BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034283
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LE54|SP1L2_ARATH Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1
Length = 110
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 66/110 (60%), Gaps = 17/110 (15%)
Query: 1 MSRGGSYGGGQSSLGYLFGSEEKP-------------AAPPAPQTVSLPPYGIDTTTEKP 47
M RG S GGGQSSLGYLFGS E P ++ AP T + +D+ + P
Sbjct: 1 MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60
Query: 48 QDNQAPNKPNVSNNYHRAQGQNTGNFITDRPSTKVKSVPGGDSSLGYLFG 97
A N +NNY RA+GQNTGNFITDRPSTKV S PGG SSL YLFG
Sbjct: 61 ----AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFG 106
>sp|B3H4F1|SP1L1_ARATH Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1
Length = 113
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 67/109 (61%), Gaps = 13/109 (11%)
Query: 1 MSRGGSYGGGQSSLGYLFGSEE--KPAA--PPAPQTVSLP------PYGIDTTTEKPQDN 50
M RG S GGGQSSLGYLFGS E KPA PAP + +LP P + T
Sbjct: 1 MGRGVSVGGGQSSLGYLFGSGEAPKPAINNAPAPSSETLPISADPSPKHVAAQTVN-VTK 59
Query: 51 QAPNKPNVS--NNYHRAQGQNTGNFITDRPSTKVKSVPGGDSSLGYLFG 97
Q P N S NNY RA GQNTGNF+TDRPSTKV + PGG SSL YLFG
Sbjct: 60 QIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFG 108
>sp|Q8LGD1|SP1L5_ARATH Protein SPIRAL1-like 5 OS=Arabidopsis thaliana GN=SP1L5 PE=2 SV=1
Length = 99
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 62/87 (71%), Gaps = 6/87 (6%)
Query: 16 YLFGSEEK--PAAPPAPQTVSLPPYGIDTTTEKPQDNQAPNKPNVSNN-YHRAQGQNTGN 72
YLFGS+ + P PPYG+D+T E D++A KP +SNN Y R QGQN+GN
Sbjct: 16 YLFGSDNEIPKTPAPPVAPKPAPPYGVDSTEE---DHEADQKPKISNNNYQRVQGQNSGN 72
Query: 73 FITDRPSTKVKSVPGGDSSLGYLFGDK 99
F+TDRP+TKVKSVPGG SSLGYLFGDK
Sbjct: 73 FVTDRPTTKVKSVPGGGSSLGYLFGDK 99
>sp|Q9SJW3|SPR1_ARATH Protein SPIRAL1 OS=Arabidopsis thaliana GN=SPR1 PE=2 SV=1
Length = 119
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 59/115 (51%), Gaps = 19/115 (16%)
Query: 1 MSRGGSYGGGQSSLGYLFGSEEKPA-----------------APPAPQTVSLPPYGIDTT 43
M RG S GGGQSSL YLFG + APP + T+
Sbjct: 1 MGRGNSCGGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 60
Query: 44 TEKPQDN-QAPNKPNV-SNNYHRAQGQNTGNFITDRPSTKVKSVPGGDSSLGYLF 96
E + N Q P NNY RA+GQNTGNF+TDRPSTKV + PGG SSL YLF
Sbjct: 61 VEPAELNKQIPAGIKTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLF 115
>sp|Q9LF22|SP1L4_ARATH Protein SPIRAL1-like 4 OS=Arabidopsis thaliana GN=SP1L4 PE=2 SV=1
Length = 127
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 62/116 (53%), Gaps = 20/116 (17%)
Query: 2 SRGGSYGGGQSSLGYLFGSEEKPAAPPAPQTVS-----------------LPPYGIDTTT 44
+RG + GGG+SSLGYLFGS E P P + P TTT
Sbjct: 4 ARGVNSGGGESSLGYLFGSGESVPKPNKPNAKTGFTTTTTTTTTTDGAGGRPKTTTTTTT 63
Query: 45 EKPQDNQAPNKPNVS---NNYHRAQGQNTGNFITDRPSTKVKSVPGGDSSLGYLFG 97
