlfKt~ 102 (102)
T 1yo3_A 94 VAILLFKSG 102 (102)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecC
Confidence 999999985
No 4
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=83.11 E-value=1.6 Score=23.63 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccC
Q 034278 15 VKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRY 52 (99)
Q Consensus 15 ~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~y 52 (99)
+.++++|++..+.-+++.+ ++|-+.|+++|.++.
T Consensus 10 e~~KqEIL~E~RkElqK~K----~EIIeAi~~El~~~~ 43 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVK----EEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcC
Confidence 4588999999999999887 579999999998763
No 5
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=75.98 E-value=1.8 Score=28.00 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHHHhh--cCccCHHHHHHHHHHhhcccCCCceE
Q 034278 12 DMPVKMQLYAMASASQALDV--YDVFDCKSIAAHIKKEFDKRYGGGWQ 57 (99)
Q Consensus 12 dM~~~~q~~~~~~a~~a~~~--~~~~~~~~iA~~iK~~lD~~yg~~Wh 57 (99)
||-.|.+..+-=+++-+..+ .+.+..+..|+.|.+.|-++|-+.|+
T Consensus 1 ~M~~EI~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 1 DMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45566554443333333333 23222356889999999999999998
No 6
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=62.48 E-value=2.4 Score=27.71 Aligned_cols=47 Identities=15% Similarity=0.262 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceE
Q 034278 11 TDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQ 57 (99)
Q Consensus 11 ~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~Wh 57 (99)
+.|-.|.+..+-=+++-...+.+.+..+..++.|.+.|-++|-+.|.
T Consensus 6 ~~M~~EI~~av~Fl~~~L~~klp~~~v~~F~~~L~~~L~~~y~~HWy 52 (130)
T 2z15_A 6 SGMQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWY 52 (130)
T ss_dssp CCSHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred chHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555544433333332323333222456889999999999999993
No 7
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=58.57 E-value=16 Score=18.37 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcc
Q 034278 17 MQLYAMASASQALDVYDVFDCKSIAAHIKKEFDK 50 (99)
Q Consensus 17 ~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~ 50 (99)
.-+.+.-....-.+++. .+||.+||+..|+
T Consensus 7 iweticpt~~~~akkc~----g~iat~ik~~c~k 36 (37)
T 1eci_A 7 IWETVCPTVEPWAKKCS----GDIATYIKRECGK 36 (37)
T ss_dssp HHHHHHHHHHHHHHTBC----HHHHHHHHHHHHC
T ss_pred HHHHhCcchHHHHHHcc----chHHHHHHHHhcc
Confidence 33344444444444444 6899999998876
No 8
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=50.69 E-value=40 Score=25.92 Aligned_cols=45 Identities=9% Similarity=0.275 Sum_probs=32.8
Q ss_pred HHHHHhhcccCCCceEEEEeC-CcceeEEEcCCcEEEEEeCCEEEEEeecC
Q 034278 42 AHIKKEFDKRYGGGWQCVVGS-NFGCFFTHTEGTFIYFQLETLKFLIFKGS 91 (99)
Q Consensus 42 ~~iK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~vLifkt~ 91 (99)
+....++++-|+..|++|.-. ... +++.++-+.+++..++|||..
T Consensus 44 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~~~~vvv~R~~ 89 (457)
T 3gzx_A 44 DLYQLELERVFGRSWLMLGHETHIP-----KIGDYLTTYMGEDPVIMVRQK 89 (457)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCEEEeEHHHcC-----CCCCeEEEEECCEEEEEEECC
Confidence 345578888899999998654 331 245666788899999999964
No 9
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=48.99 E-value=7 Score=19.46 Aligned_cols=13 Identities=62% Similarity=0.654 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhcc
Q 034278 38 KSIAAHIKKEFDK 50 (99)
Q Consensus 38 ~~iA~~iK~~lD~ 50 (99)
.+||.+||+..|+
T Consensus 22 g~iat~ik~~c~k 34 (34)
T 1eci_B 22 GSIATMIKKKCDK 34 (34)
T ss_dssp TTHHHHHHHHSCC
T ss_pred ccHHHHHHHHhCC
Confidence 5799999998775
No 10
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=48.49 E-value=18 Score=26.20 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=32.8
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhccc
Q 034278 10 DTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKR 51 (99)
Q Consensus 10 ~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~ 51 (99)
..|++++..+.|...|..+++.+..- +.+.+||+..|.+-
T Consensus 222 G~~ise~DL~~I~~~a~~v~~L~e~R--~~L~~Yl~srM~~~ 261 (268)
T 3id6_A 222 GADISEDDLSAMRMIANTILDLYNIR--RNLNNYLEGVMKEV 261 (268)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 57899999999999999999877755 78999999998763
No 11
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=47.79 E-value=45 Score=25.12 Aligned_cols=43 Identities=7% Similarity=0.303 Sum_probs=31.0
Q ss_pred HHHhhcccCCCceEEEEeC-CcceeEEEcCCcEEEEEeCCEEEEEeecC
Q 034278 44 IKKEFDKRYGGGWQCVVGS-NFGCFFTHTEGTFIYFQLETLKFLIFKGS 91 (99)
Q Consensus 44 iK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~vLifkt~ 91 (99)
...+++.-|...|++|.-. ... +++.++-+.+++..++|||..
