Query 034284
Match_columns 99
No_of_seqs 22 out of 24
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 20:18:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yhn_B RILP, RAB interacting l 13.2 86 0.0029 20.2 1.5 16 48-63 3-18 (65)
2 1laj_A Capsid protein; anti-pa 11.7 47 0.0016 25.7 -0.1 43 27-69 12-54 (217)
3 2qn6_B Translation initiation 10.8 2.2E+02 0.0076 18.4 3.0 26 47-77 67-92 (93)
4 1sbo_A Putative anti-sigma fac 10.7 1.5E+02 0.0053 17.2 2.0 21 62-82 68-88 (110)
5 2z34_C Protein HIR1; histone c 10.6 97 0.0033 17.1 1.0 17 22-38 6-22 (29)
6 2lkw_A Membrane fusion protein 10.4 98 0.0033 16.7 0.9 16 70-85 2-17 (26)
7 2ka5_A Putative anti-sigma fac 10.0 1.5E+02 0.0052 18.6 1.9 21 62-82 76-96 (125)
8 2eo2_A Adult MALE hypothalamus 9.8 1.1E+02 0.0038 19.9 1.2 27 28-54 22-59 (71)
9 1th8_B Anti-sigma F factor ant 9.7 1.7E+02 0.0057 17.3 1.9 21 62-82 67-87 (116)
10 4hyl_A Stage II sporulation pr 9.5 1.7E+02 0.006 17.6 2.0 21 62-82 66-86 (117)
No 1
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=13.16 E-value=86 Score=20.20 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhHHHHH
Q 034284 48 RELTKFINHCNEVKAA 63 (99)
Q Consensus 48 ~elTK~IN~~NE~~aA 63 (99)
.||..-+..+||++|-
T Consensus 3 ~Elr~iLqERNELKa~ 18 (65)
T 1yhn_B 3 EEFEQILQERNELKAK 18 (65)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677789999999874
No 2
>1laj_A Capsid protein; anti-parallel beta sheets, jelly roll, T=3 icosahedral virus, protein-RNA complex, disulphide bridge, icosahedral virus; 3.40A {Tomato aspermy virus} SCOP: b.121.4.5
Probab=11.69 E-value=47 Score=25.69 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=8.1
Q ss_pred eecCCccccCCCcccccchhhHHHHHHHHhhhHHHHHHHHHhc
Q 034284 27 QARKGKRYVKPSKITKDMDVDRELTKFINHCNEVKAATLANKE 69 (99)
Q Consensus 27 k~RKGKr~~kP~k~tkd~~~~~elTK~IN~~NE~~aA~~A~k~ 69 (99)
.+|.|.|+-..+.......+=+.||.++|.-|-+.||++-+=+
T Consensus 12 rPRRG~R~s~~~~~~A~~~~lraLtqQl~Rl~~~~aa~~Ptl~ 54 (217)
T 1laj_A 12 RPRRGRRNNNNNNSTARDKALLALTQQVNRLANIASSSAPSLQ 54 (217)
T ss_dssp --------------------------------CHHHHHCCCCC
T ss_pred CCcCccccCcccccccchHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 4689998744444444435568899999999999999875433
No 3
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=10.80 E-value=2.2e+02 Score=18.40 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=18.2
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhcCCeeEEec
Q 034284 47 DRELTKFINHCNEVKAATLANKEGGQLSIVK 77 (99)
Q Consensus 47 ~~elTK~IN~~NE~~aA~~A~k~GGkL~IvK 77 (99)
-..|.+.|+.+.| ...+.||.|.+++
T Consensus 67 e~~L~~ai~~i~~-----~i~~~gG~~~v~R 92 (93)
T 2qn6_B 67 SEALNQIISNLIK-----IGKEENVDISVVK 92 (93)
T ss_dssp HHHHHHHHHHHHH-----HHHHTTEEEEECC
T ss_pred HHHHHHHHHHHHH-----HHHHhCCEEEEEE
Confidence 3445666666555 5678999999876
No 4
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=10.71 E-value=1.5e+02 Score=17.24 Aligned_cols=21 Identities=10% Similarity=0.017 Sum_probs=15.8
Q ss_pred HHHHHHhcCCeeEEecCCCcc
Q 034284 62 AATLANKEGGQLSIVKPPAES 82 (99)
Q Consensus 62 aA~~A~k~GGkL~IvK~p~e~ 82 (99)
+...+.+.|+.|.|+-+++..
