BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034288
         (99 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J03|A Chain A, Solution Structure Of A Putative Steroid-Binding Protein
           From Arabidopsis
          Length = 102

 Score =  171 bits (434), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 89/99 (89%)

Query: 1   MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMS 60
           MEFT  QL QYNGTD SKPIYVAIKGRVFDVTTGKSFYG GG Y+MFAGKDASRAL KMS
Sbjct: 3   MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMS 62

Query: 61  KNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 99
           KN++DV+PSL+GLTEKE+  L+DWE KFEAKYPVVGRVV
Sbjct: 63  KNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 101


>pdb|1T0G|A Chain A, Hypothetical Protein At2g24940.1 From Arabidopsis Thaliana
           Has A Cytochrome B5 Like Fold
          Length = 109

 Score =  170 bits (431), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/98 (82%), Positives = 88/98 (89%)

Query: 2   EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSK 61
           EFT  QL QYNGTD SKPIYVAIKGRVFDVTTGKSFYG GG Y+MFAGKDASRAL KMSK
Sbjct: 11  EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSK 70

Query: 62  NDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 99
           N++DV+PSL+GLTEKE+  L+DWE KFEAKYPVVGRVV
Sbjct: 71  NEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 108


>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
 pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
          Length = 92

 Score = 30.0 bits (66), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 18 KPIYVAIKGRVFDVTTGKSFYGPGGAYAMF--AGKDASRALAKMSKNDD 64
          K +++ I GRV+DVT   + + PGG   +   AG DAS +   +  + D
Sbjct: 24 KELWLVIHGRVYDVTRFLNEH-PGGEEVLLEQAGVDASESFEDVGHSSD 71


>pdb|3UNB|E Chain E, Mouse Constitutive 20s Proteasome In Complex With Pr-957
 pdb|3UNB|S Chain S, Mouse Constitutive 20s Proteasome In Complex With Pr-957
 pdb|3UNB|GG Chain g, Mouse Constitutive 20s Proteasome In Complex With Pr-957
 pdb|3UNB|UU Chain u, Mouse Constitutive 20s Proteasome In Complex With Pr-957
 pdb|3UNE|E Chain E, Mouse Constitutive 20s Proteasome
 pdb|3UNE|S Chain S, Mouse Constitutive 20s Proteasome
 pdb|3UNE|GG Chain g, Mouse Constitutive 20s Proteasome
 pdb|3UNE|UU Chain u, Mouse Constitutive 20s Proteasome
 pdb|3UNF|E Chain E, Mouse 20s Immunoproteasome In Complex With Pr-957
 pdb|3UNF|S Chain S, Mouse 20s Immunoproteasome In Complex With Pr-957
 pdb|3UNH|E Chain E, Mouse 20s Immunoproteasome
 pdb|3UNH|S Chain S, Mouse 20s Immunoproteasome
          Length = 263

 Score = 26.2 bits (56), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 10/15 (66%), Positives = 13/15 (86%)

Query: 62  NDDDVTPSLDGLTEK 76
           +DDDV+P LDGL E+
Sbjct: 225 DDDDVSPFLDGLEER 239


>pdb|3BB5|A Chain A, Crystal Structure Of A Dimeric Ferredoxin-Like Protein
          Of Unknown Function (Jann_3925) From Jannaschia Sp.
          Ccs1 At 2.30 A Resolution
 pdb|3BB5|B Chain B, Crystal Structure Of A Dimeric Ferredoxin-Like Protein
          Of Unknown Function (Jann_3925) From Jannaschia Sp.
          Ccs1 At 2.30 A Resolution
 pdb|3BB5|C Chain C, Crystal Structure Of A Dimeric Ferredoxin-Like Protein
          Of Unknown Function (Jann_3925) From Jannaschia Sp.
          Ccs1 At 2.30 A Resolution
 pdb|3BB5|D Chain D, Crystal Structure Of A Dimeric Ferredoxin-Like Protein
          Of Unknown Function (Jann_3925) From Jannaschia Sp.
          Ccs1 At 2.30 A Resolution
 pdb|3BB5|E Chain E, Crystal Structure Of A Dimeric Ferredoxin-Like Protein
          Of Unknown Function (Jann_3925) From Jannaschia Sp.
          Ccs1 At 2.30 A Resolution
 pdb|3BB5|F Chain F, Crystal Structure Of A Dimeric Ferredoxin-Like Protein
          Of Unknown Function (Jann_3925) From Jannaschia Sp.
          Ccs1 At 2.30 A Resolution
          Length = 121

 Score = 26.2 bits (56), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 64 DDVTPSLDGLTEKEMGVLSDWEKKFEAKYP 93
          D + P L GLTE   G   D+E+K E +YP
Sbjct: 46 DGLAPELPGLTEFRHGPNRDFEQKSE-RYP 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.134    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,416,317
Number of Sequences: 62578
Number of extensions: 137170
Number of successful extensions: 314
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 11
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)