T Consensus 25 ~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~~ 68 (447)
T 2bmo_A 25 FQHELKTIFARNWLFLTHDSLIP-----SPGDYVKAKMGVDEVIVSRQN 68 (447)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHhhccCCeEEeEHHHCC-----CCCCeEEEEECCeeEEEEECC
Confidence 3456777788999997543 221 246677788999999999964
No 12
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=47.08 E-value=48 Score=23.83 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=36.7
Q ss_pred eCCCCHHHHHHHHHHHHHH-Hhhc---C--------ccCHHHHHHHHHHhhcccCCCceEEEEe
Q 034278 10 DTDMPVKMQLYAMASASQA-LDVY---D--------VFDCKSIAAHIKKEFDKRYGGGWQCVVG 61 (99)
Q Consensus 10 ~~dM~~~~q~~~~~~a~~a-~~~~---~--------~~~~~~iA~~iK~~lD~~yg~~WhcIVG 61 (99)
..+||.+.+..+++.+.+. ++-. . ..+..++.+.+++.||. +.|.|||=
T Consensus 108 ~i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeA---GA~~ViiE 168 (251)
T 1qwg_A 108 SSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA---GADYVIIE 168 (251)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH---TCSEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEeeeccccCCcccCCCCHHHHHHHHHHHHHC---CCcEEEEe
Confidence 4589999999999999887 3221 1 12357788999999997 77888874
No 13
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=44.74 E-value=53 Score=24.81 Aligned_cols=45 Identities=9% Similarity=0.296 Sum_probs=33.9
Q ss_pred HHHHHhhcccCCCceEEEEeC-CcceeEEEcCCcEEEEEeCCEEEEEeecC
Q 034278 42 AHIKKEFDKRYGGGWQCVVGS-NFGCFFTHTEGTFIYFQLETLKFLIFKGS 91 (99)
Q Consensus 42 ~~iK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~vLifkt~ 91 (99)
+....++++-|...|++|.-. ... ++|.++-+.+++..++|||..
T Consensus 30 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~~ 75 (412)
T 3vca_A 30 EVYALDLQHIFYKQWLYAVPVCQLA-----KAGSYTTLRVGAYEVVIVRSR 75 (412)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGGC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHHHHhccCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEcC
Confidence 445677888899999998654 331 346777788999999999964
No 14
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=43.47 E-value=56 Score=24.81 Aligned_cols=42 Identities=12% Similarity=0.402 Sum_probs=30.1
Q ss_pred HHhhcccCCCceEEEEeC-CcceeEEEcCCcEEEEEeCCEEEEEeecC
Q 034278 45 KKEFDKRYGGGWQCVVGS-NFGCFFTHTEGTFIYFQLETLKFLIFKGS 91 (99)
Q Consensus 45 K~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~vLifkt~ 91 (99)
..+++.-|...|++|.-. .+. +++.++-+.+++..++|||..
T Consensus 35 ~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~g~~vvv~R~~ 77 (470)
T 2b1x_A 35 DVERERIFGHAWVFLAHESEIP-----ERGDYVVRYISEDQFIVCRDE 77 (470)
T ss_dssp HHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHhhcCCeEeeeHHHCC-----CCCCeEEEEECCeEEEEEEcC
Confidence 456667788999997543 331 245677788999999999963
No 15
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.14 E-value=40 Score=19.24 Aligned_cols=29 Identities=7% Similarity=-0.036 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCccCHHHHHHHHHHhhcccC
Q 034278 23 ASASQALDVYDVFDCKSIAAHIKKEFDKRY 52 (99)
Q Consensus 23 ~~a~~a~~~~~~~~~~~iA~~iK~~lD~~y 52 (99)
+.|+.||++.+. +.+..|+.|-.+.|..-
T Consensus 34 ~qA~kALKat~~-NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 34 ECVLRAMKKKGE-NIEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHhCCCCCC
Confidence 478899998875 35778999999988653
No 16
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=41.56 E-value=63 Score=24.49 Aligned_cols=44 Identities=11% Similarity=0.326 Sum_probs=31.3
Q ss_pred HHHHhhcccCCCceEEEEeC-CcceeEEEcCCcEEEEEeCCEEEEEeecC
Q 034278 43 HIKKEFDKRYGGGWQCVVGS-NFGCFFTHTEGTFIYFQLETLKFLIFKGS 91 (99)
Q Consensus 43 ~iK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~vLifkt~ 91 (99)
....+++.-|...|++|.-. ... +++.++-+.+++..++|||..
T Consensus 43 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~i~~~~vvv~R~~ 87 (460)
T 1uli_A 43 LYEQELERIFGRSWLLMGHETQIP-----KAGDFMTNYMGEDPVMVVRQK 87 (460)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHhhhcCceEEEEHHHCC-----CCCCeEEEEECCeEEEEEEcC
Confidence 34567777889999997543 221 245677778899999999964
No 17
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=41.21 E-value=10 Score=23.06 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhcCccC----HHHHHHHHHHh---hccc-CC
Q 034278 20 YAMASASQALDVYDVFD----CKSIAAHIKKE---FDKR-YG 53 (99)
Q Consensus 20 ~~~~~a~~a~~~~~~~~----~~~iA~~iK~~---lD~~-yg 53 (99)
++++..++|++....++ +..|-++|++. ||.+ ||
T Consensus 8 ~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYG 49 (92)
T 2kzv_A 8 PLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWG 49 (92)
T ss_dssp SHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTC
T ss_pred HHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCccccC
Confidence 45666666666655432 57888888875 6653 54
No 18
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=40.48 E-value=16 Score=22.96 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=25.2
Q ss_pred HHHHHHhhcCccCHHHHHHHHHHhhcccC-CCceEEEEeC
Q 034278 24 SASQALDVYDVFDCKSIAAHIKKEFDKRY-GGGWQCVVGS 62 (99)
Q Consensus 24 ~a~~a~~~~~~~~~~~iA~~iK~~lD~~y-g~~WhcIVG~ 62 (99)
.|+.||..++. |++..|..-|+..- .+.|.++.+|
T Consensus 56 eAr~AL~~~ng----Dl~~AI~~Lleg~~~~~~W~~~~kK 91 (104)
T 1wj7_A 56 ECVIALHDCNG----DVNRAINVLLEGNPDTHSWEMVGKK 91 (104)
T ss_dssp HHHHHHHHHTS----CHHHHHHHHHTCSSSCSSCSSCCCC
T ss_pred HHHHHHHHcCC----CHHHHHHHHHhCCCcCCceeeeccc
Confidence 47888887774 46666777776653 4689999876
No 19
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=38.70 E-value=75 Score=23.96 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=30.6
Q ss_pred HHHhhcccCCCceEEEEeC-CcceeEEEcCCcEEEEEeCCEEEEEeecC
Q 034278 44 IKKEFDKRYGGGWQCVVGS-NFGCFFTHTEGTFIYFQLETLKFLIFKGS 91 (99)
Q Consensus 44 iK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~vLifkt~ 91 (99)
...+++.-|...|++|.-. ... +++.++-+.+++..|+|||..
