Query 034288
Match_columns 99
No_of_seqs 163 out of 1083
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 20:24:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j03_A Putative steroid bindin 100.0 2.7E-42 9.3E-47 228.8 9.5 99 1-99 3-101 (102)
2 2ibj_A Cytochrome B5, CYTB5; F 99.8 2.5E-19 8.5E-24 114.9 4.2 58 1-62 7-66 (88)
3 1x3x_A Cytochrome B5; hemoprot 99.7 1.8E-18 6.3E-23 109.7 4.9 56 1-60 4-62 (82)
4 1cyo_A Cytochrome B5; electron 99.7 1.3E-18 4.3E-23 113.0 3.7 58 1-62 5-64 (93)
5 3ner_A Cytochrome B5 type B; h 99.7 2.4E-18 8.2E-23 111.6 4.1 58 1-62 10-69 (92)
6 1cxy_A Cytochrome B5; helix, b 99.7 5E-18 1.7E-22 109.4 5.5 54 1-58 8-63 (90)
7 3lf5_A Cytochrome B5 reductase 99.7 2.2E-18 7.5E-23 111.0 2.0 58 1-62 6-65 (88)
8 1hko_A Cytochrome B5; electron 99.7 5.7E-18 1.9E-22 112.1 2.8 58 1-62 9-68 (104)
9 2keo_A Probable E3 ubiquitin-p 99.7 9E-18 3.1E-22 112.6 0.6 59 1-63 24-84 (112)
10 1mj4_A Sulfite oxidase; cytoch 99.6 7.8E-16 2.7E-20 97.6 2.2 54 1-58 5-60 (82)
11 1kbi_A Cytochrome B2, L-LCR; f 99.4 3.4E-14 1.2E-18 114.6 3.9 58 1-63 9-68 (511)
12 1sox_A Sulfite oxidase; oxidor 99.2 5.6E-12 1.9E-16 101.0 3.6 53 1-58 5-60 (466)
13 1hji_B NUN-protein; bacterioph 48.5 20 0.00068 17.2 2.7 19 71-89 2-20 (26)
14 1f0z_A THis protein; ubiquitin 45.8 27 0.00091 19.6 3.5 28 3-31 16-43 (66)
15 2kl0_A Putative thiamin biosyn 45.7 18 0.00062 21.2 2.8 29 3-32 15-43 (73)
16 1tyg_B YJBS; alpha beta barrel 43.7 24 0.00081 21.6 3.2 29 3-32 37-65 (87)
17 1ryj_A Unknown; beta/alpha pro 42.8 32 0.0011 19.6 3.6 28 3-31 24-51 (70)
18 2g04_A Probable fatty-acid-COA 41.3 27 0.00093 26.5 3.9 38 3-55 96-133 (359)
19 2yim_A Probable alpha-methylac 41.3 26 0.0009 26.6 3.8 38 3-55 94-131 (360)
20 2cu3_A Unknown function protei 35.7 27 0.00094 19.5 2.4 29 3-32 14-42 (64)
21 1q7e_A Hypothetical protein YF 35.3 37 0.0012 26.5 3.8 38 3-55 109-146 (428)
22 2o70_A OHCU decarboxylase; URI 34.7 20 0.0007 24.6 2.1 25 69-93 92-116 (174)
23 2o8i_A AGR_C_4230P, hypothetic 34.7 22 0.00076 24.2 2.2 27 67-93 86-112 (165)
24 4ed9_A CAIB/BAIF family protei 34.5 38 0.0013 25.9 3.8 38 3-55 115-152 (385)
25 1nwd_B GAD, glutamate decarbox 34.5 18 0.00061 17.6 1.2 18 74-91 8-25 (28)
