Query 034284
Match_columns 99
No_of_seqs 22 out of 24
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 11:48:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09495 DUF2462: Protein of u 98.9 3.4E-09 7.3E-14 71.5 5.8 77 1-81 1-80 (82)
2 KOG4069 Uncharacterized conser 27.7 38 0.00082 26.0 1.5 18 47-64 107-124 (154)
3 PF07862 Nif11: Nitrogen fixat 22.2 1.2E+02 0.0025 17.7 2.6 33 42-74 11-44 (49)
4 PF03891 DUF333: Domain of unk 20.0 1.3E+02 0.0028 18.6 2.5 20 62-81 7-26 (50)
5 PF13466 STAS_2: STAS domain 16.9 1.5E+02 0.0033 17.8 2.4 22 61-82 49-70 (80)
6 PF11461 RILP: Rab interacting 14.7 1.2E+02 0.0025 19.9 1.5 16 49-64 4-19 (60)
7 KOG1768 40s ribosomal protein 12.8 3.2E+02 0.0069 20.2 3.5 35 30-65 13-50 (115)
8 PF01633 Choline_kinase: Choli 12.2 2.1E+02 0.0047 20.2 2.4 21 51-71 15-35 (211)
9 PF13807 GNVR: G-rich domain o 11.4 4.5E+02 0.0097 16.6 3.7 41 43-85 12-53 (82)
10 KOG3994 Uncharacterized conser 11.2 1.7E+02 0.0038 24.5 1.9 25 42-66 182-208 (291)
No 1
>PF09495 DUF2462: Protein of unknown function (DUF2462); InterPro: IPR019034 This protein family is highly conserved, but its function is unknown. It can be isolated from HeLa cell nucleoli and contains the Leydig cell tumor 10 kDa protein homologs [].
Probab=98.91 E-value=3.4e-09 Score=71.52 Aligned_cols=77 Identities=32% Similarity=0.434 Sum_probs=58.1
Q ss_pred CCcccccccccccccCCCCCCCCccceecC-CccccCCCccc--ccchhhHHHHHHHHhhhHHHHHHHHHhcCCeeEEec
Q 034284 1 MTQKGNLFKGQQKKKTVPPNRHGKIIQARK-GKRYVKPSKIT--KDMDVDRELTKFINHCNEVKAATLANKEGGQLSIVK 77 (99)
Q Consensus 1 m~qk~~lfkg~~KkKt~aaNRHGK~~k~RK-GKr~~kP~k~t--kd~~~~~elTK~IN~~NE~~aA~~A~k~GGkL~IvK 77 (99)
|.|-.-=|+.+.-......++++. .+++ |.|+++|.+.. +++...+.||+.||.+||.+.+.+|++ |.|.||+
T Consensus 1 MAQG~~K~K~k~~~~~k~~~kk~~--~~kK~g~r~i~PKK~~~v~~~klkK~lt~~i~~~~E~~l~~rAs~--G~L~llk 76 (82)
T PF09495_consen 1 MAQGKLKFKAKKPKKKKAAKKKAK--GPKKKGKRVIAPKKAKAVKQQKLKKKLTKGINKKIEKELASRASS--GKLELLK 76 (82)
T ss_pred CCCCCcccccCCCCCCcccccccC--CCCCCCCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCceeec
Confidence 778774344432111113444443 4566 99999999865 889999999999999999999999999 9999999
Q ss_pred CCCc
Q 034284 78 PPAE 81 (99)
Q Consensus 78 ~p~e 81 (99)
.+.+
T Consensus 77 ~~~~ 80 (82)
T PF09495_consen 77 GGKK 80 (82)
T ss_pred cccc
Confidence 7643
No 2
>KOG4069 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.74 E-value=38 Score=26.02 Aligned_cols=18 Identities=33% Similarity=0.325 Sum_probs=14.5
Q ss_pred hHHHHHHHHhhhHHHHHH
Q 034284 47 DRELTKFINHCNEVKAAT 64 (99)
Q Consensus 47 ~~elTK~IN~~NE~~aA~ 64 (99)
=++||||||.-||.--+.
T Consensus 107 L~klskfl~~qNe~IY~~ 124 (154)
T KOG4069|consen 107 LDKLSKFLNRQNEEIYHH 124 (154)
T ss_pred HHHHHHHHHhhhhhhccc
Confidence 468999999999976543
No 3
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=22.20 E-value=1.2e+02 Score=17.68 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=26.5
Q ss_pred ccchhhHHHHHHHHhh-hHHHHHHHHHhcCCeeE
Q 034284 42 KDMDVDRELTKFINHC-NEVKAATLANKEGGQLS 74 (99)
Q Consensus 42 kd~~~~~elTK~IN~~-NE~~aA~~A~k~GGkL~ 74 (99)
.....|.+|-..|+.| |--+...+|...|=.|+
T Consensus 11 ~~~~~d~~l~~~l~~~~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 11 EKVKSDPELREQLKACQNPEEVVALAREAGYDFT 44 (49)
T ss_pred HHHhcCHHHHHHHHhcCCHHHHHHHHHHcCCCCC
Confidence 3456789999999998 88888889988885554
No 4
>PF03891 DUF333: Domain of unknown function (DUF333); InterPro: IPR005590 This family consists of bacterial proteins whose function has not been characterised.