T Consensus 26 ~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~~ 69 (454)
T 2gbw_A 26 YALEIERIFSRAWLMLGHESLVP-----KPGDFITTYMAEDKVILSHQS 69 (454)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHhhcCcEEEeEHHHCC-----CCCCeEEEEECCeEEEEEEcC
Confidence 3456777788999997543 331 246677788899999999964
No 20
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=38.41 E-value=77 Score=23.86 Aligned_cols=46 Identities=11% Similarity=0.425 Sum_probs=34.0
Q ss_pred HHHHHhhcccCCCceEEEEeC-CcceeEEEcCCcEEEEEeCCEEEEEeecCC
Q 034278 42 AHIKKEFDKRYGGGWQCVVGS-NFGCFFTHTEGTFIYFQLETLKFLIFKGSS 92 (99)
Q Consensus 42 ~~iK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~vLifkt~~ 92 (99)
+....++++-|...|++|.-. ... ++|.++-+.+++..++|||..+
T Consensus 28 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~~d 74 (409)
T 3n0q_A 28 EVFQTDLQEIFYKEWLFAIPACELD-----KPGSYVTHQVGNYNVIIVRGAD 74 (409)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHHHHhcCCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEcCC
Confidence 345567778899999998754 331 3467777889999999999643
No 21
>1xrk_A Bleomycin resistance protein; arm exchange, ligand binding protein, thermostable mutant, antibiotic inhibitor; HET: BLM; 1.50A {Streptoalloteichus hindustanus} SCOP: d.32.1.2 PDB: 2zhp_A* 1byl_A
Probab=36.11 E-value=65 Score=18.78 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=15.4
Q ss_pred CCcEEEEEeCCEEEEEeecCCCC
Q 034278 72 EGTFIYFQLETLKFLIFKGSSSP 94 (99)
Q Consensus 72 ~~~~i~F~~~~~~vLifkt~~~~ 94 (99)
...+.++..++..+.++..+..|
T Consensus 35 ~~~~~~~~~~~~~l~l~~~~~~~ 57 (124)
T 1xrk_A 35 EDDFAGVVRDDVTLFISAVQDQV 57 (124)
T ss_dssp CSSEEEEEETTEEEEEEECSCTT
T ss_pred CCCEEEEEECCEEEEEEcCCCCC
Confidence 34567777888888887765443
No 22
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=34.54 E-value=82 Score=19.75 Aligned_cols=33 Identities=3% Similarity=-0.030 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCcc--CHHHHHHH
Q 034278 11 TDMPVKMQLYAMASASQALDVYDVF--DCKSIAAH 43 (99)
Q Consensus 11 ~dM~~~~q~~~~~~a~~a~~~~~~~--~~~~iA~~ 43 (99)
..|+++.++.|++.|.+.+.+.+-+ ..++||+.
T Consensus 7 ~~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~ 41 (189)
T 3vp5_A 7 FSLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKA 41 (189)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHCCcccccHHHHHHH
Confidence 3578899999999999999987632 24677654
No 23
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=34.21 E-value=41 Score=24.20 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=30.4
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcc
Q 034278 10 DTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDK 50 (99)
Q Consensus 10 ~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~ 50 (99)
..|++++..+.|.+.|..+++..... +++.+||+..|..
T Consensus 89 G~~ls~~dl~~i~~~~~~v~~L~~~r--~~l~~yl~srM~~ 127 (255)
T 3icx_A 89 GADISEDDLSAMRMIANTILDLYNIR--RNLNNYLEGVMKE 127 (255)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhc
Confidence 46788888888888888888876654 6788888887753
No 24
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str}
Probab=34.17 E-value=13 Score=25.50 Aligned_cols=34 Identities=12% Similarity=0.069 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhcccCCCceEEEEeCCcceeEEE
Q 034278 37 CKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTH 70 (99)
Q Consensus 37 ~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth 70 (99)
..++|+.|...+|..-....+++||.|+|+.+..
T Consensus 129 ~~~~~~d~~~~l~~l~~~~~~ilvGhS~Gg~ia~ 162 (377)
T 3i1i_A 129 FLDVARMQCELIKDMGIARLHAVMGPSAGGMIAQ 162 (377)
T ss_dssp HHHHHHHHHHHHHHTTCCCBSEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEeeEEeeCHhHHHHH
Confidence 4678888888777654455667999999987753
No 25
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40
Probab=33.97 E-value=19 Score=24.93 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhcccCCCceEEEEeCCcceeEEE
Q 034278 37 CKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTH 70 (99)
Q Consensus 37 ~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth 70 (99)
..++|+.|...++..-....+++||.|+|+.++.
T Consensus 136 ~~~~~~~l~~~l~~l~~~~~~~lvGhS~Gg~ia~ 169 (377)
T 2b61_A 136 VQDIVKVQKALLEHLGISHLKAIIGGSFGGMQAN 169 (377)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcceeEEEEEChhHHHHH
Confidence 4678888887776654456667999999988764
No 26
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=33.04 E-value=38 Score=19.64 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHHHhhc---CccCHHHHHHH
Q 034278 13 MPVKMQLYAMASASQALDVY---DVFDCKSIAAH 43 (99)
Q Consensus 13 M~~~~q~~~~~~a~~a~~~~---~~~~~~~iA~~ 43 (99)
|++.-+++|++...+-++.. +. ..+|||+.
