BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034284
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 33 RYVKPSKITKDMDVDRELTKFINHCNEVKAATLANKEGGQLSI 75
+YV + +T M++DR +T + +C + + +N GQLS+
Sbjct: 60 KYVSQNCVTSPMNIDRNITH-LQYCVCIDDCSSSNCMCGQLSM 101
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 33 RYVKPSKITKDMDVDRELTKFINHCNEVKAATLANKEGGQLSI 75
+YV + +T M++DR +T + +C + + +N GQLS+
Sbjct: 59 KYVSQNCVTSPMNIDRNITH-LQYCVCIDDCSSSNCMCGQLSM 100
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human
Euchromatic Histone Methyltransferase 1 In Complex With
Sah And Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human
Euchromatic Histone Methyltransferase 1 In Complex With
Sah And Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex
With Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex
With Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex
With Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex
With Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex
With Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex
With Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex
With Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex
With Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex
With Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex
With Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 33 RYVKPSKITKDMDVDRELTKFINHCNEVKAATLANKEGGQLSI 75
+YV + +T M++DR +T + +C + + +N GQLS+
Sbjct: 58 KYVSQNCVTSPMNIDRNITH-LQYCVCIDDCSSSNCMCGQLSM 99
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 33 RYVKPSKITKDMDVDRELTKFINHCNEVKAATLANKEGGQLSI 75
+YV + +T M++DR +T + +C + + +N GQLS+
Sbjct: 34 KYVSQNCVTSPMNIDRNITH-LQYCVCIDDCSSSNCMCGQLSM 75
>pdb|4EHI|A Chain A, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
pdb|4EHI|B Chain B, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
Length = 534
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 2 TQKGNLFKGQQKKKTVPPNRHGKIIQARKGKRYVKPSKITKDMDVD 47
T+ LF+G + KT+ P HG I+ R + ++K +K + + +D
Sbjct: 75 TKSPELFEG--RVKTLHPKIHGGILHKRSDENHIKQAKENEILGID 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.307 0.125 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,775,591
Number of Sequences: 62578
Number of extensions: 90855
Number of successful extensions: 164
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 6
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)