T Consensus 68 ~~~~~~~~g~~l~l~~~~~~v 88 (110)
T 1sbo_A 68 ILKDAKINGKEFILSSLKESI 88 (110)
T ss_dssp HHHHHHHTTCEEEEESCCHHH
T ss_pred HHHHHHHcCCEEEEEeCCHHH
Confidence 455667789999998877654
No 5
>2z34_C Protein HIR1; histone chaperone, nucleosome disassmebly/assembly, chromatin regulation, chromatin regulator, coiled coil, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=10.62 E-value=97 Score=17.15 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=13.5
Q ss_pred CCccceecCCccccCCC
Q 034284 22 HGKIIQARKGKRYVKPS 38 (99)
Q Consensus 22 HGK~~k~RKGKr~~kP~ 38 (99)
+-++++++.||.-+.|.
T Consensus 6 ~q~VtitK~GKKRVaP~ 22 (29)
T 2z34_C 6 VQKVTITKEGKKRVAPQ 22 (29)
T ss_dssp CCCEEECTTSCEEECCE
T ss_pred cceEEEeeCCceeecce
Confidence 44677899999998884
No 6
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=10.44 E-value=98 Score=16.67 Aligned_cols=16 Identities=44% Similarity=0.719 Sum_probs=11.2
Q ss_pred CCeeEEecCCCccccc
Q 034284 70 GGQLSIVKPPAESSAT 85 (99)
Q Consensus 70 GGkL~IvK~p~e~~~~ 85 (99)
|-.-+||.||.++.++
T Consensus 2 gqrhsivqppapppna 17 (26)
T 2lkw_A 2 GQRHSIVQPPAPPPNA 17 (26)
T ss_pred CcccccccCCCcCCCe
Confidence 4456899988876553
No 7
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=10.02 E-value=1.5e+02 Score=18.58 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=16.2
Q ss_pred HHHHHHhcCCeeEEecCCCcc
Q 034284 62 AATLANKEGGQLSIVKPPAES 82 (99)
Q Consensus 62 aA~~A~k~GGkL~IvK~p~e~ 82 (99)
+...+.+.|+.|.|+-+++.+
T Consensus 76 ~~~~~~~~g~~l~l~~~~~~v 96 (125)
T 2ka5_A 76 ILKSISSSGGFFALVSPNEKV 96 (125)
T ss_dssp HHHHHHHHTCEEEEECCCHHH
T ss_pred HHHHHHHcCCEEEEEeCCHHH
Confidence 455677789999999887654
No 8
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=9.77 E-value=1.1e+02 Score=19.87 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=19.5
Q ss_pred ecCCccccCCC-----------cccccchhhHHHHHHH
Q 034284 28 ARKGKRYVKPS-----------KITKDMDVDRELTKFI 54 (99)
Q Consensus 28 ~RKGKr~~kP~-----------k~tkd~~~~~elTK~I 54 (99)
.+||+|-+.|. |.--+..+..|+++|.
T Consensus 22 ~~kG~R~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~Fa 59 (71)
T 2eo2_A 22 LVNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFA 59 (71)
T ss_dssp CSSSSCCCCHHHHHHHHHHTCCCCSTTTCCHHHHHHHH
T ss_pred CCCCeeecCHHHHHHHHHcCCCCCCcccCCHHHHhhce
Confidence 57899998887 2225667778888875
No 9
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=9.68 E-value=1.7e+02 Score=17.33 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=15.6
Q ss_pred HHHHHHhcCCeeEEecCCCcc
Q 034284 62 AATLANKEGGQLSIVKPPAES 82 (99)
Q Consensus 62 aA~~A~k~GGkL~IvK~p~e~ 82 (99)
+...+.+.|+.|.|+-+++.+
T Consensus 67 ~~~~~~~~g~~l~l~~~~~~v 87 (116)
T 1th8_B 67 RYKQIKNVGGQMVVCAVSPAV 87 (116)
T ss_dssp HHHHHHHTTCCEEEESCCHHH
T ss_pred HHHHHHHhCCeEEEEeCCHHH
Confidence 445667789999998877654
No 10
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=9.54 E-value=1.7e+02 Score=17.60 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=16.1
Q ss_pred HHHHHHhcCCeeEEecCCCcc
Q 034284 62 AATLANKEGGQLSIVKPPAES 82 (99)
Q Consensus 62 aA~~A~k~GGkL~IvK~p~e~ 82 (99)
+...+...||.|.|+-+++.+
T Consensus 66 ~~~~~~~~g~~l~l~~~~~~v 86 (117)
T 4hyl_A 66 LYRHTSNQQGALVLVGVSEEI 86 (117)
T ss_dssp HHHHHHHTTCEEEEECCCHHH
T ss_pred HHHHHHHcCCEEEEEeCCHHH
Confidence 455677889999999877654
Done!