Query 034288
Match_columns 99
No_of_seqs 163 out of 1083
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 11:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1110 Putative steroid membr 100.0 6.1E-42 1.3E-46 246.5 9.7 99 1-99 56-154 (183)
2 KOG1108 Predicted heme/steroid 100.0 7.2E-32 1.6E-36 201.4 7.3 98 2-99 61-158 (281)
3 PF00173 Cyt-b5: Cytochrome b5 99.8 1.6E-19 3.6E-24 111.9 5.7 73 2-98 1-75 (76)
4 COG4892 Predicted heme/steroid 99.8 9.3E-19 2E-23 110.1 5.7 73 1-99 2-76 (81)
5 KOG0537 Cytochrome b5 [Energy 99.6 1.8E-16 3.9E-21 108.9 3.7 59 1-63 5-65 (124)
6 KOG0536 Flavohemoprotein b5+b5 99.6 2.4E-15 5.2E-20 104.6 4.6 53 2-58 69-123 (145)
7 COG5274 CYB5 Cytochrome b invo 99.3 4.7E-12 1E-16 90.6 5.2 59 2-64 51-111 (164)
8 PLN03198 delta6-acyl-lipid des 99.2 1.4E-11 3E-16 101.2 3.9 55 1-59 104-159 (526)
9 PLN03199 delta6-acyl-lipid des 99.2 2.6E-11 5.6E-16 98.5 4.8 54 1-59 24-78 (485)
10 PLN02252 nitrate reductase [NA 99.1 1E-10 2.2E-15 100.9 3.5 55 1-59 518-574 (888)
11 KOG4232 Delta 6-fatty acid des 98.8 2.1E-09 4.6E-14 86.3 1.1 58 1-63 8-67 (430)
12 KOG4576 Sulfite oxidase, heme- 97.8 8.2E-06 1.8E-10 57.6 1.9 52 2-56 81-132 (167)
13 PF14901 Jiv90: Cleavage induc 83.3 0.83 1.8E-05 30.2 1.7 14 20-33 57-70 (94)
14 PF12596 Tnp_P_element_C: 87kD 71.4 3.3 7.2E-05 27.9 2.0 28 71-98 72-100 (106)
15 PRK06549 acetyl-CoA carboxylas 66.6 4.6 9.9E-05 27.9 1.9 14 20-33 5-18 (130)
16 cd06583 PGRP Peptidoglycan rec 54.3 22 0.00048 22.7 3.5 65 18-94 38-104 (126)
17 PRK08053 sulfur carrier protei 52.0 30 0.00066 20.4 3.6 29 3-32 16-44 (66)
18 cd00565 ThiS ThiaminS ubiquiti 51.0 29 0.00063 20.3 3.4 30 3-33 15-44 (65)
19 PF10618 Tail_tube: Phage tail 47.9 25 0.00055 23.7 3.1 60 19-79 8-70 (119)
20 TIGR01683 thiS thiamine biosyn 47.2 36 0.00079 19.9 3.4 27 3-30 14-40 (64)
21 PRK07696 sulfur carrier protei 46.5 35 0.00075 20.4 3.2 30 3-33 17-46 (67)
22 TIGR03164 UHCUDC OHCU decarbox 45.6 24 0.00052 24.9 2.8 26 69-94 84-109 (157)
23 PRK05659 sulfur carrier protei 45.0 42 0.00091 19.5 3.4 30 3-33 16-45 (66)
24 TIGR03180 UraD_2 OHCU decarbox 44.8 25 0.00054 24.8 2.8 26 69-94 84-109 (158)
25 PRK13798 putative OHCU decarbo 44.8 25 0.00054 25.0 2.8 26 69-94 89-114 (166)
26 PF05989 Chordopox_A35R: Chord 44.2 31 0.00067 25.2 3.2 29 3-35 49-77 (176)
27 KOG0720 Molecular chaperone (D 44.1 14 0.00031 30.8 1.6 15 19-33 378-392 (490)
28 PRK11789 N-acetyl-anhydromuran 44.0 31 0.00068 25.1 3.2 70 21-95 79-149 (185)
29 PRK06488 sulfur carrier protei 42.5 44 0.00095 19.5 3.2 30 3-33 15-44 (65)
30 PRK06437 hypothetical protein; 42.4 46 0.00099 19.9 3.3 27 3-30 21-47 (67)
31 PF06299 DUF1045: Protein of u 42.3 20 0.00044 25.7 2.0 45 44-95 56-103 (160)
32 COG2104 ThiS Sulfur transfer p 41.9 43 0.00093 20.5 3.2 30 3-33 18-47 (68)
33 PHA02983 hypothetical protein; 39.7 37 0.00081 24.9 3.0 28 3-34 50-77 (180)
34 PRK07440 hypothetical protein; 39.2 64 0.0014 19.5 3.7 30 3-33 20-49 (70)
35 PHA02310 hypothetical protein 36.3 36 0.00078 23.7 2.4 22 21-42 90-111 (130)
36 PRK06083 sulfur carrier protei 35.9 72 0.0016 20.2 3.6 30 3-33 34-63 (84)
37 PF05603 DUF775: Protein of un 35.0 20 0.00043 26.3 1.0 16 78-93 181-196 (202)
38 PF02515 CoA_transf_3: CoA-tra 31.5 61 0.0013 23.0 3.1 40 3-57 38-77 (191)
39 PF07901 DUF1672: Protein of u 30.6 42 0.0009 26.2 2.2 24 74-97 121-144 (277)
40 PRK05641 putative acetyl-CoA c 30.1 53 0.0012 23.1 2.5 15 19-33 24-38 (153)
41 smart00674 CENPB Putative DNA- 30.0 33 0.00072 19.8 1.2 16 80-95 48-63 (66)
42 PF00034 Cytochrom_C: Cytochro 29.7 48 0.001 19.0 2.0 17 72-88 74-90 (91)
43 PF02065 Melibiase: Melibiase; 29.4 43 0.00093 27.0 2.2 31 60-90 304-334 (394)
44 PF09349 OHCU_decarbox: OHCU d 29.3 32 0.0007 24.0 1.3 26 68-93 86-111 (159)
45 PRK13719 conjugal transfer tra 29.0 71 0.0015 24.0 3.1 74 3-82 73-153 (217)
46 PRK11430 putative CoA-transfer 28.6 83 0.0018 25.0 3.6 37 3-54 111-147 (381)
47 PHA02671 hypothetical protein; 27.2 78 0.0017 23.2 3.0 27 3-34 50-76 (179)
48 PRK05863 sulfur carrier protei 26.5 1E+02 0.0023 18.0 3.0 30 3-33 16-45 (65)
49 PF14201 DUF4318: Domain of un 26.5 1.3E+02 0.0027 18.9 3.5 28 6-33 22-57 (74)
50 COG3195 Uncharacterized protei 26.2 52 0.0011 24.0 1.9 49 47-95 75-125 (176)
51 PF05521 Phage_H_T_join: Phage 26.1 92 0.002 18.5 2.8 16 18-33 65-80 (95)
52 PRK05398 formyl-coenzyme A tra 26.0 80 0.0017 25.4 3.1 36 3-53 107-142 (416)
53 TIGR03223 Phn_opern_protn puta 25.2 54 0.0012 24.8 1.9 39 51-95 122-163 (228)
54 PF05506 DUF756: Domain of unk 24.5 52 0.0011 20.4 1.5 22 25-50 68-89 (89)
55 KOG0006 E3 ubiquitin-protein l 24.4 5.2 0.00011 32.3 -3.8 72 8-86 4-80 (446)
56 PRK13797 putative bifunctional 23.9 78 0.0017 26.7 2.8 27 68-94 438-464 (516)
57 PF01920 Prefoldin_2: Prefoldi 23.8 66 0.0014 20.1 1.9 23 3-29 33-55 (106)
58 PF09597 IGR: IGR protein moti 23.4 97 0.0021 18.4 2.4 43 48-90 8-56 (57)
59 COG1804 CaiB Predicted acyl-Co 23.1 1.2E+02 0.0025 24.7 3.6 38 3-55 108-145 (396)
60 cd00412 pyrophosphatase Inorga 22.7 62 0.0013 22.9 1.7 23 68-90 106-128 (155)
61 PF09733 VEFS-Box: VEFS-Box of 22.3 88 0.0019 21.7 2.4 27 69-96 60-86 (140)
62 PRK08364 sulfur carrier protei 22.1 1.6E+02 0.0036 17.4 3.4 26 3-29 24-49 (70)
63 PRK13619 psbV cytochrome c-550 21.9 1.2E+02 0.0026 21.9 3.0 20 67-86 126-145 (160)
64 PF09568 RE_MjaI: MjaI restric 21.7 57 0.0012 23.7 1.4 15 79-93 32-46 (170)
65 PF05132 RNA_pol_Rpc4: RNA pol 20.4 1.2E+02 0.0027 20.3 2.8 19 17-35 77-95 (131)
66 KOG0173 20S proteasome, regula 20.3 3.2E+02 0.007 21.3 5.3 62 6-81 122-191 (271)
67 PF10339 Vel1p: Yeast-specific 20.2 54 0.0012 24.1 1.0 60 29-98 19-82 (203)
No 1
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=100.00 E-value=6.1e-42 Score=246.47 Aligned_cols=99 Identities=60% Similarity=1.045 Sum_probs=96.7
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccccccccCchHHHHhhcCCCCCCCCCCCCCCCHHHHhh
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGV 80 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~~~aG~DaT~~f~~~~~~~~~~~~~~~~L~~~e~~~ 80 (99)
|.||.+||++|||.++++||++||||+|||||+|+.||||||+|..||||||||++++||++..++.+|++||+..|+++
T Consensus 56 ~dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY~~fAG~DASR~La~~s~d~~d~~ddlsdL~a~e~ea 135 (183)
T KOG1110|consen 56 RDFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGPYSLFAGKDASRGLAKMSFDLSDETDDLSDLTAEELEA 135 (183)