26 3ubm_A COAT2, formyl-COA:oxala 30.9 47 0.0016 26.0 3.8 38 3-55 133-170 (456)
27 3mab_A Uncharacterized protein 27.8 30 0.001 21.5 1.8 22 69-90 66-87 (93)
28 3mi6_A Alpha-galactosidase; NE 27.5 39 0.0013 28.4 2.9 25 66-90 604-628 (745)
29 2wzp_P Lactococcal phage P2 OR 27.4 25 0.00085 25.8 1.5 16 26-41 44-60 (326)
30 2q37_A OHCU decarboxylase; 2-O 27.2 25 0.00087 24.4 1.5 24 70-93 105-128 (181)
31 2vjq_A Formyl-coenzyme A trans 26.7 59 0.002 25.4 3.7 38 3-56 107-145 (428)
32 1x2n_A Homeobox protein pknox1 25.7 52 0.0018 18.6 2.5 24 71-94 12-36 (73)
33 1rws_A Hypothetical protein PF 25.3 55 0.0019 18.9 2.6 29 3-32 31-59 (77)
34 2prd_A Pyrophosphate phosphohy 24.9 34 0.0012 23.7 1.8 21 69-89 120-140 (174)
35 1qez_A Ppase, S-ppase, protein 24.4 34 0.0012 23.7 1.7 22 69-90 119-140 (173)
36 1lgh_B LH II, B800/850, light 24.3 71 0.0024 17.4 2.7 19 68-86 3-21 (45)
37 1k61_A Mating-type protein alp 24.1 60 0.0021 17.5 2.5 22 72-93 4-26 (60)
38 1xk7_A Crotonobetainyl-COA:car 23.8 76 0.0026 24.4 3.8 38 3-55 109-148 (408)
39 1sxv_A Inorganic pyrophosphata 22.7 38 0.0013 23.4 1.7 23 68-90 116-138 (172)
40 3d53_A Inorganic pyrophosphata 22.5 39 0.0013 23.4 1.7 22 69-90 123-144 (173)
41 2k5p_A THis protein, thiamine- 21.5 67 0.0023 18.9 2.5 30 3-32 18-47 (78)
42 2dmn_A Homeobox protein TGIF2L 21.1 54 0.0018 19.3 2.0 24 71-94 12-36 (83)
43 1xv2_A ALDC, hypothetical prot 21.1 66 0.0023 23.2 2.8 31 2-33 25-61 (237)
44 3k2a_A Homeobox protein MEIS2; 20.7 53 0.0018 18.5 1.8 23 72-94 4-27 (67)
45 4epz_A Transcription anti-term 20.6 68 0.0023 22.1 2.6 27 68-94 131-157 (162)
46 3q46_A TT-ippase; inorganic py 20.1 48 0.0016 23.0 1.8 22 69-90 121-142 (178)
No 1
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=100.00 E-value=2.7e-42 Score=228.84 Aligned_cols=99 Identities=83% Similarity=1.293 Sum_probs=94.2
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccccccccCchHHHHhhcCCCCCCCCCCCCCCCHHHHhh
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGV 80 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~~~aG~DaT~~f~~~~~~~~~~~~~~~~L~~~e~~~ 80 (99)
|.||++||++|||.++++||||||+|+|||||++..+|||||+|..+||+|||++|++++|+++++++|+++|+++|++.
