Query 034284
Match_columns 99
No_of_seqs 22 out of 24
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 20:18:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034284.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034284hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1exea_ a.55.1.1 (A:) Transcri 35.5 22 0.0016 21.4 3.8 43 19-63 56-98 (99)
2 d1q8ka2 d.58.51.1 (A:186-302) 9.6 60 0.0044 20.6 1.5 32 49-85 64-95 (117)
3 d1vc1a_ c.13.2.1 (A:) Anti-sig 8.5 96 0.007 17.3 2.0 22 61-82 67-88 (110)
4 d1agja_ b.47.1.1 (A:) Epidermo 8.4 58 0.0042 20.6 1.1 14 46-59 229-242 (242)
5 d1x6fa1 g.37.1.1 (A:8-82) Zinc 8.1 85 0.0062 19.0 1.7 24 42-66 26-49 (75)
6 d2qn6b1 d.58.51.1 (B:176-264) 7.0 1.1E+02 0.008 18.2 1.8 24 48-76 66-89 (89)
7 d2azeb1 e.63.1.2 (B:201-301) T 6.8 91 0.0067 19.1 1.4 19 66-84 55-73 (101)
8 d1th8b_ c.13.2.1 (B:) Anti-sig 6.1 1.4E+02 0.01 16.6 1.9 21 62-82 66-86 (115)
9 d1v47a1 b.122.1.3 (A:4-135) AT 5.9 83 0.0061 19.8 0.8 12 69-80 121-132 (132)
10 d1r11a3 d.75.1.1 (A:3-60) Dime 5.5 96 0.007 17.8 0.9 12 70-81 1-12 (58)
No 1
>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]}
Probab=35.45 E-value=22 Score=21.35 Aligned_cols=43 Identities=12% Similarity=0.014 Sum_probs=33.1
Q ss_pred CCCCCccceecCCccccCCCcccccchhhHHHHHHHHhhhHHHHH
Q 034284 19 PNRHGKIIQARKGKRYVKPSKITKDMDVDRELTKFINHCNEVKAA 63 (99)
Q Consensus 19 aNRHGK~~k~RKGKr~~kP~k~tkd~~~~~elTK~IN~~NE~~aA 63 (99)
+-|-|+-| +-|....-|.+..=.+..+++|-..||.-++..+|
T Consensus 56 ~~r~grNP--~Tge~i~ip~~~~v~Fk~sk~LK~~vn~~~~~~~a 98 (99)
T d1exea_ 56 QARKGFNP--QTQEALEIAPSVGVSVKPGESLKKAAEGLKYEDFA 98 (99)
T ss_dssp CCCCCCCS--SSSSCCCCCCCCCCCCCCCHHHHHHHHHHTHHHHH
T ss_pred cccccCCc--CCCCEEEecCcccEEEecCHHHHHHHcCCchhhhc
Confidence 33445544 44777777888887889999999999999988876
No 2
>d1q8ka2 d.58.51.1 (A:186-302) eIF-2-alpha, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.55 E-value=60 Score=20.55 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=21.8
Q ss_pred HHHHHHHhhhHHHHHHHHHhcCCeeEEecCCCccccc
Q 034284 49 ELTKFINHCNEVKAATLANKEGGQLSIVKPPAESSAT 85 (99)
Q Consensus 49 elTK~IN~~NE~~aA~~A~k~GGkL~IvK~p~e~~~~ 85 (99)
.|.+.|+..-| ...+.||.|.|..+|--++..
T Consensus 64 ~l~~a~~~i~~-----~I~~~gG~f~ik~~pk~v~~~ 95 (117)
T d1q8ka2 64 VLSQAMAVIKE-----KIEEKRGVFNVQMEPKVVTDT 95 (117)
T ss_dssp HHHHHHHHHHH-----HHHTTSCEECCSSCCEECCSS
T ss_pred HHHHHHHHHHH-----HHHHcCCEEEEEECCEEeccc
Confidence 45555554433 467789999999998766643
No 3
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=8.51 E-value=96 Score=17.27 Aligned_cols=22 Identities=9% Similarity=-0.009 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCeeEEecCCCcc
Q 034284 61 KAATLANKEGGQLSIVKPPAES 82 (99)
Q Consensus 61 ~aA~~A~k~GGkL~IvK~p~e~ 82 (99)
.+...+.+.|+.|.|+-++++.