++ N V NNY+R+ GQN GNF+T+RPSTKV + PGG SSLGYLFG
Sbjct: 64 TGDKNKTEENSAGVRGSPNNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLFG 119
>sp|Q2QQ99|SP1L3_ORYSJ Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica
GN=Os12g0502000 PE=2 SV=1
Length = 101
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 16 YLFGSEEKPAAPPAPQTVSLPPYGIDTTTEKPQDNQAPNKPNVSNNYHRAQGQNTGNFIT 75
YLFG E P + P V P ++ EK ++ A + + +NNY RA+GQN GNF+T
Sbjct: 16 YLFGGGEAPKSAEKPAPVQKP--APSSSAEKLKEIPAGIQSSKANNYMRAEGQNCGNFLT 73
Query: 76 DRPSTKVKSVPGGDSSLGYLF 96
DRPSTKV++ PGG SSL YLF
Sbjct: 74 DRPSTKVQAAPGGGSSLDYLF 94
>sp|Q2R0W8|SP1L2_ORYSJ Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica
GN=Os11g0629400 PE=2 SV=1
Length = 115
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 41/55 (74%)
Query: 45 EKPQDNQAPNKPNVSNNYHRAQGQNTGNFITDRPSTKVKSVPGGDSSLGYLFGDK 99
EK ++ A + +NNY RAQGQN GNF+TDRPSTKV + PGG SSLGYLFG K
Sbjct: 61 EKMKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFGGK 115
>sp|Q7Y1L9|SP1L1_ORYSJ Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica
GN=Os03g0417800 PE=2 SV=1
Length = 116
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Query: 37 PYGIDTTTEKPQDNQAPNKPNVSNNYHRAQGQNTGNFITDRPSTKVKSVPGGDSSLGYLF 96
P D T + P Q +NNYHRA GQNTGNF+TDRPSTKV + PGG SSLGYLF
Sbjct: 57 PAKADATKQIPAGIQGSRS---NNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLF 113
Query: 97 G 97
G
Sbjct: 114 G 114
>sp|Q9S7P8|SP1L3_ARATH Protein SPIRAL1-like 3 OS=Arabidopsis thaliana GN=SP1L3 PE=2 SV=1
Length = 122
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 32/38 (84%)
Query: 60 NNYHRAQGQNTGNFITDRPSTKVKSVPGGDSSLGYLFG 97
NNY R++GQN GNF+TDRPSTKV + PGG SSL YLFG
Sbjct: 75 NNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFG 112
>sp|Q7XQ83|SP1L4_ORYSJ Protein SPIRAL1-like 4 OS=Oryza sativa subsp. japonica
GN=Os04g0578300 PE=3 SV=1
Length = 127
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 54/109 (49%), Gaps = 23/109 (21%)
Query: 14 LGYLFGSEEKPAAP----PAPQTVSLPPYG------IDTTTEKPQDNQAP---------- 53
LGYLF E + P + Q + P G + E Q++QA
Sbjct: 17 LGYLFEPEPEDIIPDHSTKSVQGTNKAPKGNIVLGDKMASDEADQEHQAAAPLKKEDSNP 76
Query: 54 --NKPNVSNNYHRAQ-GQNTGNFITDRPSTKVKSVPGGDSSLGYLFGDK 99
+ + SN YH Q G N+G ITDRPST+V+ PGG SSLG+LFGD+
Sbjct: 77 IVSSRSASNIYHTNQVGNNSGLLITDRPSTRVRCAPGGPSSLGFLFGDE 125
>sp|Q75IC7|SCAM4_ORYSJ Secretory carrier-associated membrane protein 4 OS=Oryza sativa
subsp. japonica GN=SCAMP4 PE=2 SV=1
Length = 313
Score = 35.8 bits (81), Expect = 0.078, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 2 SRGGSYGGGQSSLGYLFGSEEKPAAPPAPQTVSLPPYGID 41
S+GGS G S G + ++ +P+APPA LPP D
Sbjct: 27 SKGGSAGQSSYSGGAFYTTQSRPSAPPATHLSPLPPEPAD 66
>sp|Q71ZZ7|IF2_LISMF Translation initiation factor IF-2 OS=Listeria monocytogenes