T ss_pred cccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCCchhhcccchHHHHHhcccchhhccccccccCHHHHHH
Confidence 46999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceEeC
Q 034288 81 LSDWEKKFEAKYPVVGRVV 99 (99)
Q Consensus 81 l~~W~~~~~~kY~~VG~lv 99 (99)
|++|+++|+.|||+||+|+
T Consensus 136 l~eWE~~fk~KY~~VG~L~ 154 (183)
T KOG1110|consen 136 LNEWETKFKAKYPVVGRLV 154 (183)
T ss_pred HHHHHHHHhhcCceeEEee
Confidence 9999999999999999996
No 2
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=99.97 E-value=7.2e-32 Score=201.36 Aligned_cols=98 Identities=42% Similarity=0.790 Sum_probs=95.8
Q ss_pred CCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccccccccCchHHHHhhcCCCCCCCCCCCCCCCHHHHhhH
Q 034288 2 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVL 81 (99)
Q Consensus 2 ~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~~~aG~DaT~~f~~~~~~~~~~~~~~~~L~~~e~~~l 81 (99)
.||+|||+.|||.++++|||+||.|.|||||++..|||||++|++|||||||+||.++.+.+..+.+|+.+|+.+|+..|
T Consensus 61 lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk~hYgsG~sYnhFaGRDASrAFvsGdf~e~gl~d~v~gLs~dEllsi 140 (281)
T KOG1108|consen 61 LFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGKKHYGSGCSYNHFAGRDASRAFVSGDFEEPGLADDVLGLSPDELLSI 140 (281)
T ss_pred eeCHHHHhhccCCCCCCceeeeeeceeeeccCCeeeeCCCCCcccccccccchheecccCCCCcchhhhccCCHHHHhhh
Confidence 69999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCcceEeC
Q 034288 82 SDWEKKFEAKYPVVGRVV 99 (99)
Q Consensus 82 ~~W~~~~~~kY~~VG~lv 99 (99)
..|..||.+.|+.||+||
T Consensus 141 ~dWrsFY~k~Y~~vGrv~ 158 (281)
T KOG1108|consen 141 ADWRSFYQKDYVYVGRVI 158 (281)
T ss_pred hhhhhhhhcccceeeEEe
Confidence 999999999999999986
No 3
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.79 E-value=1.6e-19 Score=111.87 Aligned_cols=73 Identities=36% Similarity=0.492 Sum_probs=62.4
Q ss_pred CCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCc--cccccccCchHHHHhhcCCCCCCCCCCCCCCCHHHHh
Q 034288 2 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGG--AYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMG 79 (99)
Q Consensus 2 ~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg--~y~~~aG~DaT~~f~~~~~~~~~~~~~~~~L~~~e~~ 79 (99)
.||++||++||. +.++||+|+|+|||||+ +...|||| .+..+||+|+|.+| +..
T Consensus 1 ~~t~~el~~h~~---~~~~~v~i~g~VYDvt~-~~~~hpgg~~~~~~~aG~D~T~~f--------------------~~~ 56 (76)
T PF00173_consen 1 VYTWEELAKHNK---KGDCWVIIDGKVYDVTD-FLDRHPGGADILKKYAGRDATDAF--------------------EEA 56 (76)
T ss_dssp EEEHHHHTTTEE---TTEEEEEETTEEEECTT-TTTTSTTTSHHHHTTTTSBTHHHH--------------------HHH
T ss_pred CCCHHHHhhhCC---CCCEEEEECCEEccccc-ccccccchhHHHHHhccccccHHH--------------------hhc
Confidence 389999999994 45899999999999998 77789999 57789999999999 224
Q ss_pred hHHHHHHHHhccCCcceEe
Q 034288 80 VLSDWEKKFEAKYPVVGRV 98 (99)
Q Consensus 80 ~l~~W~~~~~~kY~~VG~l 98 (99)
....|...+..+|.+||+|
T Consensus 57 ~h~~~~~~~l~~~~~vG~l 75 (76)
T PF00173_consen 57 FHSWWAEKCLEKYYKVGYL 75 (76)
T ss_dssp THHHHHHHHHHGCGEEEEE
T ss_pred cCcHHHHHHccCCCEEEEe
Confidence 4557888888889999997
No 4
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=99.76 E-value=9.3e-19 Score=110.14 Aligned_cols=73 Identities=36% Similarity=0.663 Sum_probs=60.6
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCcccccc-ccCchHHHHh-hcCCCCCCCCCCCCCCCHHHH
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMF-AGKDASRALA-KMSKNDDDVTPSLDGLTEKEM 78 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~~~-aG~DaT~~f~-~~~~~~~~~~~~~~~L~~~e~ 78 (99)
|.||+|||++|||++ .|+|||++|+|||||-+ -.|+-|-+.... ||+|.|.+|. ..+|.++
T Consensus 2 refTLEELs~ynG~n--GpaYiA~~G~VYDvS~s-~~W~dGtHqglhsaG~DLs~~~~~~aphg~e-------------- 64 (81)
T COG4892 2 REFTLEELSKYNGEN--GPAYIAVNGTVYDVSLS-PSWGDGTHQGLHSAGKDLSSEFNSCAPHGME-------------- 64 (81)
T ss_pred ceecHHHHHhhcCCC--CCeEEEECCEEEeeccC-cccCCCccccccccchhHHHHHhhcCCchhH--------------
Confidence 689999999999987 49999999999999974 458877777754 9999999998 5666653
Q ss_pred hhHHHHHHHHhccCCcceEeC
Q 034288 79 GVLSDWEKKFEAKYPVVGRVV 99 (99)
Q Consensus 79 ~~l~~W~~~~~~kY~~VG~lv 99 (99)
.| +.||+||.|+
T Consensus 65 -il--------~~~PvVG~L~ 76 (81)
T COG4892 65 -IL--------TSLPVVGALI 76 (81)
T ss_pred -HH--------hcCchhheee
Confidence 33 5799999875
No 5
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.63 E-value=1.8e-16 Score=108.88 Aligned_cols=59 Identities=32% Similarity=0.509 Sum_probs=51.9
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCcc--ccccccCchHHHHhhcCCCC
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGA--YAMFAGKDASRALAKMSKND 63 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~--y~~~aG~DaT~~f~~~~~~~ 63 (99)
|.||++|+++||..+ +|||+|+|+|||||+ +..-||||. ...+||+|||++|....|+.
T Consensus 5 k~~~~~EV~kHn~~~---d~Wvii~gkVYDvT~-Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~ 65 (124)
T KOG0537|consen 5 KYYTLSEVAKHNKKD---DCWVIIHGKVYDVTS-FLDEHPGGEDVLLEYAGKDATEAFEDVGHSK 65 (124)
T ss_pred ccccHHHHHhhcCCC---CeEEEECCEEEeccc-hhhhCCChHHHHHHHhchhhHHhccccCCcH
Confidence 569999999999865 899999999999998 666799997 44699999999999887764
No 6
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.57 E-value=2.4e-15 Score=104.64 Aligned_cols=53 Identities=34% Similarity=0.580 Sum_probs=47.9
Q ss_pred CCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCcccc--ccccCchHHHHhh
Q 034288 2 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYA--MFAGKDASRALAK 58 (99)
Q Consensus 2 ~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~--~~aG~DaT~~f~~ 58 (99)
.+|.+||++||..+ +|||+|+|+|||||+ ...|||||.-. ..||+|||..|.+
T Consensus 69 ~vt~~El~KH~~~d---DcW~~i~G~VYnVt~-Yl~fHPgG~d~lmk~aGrD~T~~Fnk 123 (145)
T KOG0536|consen 69 PVTAEELKKHNKKD---DCWIAIRGKVYNVTA-YLDFHPGGVDELMKHAGRDATKLFNK 123 (145)
T ss_pred ccCHHHHHhhCCcc---ceEEEEcCEEEeccc-ccccCCCCHHHHHHhcCcchHHHHHH
Confidence 47899999999987 799999999999998 78899999954 5999999999984
No 7
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.28 E-value=4.7e-12 Score=90.64 Aligned_cols=59 Identities=27% Similarity=0.439 Sum_probs=52.0
Q ss_pred CCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCcccc--ccccCchHHHHhhcCCCCC
Q 034288 2 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYA--MFAGKDASRALAKMSKNDD 64 (99)
Q Consensus 2 ~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~--~~aG~DaT~~f~~~~~~~~ 64 (99)
.++.+|+.+|++.+ ++||+|+|+|||||. +.-.||||.-. ..+|+|||.+|....++..
