BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034284
         (99 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9P7I8|U390_SCHPO UPF0390 protein C24B10.18 OS=Schizosaccharomyces pombe (strain
          972 / ATCC 24843) GN=SPCC24B10.18 PE=3 SV=1
          Length = 93

 Score = 34.3 bits (77), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 29 RKGKRYVKPSKIT--KDMDVDRELTKFINHCNEVKAATLANKEGGQLSIVKPPAESSA 84
          +KG RY  P +    KD  ++  +TK +N  NE   A +A+++ G+L+I K   E+ A
Sbjct: 28 KKGARYCAPRRAAAIKDHTINANITKTLNVRNEKLIAGIASQQVGKLTITKALGEAGA 85


>sp|Q5LV90|RL25_RUEPO 50S ribosomal protein L25 OS=Ruegeria pomeroyi (strain ATCC 700808
           / DSM 15171 / DSS-3) GN=rplY PE=3 SV=1
          Length = 207

 Score = 31.2 bits (69), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 10/60 (16%)

Query: 33  RYVKPSKITKDMDVDRELTKFINHCNEVKAATLANKEGGQLSIVKPPAESSATAGNKKDS 92
           R  + S+I   + VD     F+NH     AA    K+GG L++V+P  E   TAG+  +S
Sbjct: 98  RLRRTSRIKLFIHVD-----FVNH-----AAAPGLKKGGVLTVVRPEVELEVTAGDIPES 147


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.125    0.343 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,783,968
Number of Sequences: 539616
Number of extensions: 1204137
Number of successful extensions: 2401
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2399
Number of HSP's gapped (non-prelim): 15
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)