T Consensus 3 ~~~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~~~~~AG~DaT~~f~~~~~~~~~l~~dl~~L~~~e~~~ 82 (102)
T 1j03_A 3 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINT 82 (102)
T ss_dssp CCCCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSSTTTTTTTSBCHHHHHHTCCCSSSCCSSCSSCCHHHHHH
T ss_pred cccCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCcccccccchHHHHHHHcCCChhhccCcccCCCHHHHHH
Confidence 57999999999998756689999999999999965789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceEeC
Q 034288 81 LSDWEKKFEAKYPVVGRVV 99 (99)
Q Consensus 81 l~~W~~~~~~kY~~VG~lv 99 (99)
|++|+++|++|||+||+|+
T Consensus 83 l~~W~~~f~~kY~~VG~l~ 101 (102)
T 1j03_A 83 LNDWETKFEAKYPVVGRVV 101 (102)
T ss_dssp HHHHHHHHHTTSCEEECCC
T ss_pred HHHHHHHHhccCCeeeEEe
Confidence 9999999999999999986
No 2
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=99.76 E-value=2.5e-19 Score=114.92 Aligned_cols=58 Identities=31% Similarity=0.396 Sum_probs=50.3
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccc--cccccCchHHHHhhcCCC
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAY--AMFAGKDASRALAKMSKN 62 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y--~~~aG~DaT~~f~~~~~~ 62 (99)
|.||++||++|++.+ ++||+|+|+|||||+ +...||||.. ..+||+|||++|....|+
T Consensus 7 ~~~t~~ev~~h~~~~---~~wv~i~g~VYDvT~-f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs 66 (88)
T 2ibj_A 7 KYFTRAEVAKNNTKD---KNWFIIHNNVYDVTA-FLNEHPGGEEVLIEQAGKDATEHFEDVGHS 66 (88)
T ss_dssp CEECHHHHHTSEETT---EEEEEETTEEEECGG-GTTTCTTCSHHHHTTTTEECHHHHHHHTCC
T ss_pred CccCHHHHHHhCCCC---CEEEEECCEEEECCc-chhhCcCHHHHHHHhCCCcchHHHHHcCCC
Confidence 469999999999865 899999999999998 5568999984 469999999999976555
No 3
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=99.74 E-value=1.8e-18 Score=109.65 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=48.0
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCc-cccccccCchHHH--HhhcC
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGG-AYAMFAGKDASRA--LAKMS 60 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg-~y~~~aG~DaT~~--f~~~~ 60 (99)
|.||++||++|++.+ ++||+|+|+|||||+ +..+|||| .+..+||+|||++ |....
T Consensus 4 ~~~t~~ev~~h~~~~---~~wv~i~g~VYDvT~-f~~~HPGG~~i~~~aG~D~T~~~~F~~~h 62 (82)
T 1x3x_A 4 KKYTKEEVAKHNTQN---DLWIIYDGEVHDMTS-FYKEHPGGKVILNKAGQDATSVLKTLAPH 62 (82)
T ss_dssp CEECHHHHHTCEETT---EEEEEETTEEEECGG-GGGGCTTGGGGGGGTTSBCHHHHHHSHHH
T ss_pred CccCHHHHHhhCCCC---CEEEEECCEEEECCc-chhhCcChhhhhhhCCCCCchhhhhhccc
Confidence 569999999999976 799999999999998 55689999 3346999999999 87554
No 4
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=99.73 E-value=1.3e-18 Score=112.97 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=50.8
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccc--cccccCchHHHHhhcCCC
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAY--AMFAGKDASRALAKMSKN 62 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y--~~~aG~DaT~~f~~~~~~ 62 (99)
|.||++||++||+.+ +|||+|+|+|||||+ +..+||||.. ..+||+|||++|....|+
T Consensus 5 ~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~-f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs 64 (93)
T 1cyo_A 5 KYYTLEEIQKHNNSK---STWLILHYKVYDLTK-FLEEHPGGEEVLREQAGGDATENFEDVGHS 64 (93)
T ss_dssp CEECHHHHTTCEETT---EEEEEETTEEEECTT-TTTTCTTCSHHHHHHTTSBCHHHHHHTTCC
T ss_pred CccCHHHHHhhCCCC---CEEEEECCEEEECCC-cchhCcChHHHHHHhcCccchHHHHHcCCC
Confidence 469999999999876 799999999999998 6668999984 469999999999976665
No 5
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=99.72 E-value=2.4e-18 Score=111.57 Aligned_cols=58 Identities=28% Similarity=0.415 Sum_probs=50.8
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccc--cccccCchHHHHhhcCCC
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAY--AMFAGKDASRALAKMSKN 62 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y--~~~aG~DaT~~f~~~~~~ 62 (99)
+.||++||++||+.+ +|||+|+|+|||||+ +...||||.. ..+||+|||.+|....|+
T Consensus 10 ~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~-f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs 69 (92)
T 3ner_A 10 TYYRLEEVAKRNSLK---ELWLVIHGRVYDVTR-FLNEHPGGEEVLLEQAGVDASESFEDVGHS 69 (92)
T ss_dssp CEECHHHHTTCEETT---EEEEEETTEEEECGG-GTTTCTTCSHHHHTTTTSBCHHHHHHTTCC
T ss_pred CeeCHHHHHhhCCCC---CEEEEECCEEEEccc-ccccCCCHHHHHHHhcCCcchHHHHHcCCC
Confidence 469999999999975 899999999999998 6668999984 469999999999976565
No 6
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=99.72 E-value=5e-18 Score=109.39 Aligned_cols=54 Identities=28% Similarity=0.467 Sum_probs=48.2
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCcc--ccccccCchHHHHhh
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGA--YAMFAGKDASRALAK 58 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~--y~~~aG~DaT~~f~~ 58 (99)
|.||++||++|++.+ ++||+|+|+|||||+ +..+||||. +..+||+|||++|..