T Consensus 51 ~~~~eev~~h~~~~---d~~ivi~g~VyDvs~-fl~~HPGGe~ii~~~~g~Dat~~f~~~~~~~~ 111 (164)
T COG5274 51 PITAEEVAKHNKSE---DCWIVINGKVYDVSQ-FLDEHPGGEDIIKDTAGKDATKAFNFLHHSHQ 111 (164)
T ss_pred cccHHHHHHhcCcc---ceEEEEcCEEEEhhh-ccccCCCcceeehhccCchhhhhhcccccchh
Confidence 57899999999976 699999999999997 67799999954 5999999999998888743
No 8
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.19 E-value=1.4e-11 Score=101.17 Aligned_cols=55 Identities=22% Similarity=0.437 Sum_probs=48.1
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCcccc-ccccCchHHHHhhc
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYA-MFAGKDASRALAKM 59 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~-~~aG~DaT~~f~~~ 59 (99)
+.+|++|+++|+..+ +|||+|+|+|||||+ +...||||... .++|+|||.+|...
T Consensus 104 ~~~t~~ev~~H~~~~---d~Wivi~gkVYDvT~-fl~~HPGG~~i~~~aG~DaT~~F~~~ 159 (526)
T PLN03198 104 KSHLLSEVAAHNKPN---DCWIVIKNKVYDVSD-FAAEHPGGSVISTYFGRDGTDAFSSF 159 (526)
T ss_pred CcCCHHHHHhhCCCC---CeEEEECCEEEecHH-HHHhCCCchHHHHhcCCcHhHHHHHh
Confidence 479999999999876 799999999999997 66679999832 49999999999876
No 9
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.17 E-value=2.6e-11 Score=98.48 Aligned_cols=54 Identities=22% Similarity=0.379 Sum_probs=47.0
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCcccc-ccccCchHHHHhhc
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYA-MFAGKDASRALAKM 59 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~-~~aG~DaT~~f~~~ 59 (99)
|.+|++|+++|+..+ ++||+|+|+|||||+ +. .||||... .+||+|||.+|...
T Consensus 24 ~~~s~~ev~~h~~~~---~~wi~i~g~vYDvt~-f~-~HPGG~~i~~~aG~DaT~~F~~~ 78 (485)
T PLN03199 24 QKISWQEVKKHASPD---DAWIIHQNKVYDVSN-WH-DHPGGAVIFTHAGDDMTDIFAAF 78 (485)
T ss_pred CccCHHHHHhhCCCC---CeEEEECCEEEcCCC-cC-cCCCchHHHhhCCCChhHHHHHh
Confidence 579999999999865 799999999999998 54 69999832 49999999999764
No 10
>PLN02252 nitrate reductase [NADPH]
Probab=99.05 E-value=1e-10 Score=100.92 Aligned_cols=55 Identities=25% Similarity=0.465 Sum_probs=48.2
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCcc--ccccccCchHHHHhhc
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGA--YAMFAGKDASRALAKM 59 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~--y~~~aG~DaT~~f~~~ 59 (99)
|.||++||++|+..+ ++||+|+|+|||||+ +...||||. ...+||+|||.+|...
T Consensus 518 ~~~t~~ev~~h~~~~---~~Wivi~g~VYDvT~-fl~~HPGG~~~I~~~aG~DaT~~F~~~ 574 (888)
T PLN02252 518 KQYTMSEVRKHNSED---SCWIVVHGHVYDCTR-FLKDHPGGADSILINAGTDCTEEFDAI 574 (888)
T ss_pred ceeCHHHHHhhCcCC---CeEEEECCEEEeCHH-HHHHCCChHHHHHhhcCCCcHHHHhhh
Confidence 569999999999865 799999999999998 666799997 4469999999999864
No 11
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=98.76 E-value=2.1e-09 Score=86.31 Aligned_cols=58 Identities=22% Similarity=0.428 Sum_probs=50.7
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCcc--ccccccCchHHHHhhcCCCC
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGA--YAMFAGKDASRALAKMSKND 63 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~--y~~~aG~DaT~~f~~~~~~~ 63 (99)
+.+|+|+++++|+.+ +.|++|+| |||+|+ +.--||||+ ...++|.|||++|.++..+.
T Consensus 8 ~~~~we~~~~~~~~~---~~W~~id~-vYd~s~-~~~~HPGG~~~I~~~~g~DaTdaF~AfH~~~ 67 (430)
T KOG4232|consen 8 TTFSWEGKRKHDKAE---GLWLVIDG-VYDISD-WIKRHPGGSRVIEHYAGQDATDAFEAFHPGT 67 (430)
T ss_pred eeeeccchhhccCCC---ceEEEeec-cccHHH-HHHhCCCchhHHHHhcCCccchHHHHhCCCh
Confidence 358999999999987 68999999 999998 666799997 55799999999999888764
No 12
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=97.85 E-value=8.2e-06 Score=57.58 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=40.6
Q ss_pred CCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccccccccCchHHHH
Q 034288 2 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRAL 56 (99)
Q Consensus 2 ~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~~~aG~DaT~~f 56 (99)
.++.||+++|+... .+|||-+..-|||||. +...||||....+|---|-+.|
T Consensus 81 iY~~EEV~~H~s~e--~rIWVTyg~gVyDVTd-Fv~~HPGGdKillAAG~a~dPF 132 (167)
T KOG4576|consen 81 IYTKEEVSSHTSPE--TRIWVTYGSGVYDVTD-FVDLHPGGDKILLAAGGALDPF 132 (167)
T ss_pred chhHHHHHhcCCCc--cceEEEecCcceeHHH-HHHhCCCcceeeeecCCCcCcH
Confidence 57899999999865 5899999999999998 7778999986654433333333
No 13
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=83.27 E-value=0.83 Score=30.17 Aligned_cols=14 Identities=36% Similarity=0.921 Sum_probs=12.3
Q ss_pred eEEEEcCeEEeecc
Q 034288 20 IYVAIKGRVFDVTT 33 (99)
Q Consensus 20 ~~vai~G~VyDVT~ 33 (99)
.|+..+|+|||||.
