Query 034282
Match_columns 99
No_of_seqs 51 out of 53
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 11:46:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1877 Putative transmembrane 98.3 4E-07 8.8E-12 81.1 2.5 79 1-96 735-819 (819)
2 COG1858 MauG Cytochrome c pero 54.1 5.6 0.00012 33.3 0.7 14 83-96 198-211 (364)
3 PF03150 CCP_MauG: Di-haem cyt 45.8 8.7 0.00019 28.0 0.6 13 84-96 142-154 (159)
4 PF08020 DUF1706: Protein of u 39.8 10 0.00022 28.1 0.1 15 81-95 144-158 (166)
5 PTZ00242 protein tyrosine phos 26.3 28 0.00061 25.2 0.6 10 90-99 154-163 (166)
6 PF04968 CHORD: CHORD ; Inter 23.9 31 0.00067 22.2 0.3 13 87-99 46-58 (64)
7 TIGR03791 TTQ_mauG tryptophan 20.9 47 0.001 26.6 0.9 11 85-95 139-149 (291)
8 PF14987 NADHdh_A3: NADH dehyd 20.4 48 0.001 22.6 0.7 13 81-93 29-41 (84)
9 COG1722 XseB Exonuclease VII s 17.8 1.4E+02 0.0029 19.9 2.5 26 5-30 45-70 (81)
10 PRK14064 exodeoxyribonuclease 16.1 1.6E+02 0.0035 19.1 2.5 24 5-28 41-64 (75)
No 1
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=98.27 E-value=4e-07 Score=81.11 Aligned_cols=79 Identities=35% Similarity=0.329 Sum_probs=58.0
Q ss_pred CChHHHHHHHHHhhhhhhhhhhHHhhhhhhhhhhccccC-CCCc-----CCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 034282 1 MPYKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSI-TNHE-----NEVDNPLTDERITPNSNKPPVGTVTTQCASE 74 (99)
Q Consensus 1 vpY~eMasqCEAL~~GKQQKMS~lmSf~~~~~~~~~~~~-~~~e-----~~~~Np~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (99)
|+|++|+.| |++++|||||+| ++ ..+..++. ..++ .+.+|+..|.++.........+.++..|.++
T Consensus 735 vs~~~~~~~-e~~~~~~~q~~~--~~-----~~s~~~s~~~~~~~~~r~~s~~~~~~d~~Ls~~l~~t~~~~~~~~~~~~ 806 (819)
T KOG1877|consen 735 VSIDQMDAH-EATLSGKQQKRS--RS-----LTSSTFSPSPFDEFLARTTSGENLNEDFRLSRELAPTLVRRGQITRSTE 806 (819)
T ss_pred CCHHHHhhH-HHHhhhhhhhcc--cc-----ccccccCcCchHHHHhhccCCCCchhhhhHHHHHhhccCCCCCCccccc
Confidence 689999999 999999999999 11 11111111 1111 3378888887777777756677888899988
Q ss_pred cccCCCcccCCCCCcchhhhhc
Q 034282 75 YQHHPQYFRLPASSPYDNFLKA 96 (99)
Q Consensus 75 ~q~~~~~frLP~sSPYDnFLKA 96 (99)
++ +|+|||||++|
T Consensus 807 ~~---------~s~~~~~~~~~ 819 (819)
T KOG1877|consen 807 LQ---------ASSPKDNFETA 819 (819)
T ss_pred cc---------cCCCcchhhcC
Confidence 87 99999999986
No 2
>COG1858 MauG Cytochrome c peroxidase [Inorganic ion transport and metabolism]
Probab=54.07 E-value=5.6 Score=33.28 Aligned_cols=14 Identities=29% Similarity=0.645 Sum_probs=12.0
Q ss_pred cCCCCCcchhhhhc
Q 034282 83 RLPASSPYDNFLKA 96 (99)
Q Consensus 83 rLP~sSPYDnFLKA 96 (99)
=-|++||||.||+-
T Consensus 198 l~t~~S~fD~fL~g 211 (364)
T COG1858 198 LITPDSRFDRFLRG 211 (364)
T ss_pred hCCCCChHHHHhcC
Confidence 46899999999985
No 3
>PF03150 CCP_MauG: Di-haem cytochrome c peroxidase; InterPro: IPR004852 This is a group of distinct cytochrome c peroxidases (CCPs) that contain two haem groups. Similar to other cytochrome c peroxidases, they reduce hydrogen peroxide to water using c-type haem as an oxidizable substrate. However, since they possess two, instead of one, haem prosthetic groups, bacterial CCPs reduce hydrogen peroxide without the need to generate semi-stable free radicals. The two haem groups have significantly different redox potentials. The high potential (+320 mV) haem feeds electrons from electron shuttle proteins to the low potential (-330 mV) haem, where peroxide is reduced (indeed, the low potential site is known as the peroxidatic site) []. The CCP protein itself is structured into two domains, each containing one c-type haem group, with a calcium-binding site at the domain interface. This family also includes MauG proteins, whose similarity to di-haem CCP was previously recognised [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IQC_A 2VHD_B 1EB7_A 3RN0_A 3SVW_B 3RMZ_A 3SJL_B 3PXW_A 3SLE_B 3PXS_A ....