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~g~~p-sv~EIa~~ 33 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDDGAPV-KTRDIADA 33 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTTSCE-EHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCc-CHHHHHHH
Confidence 77888889999888887763 32 12667654
No 27
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=32.26 E-value=95 Score=19.51 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHHhhcCccCHHHHH--------------HHHHHhhcccCCCceEE
Q 034278 14 PVKMQLYAMASASQALDVYDVFDCKSIA--------------AHIKKEFDKRYGGGWQC 58 (99)
Q Consensus 14 ~~~~q~~~~~~a~~a~~~~~~~~~~~iA--------------~~iK~~lD~~yg~~Whc 58 (99)
++.--..++++.+.++.+++. |+-.+. .+|-.-.-..-+|.|||
T Consensus 6 s~~~vg~~~~~i~~lMeef~~-DL~sVTqAlLK~SGel~at~~fL~~~~r~dg~PiWsr 63 (111)
T 3k6g_A 6 SQPEVGAAIKIIRQLMEKFNL-DLSTVTQAFLKNSGELEATSAFLASGQRADGYPIWSR 63 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHTTTCHHHHHHHHHHSSCTTSCCCCCH
T ss_pred CCCcccHHHHHHHHHHHHHhh-hHHHHHHHHHHccccHHHHHHHHhCCCcCCCCcceee
Confidence 444555667788888887764 233333 33333222345789986
No 28
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=31.49 E-value=51 Score=23.80 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcc
Q 034278 13 MPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDK 50 (99)
Q Consensus 13 M~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~ 50 (99)
|-.-+.+.|+++|.+.-+.|... +|+|-.|.+.||-
T Consensus 286 mrryleqrivecalklqdrygir--edvalclarafdg 321 (380)
T 3m6z_A 286 MRRYLEQRIVECALKLQDRYGIR--EDVALCLARAFDG 321 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhhhhhccH--HHHHHHHHHHhCC
Confidence 34457789999999999999987 8999999998884
No 29
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=31.47 E-value=48 Score=23.80 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=31.2
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcc
Q 034278 10 DTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDK 50 (99)
Q Consensus 10 ~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~ 50 (99)
..+++++..+.|.+.|..+++....- +++.+||+..|..
T Consensus 103 G~~ls~~dl~~i~~~~~~v~~L~~~r--~~l~~yl~~rM~~ 141 (260)
T 2ozb_B 103 GQQLSEEELERLEEACDMALELNASK--HRIYEYVESRMSF 141 (260)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 57889999999999999888876654 6788888887753
No 30
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}
Probab=31.09 E-value=1.3e+02 Score=20.87 Aligned_cols=63 Identities=3% Similarity=-0.073 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEe---CCcceeEEEcC-CcEEEEEe
Q 034278 14 PVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVG---SNFGCFFTHTE-GTFIYFQL 80 (99)
Q Consensus 14 ~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG---~~Fgs~vth~~-~~~i~F~~ 80 (99)
.++.+..++++++.|-...+. .++++.+++.|++. ...|=..++ .-++|.+.+.. +.-+||.+
T Consensus 64 ~~~~r~~lv~m~~~a~~~~d~---~~l~~e~~~ll~~~-~~~~LAT~~~dG~P~~s~v~~~~~~g~~~~~~ 130 (251)
T 3swj_A 64 ENTIKDTIISLCMSAKSEQNF---SGVEKELNEFMLSF-NSVALATLNANGEVVCSYAPFVSTQWGNYIYI 130 (251)
T ss_dssp TTTHHHHHHHHHHHHSSSCCC---SHHHHHHHHHHHTC-SEEEEEEECTTSCEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhccccCCh---hhHHHHHHHHHhhC-CEEEEEEECCCCCEEEEEEEEEEECCEEEEEE
Confidence 466889999999988876554 47888899888864 344444553 34555444422 23455554
No 31
>1ecs_A Bleomycin resistance protein; arm-exchange, antibiotic inhibitor; HET: PG4; 1.70A {Klebsiella pneumoniae} SCOP: d.32.1.2 PDB: 1ewj_A* 1niq_B* 1mh6_A
Probab=30.47 E-value=83 Score=18.29 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=15.0
Q ss_pred CCcEEEEEeCCEEEEEeecCC
Q 034278 72 EGTFIYFQLETLKFLIFKGSS 92 (99)
Q Consensus 72 ~~~~i~F~~~~~~vLifkt~~ 92 (99)
.+.+.++..++..+.++..+.
T Consensus 32 ~~~~~~~~~~~~~l~l~~~~~ 52 (126)
T 1ecs_A 32 DAGWMILQRGDLMLEFFAHPG 52 (126)
T ss_dssp CSSEEEEEETTEEEEEEECTT
T ss_pred CCCEEEEEeCCEEEEEEeCCC
Confidence 456777888888777777654
No 32
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=30.45 E-value=60 Score=17.42 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=15.3
Q ss_pred HHHHHhhcCccCHHHHHHHHH
Q 034278 25 ASQALDVYDVFDCKSIAAHIK 45 (99)
Q Consensus 25 a~~a~~~~~~~~~~~iA~~iK 45 (99)
..+++++|...+..+||+++.
