BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034287
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FQ09|KU80_ARATH ATP-dependent DNA helicase 2 subunit KU80 OS=Arabidopsis thaliana
GN=KU80 PE=1 SV=1
Length = 680
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 26 LNTFEGQDEFEKKPLMKSDGGQLLRLKDVVS---GNQTLAFQLKPKMVVVIGDIIPFEVL 82
++TF G E ++ P +K +LLR K S N+ + + K + ++GD P +
Sbjct: 504 MDTFRGSFEVKENPKLKKASKRLLRDKPSGSDDEDNRMITYDAKENKIDIVGDANPIQDF 563
Query: 83 ESVSKVKNAELWS 95
E++ ++ W+
Sbjct: 564 EAMISRRDKTDWT 576
>sp|Q6AJ53|MURG_DESPS UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Desulfotalea psychrophila (strain LSv54 /
DSM 12343) GN=murG PE=3 SV=1
Length = 369
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 1 MGNLSLGKILDCLCISSPGSCSCF 24
+ N L K++D +C+S P S SCF
Sbjct: 135 LANRKLAKLVDRVCVSLPASASCF 158
>sp|Q63AF7|RPIA_BACCZ Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ZK /
E33L) GN=rpiA PE=3 SV=1
Length = 220
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 28 TFEGQDEFEKK-PLMKSDGGQLLRLKDVVSGNQTLAFQL-KPKMVVVIG------DIIPF 79
T +G DE + L+K GG LLR K V S ++ L + + K+V +G +IIPF
Sbjct: 78 TIDGADEIDSNLQLIKGGGGALLREKIVASSSKELIIIIDESKVVTRLGTFPLPIEIIPF 137
Query: 80 EVLESVSKVKN 90
++ SK+++
Sbjct: 138 AWKQTESKIQS 148
>sp|Q736S8|RPIA_BACC1 Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC
10987) GN=rpiA PE=3 SV=1
Length = 220
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 28 TFEGQDEFEKK-PLMKSDGGQLLRLKDVVSGN-QTLAFQLKPKMVVVIG------DIIPF 79
T +G DE + L+K GG LLR K V S + + L + K+V +G +IIPF
Sbjct: 78 TIDGADEIDSNLHLIKGGGGALLREKIVASSSKELLIIADESKLVTHLGTFPLPVEIIPF 137
Query: 80 EVLESVSKVK 89
++ SK++
Sbjct: 138 SWKQTESKIQ 147
>sp|Q81PL1|RPIA_BACAN Ribose-5-phosphate isomerase A OS=Bacillus anthracis GN=rpiA PE=3
SV=1
Length = 220
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 28 TFEGQDEFEKK-PLMKSDGGQLLRLKDVVSGNQTLAFQL-KPKMVVVIG------DIIPF 79
T +G DE + L+K GG LLR K V S ++ L + + K+V +G +IIPF
Sbjct: 78 TIDGADEIDSNLQLIKGGGGALLREKIVASSSKELIIIVDESKVVTRLGTFPLPIEIIPF 137
Query: 80 EVLESVSKVKN 90
++ SK+++
Sbjct: 138 AWKQTESKIQS 148
>sp|Q6HHU6|RPIA_BACHK Ribose-5-phosphate isomerase A OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=rpiA PE=3 SV=1
Length = 220
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 28 TFEGQDEFEKK-PLMKSDGGQLLRLKDVVSGNQTLAFQL-KPKMVVVIG------DIIPF 79
T +G DE + L+K GG LLR K V S ++ L + + K+V +G +IIPF
Sbjct: 78 TIDGADEIDSNLQLIKGGGGALLREKIVASSSKELIIIVDESKVVTRLGTFPLPIEIIPF 137
Query: 80 EVLESVSKVKN 90
++ SK+++
Sbjct: 138 AWKQTESKIQS 148
>sp|Q81CG8|RPIA_BACCR Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC
14579 / DSM 31) GN=rpiA PE=3 SV=1
Length = 220
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 28 TFEGQDEFEKK-PLMKSDGGQLLRLKDVVSGNQTLAFQL-KPKMVVVIG------DIIPF 79
T +G DE + L+K GG LLR K V S ++ L + K+V +G +IIPF
Sbjct: 78 TIDGADEIDSNLQLIKGGGGALLREKIVASSSKKLIIIADESKLVTHLGTFPLPIEIIPF 137
Query: 80 EVLESVSKVK 89
++ +K++
Sbjct: 138 SWKQTENKIQ 147
>sp|Q7TT37|ELP1_MOUSE Elongator complex protein 1 OS=Mus musculus GN=Ikbkap PE=2 SV=2
Length = 1333
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 1 MGNLSLGKILDCLCISSPGSCSCFCLNTFEG 31
M NL L + L+ I +PG CFCL +G
Sbjct: 1 MRNLKLHRTLEFRDIQAPGKPQCFCLRAEQG 31
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,438,932
Number of Sequences: 539616
Number of extensions: 1284395
Number of successful extensions: 3340
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3336
Number of HSP's gapped (non-prelim): 14
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)