Query 034283
Match_columns 99
No_of_seqs 92 out of 101
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 20:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034283.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034283hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1skza1 g.3.15.1 (A:7-58) Fact 49.3 2.3 0.00017 24.8 0.6 18 70-87 12-34 (52)
2 d1wiga1 g.39.1.3 (A:1-32) Acti 15.6 21 0.0015 18.9 0.6 10 68-77 9-18 (32)
3 d2gqba1 a.282.1.1 (A:1-130) Hy 15.6 83 0.0061 20.8 3.9 11 14-24 8-18 (130)
4 d1no5a_ d.218.1.5 (A:) Hypothe 14.1 16 0.0012 21.7 -0.2 9 15-23 25-33 (100)
5 d1wota_ d.218.1.5 (A:) Unnamed 10.6 22 0.0016 21.2 -0.4 7 15-21 28-34 (98)
6 d2h9fa1 d.21.1.4 (A:1-182) Hyp 9.6 25 0.0018 24.5 -0.4 10 66-75 100-109 (182)
7 d1u0la2 c.37.1.8 (A:69-293) Pr 8.8 30 0.0022 24.0 -0.3 19 5-23 102-121 (225)
8 d2j01p1 c.12.1.1 (P:5-150) Rib 8.2 71 0.0052 20.0 1.4 9 17-25 46-54 (146)
9 d2dloa1 g.39.1.3 (A:8-42) Thyr 8.0 51 0.0037 17.5 0.5 10 68-77 12-21 (35)
10 d2gycj1 c.12.1.1 (J:4-143) Rib 6.9 86 0.0063 19.3 1.4 13 1-13 16-28 (140)
No 1
>d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
Probab=49.33 E-value=2.3 Score=24.85 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=14.0
Q ss_pred ccceeccCCc-----cceeeCCC
Q 034283 70 TGNFITDRPS-----TKVKSVPG 87 (99)
Q Consensus 70 ~GNfiTdrps-----trv~a~PG 87 (99)
.-|+||||-+ .|||+|-|
T Consensus 12 acniitdrctcsgvrcrvhcphg 34 (52)
T d1skza1 12 ACNIITDRCTCSGVRCRVHCPHG 34 (52)
T ss_dssp BCCTTTCSSCBCCCSSCCCCTTC
T ss_pred cceeeccceeeccceEEEECCCc
Confidence 3489999987 58888765
No 2
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.61 E-value=21 Score=18.87 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=8.6
Q ss_pred CcccceeccC
Q 034283 68 QNTGNFITDR 77 (99)
Q Consensus 68 qN~GNfiTdr 77 (99)
..|.+|||.|
T Consensus 9 ~~C~~~ItGk 18 (32)
T d1wiga1 9 DSCEKYITGR 18 (32)
T ss_dssp SSSCCCCSSC
T ss_pred hhhhhhhhhh
Confidence 6899999986
No 3
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=15.57 E-value=83 Score=20.82 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=7.6
Q ss_pred cccccCCCCCC
Q 034283 14 LGYLFGSEEKP 24 (99)
Q Consensus 14 LGYLFGsge~p 24 (99)
++=+||..++.
T Consensus 8 ~~kIFG~~~~~ 18 (130)
T d2gqba1 8 MSAIFGDSAAA 18 (130)
T ss_dssp HHHHTCCCSSC
T ss_pred HHHHcCCcccc
Confidence 34579987765
No 4
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]}
Probab=14.09 E-value=16 Score=21.69 Aligned_cols=9 Identities=44% Similarity=0.634 Sum_probs=6.7
Q ss_pred ccccCCCCC
Q 034283 15 GYLFGSEEK 23 (99)
Q Consensus 15 GYLFGsge~ 23 (99)
=|||||-..
T Consensus 25 v~LFGS~ar 33 (100)
T d1no5a_ 25 VWAFGSRVK 33 (100)
T ss_dssp EEEEGGGTT
T ss_pred EEEECCCCC
Confidence 499998654
No 5
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=10.64 E-value=22 Score=21.16 Aligned_cols=7 Identities=43% Similarity=0.505 Sum_probs=5.3
Q ss_pred ccccCCC
Q 034283 15 GYLFGSE 21 (99)
Q Consensus 15 GYLFGsg 21 (99)
=|||||-
T Consensus 28 v~lFGS~ 34 (98)
T d1wota_ 28 VRVFGSV 34 (98)
T ss_dssp CEECSHH
T ss_pred EEEECCc
Confidence 4899983
No 6
>d2h9fa1 d.21.1.4 (A:1-182) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.61 E-value=25 Score=24.46 Aligned_cols=10 Identities=40% Similarity=0.438 Sum_probs=8.2
Q ss_pred CCCcccceec
Q 034283 66 QGQNTGNFIT 75 (99)
Q Consensus 66 ~gqN~GNfiT 75 (99)
..+||||++.
T Consensus 100 ~~~NCGNm~s 109 (182)
T d2h9fa1 100 WSGNCGNLST 109 (182)
T ss_dssp CSCCCHHHHH
T ss_pred ccccccchhh
Confidence 3799999875
No 7
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=8.83 E-value=30 Score=23.98 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=14.1
Q ss_pred ccCCCCcccc-ccccCCCCC
Q 034283 5 GSYGGGQSSL-GYLFGSEEK 23 (99)
Q Consensus 5 vSsGGGQSSL-GYLFGsge~ 23 (99)
++||-|+||| .+|.+..+.
T Consensus 102 G~SGVGKSTLiN~L~~~~~~ 121 (225)
T d1u0la2 102 GLSGVGKSSLLNAINPGLKL 121 (225)
T ss_dssp CSTTSSHHHHHHHHSTTCCC
T ss_pred CCCCCCHHHHHHhhcchhhh
Confidence 5799999997 777765443
No 8
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}
Probab=8.16 E-value=71 Score=20.03 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=6.9
Q ss_pred ccCCCCCCC
Q 034283 17 LFGSEEKPA 25 (99)
Q Consensus 17 LFGsge~p~ 25 (99)
.|..+..|.
T Consensus 46 gFEGGQ~Pl 54 (146)
T d2j01p1 46 RFEGGRSTT 54 (146)
T ss_dssp SCCSSSCTT
T ss_pred hhccCCCCc
Confidence 588888874
No 9
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.04 E-value=51 Score=17.48 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=7.9
Q ss_pred CcccceeccC
Q 034283 68 QNTGNFITDR 77 (99)
Q Consensus 68 qN~GNfiTdr 77 (99)
--||.+||||
T Consensus 12 ~~C~~~I~dr 21 (35)
T d2dloa1 12 ATCSQPILDR 21 (35)
T ss_dssp TTTCCBCCSC
T ss_pred HHhchHHHHH
Confidence 3578899997
No 10
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}
Probab=6.88 E-value=86 Score=19.34 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=0.0
Q ss_pred CCCCccCCCCccc
Q 034283 1 MSRGGSYGGGQSS 13 (99)
Q Consensus 1 MgRGvSsGGGQSS 13 (99)
.|||..||-|.+|
T Consensus 16 ~gRG~gsg~Gkt~ 28 (140)
T d2gycj1 16 LGRGIGSGLGKTG 28 (140)
T ss_dssp SSSCCCSSSCCSS
T ss_pred ccCCCCCCCCCCC
Done!