T Consensus 20 L~~~v~~~G~~~W~~IA~~~~ 40 (58)
T 2elk_A 20 LIDACETLGLGNWADIADYVG 40 (58)
T ss_dssp HHHHHHHTTTTCHHHHHHHHC
T ss_pred HHHHHHHHCcCCHHHHHHHHC
Confidence 356667787556789998874
No 33
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=29.32 E-value=1.1e+02 Score=20.40 Aligned_cols=32 Identities=9% Similarity=0.115 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCC
Q 034278 21 AMASASQALDVYDVFDCKSIAAHIKKEFDKRYGG 54 (99)
Q Consensus 21 ~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~ 54 (99)
..+.|..-.++|++. .+|-+.+|+.|.+.+++
T Consensus 85 ~tRqVa~YrkKYp~n--~eIe~eyk~~l~qt~~~ 116 (154)
T 4fz4_A 85 YIRQVAELRKKYPGD--NTIEEEYNAHLKQDEGK 116 (154)
T ss_dssp HHHHHHHHHHHSCSC--HHHHHHHHHHTCCCSSS
T ss_pred HHHHHHHHHHhCCCc--hHHHHHHHHHHhhcccc
Confidence 346667778889987 78888888887777654
No 34
>3uh9_A Metallothiol transferase FOSB 2; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol; HET: MSE; 1.60A {Bacillus anthracis}
Probab=28.49 E-value=96 Score=18.39 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=19.1
Q ss_pred EcCCcEEEEEeCCEEEEEeecCCCCC
Q 034278 70 HTEGTFIYFQLETLKFLIFKGSSSPP 95 (99)
Q Consensus 70 h~~~~~i~F~~~~~~vLifkt~~~~~ 95 (99)
.+.....+|..++..+.++..+..|+
T Consensus 32 ~~~~~~~~~~~~~~~l~l~~~~~~~~ 57 (145)
T 3uh9_A 32 VKGRKLAYFDLNGLWIALNVEEDIPR 57 (145)
T ss_dssp EECSSEEEEEETTEEEEEEECCSCCC
T ss_pred ecCCcEEEEEeCCeEEEEecCCCCCC
Confidence 34567788888988888888766544
No 35
>3kyz_A Sensor protein PFES; APC37897.4, the sensor domain of two-component sensor PFES, pseudomonas aeruginosa PA01, structural genomics, PSI-2; 1.50A {Pseudomonas aeruginosa}
Probab=26.87 E-value=1e+02 Score=19.76 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=36.5
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeC
Q 034278 7 LIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGS 62 (99)
Q Consensus 7 ~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~ 62 (99)
+-..+-++++.|+.+.+.|.+|=......+..++|+.+++- -.+ .++|=.||+.
T Consensus 9 e~~~~~l~~~~q~~L~~~A~~Ae~~~~~g~~~~L~~W~~~l-~~~-e~~w~~Vl~~ 62 (125)
T 3kyz_A 9 ERSTYFLAPADRHYLADYARQAEDAWRREGAAGAERFRKEL-SAK-EDTWVALVGP 62 (125)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HTSCEEEECT
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hhh-cCEEEEEecC
Confidence 34566789999999999999998877654435566655541 111 4689999987
No 36
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=26.79 E-value=40 Score=21.78 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcc--CHHHHHHH
Q 034278 13 MPVKMQLYAMASASQALDVYDVF--DCKSIAAH 43 (99)
Q Consensus 13 M~~~~q~~~~~~a~~a~~~~~~~--~~~~iA~~ 43 (99)
|+++.++.|++.|.+.+.+.+-+ ..++||+.
T Consensus 2 m~~~tr~~Il~aA~~lf~~~G~~~~t~~~IA~~ 34 (228)
T 3nnr_A 2 MTMKTRDKILLSSLELFNDKGERNITTNHIAAH 34 (228)
T ss_dssp --CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhChhhcCHHHHHHH
Confidence 77888999999999999987632 24666654
No 37
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=26.76 E-value=65 Score=23.57 Aligned_cols=50 Identities=14% Similarity=-0.000 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHHHhh-cCc-------cCHHHHHHHHHHhhcccCCCceEEEEeC
Q 034278 13 MPVKMQLYAMASASQALDV-YDV-------FDCKSIAAHIKKEFDKRYGGGWQCVVGS 62 (99)
Q Consensus 13 M~~~~q~~~~~~a~~a~~~-~~~-------~~~~~iA~~iK~~lD~~yg~~WhcIVG~ 62 (99)
-+.+.|+++.+...++.++ ++. +..+++.+-||+.-...-++..||.-|.
T Consensus 147 ~~~~~Q~~~F~~ql~lA~e~~~lPviiH~r~A~~d~l~iL~~~~~~~~~gViH~FsGs 204 (325)
T 3ipw_A 147 SDKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQLNKELGYNGCKGVVHCFDGT 204 (325)
T ss_dssp SCHHHHHHHHHHTHHHHHHCTTCCEEEEEESCHHHHHHHHHHTTCTTSCEEECSCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCeEEEEeCchHHHHHHHHHhcCCCCCcEEEEECCCC
Confidence 3668999999988888888 642 2247888889887655456677776665
No 38
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=26.07 E-value=80 Score=16.94 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=14.3
Q ss_pred HHHHhhcCccCHHHHHHHHH
Q 034278 26 SQALDVYDVFDCKSIAAHIK 45 (99)
Q Consensus 26 ~~a~~~~~~~~~~~iA~~iK 45 (99)
.+|+++|...+..+||++|.
T Consensus 20 ~~~v~~~G~~~W~~Ia~~~~ 39 (60)
T 1x41_A 20 LEAVMDCGFGNWQDVANQMC 39 (60)
T ss_dssp HHHHHHTCTTCHHHHHHHHT
T ss_pred HHHHHHHCcCcHHHHHHHhC
Confidence 45667787556789998874
No 39
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=25.27 E-value=1.1e+02 Score=19.04 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcc--CHHHHHHH
Q 034278 12 DMPVKMQLYAMASASQALDVYDVF--DCKSIAAH 43 (99)
Q Consensus 12 dM~~~~q~~~~~~a~~a~~~~~~~--~~~~iA~~ 43 (99)
.++++.++.|++.|.+.+.+.+-+ ..++||+.