T Consensus 8 ~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~-f~~~HPGG~~~i~~~aG~DaT~~f~~ 63 (90)
T 1cxy_A 8 PVFTLEQVAEHHSPD---DCWMAIHGKVYDLTP-YVPNHPGPAGMMLVWCGQESTEAWET 63 (90)
T ss_dssp CBCCHHHHTTCEETT---EEEEEETTEEEECTT-TGGGCCSSTTTTGGGTTSBCHHHHHH
T ss_pred CCcCHHHHHHhcCCC---CEEEEECCEEEECcc-chhhCcChHHHHHHHCCcchhHHHhh
Confidence 579999999999975 799999999999998 666899997 457999999999984
No 7
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=99.70 E-value=2.2e-18 Score=110.95 Aligned_cols=58 Identities=28% Similarity=0.484 Sum_probs=50.4
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCcc--ccccccCchHHHHhhcCCC
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGA--YAMFAGKDASRALAKMSKN 62 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~--y~~~aG~DaT~~f~~~~~~ 62 (99)
+.||++||++||+.+ ++||+|+|+|||||+ +...||||. +..+||+|||++|....++
T Consensus 6 ~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~-f~~~HPGG~~~l~~~aG~DaT~~F~~~h~~ 65 (88)
T 3lf5_A 6 IEVTEEELKKHNKKD---DCWICIRGFVYNVSP-YMEYHPGGEDELMRAAGSDGTELFDQVHRW 65 (88)
T ss_dssp EEECHHHHHHCEETT---EEEEEETTEEEECGG-GTTTCTTCHHHHHTTTTEECHHHHHHHHTT
T ss_pred CEeCHHHHHhhCCCC---CEEEEECCEEEECcc-chhhCcChhhhhhhcCCCcchHHHHHHCCc
Confidence 358999999999875 899999999999998 556899998 4579999999999876554
No 8
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=99.69 E-value=5.7e-18 Score=112.08 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=50.3
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccc--cccccCchHHHHhhcCCC
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAY--AMFAGKDASRALAKMSKN 62 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y--~~~aG~DaT~~f~~~~~~ 62 (99)
+.||++||++||+.+ +|||+|+|+|||||. +..+||||.. ..+||+|||.+|....|+
T Consensus 9 ~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~-f~~~HPGG~~~i~~~aGkDaT~~F~~~~Hs 68 (104)
T 1hko_A 9 KYYTLEEIQKHNNSK---STWLILHYKVYDLTK-FLEEHPGGEEVLREQAGGDATENFEDVGHS 68 (104)
T ss_dssp EEECHHHHHHCBSSS---SBEEEETTEEEEHHH-HSSSSSSCSHHHHTTCSEECHHHHTTTTCC
T ss_pred CccCHHHHHHhcCCC---CEEEEECCEEEECCc-chhhCcChHHHHHHhcCccchHHHHHcCCC
Confidence 358999999999876 799999999999998 5568999984 469999999999876555
No 9
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=99.66 E-value=9e-18 Score=112.59 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=50.5
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCcc--ccccccCchHHHHhhcCCCC
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGA--YAMFAGKDASRALAKMSKND 63 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~--y~~~aG~DaT~~f~~~~~~~ 63 (99)
|.||++||++|++.+ ++||+|+|+|||||+ +...||||. +..+||+|||++|....|+.