T Consensus 57 yy~c~~g~VyDiTe 70 (94)
T PF14901_consen 57 YYACMDGKVYDITE 70 (94)
T ss_pred EEEEcCceEEehhh
Confidence 47788999999997
No 14
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=71.36 E-value=3.3 Score=27.86 Aligned_cols=28 Identities=32% Similarity=0.642 Sum_probs=22.2
Q ss_pred CCCCHHHHhhHHHHH-HHHhccCCcceEe
Q 034288 71 DGLTEKEMGVLSDWE-KKFEAKYPVVGRV 98 (99)
Q Consensus 71 ~~L~~~e~~~l~~W~-~~~~~kY~~VG~l 98 (99)
.++.+.-++.+.+|. .+|+.|||..|.+
T Consensus 72 ~e~e~d~l~YiaGyVa~k~~~k~p~L~~~ 100 (106)
T PF12596_consen 72 DEIEEDGLEYIAGYVAKKFRNKYPNLGDY 100 (106)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCchhhe
Confidence 345666688899998 5799999999864
No 15
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=66.61 E-value=4.6 Score=27.88 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=12.2
Q ss_pred eEEEEcCeEEeecc
Q 034288 20 IYVAIKGRVFDVTT 33 (99)
Q Consensus 20 ~~vai~G~VyDVT~ 33 (99)
.=|-|||++|||+=
T Consensus 5 ~~itvng~~y~V~v 18 (130)
T PRK06549 5 FKITIDGKEYLVEM 18 (130)
T ss_pred EEEEECCEEEEEEE
Confidence 45899999999985
No 16
>cd06583 PGRP Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of
Probab=54.32 E-value=22 Score=22.71 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=39.9
Q ss_pred CCeEEEEcCeEEeecc-cCceeCCCccccccccCchHHHHhhcCCCCCCCCC-CCCCCCHHHHhhHHHHHHHHhccCCc
Q 034288 18 KPIYVAIKGRVFDVTT-GKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTP-SLDGLTEKEMGVLSDWEKKFEAKYPV 94 (99)
Q Consensus 18 ~~~~vai~G~VyDVT~-~~~~y~pgg~y~~~aG~DaT~~f~~~~~~~~~~~~-~~~~L~~~e~~~l~~W~~~~~~kY~~ 94 (99)
--.+|.=+|.||-+-. ...-+|-|+.. ...++.-|-+.. +-...++.|++.+.++...+.++|++
T Consensus 38 ~H~~I~~~G~i~q~~~~~~~a~hag~~~------------N~~sigIe~~g~~~~~~~~~~q~~~~~~L~~~l~~~~~i 104 (126)
T cd06583 38 YHFLVGGDGRIYQGRGWNYVGWHAGGNY------------NSYSIGIELIGNFDGGPPTAAQLEALAELLAYLVKRYGI 104 (126)
T ss_pred ceEEEcCCCEEEEECCCCccccccCCCC------------CCceEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3467888889999875 33345554411 111111111111 11268999999999999999999987
No 17
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=51.97 E-value=30 Score=20.42 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=22.1
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeec
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVT 32 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT 32 (99)
.|+.+|.+.-+.+ .+.+-|++|+.|-.=+
T Consensus 16 ~tl~~ll~~l~~~-~~~vaVavN~~iv~r~ 44 (66)
T PRK08053 16 QTVHELLEQLNQL-QPGAALAINQQIIPRE 44 (66)
T ss_pred CCHHHHHHHcCCC-CCcEEEEECCEEeChH
Confidence 5888888876654 4569999999996544
No 18
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=50.97 E-value=29 Score=20.30 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=22.9
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecc
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTT 33 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~ 33 (99)
.|.++|.+.-+.+ ...+-|++||++-.-+.
T Consensus 15 ~tv~~ll~~l~~~-~~~i~V~vNg~~v~~~~ 44 (65)
T cd00565 15 ATLAELLEELGLD-PRGVAVALNGEIVPRSE 44 (65)
T ss_pred CCHHHHHHHcCCC-CCcEEEEECCEEcCHHH
Confidence 4788888876655 45789999999976653
No 19
>PF10618 Tail_tube: Phage tail tube protein; InterPro: IPR019596 This entry is represented by Bacteriophage Mu, GpM tail tube protein. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.
Probab=47.89 E-value=25 Score=23.66 Aligned_cols=60 Identities=20% Similarity=0.398 Sum_probs=38.6
Q ss_pred CeEEEEcCeEEeecccCceeCCCcccc-ccccCchHHHHhhcCCCCC-CCC-CCCCCCCHHHHh
Q 034288 19 PIYVAIKGRVFDVTTGKSFYGPGGAYA-MFAGKDASRALAKMSKNDD-DVT-PSLDGLTEKEMG 79 (99)
Q Consensus 19 ~~~vai~G~VyDVT~~~~~y~pgg~y~-~~aG~DaT~~f~~~~~~~~-~~~-~~~~~L~~~e~~ 79 (99)
.+||-|+|+-|++..+. -|.|||.-. ...|.|...-|....-.+. .++ .+..+++..++.
T Consensus 8 ~a~i~vdG~~l~~~~g~-~~~~gg~~Re~~~G~~~v~G~sE~~~~~~i~~ti~~~~~~~~~~i~ 70 (119)
T PF10618_consen 8 TAYIRVDGQQLPVKGGA-TYNPGGVKRETVVGQDGVHGYSETPKAPFIKCTIRDTKDTDVDDIN 70 (119)
T ss_pred EEEEEECCEEEEccCCe-EECCCCeEEeeeECCCCcccEeccccCcEEEEEEEcCCCCCHHHHh
Confidence 58999999999999864 589998854 6888776666643333221 111 144455555544
No 20
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=47.16 E-value=36 Score=19.86 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=21.4
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEe
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFD 30 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyD 30 (99)
.|..+|.+.-+.+ ...+-|++||++-.
T Consensus 14 ~tv~~ll~~l~~~-~~~v~v~vN~~iv~ 40 (64)
T TIGR01683 14 LTLAALLESLGLD-PRRVAVAVNGEIVP 40 (64)
T ss_pred CcHHHHHHHcCCC-CCeEEEEECCEEcC
Confidence 5788888877665 45789999999954
No 21
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=46.52 E-value=35 Score=20.43 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=23.6
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecc
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTT 33 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~ 33 (99)
.|..||.+.-+-+ .+.+-|++||.|..=+.
T Consensus 17 ~tv~~lL~~l~~~-~~~vav~vN~~iv~r~~ 46 (67)
T PRK07696 17 KTVAELLTHLELD-NKIVVVERNKDILQKDD 46 (67)
T ss_pred ccHHHHHHHcCCC-CCeEEEEECCEEeCHHH
Confidence 4788888877765 55799999999987665
No 22
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=45.59 E-value=24 Score=24.86 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=22.8
Q ss_pred CCCCCCHHHHhhHHHHHHHHhccCCc
Q 034288 69 SLDGLTEKEMGVLSDWEKKFEAKYPV 94 (99)
Q Consensus 69 ~~~~L~~~e~~~l~~W~~~~~~kY~~ 94 (99)
.+..+++++.+.|.++-..|++||-+
T Consensus 84 gl~~~~~~~~~~L~~lN~~Y~~kFGf 109 (157)
T TIGR03164 84 GLDQLSQEEFARFTRLNNAYRARFGF 109 (157)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHCCC
Confidence 57789999999999999999998743
No 23
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=44.99 E-value=42 Score=19.48 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=23.5
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecc
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTT 33 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~ 33 (99)
.|+.+|.+.-+-+ ...+-|++||.|..=+.
T Consensus 16 ~tl~~lL~~l~~~-~~~vav~vNg~iv~r~~ 45 (66)
T PRK05659 16 ESVAALLAREGLA-GRRVAVEVNGEIVPRSQ 45 (66)
T ss_pred CCHHHHHHhcCCC-CCeEEEEECCeEeCHHH
Confidence 5888888877765 45788999999987554
No 24
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=44.80 E-value=25 Score=24.82 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCCCCCHHHHhhHHHHHHHHhccCCc
Q 034288 69 SLDGLTEKEMGVLSDWEKKFEAKYPV 94 (99)
Q Consensus 69 ~~~~L~~~e~~~l~~W~~~~~~kY~~ 94 (99)
.+..+++.+...|.+|-..|++||-+
T Consensus 84 gl~~~~~~~~~~L~~lN~~Y~~kFGf 109 (158)
T TIGR03180 84 GVDGADEETRAALLEGNAAYEEKFGR 109 (158)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHCCC
Confidence 67789999999999999999998744
No 25
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=44.79 E-value=25 Score=25.05 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.9
Q ss_pred CCCCCCHHHHhhHHHHHHHHhccCCc
Q 034288 69 SLDGLTEKEMGVLSDWEKKFEAKYPV 94 (99)
Q Consensus 69 ~~~~L~~~e~~~l~~W~~~~~~kY~~ 94 (99)
.+..|++.+...|.+|-..|++||-+
T Consensus 89 gl~~l~~~~~~~l~~lN~~Y~~kFGf 114 (166)
T PRK13798 89 GVADADEAVMAALAAGNRAYEEKFGF 114 (166)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCC
Confidence 57789999999999999999998744
No 26
>PF05989 Chordopox_A35R: Chordopoxvirus A35R protein; InterPro: IPR009247 This family consists of several Chordopoxvirus sequences homologous to the Vaccinia virus A35R protein. The function of this family is unknown.
Probab=44.24 E-value=31 Score=25.22 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=23.2
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecccC
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGK 35 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~ 35 (99)
++.++|.+.+-. +||||.||+|.-.|+..
T Consensus 49 i~~~~i~~~~i~----dCYia~nG~i~~Cs~~~ 77 (176)
T PF05989_consen 49 ISMNLINQRDIQ----DCYIAYNGNILHCSEDN 77 (176)
T ss_pred cCHHHhhhhccc----cEEEEECCEEEeccchh
Confidence 567788776654 69999999999999843
No 27
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=44.07 E-value=14 Score=30.85 Aligned_cols=15 Identities=33% Similarity=0.862 Sum_probs=13.1
Q ss_pred CeEEEEcCeEEeecc
Q 034288 19 PIYVAIKGRVFDVTT 33 (99)
Q Consensus 19 ~~~vai~G~VyDVT~ 33 (99)
..|+.-+|+|||+|+
T Consensus 378 tyy~c~DgkVYDITe 392 (490)
T KOG0720|consen 378 TYYACMDGKVYDITE 392 (490)
T ss_pred eeeeecCCceEeehh
Confidence 467888999999997
No 28
>PRK11789 N-acetyl-anhydromuranmyl-L-alanine amidase; Provisional
Probab=44.00 E-value=31 Score=25.07 Aligned_cols=70 Identities=14% Similarity=0.295 Sum_probs=42.2
Q ss_pred EEEEcCeEEeecc-cCceeCCCccccccccCchHHHHhhcCCCCCCCCCCCCCCCHHHHhhHHHHHHHHhccCCcc
Q 034288 21 YVAIKGRVFDVTT-GKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVV 95 (99)
Q Consensus 21 ~vai~G~VyDVT~-~~~~y~pgg~y~~~aG~DaT~~f~~~~~~~~~~~~~~~~L~~~e~~~l~~W~~~~~~kY~~V 95 (99)
+|.-+|.|+-.-. ...-||-|.. .+.|+.- +...+..=|-...+....++.|.++|......+.++||+.