Probab=45.83 E-value=8.7 Score=27.97 Aligned_cols=13 Identities=38% Similarity=0.884 Sum_probs=10.5
Q ss_pred CCCCCcchhhhhc
Q 034282 84 LPASSPYDNFLKA 96 (99)
Q Consensus 84 LP~sSPYDnFLKA 96 (99)
.+..||||.||+-
T Consensus 142 ~~~~S~fD~~l~G 154 (159)
T PF03150_consen 142 VSFDSPFDRFLRG 154 (159)
T ss_dssp S-TTSHHHHHHTT
T ss_pred CCCCChHHHHHcc
Confidence 7889999999963
No 4
>PF08020 DUF1706: Protein of unknown function (DUF1706) ; InterPro: IPR012550 This family contains many hypothetical proteins from bacteria and yeast.
Probab=39.79 E-value=10 Score=28.12 Aligned_cols=15 Identities=40% Similarity=0.419 Sum_probs=11.8
Q ss_pred cccCCCCCcchhhhh
Q 034282 81 YFRLPASSPYDNFLK 95 (99)
Q Consensus 81 ~frLP~sSPYDnFLK 95 (99)
.+..=-|||||+|.|
T Consensus 144 ~i~~nTsS~y~~a~~ 158 (166)
T PF08020_consen 144 YIQSNTSSHYDWARK 158 (166)
T ss_pred eeeecchhHHHHHHH
Confidence 455567999999986
No 5
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=26.27 E-value=28 Score=25.22 Aligned_cols=10 Identities=60% Similarity=0.939 Sum_probs=7.4
Q ss_pred chhhhhccCC
Q 034282 90 YDNFLKAAGC 99 (99)
Q Consensus 90 YDnFLKAAGC 99 (99)
|.+.+|||||
T Consensus 154 ~~~~~~~~~~ 163 (166)
T PTZ00242 154 YKPRKKAAGC 163 (166)
T ss_pred HHHHhccCCC
Confidence 5667778877
No 6
>PF04968 CHORD: CHORD ; InterPro: IPR007051 Cysteine- and histidine-rich domains (CHORDs) are 60-amino acid modules that bind two zinc ions. They are usually arranged in tandem and are found in all tested eukaryotes, with the exception of yeast, where they are involved in processes ranging from pressure sensing in the heart to maintenance of diploidy in fungi, and exhibit distinct protein-protein interaction specificity. Six cysteine and two histidine residues are invariant within the CHORD domain. Three other residues are also invariant and some positions are confined to positive, negative, or aromatic amino acids [, ]. Silencing of the Caenorhabditis elegansCHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development. The CHORD domain is sometimes found N-terminal to the CS domain, IPR007052 from INTERPRO, in metazoan proteins, but occurs separately from the CS domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains []. ; PDB: 2XCM_E 2YRT_A.
Probab=23.88 E-value=31 Score=22.17 Aligned_cols=13 Identities=54% Similarity=1.101 Sum_probs=8.4
Q ss_pred CCcchhhhhccCC
Q 034282 87 SSPYDNFLKAAGC 99 (99)
Q Consensus 87 sSPYDnFLKAAGC 99 (99)
.+=||-||+..||
T Consensus 46 ~~dF~~Fl~i~GC 58 (64)
T PF04968_consen 46 VSDFDEFLKIPGC 58 (64)
T ss_dssp ESSHHHHTT---S
T ss_pred eeCHHHHhcCCCC
Confidence 5678999999998
No 7
>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG. Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.
Probab=20.92 E-value=47 Score=26.58 Aligned_cols=11 Identities=18% Similarity=0.712 Sum_probs=9.4
Q ss_pred CCCCcchhhhh
Q 034282 85 PASSPYDNFLK 95 (99)
Q Consensus 85 P~sSPYDnFLK 95 (99)
.+.||||.||+
T Consensus 139 s~~S~fD~~l~ 149 (291)
T TIGR03791 139 SGEAPFDRWAE 149 (291)
T ss_pred CCCCchHHHhc
Confidence 46799999997
No 8
>PF14987 NADHdh_A3: NADH dehydrogenase 1 alpha subcomplex subunit 3
Probab=20.38 E-value=48 Score=22.64 Aligned_cols=13 Identities=38% Similarity=0.738 Sum_probs=11.1
Q ss_pred cccCCCCCcchhh
Q 034282 81 YFRLPASSPYDNF 93 (99)
Q Consensus 81 ~frLP~sSPYDnF 93 (99)
..-||+-|||-||
T Consensus 29 avilP~lSPytkY 41 (84)
T PF14987_consen 29 AVILPPLSPYTKY 41 (84)
T ss_pred hhhcCCccchHhh
Confidence 3679999999987
No 9
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=17.82 E-value=1.4e+02 Score=19.86 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhhhhhhhhHHhhhhhh
Q 034282 5 EMAGHCEALLIGKQKKMSHLMSAQLR 30 (99)
Q Consensus 5 eMasqCEAL~~GKQQKMS~lmSf~~~ 30 (99)
+.+-+|+..+-+-+|||..+++-...
T Consensus 45 ~L~k~c~~~L~~Ae~~v~~l~~~~~~ 70 (81)
T COG1722 45 ALYKECQEKLQQAEQRVEKLLEEDEE 70 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46789999999999999999876554
No 10
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=16.11 E-value=1.6e+02 Score=19.14 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhhhhhhhhHHhhhh
Q 034282 5 EMAGHCEALLIGKQKKMSHLMSAQ 28 (99)
Q Consensus 5 eMasqCEAL~~GKQQKMS~lmSf~ 28 (99)
++...|.+.+-.-+|||.+++.-.
T Consensus 41 ~L~k~c~~~L~~ae~kv~~l~~~~ 64 (75)
T PRK14064 41 ELTKLCQDKLQSAEKRMAKVVTDA 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467899999999999999988543
Done!