T Consensus 67 ~~~~~~~~~~~~l~l~~~~~~v 88 (110)
T d1vc1a_ 67 VILKDAKINGKEFILSSLKESI 88 (110)
T ss_dssp HHHHHHHHTTCEEEEESCCHHH
T ss_pred HHHHHHHhCCCEEEEEeCCHHH
Confidence 3566778899999998887654
No 4
>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}
Probab=8.40 E-value=58 Score=20.65 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=11.5
Q ss_pred hhHHHHHHHHhhhH
Q 034284 46 VDRELTKFINHCNE 59 (99)
Q Consensus 46 ~~~elTK~IN~~NE 59 (99)
.+..|.++||..||
T Consensus 229 i~~~i~~~i~~~ne 242 (242)
T d1agja_ 229 IGNYVKRIINEKNE 242 (242)
T ss_dssp CCHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHccC
Confidence 45778899999988
No 5
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.10 E-value=85 Score=19.03 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=17.9
Q ss_pred ccchhhHHHHHHHHhhhHHHHHHHH
Q 034284 42 KDMDVDRELTKFINHCNEVKAATLA 66 (99)
Q Consensus 42 kd~~~~~elTK~IN~~NE~~aA~~A 66 (99)
..+..-.|||+-||.-||. +-.+|
T Consensus 26 ~K~~s~~el~~hl~~hnee-fqkra 49 (75)
T d1x6fa1 26 SKLQSTAELTSHLNIHNEE-FQKRA 49 (75)
T ss_dssp CEESSHHHHHHHHHHHHHH-HHHHC
T ss_pred HHHhhHHHHHHHHHhccHH-HHHHH
Confidence 4556778999999999995 33444
No 6
>d2qn6b1 d.58.51.1 (B:176-264) eIF-2-alpha, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.97 E-value=1.1e+02 Score=18.16 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHhcCCeeEEe
Q 034284 48 RELTKFINHCNEVKAATLANKEGGQLSIV 76 (99)
Q Consensus 48 ~elTK~IN~~NE~~aA~~A~k~GGkL~Iv 76 (99)
..|.+.++.+-| .+.+.||.|+||
T Consensus 66 ~~l~~a~~~i~~-----~ik~~gg~~~vv 89 (89)
T d2qn6b1 66 EALNQIISNLIK-----IGKEENVDISVV 89 (89)
T ss_dssp HHHHHHHHHHHH-----HHHHTTEEEEEC
T ss_pred HHHHHHHHHHHH-----HHHHhCCEEEeC
Confidence 345555554433 678999999986
No 7
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.84 E-value=91 Score=19.09 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=14.6
Q ss_pred HHhcCCeeEEecCCCcccc
Q 034284 66 ANKEGGQLSIVKPPAESSA 84 (99)
Q Consensus 66 A~k~GGkL~IvK~p~e~~~ 84 (99)
++=.+-.+-+||+|+++.-
T Consensus 55 ~~f~~~tviaIkAP~gT~L 73 (101)
T d2azeb1 55 ADPAEQMVMVIKAPPETQL 73 (101)
T ss_dssp SCTTTEEEEEEECCTTCEE
T ss_pred CCcccceEEEEECCCCCEE
Confidence 4455678899999999754
No 8
>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.12 E-value=1.4e+02 Score=16.57 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=15.5
Q ss_pred HHHHHHhcCCeeEEecCCCcc
Q 034284 62 AATLANKEGGQLSIVKPPAES 82 (99)
Q Consensus 62 aA~~A~k~GGkL~IvK~p~e~ 82 (99)
+...+...|+.|.|+-++++.
T Consensus 66 ~~~~~~~~g~~l~l~~~~~~v 86 (115)
T d1th8b_ 66 RYKQIKNVGGQMVVCAVSPAV 86 (115)
T ss_dssp HHHHHHHTTCCEEEESCCHHH
T ss_pred HHHHHHhCCCEEEEEECCHHH
Confidence 344566789999999887654
No 9
>d1v47a1 b.122.1.3 (A:4-135) ATP sulfurylase N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=5.85 E-value=83 Score=19.80 Aligned_cols=12 Identities=25% Similarity=0.637 Sum_probs=10.2
Q ss_pred cCCeeEEecCCC
Q 034284 69 EGGQLSIVKPPA 80 (99)
Q Consensus 69 ~GGkL~IvK~p~ 80 (99)
-||++.++.+||
T Consensus 121 vgG~i~~l~~~p 132 (132)
T d1v47a1 121 LAGRVEVLKPRP 132 (132)
T ss_dssp EEBCEEESSCCC
T ss_pred EeCeEEEecCCC
Confidence 689999998876
No 10
>d1r11a3 d.75.1.1 (A:3-60) Dimeric tRNA splicing endonuclease, domains 1 and 3 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=5.53 E-value=96 Score=17.81 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=9.3
Q ss_pred CCeeEEecCCCc
Q 034284 70 GGQLSIVKPPAE 81 (99)
Q Consensus 70 GGkL~IvK~p~e 81 (99)
||.|.|||+--.
T Consensus 1 ggdfavvkakks 12 (58)
T d1r11a3 1 GGDFAVVKAKKS 12 (58)
T ss_dssp CCSSEEEECCHH
T ss_pred CCceEEEEhhhh
Confidence 789999987543
Done!