T Consensus 79 ~I~rdG~I~Q~V~~~~~AwHAG~s--~w~G~~~---~N~~SIGIEl~G~~~~~~t~aQ~~aL~~L~~~L~~~y~i~ 149 (185)
T PRK11789 79 LIRRDGEIVQFVSFDDRAWHAGVS--SFQGRER---CNDFSIGIELEGTDTLPFTDAQYQALAALTRALRAAYPII 149 (185)
T ss_pred EECCCCeEEEeccccccccccccc--ccCCcCC---CCCCEEEEEEECCCCCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 4555799987665 3344554422 2334321 1222222222223446789999999999999999999863
No 29
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=42.54 E-value=44 Score=19.52 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=22.6
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecc
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTT 33 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~ 33 (99)
.|+++|.++-+-+ .+.+-|++|+.|-.-+.
T Consensus 15 ~tl~~Ll~~l~~~-~~~vavavN~~iv~~~~ 44 (65)
T PRK06488 15 TTLALLLAELDYE-GNWLATAVNGELVHKEA 44 (65)
T ss_pred CcHHHHHHHcCCC-CCeEEEEECCEEcCHHH
Confidence 4788888876665 35688999999987543
No 30
>PRK06437 hypothetical protein; Provisional
Probab=42.37 E-value=46 Score=19.93 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=21.8
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEe
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFD 30 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyD 30 (99)
.|..||.+.-+-+ .+.+-|++||.+=.
T Consensus 21 ~tv~dLL~~Lgi~-~~~vaV~vNg~iv~ 47 (67)
T PRK06437 21 LTVNDIIKDLGLD-EEEYVVIVNGSPVL 47 (67)
T ss_pred CcHHHHHHHcCCC-CccEEEEECCEECC
Confidence 5888888876665 56799999999976
No 31
>PF06299 DUF1045: Protein of unknown function (DUF1045); InterPro: IPR009389 This family consists of several hypothetical proteins from Agrobacterium, Rhizobium and Brucella species. The function of this family is unknown.
Probab=42.35 E-value=20 Score=25.66 Aligned_cols=45 Identities=22% Similarity=0.446 Sum_probs=31.3
Q ss_pred ccccccCchHHHHhh--cCCCCCCCCC-CCCCCCHHHHhhHHHHHHHHhccCCcc
Q 034288 44 YAMFAGKDASRALAK--MSKNDDDVTP-SLDGLTEKEMGVLSDWEKKFEAKYPVV 95 (99)
Q Consensus 44 y~~~aG~DaT~~f~~--~~~~~~~~~~-~~~~L~~~e~~~l~~W~~~~~~kY~~V 95 (99)
.+.+| .+|-++|.. .+.+++++.. .-..||+.|...|..| .||+|
T Consensus 56 L~~LA-a~cV~~~d~fRAPls~aelaRR~~~~Ls~~Q~~~L~rW------GYPYV 103 (160)
T PF06299_consen 56 LQALA-AACVRAFDPFRAPLSEAELARRRPAGLSPRQRANLERW------GYPYV 103 (160)
T ss_pred HHHHH-HHHHHhhhhccCCCChHHHhhcCcccCCHHHHHHHHHh------CCCce
Confidence 44455 456666654 4455556653 5789999999999999 57776
No 32
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=41.92 E-value=43 Score=20.48 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=23.8
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecc
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTT 33 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~ 33 (99)
.|.++|.+.-+-+ ...+-+++||.|.-=+.
T Consensus 18 ~tv~dLL~~l~~~-~~~vav~vNg~iVpr~~ 47 (68)
T COG2104 18 TTVADLLAQLGLN-PEGVAVAVNGEIVPRSQ 47 (68)
T ss_pred CcHHHHHHHhCCC-CceEEEEECCEEccchh
Confidence 5788888877776 56799999999986543
No 33
>PHA02983 hypothetical protein; Provisional
Probab=39.67 E-value=37 Score=24.88 Aligned_cols=28 Identities=11% Similarity=0.290 Sum_probs=22.1
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeeccc
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTG 34 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~ 34 (99)
++.++|.+.+-. +||||.||.|.-.|+.
T Consensus 50 i~~~~i~~~~l~----dCYia~nG~i~~CS~~ 77 (180)
T PHA02983 50 IPVNDIKQSDLQ----KCYISYNGKIVHCSKD 77 (180)
T ss_pred CCHHHhchhhhc----CeEEEECCEEEecCcc
Confidence 456677666554 6999999999999984
No 34
>PRK07440 hypothetical protein; Provisional
Probab=39.18 E-value=64 Score=19.48 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=23.2
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecc
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTT 33 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~ 33 (99)
.|+.+|.+.-+-+ .+.+-|++||.|..=+.
T Consensus 20 ~tl~~lL~~l~~~-~~~vav~~N~~iv~r~~ 49 (70)
T PRK07440 20 TSLPDLLQQLGFN-PRLVAVEYNGEILHRQF 49 (70)
T ss_pred CCHHHHHHHcCCC-CCeEEEEECCEEeCHHH
Confidence 5788888765555 45799999999988665
No 35
>PHA02310 hypothetical protein
Probab=36.35 E-value=36 Score=23.72 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=17.2
Q ss_pred EEEEcCeEEeecccCceeCCCc
Q 034288 21 YVAIKGRVFDVTTGKSFYGPGG 42 (99)
Q Consensus 21 ~vai~G~VyDVT~~~~~y~pgg 42 (99)
.+..+|++|||.+....|...|
T Consensus 90 ~lvwnGkry~v~g~~dW~~QDG 111 (130)
T PHA02310 90 QFIWTGRVFQLESQGSWFYQDG 111 (130)
T ss_pred EEEEcCcEEEEccccceeecCC
Confidence 6899999999998666665444
No 36
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=35.95 E-value=72 Score=20.20 Aligned_cols=30 Identities=20% Similarity=0.086 Sum_probs=23.0
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecc
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTT 33 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~ 33 (99)
.|+.+|.+.-+-+ .+.+-|++||.|..=+.
T Consensus 34 ~tl~~LL~~l~~~-~~~vAVevNg~iVpr~~ 63 (84)
T PRK06083 34 SSLAQIIAQLSLP-ELGCVFAINNQVVPRSE 63 (84)
T ss_pred CcHHHHHHHcCCC-CceEEEEECCEEeCHHH
Confidence 5788888766554 55789999999986665
No 37
>PF05603 DUF775: Protein of unknown function (DUF775); InterPro: IPR008493 This family consists of several eukaryotic proteins of unknown function.
Probab=34.96 E-value=20 Score=26.34 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=13.9
Q ss_pred HhhHHHHHHHHhccCC
Q 034288 78 MGVLSDWEKKFEAKYP 93 (99)
Q Consensus 78 ~~~l~~W~~~~~~kY~ 93 (99)
++.+++|.++|++|+.
T Consensus 181 ~~~~~~W~~kFe~Kl~ 196 (202)
T PF05603_consen 181 LSVFDKWWEKFERKLR 196 (202)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5799999999998864
No 38
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=31.46 E-value=61 Score=22.96 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=22.9
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccccccccCchHHHHh
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALA 57 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~~~aG~DaT~~f~ 57 (99)
++.++|++-|-. =||++|.| ||..|+|....|.|.+-.-.
T Consensus 38 l~~~~l~~~nP~----LV~~~isg-----------fG~~Gp~~~~~~~d~~~qA~ 77 (191)
T PF02515_consen 38 LDYEALRAINPR----LVYCSISG-----------FGQDGPYADRPGYDLVAQAA 77 (191)
T ss_dssp -SHHHHHHH-TT-----EEEEEES-----------S-SSSTTTTS---HHHHHHH
T ss_pred CCHHHHHhhCCC----CeEEEEEe-----------ecCCCccccCCCCCcccccc
Confidence 677888887642 36665543 78889999999999754433
No 39
>PF07901 DUF1672: Protein of unknown function (DUF1672); InterPro: IPR012873 This family is composed of hypothetical bacterial proteins of unknown function.
