BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034282
         (99 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
           Candida Albicans
          Length = 485

 Score = 25.8 bits (55), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 4   KEMAGHCEALLIGKQKKMSHLMSAQLRQ-ESLINFSITNHENEVDNPLTDERITPNSNKP 62
           KE   + +  +I K+ +    + +++ Q  ++++ S+ + ++E +N L       N  KP
Sbjct: 80  KEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQDEENNELVRTWTPENYKKP 139

Query: 63  PVGTVTTQCASEYQHHPQYFRLPASSP 89
                 T   ++  HH    RL    P
Sbjct: 140 EQIAAATGAPAKLSHHEVLLRLDGYDP 166


>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase
 pdb|3QO7|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
           Candida Albicans
 pdb|3QO8|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Candida
           Albicans
          Length = 485

 Score = 25.8 bits (55), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 4   KEMAGHCEALLIGKQKKMSHLMSAQLRQ-ESLINFSITNHENEVDNPLTDERITPNSNKP 62
           KE   + +  +I K+ +    + +++ Q  ++++ S+ + ++E +N L       N  KP
Sbjct: 80  KEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQDEENNELVRTWTPENYKKP 139

Query: 63  PVGTVTTQCASEYQHHPQYFRLPASSP 89
                 T   ++  HH    RL    P
Sbjct: 140 EQIAAATGAPAKLSHHEVLLRLDGYDP 166


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,944,518
Number of Sequences: 62578
Number of extensions: 94763
Number of successful extensions: 170
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 6
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)