T Consensus 9 ~~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~ 42 (217)
T 3nrg_A 9 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITER 42 (217)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 467889999999999999987632 24667664
No 40
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.78 E-value=1e+02 Score=20.48 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=33.0
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhcCcc--------------CHHHHHHHHHHhhcccCCC
Q 034278 10 DTDMPVKMQLYAMASASQALDVYDVF--------------DCKSIAAHIKKEFDKRYGG 54 (99)
Q Consensus 10 ~~dM~~~~q~~~~~~a~~a~~~~~~~--------------~~~~iA~~iK~~lD~~yg~ 54 (99)
.+.++-++.+.+ +..++|+++++.+ |--|+++.+|+.+|+.|++
T Consensus 71 ~a~~e~e~~~N~-k~lQ~af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~~ 128 (159)
T 1wyo_A 71 QAKLEHEYIHNF-KVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG 128 (159)
T ss_dssp TCCSSHHHHHHH-HHHHHHHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCChHHHHHHH-HHHHHHHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCCC
Confidence 566777777666 6777788888532 2247899999999999975
No 41
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=24.68 E-value=48 Score=19.01 Aligned_cols=23 Identities=9% Similarity=0.345 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhcccCCCceEEEEe
Q 034278 38 KSIAAHIKKEFDKRYGGGWQCVVG 61 (99)
Q Consensus 38 ~~iA~~iK~~lD~~yg~~WhcIVG 61 (99)
.+++..|++.|-++||.. ||.|-
T Consensus 60 h~i~~~ie~~l~~~~~~~-~vtIh 82 (94)
T 3byp_A 60 HRLCDELERALAQAFPGL-QATIH 82 (94)
T ss_dssp HHHHHHHHHHHHHHSTTE-EEEEE
T ss_pred HHHHHHHHHHHHHHCCCC-EEEEE
Confidence 468889999998899877 88774
No 42
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=24.32 E-value=29 Score=23.54 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhcc----cCCCceEEEEeCCccee
Q 034278 38 KSIAAHIKKEFDK----RYGGGWQCVVGSNFGCF 67 (99)
Q Consensus 38 ~~iA~~iK~~lD~----~yg~~WhcIVG~~Fgs~ 67 (99)
..+|+++-+.+|. ++-+.+-+|.|++||+=
T Consensus 33 ~~l~~~~f~~~~p~F~~~~~~g~IlVaG~NFG~G 66 (176)
T 3vba_A 33 EELAQFVMTGADPDFPKKVKPGDIIVGGKNFGCG 66 (176)
T ss_dssp HHHGGGTTTTTCTTHHHHCCTTCEEEECTTBTBS
T ss_pred HHHHHhhCcCCCccHHHhcCCCCEEEeCCCccCC
Confidence 4455554444433 34556778888899963
No 43
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Probab=24.21 E-value=42 Score=21.54 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEE
Q 034278 36 DCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTH 70 (99)
Q Consensus 36 ~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth 70 (99)
...+.|+.|.+.++..-+..=-++||.|+|+.+..
T Consensus 62 ~~~~~~~~~~~~l~~l~~~~~~~lvGhS~Gg~ia~ 96 (267)
T 3sty_A 62 NFSDYLSPLMEFMASLPANEKIILVGHALGGLAIS 96 (267)
T ss_dssp SHHHHHHHHHHHHHTSCTTSCEEEEEETTHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEEcHHHHHHH
Confidence 35788899999998863234457899999987654
No 44
>2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39
Probab=24.19 E-value=58 Score=19.19 Aligned_cols=32 Identities=13% Similarity=-0.060 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhcccCCCceEEEEeCCcceeEE
Q 034278 37 CKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFT 69 (99)
Q Consensus 37 ~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vt 69 (99)
..+.++.+.+.+|..-.... ++||.|+|+.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~-~lvG~S~Gg~~a 94 (131)
T 2dst_A 63 PEELAHFVAGFAVMMNLGAP-WVLLRGLGLALG 94 (131)
T ss_dssp HHHHHHHHHHHHHHTTCCSC-EEEECGGGGGGH
T ss_pred HHHHHHHHHHHHHHcCCCcc-EEEEEChHHHHH
Confidence 35667777766665432333 478999998765
No 45
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=23.23 E-value=56 Score=19.83 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=18.6
Q ss_pred HHHHHhhcCccCHHHHHHHHHHhhcccCCC
Q 034278 25 ASQALDVYDVFDCKSIAAHIKKEFDKRYGG 54 (99)
Q Consensus 25 a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~ 54 (99)
+..|+...+ +...+|+.|+.-|...|+.
T Consensus 37 Iv~av~~~d--~~~~LA~~Iq~If~~SFee 64 (90)
T 1u84_A 37 VLQAVYETE--DARTLAARIQSIYEFAFDE 64 (90)
T ss_dssp HHHHHTTCS--CHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHHhc
Confidence 334444344 4588999999888877754
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=23.05 E-value=86 Score=18.11 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=15.0
Q ss_pred HHHHHHhhcCccCHHHHHHHHH
Q 034278 24 SASQALDVYDVFDCKSIAAHIK 45 (99)
Q Consensus 24 ~a~~a~~~~~~~~~~~iA~~iK 45 (99)
...+|+++|. .+..+||++|.
T Consensus 28 ~Ll~~v~~~G-~~W~~IA~~v~ 48 (79)
T 2yus_A 28 LLLEALEMYK-DDWNKVSEHVG 48 (79)
T ss_dssp HHHHHHHHSS-SCHHHHHHHHS
T ss_pred HHHHHHHHhC-CCHHHHHHHcC
Confidence 3455778888 46789998773
No 47
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=22.64 E-value=1e+02 Score=17.92 Aligned_cols=35 Identities=6% Similarity=-0.143 Sum_probs=20.6
Q ss_pred EeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHH
Q 034278 9 EDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHI 44 (99)
Q Consensus 9 ~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~i 44 (99)
....|+++++..+-+..+.+.+..+-. .+++|+.+
T Consensus 17 ~~~~M~~~~~~~ig~~lr~~R~~~glt-q~elA~~~ 51 (99)
T 3g5g_A 17 RGSHMESFLLSKVSFVIKKIRLEKGMT-QEDLAYKS 51 (99)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTTCC-HHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCCC-HHHHHHHH
Confidence 356788888888877777777665521 26777654
No 48
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=22.15 E-value=99 Score=19.39 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHhhcccC
Q 034278 36 DCKSIAAHIKKEFDKRY 52 (99)
Q Consensus 36 ~~~~iA~~iK~~lD~~y 52 (99)
|-++||..||++|-...