Probab=30.55 E-value=42 Score=26.20 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.9
Q ss_pred CHHHHhhHHHHHHHHhccCCcceE
Q 034288 74 TEKEMGVLSDWEKKFEAKYPVVGR 97 (99)
Q Consensus 74 ~~~e~~~l~~W~~~~~~kY~~VG~ 97 (99)
-++|.+.|....+..++||+++|+
T Consensus 121 ~keefd~L~~f~~~~akky~~tG~ 144 (277)
T PF07901_consen 121 YKEEFDNLDKFLEKNAKKYQYTGF 144 (277)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccc
Confidence 457788999999999999999996
No 40
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=30.08 E-value=53 Score=23.10 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=13.2
Q ss_pred CeEEEEcCeEEeecc
Q 034288 19 PIYVAIKGRVFDVTT 33 (99)
Q Consensus 19 ~~~vai~G~VyDVT~ 33 (99)
..-|.|||++|+|+-
T Consensus 24 ~~~itvnG~~y~V~v 38 (153)
T PRK05641 24 KFRVSFEGKTYEVEA 38 (153)
T ss_pred cEEEEECCEEEEEEE
Confidence 577999999999985
No 41
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=29.95 E-value=33 Score=19.80 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=13.5
Q ss_pred hHHHHHHHHhccCCcc
Q 034288 80 VLSDWEKKFEAKYPVV 95 (99)
Q Consensus 80 ~l~~W~~~~~~kY~~V 95 (99)
.=..|...|+++|+++
T Consensus 48 ~s~~Wl~rF~~Rh~~~ 63 (66)
T smart00674 48 ASNGWLTRFKKRHNIV 63 (66)
T ss_pred CCHHHHHHHHHHcCCc
Confidence 4578999999999875
No 42
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=29.69 E-value=48 Score=19.03 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=14.9
Q ss_pred CCCHHHHhhHHHHHHHH
Q 034288 72 GLTEKEMGVLSDWEKKF 88 (99)
Q Consensus 72 ~L~~~e~~~l~~W~~~~ 88 (99)
.|+++|+..|-.|.+.+
T Consensus 74 ~ls~~e~~~l~ayl~sl 90 (91)
T PF00034_consen 74 ILSDEEIADLAAYLRSL 90 (91)
T ss_dssp TSSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 68999999999998765
No 43
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=29.43 E-value=43 Score=27.03 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCCCHHHHhhHHHHHHHHhc
Q 034288 60 SKNDDDVTPSLDGLTEKEMGVLSDWEKKFEA 90 (99)
Q Consensus 60 ~~~~~~~~~~~~~L~~~e~~~l~~W~~~~~~ 90 (99)
.+..-.++-|+..|+++|++.+.+|.++|++
T Consensus 304 ~~g~~g~e~dl~~ls~~e~~~~~~~ia~YK~ 334 (394)
T PF02065_consen 304 MFGRLGLELDLTKLSEEELAAVKEQIAFYKS 334 (394)
T ss_dssp TCSEEEEESTGCGS-HHHHHHHHHHHHHHHH
T ss_pred hcCCceeccCcccCCHHHHHHHHHHHHHHHh
Confidence 3344445668999999999999999999985
No 44
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=29.28 E-value=32 Score=24.03 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=22.3
Q ss_pred CCCCCCCHHHHhhHHHHHHHHhccCC
Q 034288 68 PSLDGLTEKEMGVLSDWEKKFEAKYP 93 (99)
Q Consensus 68 ~~~~~L~~~e~~~l~~W~~~~~~kY~ 93 (99)
..+.++++.++..|..+-..|++||-
T Consensus 86 agl~~~~~~~~~~L~~lN~~Y~~kFG 111 (159)
T PF09349_consen 86 AGLDSLDEEELAELAALNQAYEEKFG 111 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcC
Confidence 35678999999999999999998763
No 45
>PRK13719 conjugal transfer transcriptional regulator TraJ; Provisional
Probab=29.05 E-value=71 Score=24.01 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=38.9
Q ss_pred CCHHHHhhhcCCCCCCCe--EEEEcCeEEeecccCceeCCCccccc--cc---cCchHHHHhhcCCCCCCCCCCCCCCCH
Q 034288 3 FTPAQLIQYNGTDPSKPI--YVAIKGRVFDVTTGKSFYGPGGAYAM--FA---GKDASRALAKMSKNDDDVTPSLDGLTE 75 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~--~vai~G~VyDVT~~~~~y~pgg~y~~--~a---G~DaT~~f~~~~~~~~~~~~~~~~L~~ 75 (99)
++..||..++... +-.+ =+-|+|+.|||.=-...++ +..+-. |- +-+.+.....++.. ......||+
T Consensus 73 l~~~El~~~s~~~-~~~~~~~~~i~~~~w~v~ie~~~~~-~~~~~lW~F~~~~s~~~~~~~~~~~~~----~~~~~~LS~ 146 (217)
T PRK13719 73 LSRAELDAMSEPS-GMNIIEDVFINNKLWDVIIESFIYG-GVVFFLWRFFCAASNVISSIIRGLSTN----LEAKNKVTK 146 (217)
T ss_pred hhHHHHHHhcccC-ceeEEeeeEEcCeEEEEEEEEEEeC-CceEEEEEEeeccccchhhhhhcccch----hhccCCCCH
Confidence 5677887766433 1111 2568999999986333334 444332 22 22333322222222 224456888
Q ss_pred HHHhhHH
Q 034288 76 KEMGVLS 82 (99)
Q Consensus 76 ~e~~~l~ 82 (99)
.|++.|+
T Consensus 147 RE~eVL~ 153 (217)
T PRK13719 147 YQNDVFI 153 (217)
T ss_pred HHHHHHH
Confidence 8887664
No 46
>PRK11430 putative CoA-transferase; Provisional
Probab=28.58 E-value=83 Score=25.05 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=25.9
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccccccccCchHH
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASR 54 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~~~aG~DaT~ 54 (99)
++.++|++-|-. =||++|.| ||+.|+|....|.|.+-
T Consensus 111 l~y~~L~~~nP~----LI~~sisg-----------fG~~GP~~~~pg~D~~~ 147 (381)
T PRK11430 111 FSWETLQEINPR----LIYASSSG-----------FGHTGPLKDAPAYDTII 147 (381)
T ss_pred CCHHHHHHHCCC----ceEEeeee-----------CCCCCCCCCCCCchHHH
Confidence 466777776542 36766543 78888999888888663
No 47
>PHA02671 hypothetical protein; Provisional
Probab=27.25 E-value=78 Score=23.21 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=20.8
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeeccc
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTG 34 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~ 34 (99)
+...++.+ +-. +||||.||.|.-.|+.
T Consensus 50 v~~~~i~~-~l~----dCYia~nG~il~CS~~ 76 (179)
T PHA02671 50 LPLTQVNM-LMS----DCYFAVNGNLLPCTED 76 (179)
T ss_pred ccHHHHhh-hhh----ceEEEECCEEEecCcc
Confidence 45667766 432 6999999999999984
No 48
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=26.52 E-value=1e+02 Score=18.05 Aligned_cols=30 Identities=30% Similarity=0.226 Sum_probs=22.7
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecc
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTT 33 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~ 33 (99)
.|+.+|.+.-+-+ .+.+-|++|+.|.-=+.
T Consensus 16 ~tl~~ll~~l~~~-~~~vav~~N~~iv~r~~ 45 (65)
T PRK05863 16 TTVAALLDSLGFP-EKGIAVAVDWSVLPRSD 45 (65)
T ss_pred CcHHHHHHHcCCC-CCcEEEEECCcCcChhH
Confidence 5788888876655 55799999999865544
No 49
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=26.48 E-value=1.3e+02 Score=18.88 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=20.9
Q ss_pred HHHhhhcCCC--------CCCCeEEEEcCeEEeecc
Q 034288 6 AQLIQYNGTD--------PSKPIYVAIKGRVFDVTT 33 (99)
Q Consensus 6 ~EL~~~~g~~--------~~~~~~vai~G~VyDVT~ 33 (99)
+++.+|..++ .+.|+-+-|+|+.|-|.-
T Consensus 22 ~aIE~YC~~~~~~l~Fisr~~Pi~~~idg~lYev~i 57 (74)
T PF14201_consen 22 EAIEKYCIKNGESLEFISRDKPITFKIDGVLYEVEI 57 (74)
T ss_pred HHHHHHHHHcCCceEEEecCCcEEEEECCeEEEEEE
Confidence 4566665432 267899999999999986
No 50
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.18 E-value=52 Score=24.05 Aligned_cols=49 Identities=18% Similarity=0.423 Sum_probs=33.9
Q ss_pred cccCchHHHHhhcCCCCCCCCCCCCCCCHHHHhhHHHHHHHHhcc--CCcc
Q 034288 47 FAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAK--YPVV 95 (99)
Q Consensus 47 ~aG~DaT~~f~~~~~~~~~~~~~~~~L~~~e~~~l~~W~~~~~~k--Y~~V 95 (99)
+||+=|..-=-+..-..|.....++.|++.|...+..--+.|.+| +|+|
T Consensus 75 LAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~rFgfPfI 125 (176)
T COG3195 75 LAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYVERFGFPFI 125 (176)
T ss_pred hHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 555555544444444445555679999999999998888888874 5665
No 51
>PF05521 Phage_H_T_join: Phage head-tail joining protein ; InterPro: IPR008767 This entry describes the head-tail adaptor protein of bacteriophage SPP1 and related proteins in other bacteriophage and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg7 (RCAP_rcc01689) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2KCA_A 2KZ4_A.