T Consensus 24 ~~~t~~Ev~~h~~~~---d~wvvi~G~VYDVT~-fl~~HPGG~~~l~~~aGkDaT~~F~~~~Hs~ 84 (112)
T 2keo_A 24 TLVRIADLENHNNDG---GFWTVIDGKVYDIKD-FQTQSLTENSILAQFAGEDPVVALEAALQFE 84 (112)
T ss_dssp CEECHHHHHHHHHHT---CCEEEETTEEEEHHH-HHHHHTSTTSTTGGGTTSCHHHHHHHHHHST
T ss_pred CccCHHHHHHhcCCC---CEEEEECCEEEECCc-chhhCCCchhhhhhhCCccchHHHhHcCCCH
Confidence 469999999999865 799999999999998 556899998 45699999999999754553
No 10
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=99.56 E-value=7.8e-16 Score=97.56 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=44.5
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccc--cccccCchHHHHhh
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAY--AMFAGKDASRALAK 58 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y--~~~aG~DaT~~f~~ 58 (99)
|.||++||++||+.+ + +|||+|+|+|||||+ +...||||.. ..+||+| |.+|..
T Consensus 5 ~~~t~~ev~~h~~~~-~-~~wv~i~g~VYDvt~-f~~~HPGG~~~il~~aG~D-t~~f~~ 60 (82)
T 1mj4_A 5 HIYTKEEVSSHTSPE-T-GIWVTLGSEVFDVTE-FVDLHPGGPSKLMLAAGGP-LEPFWA 60 (82)
T ss_dssp CBCCCC-CTTCEETT-T-EEEEEETTEEEECTT-TGGGSTTCHHHHHTTTTSB-SHHHHT
T ss_pred CccCHHHHHHhcCCC-C-CeEEEECCEEEEchH-HHHhCCCHhHHHHHHcCCC-hHHHHh
Confidence 569999999999875 2 599999999999998 6678999953 3599999 568874
No 11
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=99.44 E-value=3.4e-14 Score=114.56 Aligned_cols=58 Identities=29% Similarity=0.462 Sum_probs=50.9
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCcccc--ccccCchHHHHhhcCCCC
Q 034288 1 MEFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYA--MFAGKDASRALAKMSKND 63 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~--~~aG~DaT~~f~~~~~~~ 63 (99)
+.||++||++||+.+ +|||+|+|+|||||+ +..+||||... .+||+|||.+|... |+.
T Consensus 9 ~~~t~~ev~~h~~~~---~~wv~i~g~VYDvt~-f~~~HPGG~~~i~~~aG~DaT~~f~~~-H~~ 68 (511)
T 1kbi_A 9 QKISPAEVAKHNKPD---DCWVVINGYVYDLTR-FLPNHPGGQDVIKFNAGKDVTAIFEPL-HAP 68 (511)
T ss_dssp CCBCTTHHHHCEETT---EEEEEETTEEEECTT-TGGGCTTCHHHHHTTTTSBCHHHHGGG-SCT
T ss_pred CccCHHHHHHhCCCC---CEEEEECCEEEECCc-chhhCcChHHHHHHHcCcchhhhhhhc-CCH
Confidence 569999999999976 799999999999998 77799999844 69999999999877 543
No 12
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=99.21 E-value=5.6e-12 Score=100.97 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=46.3
Q ss_pred CCCCHHHHhhhcCCCCCCC-eEEEEcCeEEeecccCceeCCCcc--ccccccCchHHHHhh
Q 034288 1 MEFTPAQLIQYNGTDPSKP-IYVAIKGRVFDVTTGKSFYGPGGA--YAMFAGKDASRALAK 58 (99)
Q Consensus 1 r~~T~~EL~~~~g~~~~~~-~~vai~G~VyDVT~~~~~y~pgg~--y~~~aG~DaT~~f~~ 58 (99)
+.||++||++||..+ + |||+|+|+|||||+ +...||||. ...+||+| |.+|..