T Consensus 28 DTk~I~~~ikewL~~~~ 44 (111)
T 1wh8_A 28 DTYSITKRVKEVLTDNN 44 (111)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 44899999999997653
No 49
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=22.11 E-value=39 Score=23.63 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=12.9
Q ss_pred cCCCceEEEEeCCcce
Q 034278 51 RYGGGWQCVVGSNFGC 66 (99)
Q Consensus 51 ~yg~~WhcIVG~~Fgs 66 (99)
+|.+..-+|+|++|||
T Consensus 82 ~~~~~~IlvaG~NfGc 97 (213)
T 2hcu_A 82 EYREASILITGDNFGA 97 (213)
T ss_dssp GGTTCCEEEECSSBTC
T ss_pred hhcCCcEEEecCCCCC
Confidence 4667788888999996
No 50
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=22.10 E-value=84 Score=23.96 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=29.4
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcc
Q 034278 10 DTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDK 50 (99)
Q Consensus 10 ~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~ 50 (99)
..+++++..+.|.+.|..+++..... +++.+||+..|..
T Consensus 222 G~~ls~~dl~~I~~~~~~v~~L~e~R--~~L~~Yl~srM~~ 260 (388)
T 3pla_A 222 GADISEDDLSAMRMIANTILDLYNIR--RNLNNYLEGVMKE 260 (388)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 46788888888888888888766654 6788888877753
No 51
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=22.01 E-value=81 Score=23.60 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcc
Q 034278 13 MPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDK 50 (99)
Q Consensus 13 M~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~ 50 (99)
|-.-+.+.|+++|.+.-+.|... .|+|-.|...||-
T Consensus 286 mrryleqrivecalklqdrygir--edvalclarafdg 321 (519)
T 2csb_A 286 MRRYLEQRIVECALKLQDRYGIR--EDVALCLARAFDG 321 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhhhhhccH--HHHHHHHHHHhCC
Confidence 34457788999999999999987 8999999998884
No 52
>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40
Probab=21.59 E-value=42 Score=22.91 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcccCCCceEEEEeCCcceeEEE
Q 034278 37 CKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTH 70 (99)
Q Consensus 37 ~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth 70 (99)
..++|+.|...++.--.....++||.|+|+.++.
T Consensus 127 ~~~~~~dl~~~l~~l~~~~~~~lvGhS~Gg~ia~ 160 (366)
T 2pl5_A 127 IQDMVKAQKLLVESLGIEKLFCVAGGSMGGMQAL 160 (366)
T ss_dssp HHHHHHHHHHHHHHTTCSSEEEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCceEEEEEEeCccHHHHH
Confidence 4677777777776543344446899999988754
No 53
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=21.52 E-value=36 Score=22.86 Aligned_cols=30 Identities=33% Similarity=0.513 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhcc----cCCCceEEEEeCCccee
Q 034278 38 KSIAAHIKKEFDK----RYGGGWQCVVGSNFGCF 67 (99)
Q Consensus 38 ~~iA~~iK~~lD~----~yg~~WhcIVG~~Fgs~ 67 (99)
..+|+++-+.+|. ++.+.|-+|.|++||+=
T Consensus 31 ~~l~~~~f~~~~p~f~~~~~~~~iivaG~nfG~G 64 (170)
T 2pkp_A 31 YELASHCMAGIDENFPKKVKEGDVIVAGENFGCG 64 (170)
T ss_dssp HHHHTTTTTTTCTTHHHHCCTTCEEEECTTBTBS
T ss_pred HHHHHHhcccCCCchHHhCCCCCEEEecCCCCCC
Confidence 3455444333332 34567888888999963
No 54
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=21.48 E-value=1.3e+02 Score=17.34 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=22.3
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHHHhhc
Q 034278 6 ALIEDTDMPVKMQLYAMASASQALDVY 32 (99)
Q Consensus 6 ~~V~~~dM~~~~q~~~~~~a~~a~~~~ 32 (99)
..|+..|++++..+.+++.....+.+.
T Consensus 49 m~Il~P~l~ee~~~~~vek~~~~i~~~ 75 (77)
T 3zzp_A 49 NIVLNPNLDQSQLQNEKEIIQRALENY 75 (77)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 457789999999999999888887754
No 55
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=21.37 E-value=89 Score=23.66 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=29.4
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcc
Q 034278 10 DTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDK 50 (99)
Q Consensus 10 ~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~ 50 (99)
..+++++..+.|.+.|..+++....- +++.+||+..|..
T Consensus 223 G~~ls~~dl~~i~~~~~~v~~L~~~R--~~l~~yl~~rM~~ 261 (376)
T 2nnw_A 223 GAWMDQTDIEVVRQLAEEIDRLYQLR--KKLEDYIDRAMDD 261 (376)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 46788888888888888888766644 6788888877753
No 56
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=21.13 E-value=1.6e+02 Score=20.68 Aligned_cols=53 Identities=8% Similarity=0.073 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEe---CCcceeEEE
Q 034278 14 PVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVG---SNFGCFFTH 70 (99)
Q Consensus 14 ~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG---~~Fgs~vth 70 (99)
.++.+..++++++.|-.+-+. .++.+.|++.+++ ....|=-.++ .-++|.+.+
T Consensus 64 ~~~~r~~lV~m~~~A~~~l~l---~~l~~ei~~ll~~-~~~~~LAT~~~~G~P~~S~v~f 119 (259)
T 3gas_A 64 PKDYKNATIELCQSVEKTHDL---KGVEEEVKAFKEG-FDSVCLATLHPNGHVVCSYAPL 119 (259)
T ss_dssp GGGHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHT-CSEEEEEEECTTSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCh---hhHHHHHHHHHHh-CCEEEEEeeCcCCCEEEEEEEE
Confidence 457899999999999886553 5899999999885 4566666664 346665554
No 57
>3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A*
Probab=21.13 E-value=48 Score=21.32 Aligned_cols=34 Identities=9% Similarity=0.164 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEE
Q 034278 36 DCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTH 70 (99)
Q Consensus 36 ~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth 70 (99)
+..+.|+.+...++.. +..=-++||.|+|+.+..