Probab=26.07 E-value=92 Score=18.46 Aligned_cols=16 Identities=13% Similarity=0.555 Sum_probs=12.5
Q ss_pred CCeEEEEcCeEEeecc
Q 034288 18 KPIYVAIKGRVFDVTT 33 (99)
Q Consensus 18 ~~~~vai~G~VyDVT~ 33 (99)
....|..+|++|+|.+
T Consensus 65 ~~~ri~~~g~~y~I~~ 80 (95)
T PF05521_consen 65 PDMRIKYDGKVYNIKS 80 (95)
T ss_dssp TTEEEEECTEEEEE-S
T ss_pred cceEEEECCEEEEEEE
Confidence 3467889999999997
No 52
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=26.00 E-value=80 Score=25.38 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=24.0
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccccccccCchH
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDAS 53 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~~~aG~DaT 53 (99)
++.++|++-|-. =||++|.| ||+.|+|....|.|..
T Consensus 107 l~~e~L~~~nP~----LI~~sisg-----------~G~~GP~~~~pg~D~~ 142 (416)
T PRK05398 107 FTWERIQEINPR----LIVASIKG-----------FGPGSPYEDVKAYENV 142 (416)
T ss_pred CCHHHHHhhCcC----EEEEEEee-----------CCCCCCCCCCCchHHH
Confidence 456777765532 25554433 7888999888888866
No 53
>TIGR03223 Phn_opern_protn putative phosphonate metabolism protein. This family of proteins is observed in the vicinity of other caharacterized genes involved in the catabolism of phosphonates via the3 C-P lyase system (GenProp0232), its function is unknown. These proteins are members of the somewhat broader pfam06299 model "Protein of unknown function (DUF1045)" which contains proteins found in a different genomic context as well.
Probab=25.18 E-value=54 Score=24.78 Aligned_cols=39 Identities=26% Similarity=0.502 Sum_probs=25.4
Q ss_pred chHHHHhh--cCCCCCCCCC-CCCCCCHHHHhhHHHHHHHHhccCCcc
Q 034288 51 DASRALAK--MSKNDDDVTP-SLDGLTEKEMGVLSDWEKKFEAKYPVV 95 (99)
Q Consensus 51 DaT~~f~~--~~~~~~~~~~-~~~~L~~~e~~~l~~W~~~~~~kY~~V 95 (99)
++-+.|.. .+.+++++.. .-..||+.|...|..| .||+|
T Consensus 122 ~~V~~~d~fRAPls~aelaRRr~~~Ls~~Q~~~L~~W------GYPYV 163 (228)
T TIGR03223 122 ACVRELDPFRAPLTEAELARRRPDQLTPRQRALLERW------GYPYV 163 (228)
T ss_pred HHHHhhhhccCCCCHHHHhhcCccCCCHHHHHHHHHc------CCCce
Confidence 44444443 2344444432 4668999999999999 57776
No 54
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=24.48 E-value=52 Score=20.39 Aligned_cols=22 Identities=41% Similarity=0.768 Sum_probs=13.3
Q ss_pred cCeEEeecccCceeCCCccccccccC
Q 034288 25 KGRVFDVTTGKSFYGPGGAYAMFAGK 50 (99)
Q Consensus 25 ~G~VyDVT~~~~~y~pgg~y~~~aG~ 50 (99)
.+-=||+| ..+|+|-...|||+
T Consensus 68 s~gwYDl~----v~~~~~F~rr~aGr 89 (89)
T PF05506_consen 68 SGGWYDLT----VTGPNGFLRRFAGR 89 (89)
T ss_pred CCCcEEEE----EEcCCCEEEEecCC
Confidence 44556665 25787733468886
No 55
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=24.39 E-value=5.2 Score=32.25 Aligned_cols=72 Identities=25% Similarity=0.379 Sum_probs=44.3
Q ss_pred HhhhcCCC--CCCCeEEEEcCeEEeeccc--CceeCCCccc-cccccCchHHHHhhcCCCCCCCCCCCCCCCHHHHhhHH
Q 034288 8 LIQYNGTD--PSKPIYVAIKGRVFDVTTG--KSFYGPGGAY-AMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLS 82 (99)
Q Consensus 8 L~~~~g~~--~~~~~~vai~G~VyDVT~~--~~~y~pgg~y-~~~aG~DaT~~f~~~~~~~~~~~~~~~~L~~~e~~~l~ 82 (99)
|-+++++. .+-+++|-+++.|++|+.- ...--|.-.. .+|||+..|++-.. -+-|++.-+.-++..|+
T Consensus 4 lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv-------~~cDL~qqs~~hi~~lR 76 (446)
T KOG0006|consen 4 LVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTV-------QNCDLSQQSATHIMLLR 76 (446)
T ss_pred EEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCcee-------ecccccccchhhhhccC
Confidence 45667543 2457999999999999871 1111132233 37999997764321 12255556666777777
Q ss_pred HHHH
Q 034288 83 DWEK 86 (99)
Q Consensus 83 ~W~~ 86 (99)
-|.+
T Consensus 77 P~~~ 80 (446)
T KOG0006|consen 77 PWRK 80 (446)
T ss_pred cccc
Confidence 7864
No 56
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=23.93 E-value=78 Score=26.75 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHhhHHHHHHHHhccCCc
Q 034288 68 PSLDGLTEKEMGVLSDWEKKFEAKYPV 94 (99)
Q Consensus 68 ~~~~~L~~~e~~~l~~W~~~~~~kY~~ 94 (99)
..+..|++++.+.|.++-..|++||-+
T Consensus 438 AGL~~ls~~e~~~L~~lN~aY~eKFGF 464 (516)
T PRK13797 438 AAMDQAAEDVRAAFARGNAAYEERFGF 464 (516)
T ss_pred hccccCCHHHHHHHHHHHHHHHHhCCC
Confidence 457789999999999999999998754
No 57
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=23.78 E-value=66 Score=20.06 Aligned_cols=23 Identities=22% Similarity=0.622 Sum_probs=14.8
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEE
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVF 29 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~Vy 29 (99)
.+.+||...+. +.+||..| |.+|
T Consensus 33 ~~~~eL~~l~~---~~~~y~~v-G~~f 55 (106)
T PF01920_consen 33 LTLEELEKLDD---DRKVYKSV-GKMF 55 (106)
T ss_dssp HHHHHHHTSST---T-EEEEEE-TTEE
T ss_pred HHHHHHHhCCC---cchhHHHH-hHHH
Confidence 35677777654 34899999 4444
No 58
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=23.42 E-value=97 Score=18.43 Aligned_cols=43 Identities=14% Similarity=0.340 Sum_probs=26.5
Q ss_pred ccCchHHHHhhcCCCCCCC-CC---C--CCCCCHHHHhhHHHHHHHHhc
Q 034288 48 AGKDASRALAKMSKNDDDV-TP---S--LDGLTEKEMGVLSDWEKKFEA 90 (99)
Q Consensus 48 aG~DaT~~f~~~~~~~~~~-~~---~--~~~L~~~e~~~l~~W~~~~~~ 90 (99)
-||+++.-.+++.-+=+.+ +. . -.+++..++..|-.|.+.|+.
T Consensus 8 IGR~~~~~~~kf~~~w~~lf~~~s~~LK~~GIp~r~RryiL~~~ek~r~ 56 (57)
T PF09597_consen 8 IGRGCEEHAEKFESDWEKLFTTSSKQLKELGIPVRQRRYILRWREKYRQ 56 (57)
T ss_pred HcccHHHHHHHHHHHHHHHHhcCHHHHHHCCCCHHHHHHHHHHHHHHhC
Confidence 4677766665543311111 11 1 137799999999999999864
No 59
>COG1804 CaiB Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]
Probab=23.11 E-value=1.2e+02 Score=24.71 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=27.5
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccccccccCchHHH
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRA 55 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~~~aG~DaT~~ 55 (99)
++.|.|++.|-. =||++|.| ||..|+|...+|.|..-.