T Consensus 5 ~~~t~~Ev~~H~~~~---d~~Wvii~g~VYDvT~-fl~~HPGG~~~il~~aG~D-T~~f~~ 60 (466)
T 1sox_A 5 PEYTREEVGRHRSPE---ERVWVTHGTDVFDVTD-FVELHPGGPDKILLAAGGA-LEPFWA 60 (466)
T ss_dssp CEECHHHHTTCEETT---TEEEEEETTEEEECTT-TTTTSTTCHHHHGGGTTSB-SHHHHH
T ss_pred CeeCHHHHHHhcCCC---CceEEEECCEEEechH-hHhhCcCCcccchhhcCCc-cccccc
Confidence 469999999999875 5 99999999999998 777899994 45699999 999975
No 13
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=48.54 E-value=20 Score=17.19 Aligned_cols=19 Identities=32% Similarity=0.737 Sum_probs=15.9
Q ss_pred CCCCHHHHhhHHHHHHHHh
Q 034288 71 DGLTEKEMGVLSDWEKKFE 89 (99)
Q Consensus 71 ~~L~~~e~~~l~~W~~~~~ 89 (99)
.+|+..++..+..|++...
T Consensus 2 rgltsrdrrriarwekria 20 (26)
T 1hji_B 2 RGLTSRDRRRIARWEKRIA 20 (26)
T ss_dssp CSSCHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHH
Confidence 4788999999999998653
No 14
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=45.81 E-value=27 Score=19.61 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=21.4
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEee
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDV 31 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDV 31 (99)
.|..+|.+.-+.. ...+-|++||.+-.-
T Consensus 16 ~tv~~ll~~l~~~-~~~v~vavN~~~v~~ 43 (66)
T 1f0z_A 16 QTVHELLEQLDQR-QAGAALAINQQIVPR 43 (66)
T ss_dssp CCHHHHHHHHTCC-CSSEEEEETTEEECH
T ss_pred CcHHHHHHHcCCC-CCCEEEEECCEECCc
Confidence 5788888876655 457889999999654
No 15
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=45.71 E-value=18 Score=21.21 Aligned_cols=29 Identities=17% Similarity=0.023 Sum_probs=22.6
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeec
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVT 32 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT 32 (99)
.|+.+|.+.-+-+ .+.+-|++||.|-.=+
T Consensus 15 ~Tl~~LL~~l~~~-~~~vAV~vNg~iVpr~ 43 (73)
T 2kl0_A 15 ASVAALMTELDCT-GGHFAVALNYDVVPRG 43 (73)
T ss_dssp SBHHHHHHHTTCC-SSSCEEEESSSEECHH
T ss_pred CcHHHHHHHcCCC-CCcEEEEECCEECChH
Confidence 5888988877765 4568899999996554
No 16
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=43.74 E-value=24 Score=21.60 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=22.4
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeec
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVT 32 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT 32 (99)
.|+.+|.+.-+.+ ...+.|+|||.+-.-+
T Consensus 37 ~Tv~dLL~~L~~~-~~~vaVavNg~iV~~~ 65 (87)
T 1tyg_B 37 GTIQDLLASYQLE-NKIVIVERNKEIIGKE 65 (87)
T ss_dssp CBHHHHHHHTTCT-TSCCEEEETTEEECGG
T ss_pred CcHHHHHHHhCCC-CCCEEEEECCEECChh
Confidence 5888888877655 4568899999996654
No 17
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=42.77 E-value=32 Score=19.64 Aligned_cols=28 Identities=7% Similarity=-0.020 Sum_probs=21.3
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEee
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDV 31 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDV 31 (99)
.|..+|.+.-+.+ ...+.|++||.+-+-
T Consensus 24 ~tv~~Ll~~l~~~-~~~v~vavN~~~v~~ 51 (70)
T 1ryj_A 24 RRIKDVLGELEIP-IETVVVKKNGQIVID 51 (70)
T ss_dssp CBHHHHHHHTTCC-TTTEEEEETTEECCT
T ss_pred CcHHHHHHHhCCC-CCCEEEEECCEECCC
Confidence 5788888876655 456889999998543
No 18
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A {Mycobacterium tuberculosis}
Probab=41.34 E-value=27 Score=26.48 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=28.7
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccccccccCchHHH
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRA 55 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~~~aG~DaT~~ 55 (99)
+..++|++-|-. =||++|.| ||..|+|...+|.|..-.
