Query 034283
Match_columns 99
No_of_seqs 92 out of 101
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 20:17:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k0l_A Outer membrane protein 25.0 46 0.0016 22.7 2.4 9 14-22 188-196 (216)
2 2gqb_A Conserved hypothetical 18.3 1.1E+02 0.0037 22.0 3.3 12 14-25 8-19 (130)
3 1r5s_A GAP junction alpha-1 pr 14.6 1.7E+02 0.0058 20.9 3.6 15 63-77 53-67 (132)
4 2wno_A Tumor necrosis factor-i 13.3 41 0.0014 22.4 0.0 14 65-78 133-146 (149)
5 1wot_A Putative minimal nucleo 11.0 45 0.0015 20.8 -0.4 7 15-21 28-34 (98)
6 1no5_A Hypothetical protein HI 10.8 49 0.0017 21.1 -0.2 9 15-23 30-38 (114)
7 1smz_A Transportan in bicellar 10.1 56 0.0019 17.8 -0.1 8 13-20 6-13 (27)
8 1uvq_C Orexin; immunology, MHC 10.0 86 0.003 17.7 0.6 14 77-90 8-23 (33)
9 1ylq_A Putative nucleotidyltra 8.8 59 0.002 20.2 -0.4 6 15-20 20-25 (96)
10 2k7m_A GAP junction alpha-5 pr 7.9 1.7E+02 0.0057 20.2 1.5 22 59-80 31-54 (109)
No 1
>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae}
Probab=24.99 E-value=46 Score=22.67 Aligned_cols=9 Identities=44% Similarity=1.032 Sum_probs=6.6
Q ss_pred cccccCCCC
Q 034283 14 LGYLFGSEE 22 (99)
Q Consensus 14 LGYLFGsge 22 (99)
|+|-||..+
T Consensus 188 l~Y~Fg~~~ 196 (216)
T 2k0l_A 188 VSYRFGQED 196 (216)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 788998643
No 2
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=18.33 E-value=1.1e+02 Score=21.97 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=8.6
Q ss_pred cccccCCCCCCC
Q 034283 14 LGYLFGSEEKPA 25 (99)
Q Consensus 14 LGYLFGsge~p~ 25 (99)
++=|||+.++..
T Consensus 8 ~~kIfg~~~~aa 19 (130)
T 2gqb_A 8 MSAIFGDSAAAS 19 (130)
T ss_dssp HHHHTCCCSSCT
T ss_pred HHHHhCCccccc
Confidence 456899887753
No 3
>1r5s_A GAP junction alpha-1 protein; CX43CT, membrane protein; NMR {Rattus norvegicus} SCOP: f.50.1.1
Probab=14.63 E-value=1.7e+02 Score=20.91 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=11.5
Q ss_pred cccCCCcccceeccC
Q 034283 63 HRAQGQNTGNFITDR 77 (99)
Q Consensus 63 ~r~~gqN~GNfiTdr 77 (99)
..+.-||..|+.|++
T Consensus 53 ~laSEQNWAN~atEq 67 (132)
T 1r5s_A 53 KQASEQNWANYSAEQ 67 (132)
T ss_dssp CCSCSCSSCCTTCCH
T ss_pred cchhhhhhhhhhhhh
Confidence 345579999999954
No 4
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=13.31 E-value=41 Score=22.39 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=0.0
Q ss_pred cCCCcccceeccCC
Q 034283 65 AQGQNTGNFITDRP 78 (99)
Q Consensus 65 ~~gqN~GNfiTdrp 78 (99)
.-.|||+|||+.|-
T Consensus 133 ~~~~~c~n~~~g~~ 146 (149)
T 2wno_A 133 TTSTGNKNFLAGRF 146 (149)
T ss_dssp --------------
T ss_pred ccccCCCceecccc
Confidence 44689999998763
No 5
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=10.99 E-value=45 Score=20.81 Aligned_cols=7 Identities=43% Similarity=0.505 Sum_probs=5.0
Q ss_pred ccccCCC
Q 034283 15 GYLFGSE 21 (99)
Q Consensus 15 GYLFGsg 21 (99)
=|||||-
T Consensus 28 v~LFGS~ 34 (98)
T 1wot_A 28 VRVFGSV 34 (98)
T ss_dssp CEECSHH
T ss_pred EEEEccc
Confidence 4888873
No 6
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=10.84 E-value=49 Score=21.07 Aligned_cols=9 Identities=44% Similarity=0.634 Sum_probs=6.3
Q ss_pred ccccCCCCC
Q 034283 15 GYLFGSEEK 23 (99)
Q Consensus 15 GYLFGsge~ 23 (99)
=|||||-..