T Consensus 108 l~ye~L~~~NP~----LIy~sisG-----------fGq~GP~~~~~gyD~~~q 145 (396)
T COG1804 108 LGYEALRAINPR----LIYCSISG-----------FGQTGPYADRPGYDLIAQ 145 (396)
T ss_pred CCHHHHHhhCCC----eEEEEEee-----------CCCCCCCCCCCCccHHHH
Confidence 577888887743 37776654 777789999999995443
No 60
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=22.73 E-value=62 Score=22.93 Aligned_cols=23 Identities=0% Similarity=0.205 Sum_probs=20.4
Q ss_pred CCCCCCCHHHHhhHHHHHHHHhc
Q 034288 68 PSLDGLTEKEMGVLSDWEKKFEA 90 (99)
Q Consensus 68 ~~~~~L~~~e~~~l~~W~~~~~~ 90 (99)
.++++|++..++.|.+|.+.|+.
T Consensus 106 ~~l~Dl~~~~l~~I~~fF~~YK~ 128 (155)
T cd00412 106 NDISDVPPHLLDEIKHFFEHYKD 128 (155)
T ss_pred CChHHCCHHHHHHHHHHHHHhcc
Confidence 37889999999999999999974
No 61
>PF09733 VEFS-Box: VEFS-Box of polycomb protein; InterPro: IPR019135 The VEFS-Box is found in the the C-terminal region of the VRN2, EMF2, FIS2, and Su(z)12 polycomb proteins. This domain is characterised by an acidic cluster and a tryptophan/methionine-rich sequence, the acidic-W/M domain []. In some proteins the VEFS-Box is associated with a zinc-finger domain located roughly 100 residues towards the N terminus. These proteins are part of the polycomb cluster of proteins which control HOX gene transcription as it functions in heterochromatin-mediated repression [].
Probab=22.32 E-value=88 Score=21.74 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=22.4
Q ss_pred CCCCCCHHHHhhHHHHHHHHhccCCcce
Q 034288 69 SLDGLTEKEMGVLSDWEKKFEAKYPVVG 96 (99)
Q Consensus 69 ~~~~L~~~e~~~l~~W~~~~~~kY~~VG 96 (99)
+.+|+++.|.+-+..|-.+.. |+++++
T Consensus 60 dF~Dv~~~EKefM~lWN~fv~-k~r~~a 86 (140)
T PF09733_consen 60 DFSDVNEEEKEFMKLWNSFVM-KQRVIA 86 (140)
T ss_pred HccCCCHHHHHHHHHHHHHHH-HccCcc
Confidence 678999999999999999886 455554
No 62
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=22.07 E-value=1.6e+02 Score=17.43 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=19.5
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEE
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVF 29 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~Vy 29 (99)
.|..+|.+.-+-+ .+.+-|++||.+=
T Consensus 24 ~tv~~ll~~l~~~-~~~v~v~vNg~iv 49 (70)
T PRK08364 24 MKVADILRAVGFN-TESAIAKVNGKVA 49 (70)
T ss_pred CcHHHHHHHcCCC-CccEEEEECCEEC
Confidence 4788888866655 3468999999984
No 63
>PRK13619 psbV cytochrome c-550; Provisional
Probab=21.85 E-value=1.2e+02 Score=21.86 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=16.3
Q ss_pred CCCCCCCCHHHHhhHHHHHH
Q 034288 67 TPSLDGLTEKEMGVLSDWEK 86 (99)
Q Consensus 67 ~~~~~~L~~~e~~~l~~W~~ 86 (99)
-+-++.|+++|+..+.+|.-
T Consensus 126 ~P~mr~LtdedL~~iAg~IL 145 (160)
T PRK13619 126 FPELRNFTEDDLYDVAGYML 145 (160)
T ss_pred ccccCCCCHHHHHHHHHHHH
Confidence 33467999999999999963
No 64
>PF09568 RE_MjaI: MjaI restriction endonuclease; InterPro: IPR019068 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MjaI (recognises CTAG but cleavage site unknown) restriction endonuclease. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=21.67 E-value=57 Score=23.71 Aligned_cols=15 Identities=33% Similarity=0.886 Sum_probs=13.4
Q ss_pred hhHHHHHHHHhccCC
Q 034288 79 GVLSDWEKKFEAKYP 93 (99)
Q Consensus 79 ~~l~~W~~~~~~kY~ 93 (99)
.++++|++.|.++||
T Consensus 32 kt~eeWe~wY~~~~~ 46 (170)
T PF09568_consen 32 KTIEEWEEWYFEKYP 46 (170)
T ss_pred CCHHHHHHHHHhcCh
Confidence 689999999998886
No 65
>PF05132 RNA_pol_Rpc4: RNA polymerase III RPC4; InterPro: IPR007811 This family comprises a specific subunit for Pol III, the tRNA specific polymerase.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006383 transcription from RNA polymerase III promoter, 0005666 DNA-directed RNA polymerase III complex
Probab=20.36 E-value=1.2e+02 Score=20.30 Aligned_cols=19 Identities=42% Similarity=0.656 Sum_probs=15.6
Q ss_pred CCCeEEEEcCeEEeecccC
Q 034288 17 SKPIYVAIKGRVFDVTTGK 35 (99)
Q Consensus 17 ~~~~~vai~G~VyDVT~~~ 35 (99)
++++=|.|.|.+|||+.|.
T Consensus 77 SGkv~l~iG~~~~dV~~G~ 95 (131)
T PF05132_consen 77 SGKVTLKIGGVVFDVSPGT 95 (131)
T ss_pred CCcEEEEECCEEEEecCCC
Confidence 4568899999999999853
No 66
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.28 E-value=3.2e+02 Score=21.26 Aligned_cols=62 Identities=24% Similarity=0.312 Sum_probs=37.4
Q ss_pred HHHhhhcCCCCCCCeEEEEcCeEEeecccCcee--CCCcccc------ccccCchHHHHhhcCCCCCCCCCCCCCCCHHH
Q 034288 6 AQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFY--GPGGAYA------MFAGKDASRALAKMSKNDDDVTPSLDGLTEKE 77 (99)
Q Consensus 6 ~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y--~pgg~y~------~~aG~DaT~~f~~~~~~~~~~~~~~~~L~~~e 77 (99)
+-|-+|+|.- .++++|.| .|.|- .+.| +|.|+.. .=.|..|+-+.-...+.+ +|+++|
T Consensus 122 Q~LFrYqG~I---gA~LiiGG--vD~TG-pHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~--------dlt~ee 187 (271)
T KOG0173|consen 122 QHLFRYQGHI---GAALILGG--VDPTG-PHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKP--------DLTKEE 187 (271)
T ss_pred HHHHHhcCcc---cceeEEcc--ccCCC-CceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCc--------ccCHHH
Confidence 3455677755 57899988 48884 7777 7888743 245555554443222222 566666
Q ss_pred HhhH
Q 034288 78 MGVL 81 (99)
Q Consensus 78 ~~~l 81 (99)
-..|
T Consensus 188 a~~L 191 (271)
T KOG0173|consen 188 AIKL 191 (271)
T ss_pred HHHH
Confidence 5444
No 67
>PF10339 Vel1p: Yeast-specific zinc responsive; InterPro: IPR019435 This entry represents putative velum formation proteins found in fungi. They are of unknown function but are highly induced in zinc-depleted conditions and have increased expression in NAP1 deletion mutants [].
Probab=20.23 E-value=54 Score=24.11 Aligned_cols=60 Identities=23% Similarity=0.402 Sum_probs=35.0
Q ss_pred Eeecc--cCceeCCC-cccc-ccccCchHHHHhhcCCCCCCCCCCCCCCCHHHHhhHHHHHHHHhccCCcceEe
Q 034288 29 FDVTT--GKSFYGPG-GAYA-MFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRV 98 (99)
Q Consensus 29 yDVT~--~~~~y~pg-g~y~-~~aG~DaT~~f~~~~~~~~~~~~~~~~L~~~e~~~l~~W~~~~~~kY~~VG~l 98 (99)
||+|. .....||- |.|. ..+|+++|-.=.+.-...+.+.. ..-+-|..+++..+.++=||
T Consensus 19 fdltnvtC~~LhGphCGTY~lkV~g~n~tflGq~~fVGadaLt~----------~a~daw~R~L~qE~RfiPrL 82 (203)
T PF10339_consen 19 FDLTNVTCSGLHGPHCGTYLLKVVGQNGTFLGQKTFVGADALTE----------SAGDAWGRYLEQETRFIPRL 82 (203)
T ss_pred eecccceecCccCCCcccEEEEEeccCCcEeeeeeeechhhhcc----------chhHHHHHHhccCcccccce
Confidence 55554 24455665 6676 58898887543322223222221 24467888888888777665
Done!