T Consensus 68 ~~~~~~~~~~~~l~~~-~~~~~~lvG~S~Gg~ia~ 101 (267)
T 3fla_A 68 SIGGLTNRLLEVLRPF-GDRPLALFGHSMGAIIGY 101 (267)
T ss_dssp SHHHHHHHHHHHTGGG-TTSCEEEEEETHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc-CCCceEEEEeChhHHHHH
Confidence 3578888998888876 333347889999988754
No 58
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=21.08 E-value=1.4e+02 Score=18.31 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhcCcc--CHHHHHHH
Q 034278 15 VKMQLYAMASASQALDVYDVF--DCKSIAAH 43 (99)
Q Consensus 15 ~~~q~~~~~~a~~a~~~~~~~--~~~~iA~~ 43 (99)
++.++.|++.|.+.+.+.+-+ ..++||+.
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~ 46 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASE 46 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHH
Confidence 788999999999999887532 24677764
No 59
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=20.86 E-value=1.2e+02 Score=17.28 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=19.0
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHH
Q 034278 4 GKALIEDTDMPVKMQLYAMASASQ 27 (99)
Q Consensus 4 ~~~~V~~~dM~~~~q~~~~~~a~~ 27 (99)
.+.+|+..|.+++....+...|.+
T Consensus 28 aklViiA~D~~~~~~~~i~~lc~~ 51 (82)
T 3v7e_A 28 VKEVVVAKDADPILTSSVVSLAED 51 (82)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHH
T ss_pred eeEEEEeCCCCHHHHHHHHHHHHH
Confidence 356789999999888887777655
No 60
>1jnp_A T-cell leukemia/lymphoma protein 1A; beta barrel, dimer, immune system; 2.50A {Mus musculus} SCOP: b.63.1.1
Probab=20.83 E-value=1.5e+02 Score=18.85 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=19.2
Q ss_pred cCCCceEEEEeCCcceeEEEcCCcEEEEEeCCEEEEEeecC
Q 034278 51 RYGGGWQCVVGSNFGCFFTHTEGTFIYFQLETLKFLIFKGS 91 (99)
Q Consensus 51 ~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~vLifkt~ 91 (99)
.+|++|-.|+.+.-++ +.|++|+-.
T Consensus 29 E~~RtWv~v~ve~~~~----------------ltV~l~Q~~ 53 (116)
T 1jnp_A 29 EFRRSWLPVVIKSNEK----------------FQVILRQED 53 (116)
T ss_dssp TTCCEEEEEEEECSSS----------------CEEEEEECC
T ss_pred CCCceEEEEEEEecCc----------------eEEEEEEcc
Confidence 4599999999886333 788888874
No 61
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=20.57 E-value=1.6e+02 Score=18.42 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcc--CHHHHHHH
Q 034278 12 DMPVKMQLYAMASASQALDVYDVF--DCKSIAAH 43 (99)
Q Consensus 12 dM~~~~q~~~~~~a~~a~~~~~~~--~~~~iA~~ 43 (99)
.++++.++.|++.|.+.+.+.+-+ ..++||+.
T Consensus 5 ~~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~ 38 (203)
T 3cdl_A 5 RLTDQKRESIVQAAIAEFGDRGFEITSMDRIAAR 38 (203)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHcCchhcCHHHHHHH
Confidence 466788999999999999886522 24566653
No 62
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=20.47 E-value=43 Score=23.60 Aligned_cols=14 Identities=43% Similarity=0.517 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhcc
Q 034278 37 CKSIAAHIKKEFDK 50 (99)
Q Consensus 37 ~~~iA~~iK~~lD~ 50 (99)
.++||..||+-||.
T Consensus 124 IKeIAsaIKklLDA 137 (213)
T 3ajm_A 124 IKDIASAIKELLDT 137 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 48999999999995
No 63
>1qto_A Bleomycin-binding protein; arm-exchange, antibiotic inhibitor; 1.50A {Streptomyces verticillus} SCOP: d.32.1.2 PDB: 1jie_A* 1jif_A
Probab=20.42 E-value=1.3e+02 Score=17.33 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=13.7
Q ss_pred CCcEEEEEeCCEEEEEeecCC
Q 034278 72 EGTFIYFQLETLKFLIFKGSS 92 (99)
Q Consensus 72 ~~~~i~F~~~~~~vLifkt~~ 92 (99)
...+.++..++..+.++..+.
T Consensus 35 ~~~~~~~~~~~~~l~l~~~~~ 55 (122)
T 1qto_A 35 DRDFAGVRRGDIRLHISRTEH 55 (122)
T ss_dssp CSSEEEEEETTEEEEEEECSC
T ss_pred CCCEEEEEECCEEEEEEcCCC
Confidence 345667777777777776543
No 64
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=20.04 E-value=1e+02 Score=24.57 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcc
Q 034278 13 MPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDK 50 (99)
Q Consensus 13 M~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~ 50 (99)
|-.-+.+.|+++|.+.-+.|... .|+|-.|-..||-
T Consensus 286 mrryleqrivecalklqdrygir--edvalclarafDG 321 (685)
T 4gfj_A 286 MRRYLEQRIVECALKLQDRYGIR--EDVALCLARAFDG 321 (685)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC--HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhhhhhccH--HHHHHHHHHHhcc
Confidence 44557789999999999999987 8999999999884
Done!