Query 034282
Match_columns 99
No_of_seqs 51 out of 53
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 20:16:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034282.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034282hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s1ma1 c.23.16.1 (A:287-544) 28.1 5.9 0.00043 28.6 0.0 23 75-97 226-250 (258)
2 d1vcoa1 c.23.16.1 (A:298-547) 19.5 9.9 0.00072 27.2 -0.2 23 75-97 222-246 (250)
3 d1m1eb_ a.161.1.1 (B:) beta-ca 15.1 27 0.002 20.6 1.1 13 17-29 8-20 (70)
4 d1p9ka_ d.66.1.6 (A:) Hypothet 14.6 19 0.0014 20.9 0.2 9 90-98 23-31 (79)
5 d1vp7a_ a.7.13.1 (A:) Exonucle 12.9 70 0.0051 18.0 2.5 22 5-26 41-62 (68)
6 d1ofux_ c.37.1.22 (X:) Hypothe 12.8 34 0.0025 21.2 1.1 18 81-98 37-54 (119)
7 d1q60a_ d.288.1.1 (A:) General 12.6 38 0.0028 21.0 1.3 16 84-99 28-43 (99)
8 d1dpjb_ a.137.7.1 (B:) Protein 10.7 55 0.004 15.9 1.3 17 17-33 2-19 (29)
9 d2doda1 a.159.2.1 (A:651-719) 9.4 51 0.0037 18.4 1.0 15 82-96 23-37 (69)
10 d1d1ga_ c.71.1.1 (A:) Dihydrof 8.7 29 0.0021 21.4 -0.3 21 3-27 31-51 (164)
No 1
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=28.10 E-value=5.9 Score=28.61 Aligned_cols=23 Identities=35% Similarity=0.678 Sum_probs=18.3
Q ss_pred cccCCCcccCC--CCCcchhhhhcc
Q 034282 75 YQHHPQYFRLP--ASSPYDNFLKAA 97 (99)
Q Consensus 75 ~q~~~~~frLP--~sSPYDnFLKAA 97 (99)
-|+||.|.-.| |+-+|..|++||
T Consensus 226 ~QfHPEf~Srp~~p~PLF~~Fi~Aa 250 (258)
T d1s1ma1 226 CQFHPEFTSTPRDGHPLFAGFVKAA 250 (258)
T ss_dssp ESSCGGGTCCTTTCCHHHHHHHHHH
T ss_pred ecCCccccCCCCCCChHHHHHHHHH
Confidence 56777777666 667899999996
No 2
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=19.52 E-value=9.9 Score=27.18 Aligned_cols=23 Identities=39% Similarity=0.764 Sum_probs=17.7
Q ss_pred cccCCCcccCC--CCCcchhhhhcc
Q 034282 75 YQHHPQYFRLP--ASSPYDNFLKAA 97 (99)
Q Consensus 75 ~q~~~~~frLP--~sSPYDnFLKAA 97 (99)
-|+||.|--.| |+=+|..|++||
T Consensus 222 vQfHPEf~Srp~~phPLF~~fi~Aa 246 (250)
T d1vcoa1 222 LQSHPEFKSRPMRPSPPFVGFVEAA 246 (250)
T ss_dssp ESSCGGGGCBTTBCCHHHHHHHHHH
T ss_pred ecCCccccCCCCCCCccHHHHHHHH
Confidence 56777766566 667899999997
No 3
>d1m1eb_ a.161.1.1 (B:) beta-catenin-interacting protein ICAT {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.10 E-value=27 Score=20.62 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=11.3
Q ss_pred hhhhhhHHhhhhh
Q 034282 17 KQKKMSHLMSAQL 29 (99)
Q Consensus 17 KQQKMS~lmSf~~ 29 (99)
.||||-||+..+-
T Consensus 8 tQQkveIL~aLrK 20 (70)
T d1m1eb_ 8 IQQKVRVLLMLRK 20 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999998875
No 4
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
Probab=14.65 E-value=19 Score=20.91 Aligned_cols=9 Identities=33% Similarity=0.504 Sum_probs=7.7
Q ss_pred chhhhhccC
Q 034282 90 YDNFLKAAG 98 (99)
Q Consensus 90 YDnFLKAAG 98 (99)
-|+||+.+|
T Consensus 23 L~k~L~~~g 31 (79)
T d1p9ka_ 23 LCDLLKLEG 31 (79)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHCC
Confidence 389999998
No 5
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=12.86 E-value=70 Score=18.04 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhhhhhhhhHHhh
Q 034282 5 EMAGHCEALLIGKQKKMSHLMS 26 (99)
Q Consensus 5 eMasqCEAL~~GKQQKMS~lmS 26 (99)
....+|+..+-.-.+|+.++..