T Consensus 96 l~ye~L~~~nP~----LIy~sisG-----------fG~~GP~a~~pg~D~~~q 133 (359)
T 2g04_A 96 IGPDDCASVNPR----LIFARITG-----------WGQDGPLASTAGHDINYL 133 (359)
T ss_dssp CSHHHHHHHCTT----CEEEEEES-----------SCSSSSGGGSCCCHHHHH
T ss_pred CCHHHHHHhCCC----eEEEEEec-----------CCCCCCCcCCCCchHHHH
Confidence 567888886643 37776654 788999999999997754
No 19
>2yim_A Probable alpha-methylacyl-COA racemase MCR (2-methylacyl-COA racemase) (2-arylpropionyl-COA...; isomerase, methyl-COA racemase; HET: MC4; 1.41A {Mycobacterium tuberculosis} PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* 2gci_A*
Probab=41.30 E-value=26 Score=26.58 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=28.7
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccccccccCchHHH
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRA 55 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~~~aG~DaT~~ 55 (99)
+..++|++-|-. =||++|.| ||..|+|...+|.|.+-.
T Consensus 94 l~ye~L~~~nP~----LIy~sisG-----------fG~~GP~~~~pg~D~~~q 131 (360)
T 2yim_A 94 LGPEECAKVNDR----LIYARMTG-----------WGQTGPRSQQAGHDINYI 131 (360)
T ss_dssp CSHHHHHHHCTT----CEEEEEES-----------SCSSSTTTTSCCCHHHHH
T ss_pred CCHHHHHHhCCC----eEEEEEec-----------CCCCCCCCCCCCcHHHHH
Confidence 567788876643 37777654 788999999999998765
No 20
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=35.73 E-value=27 Score=19.48 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=22.0
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeec
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVT 32 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT 32 (99)
.|..+|.+.-+.. ...+-|++||.+-+-+
T Consensus 14 ~tv~~ll~~l~~~-~~~v~vavN~~~v~~~ 42 (64)
T 2cu3_A 14 KTLKEVLEEMGVE-LKGVAVLLNEEAFLGL 42 (64)
T ss_dssp CCHHHHHHHHTBC-GGGEEEEETTEEEEGG
T ss_pred CcHHHHHHHcCCC-CCcEEEEECCEECCcc
Confidence 4778888776654 4568899999997655
No 21
>1q7e_A Hypothetical protein YFDW; structural genomics, intertwined dimer, PSI, protein structu initiative; HET: MSE; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A* 1pt7_A 1pt5_A 1pt8_A*
Probab=35.34 E-value=37 Score=26.49 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=28.8
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccccccccCchHHH
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRA 55 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~~~aG~DaT~~ 55 (99)
+..++|++-|-. =||++|.| ||..|+|...+|.|.+-.
