BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034287
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HP1|A Chain A, Crystal Structure Of Human Dck R104mD133A IN COMPLEX WITH
L-Dt And Adp
Length = 280
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 2 GNLSLGK-----ILDCLCISS---PGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKD 53
GN++ GK IL LC P + +C N QDEFE+ + + +GG +L++
Sbjct: 48 GNIAAGKSTFVNILKQLCEDWEVVPEPVARWC-NVQSTQDEFEELTMSQKNGGNVLQMMY 106
Query: 54 VVSGNQTLAFQ 64
+ FQ
Sbjct: 107 EKPERWSFTFQ 117
>pdb|3IPX|A Chain A, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With Adp And An Inhibitor
pdb|3IPY|A Chain A, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With An Inhibitor
pdb|3IPY|B Chain B, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With An Inhibitor
Length = 241
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 2 GNLSLGK-----ILDCLCISS---PGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKD 53
GN++ GK IL LC P + +C N QDEFE+ + + +GG +L++
Sbjct: 9 GNIAAGKSTFVNILKQLCEDWEVVPEPVARWC-NVQSTQDEFEELTMSQKNGGNVLQMMY 67
Query: 54 VVSGNQTLAFQ 64
+ FQ
Sbjct: 68 EKPERWSFTFQ 78
>pdb|2QRN|A Chain A, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|B Chain B, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|C Chain C, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|D Chain D, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRO|A Chain A, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|B Chain B, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|C Chain C, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|D Chain D, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
Length = 280
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 2 GNLSLGK-----ILDCLCISS---PGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKD 53
GN++ GK IL LC P + +C N QDEFE+ + + +GG +L++
Sbjct: 48 GNIAAGKSTFVNILKQLCEDWEVVPEPVARWC-NVQSTQDEFEELTMSQKNGGNVLQMMY 106
Query: 54 VVSGNQTLAFQ 64
+ FQ
Sbjct: 107 EKPERWSFTFQ 117
>pdb|1P5Z|B Chain B, Structure Of Human Dck Complexed With Cytarabine And
Adp-Mg
pdb|1P60|A Chain A, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, Space Group C 2 2 21
pdb|1P60|B Chain B, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, Space Group C 2 2 21
pdb|1P61|B Chain B, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, P 43 21 2 Space Group
pdb|1P62|B Chain B, Structure Of Human Dck Complexed With Gemcitabine And
Adp-Mg
pdb|2A7Q|A Chain A, Crystal Structure Of Human Dck Complexed With Clofarabine
And Adp
Length = 263
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 2 GNLSLGK-----ILDCLCISS---PGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKD 53
GN++ GK IL LC P + +C N QDEFE+ + + +GG +L++
Sbjct: 31 GNIAAGKSTFVNILKQLCEDWEVVPEPVARWC-NVQSTQDEFEELTMSQKNGGNVLQMMY 89
Query: 54 VVSGNQTLAFQ 64
+ FQ
Sbjct: 90 EKPERWSFTFQ 100
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 55 VSGNQT-LAFQLKPKMVVVIGDIIPFEVLESVSKVKNAELWSASCY 99
GNQ + + + + VV G PF L+ VSKVK LW +
Sbjct: 196 TGGNQRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNLWEGKTH 241
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 55 VSGNQT-LAFQLKPKMVVVIGDIIPFEVLESVSKVKNAELWSASCY 99
GNQ + + + + VV G PF L+ VSKVK LW +
Sbjct: 196 TGGNQRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNLWEGKTH 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,876,273
Number of Sequences: 62578
Number of extensions: 98903
Number of successful extensions: 233
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 19
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)