T Consensus 41 ~L~~~C~~~L~~ae~ki~~l~~ 62 (68)
T d1vp7a_ 41 ELARVCQDRLAQAEQQVKVLEG 62 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4678999999999999998864
No 6
>d1ofux_ c.37.1.22 (X:) Hypothetical protein PA3008 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.78 E-value=34 Score=21.16 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=14.4
Q ss_pred cccCCCCCcchhhhhccC
Q 034282 81 YFRLPASSPYDNFLKAAG 98 (99)
Q Consensus 81 ~frLP~sSPYDnFLKAAG 98 (99)
.+==||-.||-..|.++|
T Consensus 37 ~wI~Pp~~p~a~~L~~~G 54 (119)
T d1ofux_ 37 TLIAPPASLTHEWLRRAG 54 (119)
T ss_dssp EEESCCTTSCHHHHHHTT
T ss_pred EEEcCCCccCHHHHHHcC
Confidence 344578889999999988
No 7
>d1q60a_ d.288.1.1 (A:) General transcription factor II-I {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.57 E-value=38 Score=21.03 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=12.3
Q ss_pred CCCCCcchhhhhccCC
Q 034282 84 LPASSPYDNFLKAAGC 99 (99)
Q Consensus 84 LP~sSPYDnFLKAAGC 99 (99)
=|+--||++|+.-.||
T Consensus 28 ~~V~VPY~k~~~~P~~ 43 (99)
T d1q60a_ 28 QAVKVPFALFESFPED 43 (99)
T ss_dssp SCCCCCHHHHHHCTTT
T ss_pred CceecCHHHHhcCCCe
Confidence 3667899999987664
No 8
>d1dpjb_ a.137.7.1 (B:) Proteinase A inhibitor IA3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.67 E-value=55 Score=15.92 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=10.6
Q ss_pred hhhhhh-HHhhhhhhhhh
Q 034282 17 KQKKMS-HLMSAQLRQES 33 (99)
Q Consensus 17 KQQKMS-~lmSf~~~~~~ 33 (99)
.|||.| +|.|.+.+.+.
T Consensus 2 dqqkvseifqsskeklqg 19 (29)
T d1dpjb_ 2 DQQKVSEIFQSSKEKLQG 19 (29)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHhcc
Confidence 478888 55666655443
No 9
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.42 E-value=51 Score=18.44 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=12.5
Q ss_pred ccCCCCCcchhhhhc
Q 034282 82 FRLPASSPYDNFLKA 96 (99)
Q Consensus 82 frLP~sSPYDnFLKA 96 (99)
..+.|.++||.|++.
T Consensus 23 ~~i~~~~~W~~~~~k 37 (69)
T d2doda1 23 RGVSAFSTWEKELHK 37 (69)
T ss_dssp TTCCSSSCHHHHHHH
T ss_pred cCCCCCCCHHHHHHH
Confidence 468999999999874
No 10
>d1d1ga_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Thermotoga maritima [TaxId: 2336]}
Probab=8.75 E-value=29 Score=21.43 Aligned_cols=21 Identities=5% Similarity=0.347 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHhhh
Q 034282 3 YKEMAGHCEALLIGKQKKMSHLMSA 27 (99)
Q Consensus 3 Y~eMasqCEAL~~GKQQKMS~lmSf 27 (99)
|++++..|.|++||.. ++-++
T Consensus 31 f~~~~~~~~~vimGr~----T~e~~ 51 (164)
T d1d1ga_ 31 FRKITTEIGNVVMGRI----TFEEI 51 (164)
T ss_dssp HHHHHHHHTEEEEEHH----HHHHH
T ss_pred HHHHHcCCCEEEEccc----ccccc
Confidence 6788889999999986 55444
Done!