Probab=20.02 E-value=1.3e+02 Score=18.62 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=16.8
Q ss_pred HHHHHHhcCCeeEEecCCCc
Q 034284 62 AATLANKEGGQLSIVKPPAE 81 (99)
Q Consensus 62 aA~~A~k~GGkL~IvK~p~e 81 (99)
|+.--.+.||+|.|.+.+.+
T Consensus 7 As~yC~~~GG~~~~~~~~~G 26 (50)
T PF03891_consen 7 ASVYCVEQGGKLEIRKQPDG 26 (50)
T ss_pred HHHHHHHhCCEEEEEEcCCC
Confidence 56667889999999998876
No 5
>PF13466 STAS_2: STAS domain
Probab=16.94 E-value=1.5e+02 Score=17.81 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCeeEEecCCCcc
Q 034284 61 KAATLANKEGGQLSIVKPPAES 82 (99)
Q Consensus 61 ~aA~~A~k~GGkL~IvK~p~e~ 82 (99)
.+++.+...|++|.|+-+++..
T Consensus 49 ~~~~~~~~~g~~~~l~~~~~~~ 70 (80)
T PF13466_consen 49 AAARRARARGRQLRLTGPSPAL 70 (80)
T ss_pred HHHHHHHHCCCeEEEEcCCHHH
Confidence 4567788899999999877653
No 6
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=14.75 E-value=1.2e+02 Score=19.87 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=12.9
Q ss_pred HHHHHHHhhhHHHHHH
Q 034284 49 ELTKFINHCNEVKAAT 64 (99)
Q Consensus 49 elTK~IN~~NE~~aA~ 64 (99)
||-.-|+.+||+++=-
T Consensus 4 ELr~VL~ERNeLK~~v 19 (60)
T PF11461_consen 4 ELREVLQERNELKARV 19 (60)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777899999998743
No 7
>KOG1768 consensus 40s ribosomal protein S26 [Translation, ribosomal structure and biogenesis]
Probab=12.81 E-value=3.2e+02 Score=20.17 Aligned_cols=35 Identities=31% Similarity=0.458 Sum_probs=25.0
Q ss_pred CCccccCCC---cccccchhhHHHHHHHHhhhHHHHHHH
Q 034284 30 KGKRYVKPS---KITKDMDVDRELTKFINHCNEVKAATL 65 (99)
Q Consensus 30 KGKr~~kP~---k~tkd~~~~~elTK~IN~~NE~~aA~~ 65 (99)
+|--.+.|. ..+.-|-.|+.|-+|+ -+|+++||.+
T Consensus 13 ~~~g~v~~i~c~~c~~~~~kdKaIk~f~-i~niVEaaav 50 (115)
T KOG1768|consen 13 KGRGHVIPIRCTNCGRCMPKDKAIKRFV-IRNIVEAAAV 50 (115)
T ss_pred CCCcceeeeeeccccccchHHHHHHHHH-HHHHHHHHHh
Confidence 444456664 4446688888888887 7899998865
No 8
>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2.7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....
Probab=12.19 E-value=2.1e+02 Score=20.24 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=17.7
Q ss_pred HHHHHhhhHHHHHHHHHhcCC
Q 034284 51 TKFINHCNEVKAATLANKEGG 71 (99)
Q Consensus 51 TK~IN~~NE~~aA~~A~k~GG 71 (99)
..+||..+|..+..+|...|=
T Consensus 15 ~~~idr~~E~~~~~~l~~~g~ 35 (211)
T PF01633_consen 15 ENFIDRENENEALKLLSEAGL 35 (211)
T ss_dssp CSHHHHHHHHHHHHHHHHTTS
T ss_pred ccccCHHHHHHHHHHHHHcCC
Confidence 347999999999999998763
No 9
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=11.43 E-value=4.5e+02 Score=16.61 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=27.1
Q ss_pred cchhhHHH-HHHHHhhhHHHHHHHHHhcCCeeEEecCCCccccc
Q 034284 43 DMDVDREL-TKFINHCNEVKAATLANKEGGQLSIVKPPAESSAT 85 (99)
Q Consensus 43 d~~~~~el-TK~IN~~NE~~aA~~A~k~GGkL~IvK~p~e~~~~ 85 (99)
|.+.+.++ ...+|..+|...+. ..+.+.++||-++-.+..+
T Consensus 12 ~~~~~~~~Y~~Ll~r~~e~~~~~--~~~~~~~~ivd~A~~P~~P 53 (82)
T PF13807_consen 12 DVEIKRELYETLLQRYEEARLSK--ASNVSNVRIVDPAIVPDKP 53 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hccCCCceeccccccCCCC
Confidence 34444444 34458888888775 5566689999987666544
No 10
>KOG3994 consensus Uncharacterized conserved protein [Function unknown]
Probab=11.16 E-value=1.7e+02 Score=24.51 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=20.3
Q ss_pred ccchhhHH--HHHHHHhhhHHHHHHHH
Q 034284 42 KDMDVDRE--LTKFINHCNEVKAATLA 66 (99)
Q Consensus 42 kd~~~~~e--lTK~IN~~NE~~aA~~A 66 (99)
++++..+| +.||||..||+=-+-++
T Consensus 182 ee~eiErekL~akFI~~A~eiC~~L~~ 208 (291)
T KOG3994|consen 182 EEGEIEREKLAAKFILAAREICDRLLS 208 (291)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67778888 99999999998765544
Done!