T Consensus 30 v~LFGS~Ar 38 (114)
T 1no5_A 30 VWAFGSRVK 38 (114)
T ss_dssp EEEEGGGTT
T ss_pred EEEEeccCC
Confidence 489998443
No 7
>1smz_A Transportan in bicellar solution with [DMPC]/[DHPC]=0.33; transport protein; NMR {Synthetic} SCOP: j.6.1.1
Probab=10.15 E-value=56 Score=17.83 Aligned_cols=8 Identities=63% Similarity=1.169 Sum_probs=6.1
Q ss_pred ccccccCC
Q 034283 13 SLGYLFGS 20 (99)
Q Consensus 13 SLGYLFGs 20 (99)
|-|||.|.
T Consensus 6 SAGYLLGp 13 (27)
T 1smz_A 6 SAGYLLGK 13 (27)
T ss_dssp HHTTTTTT
T ss_pred ccceeecc
Confidence 56899884
No 8
>1uvq_C Orexin; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens}
Probab=9.96 E-value=86 Score=17.67 Aligned_cols=14 Identities=64% Similarity=0.838 Sum_probs=8.5
Q ss_pred CCcccee--eCCCCCc
Q 034283 77 RPSTKVK--SVPGGDS 90 (99)
Q Consensus 77 rpstrv~--a~PGG~S 90 (99)
-|||||- +.-||+|
T Consensus 8 ~pSTKVsWAaVtgggs 23 (33)
T 1uvq_C 8 LPSTKVSWAAVGGGGS 23 (33)
T ss_pred CCccccceEEecCCce
Confidence 4899985 3344444
No 9
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=8.85 E-value=59 Score=20.18 Aligned_cols=6 Identities=67% Similarity=1.176 Sum_probs=4.1
Q ss_pred ccccCC
Q 034283 15 GYLFGS 20 (99)
Q Consensus 15 GYLFGs 20 (99)
=|||||
T Consensus 20 v~LFGS 25 (96)
T 1ylq_A 20 IYLYGS 25 (96)
T ss_dssp EEEESH
T ss_pred EEEEEE
Confidence 377776
No 10
>2k7m_A GAP junction alpha-5 protein; cell junction, cell membrane, membrane, transmembrane, membrane protein; NMR {Rattus norvegicus}
Probab=7.94 E-value=1.7e+02 Score=20.22 Aligned_cols=22 Identities=9% Similarity=0.240 Sum_probs=15.9
Q ss_pred CCcccc--cCCCcccceeccCCcc
Q 034283 59 SNNYHR--AQGQNTGNFITDRPST 80 (99)
Q Consensus 59 ~Nny~r--~~gqN~GNfiTdrpst 80 (99)
+++|+. +.-||+.|+-|.|=..
T Consensus 31 ~~~~~~~laS~qN~an~~aEq~~~ 54 (109)
T 2k7m_A 31 FSDFSNNMGSRKNPDPLATEEVPN 54 (109)
T ss_dssp STTSCSTTSSCSCCCSSSSSCCSS
T ss_pred cccccccchhhhhhhhhhhhcccc
Confidence 566754 5569999999886543
Done!