serotype 4b (strain F2365) GN=infB PE=3 SV=1
Length = 782
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 41 DTTTEKPQDNQAPNKPNVSNNYHRAQGQNTGNFITDRPSTKVKS 84
+TT+ + +++ PNKPN++N+ ++ N ++P+T KS
Sbjct: 63 ETTSNENGNSKGPNKPNMTNSNEKSNKPNNPAGQANKPATANKS 106
>sp|C1L2N1|IF2_LISMC Translation initiation factor IF-2 OS=Listeria monocytogenes
serotype 4b (strain CLIP80459) GN=infB PE=3 SV=1
Length = 782
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 41 DTTTEKPQDNQAPNKPNVSNNYHRAQGQNTGNFITDRPSTKVKS 84
+TT+ + +++ PNKPN++N+ ++ N ++P+T KS
Sbjct: 63 ETTSNENGNSKGPNKPNMTNSNEKSNKPNNPAGQANKPATANKS 106
>sp|B8DG02|IF2_LISMH Translation initiation factor IF-2 OS=Listeria monocytogenes
serotype 4a (strain HCC23) GN=infB PE=3 SV=1
Length = 781
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 41 DTTTEKPQDNQAPNKPNVSNNYHRAQGQNTGNFITDRPSTKVKS 84
+TT+ + +++ PNKPN++N+ ++ N ++P+T KS
Sbjct: 63 ETTSNENGNSKGPNKPNMTNSNEKSNKPNKPAGQANKPATANKS 106
>sp|Q92C29|IF2_LISIN Translation initiation factor IF-2 OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=infB PE=3 SV=1
Length = 782
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 41 DTTTEKPQDNQAPNKPNVSNNYHRAQGQNTGNFITDRPSTKVKS 84
+TT+ + +++ PNKPN++N+ ++ N ++P+T KS
Sbjct: 63 ETTSNENGNSKGPNKPNMTNSNEKSNKPNKPAGQANKPATANKS 106
>sp|Q8Y7F6|IF2_LISMO Translation initiation factor IF-2 OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=infB PE=3
SV=1
Length = 779
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 41 DTTTEKPQDNQAPNKPNVSNNYHRAQGQNTGNFITDRPSTKVKS 84
+TT+ + +++ PNKPN++N+ ++ N ++P+T KS
Sbjct: 63 ETTSNENGNSKGPNKPNMTNSNEKSNKPNKPAGQANKPATANKS 106
>sp|A0AIC6|IF2_LISW6 Translation initiation factor IF-2 OS=Listeria welshimeri serovar
6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=infB
PE=3 SV=1
Length = 780
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 41 DTTTEKPQDNQAPNKPNVSNNYHRAQGQNTGNFITDRPSTKVKS 84
+TT+ + +++ PNKPN++N+ ++ N +P+T KS
Sbjct: 63 ETTSNENGNSKGPNKPNMTNSNEKSNKPNKPAGQATKPATANKS 106
>sp|Q17M80|MMSA_AEDAE Probable methylmalonate-semialdehyde dehydrogenase [acylating],
mitochondrial OS=Aedes aegypti GN=AAEL001134 PE=3 SV=1
Length = 521
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 50 NQAPNKPNVSNNYHRAQGQNTGNFITDRPSTKVKSVPGGDSSLGYLF 96
N+A P V N H A + NFI D P+ K S G D + Y++
Sbjct: 213 NEAGCPPGVVNVIHGAH--DAVNFICDNPTIKAVSFVGSDQAGKYIY 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,815,617
Number of Sequences: 539616
Number of extensions: 1925824
Number of successful extensions: 5221
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 5118
Number of HSP's gapped (non-prelim): 122
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)