T Consensus 109 L~ye~L~~~NP~----LIy~sisG-----------fG~~GP~a~~pg~D~~~q 146 (428)
T 1q7e_A 109 FTWEHIQEINPR----LIFGSIKG-----------FDECSPYVNVKAYENVAQ 146 (428)
T ss_dssp CCHHHHHHHCTT----CEEEEEES-----------SCTTSTTTTSCCCHHHHH
T ss_pred CCHHHHHHhCCC----eEEEEEee-----------CCCCCCCCCCCCcHHHHH
Confidence 567888887643 37776654 888999999999998654
No 22
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A*
Probab=34.70 E-value=20 Score=24.57 Aligned_cols=25 Identities=8% Similarity=0.286 Sum_probs=21.6
Q ss_pred CCCCCCHHHHhhHHHHHHHHhccCC
Q 034288 69 SLDGLTEKEMGVLSDWEKKFEAKYP 93 (99)
Q Consensus 69 ~~~~L~~~e~~~l~~W~~~~~~kY~ 93 (99)
.+..+++.+...|.+|-..|++||-
T Consensus 92 gl~~~~~~~~~~l~~lN~~Y~~kFG 116 (174)
T 2o70_A 92 GMTTLDSAEIVHMYRLNSEYKERFG 116 (174)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHHS
T ss_pred ccccCCHHHHHHHHHHHHHHHHHCC
Confidence 3678899999999999999998763
No 23
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural GENO PSI-2, protein structure initiative; 2.60A {Agrobacterium tumefaciens str} SCOP: a.288.1.1
Probab=34.69 E-value=22 Score=24.16 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCCCCCCCHHHHhhHHHHHHHHhccCC
Q 034288 67 TPSLDGLTEKEMGVLSDWEKKFEAKYP 93 (99)
Q Consensus 67 ~~~~~~L~~~e~~~l~~W~~~~~~kY~ 93 (99)
...+..+++.+...|.++-..|++||-
T Consensus 86 ~agl~~~~~~~~~~l~~lN~~Ye~kFG 112 (165)
T 2o8i_A 86 GAGLDRLSPQEHARFTQLNSAYTEKFG 112 (165)
T ss_dssp --CTTSCCHHHHHHHHHHHHHHHHHHS
T ss_pred hhccccCCHHHHHHHHHHHHHHHHHcC
Confidence 335778999999999999999998763
No 24
>4ed9_A CAIB/BAIF family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: NHE; 1.95A {Brucella suis}
Probab=34.54 E-value=38 Score=25.88 Aligned_cols=38 Identities=34% Similarity=0.442 Sum_probs=28.9
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccccccccCchHHH
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRA 55 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~~~aG~DaT~~ 55 (99)
+..++|++-|-. =||++|.| ||..|+|...+|.|.+-.
T Consensus 115 l~ye~L~~~nP~----LIy~sisG-----------fG~~GP~a~~~g~D~~~q 152 (385)
T 4ed9_A 115 LDYESLKAINPQ----LIYCSITG-----------FGHTGPYAERAGYDFMIQ 152 (385)
T ss_dssp CSHHHHHHHCTT----CEEEEEES-----------SCSSSTTTTSCCCHHHHH
T ss_pred CCHHHHHHhCCC----eEEEEEEe-----------CCCCCCCCCCCCcHHHHH
Confidence 567888887643 37777654 888999999999998754
No 25
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=34.49 E-value=18 Score=17.64 Aligned_cols=18 Identities=28% Similarity=0.647 Sum_probs=14.6
Q ss_pred CHHHHhhHHHHHHHHhcc
Q 034288 74 TEKEMGVLSDWEKKFEAK 91 (99)
Q Consensus 74 ~~~e~~~l~~W~~~~~~k 91 (99)
++-|++-+-.|..|.++|
T Consensus 8 sevqlemitawkkfveek 25 (28)
T 1nwd_B 8 SEVQLEMITAWKKFVEEK 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456788999999998764
No 26
>3ubm_A COAT2, formyl-COA:oxalate COA-transferase; HET: COA; 1.99A {Acetobacter aceti}
Probab=30.87 E-value=47 Score=26.03 Aligned_cols=38 Identities=29% Similarity=0.394 Sum_probs=28.9
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccccccccCchHHH
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRA 55 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y~~~aG~DaT~~ 55 (99)
+..++|++-|-. =||++|.| ||..|+|...+|.|.+-.
T Consensus 133 L~ye~L~~~NP~----LIy~sisG-----------fG~~GP~a~rpg~D~~~q 170 (456)
T 3ubm_A 133 FTWEYLQQLNPR----LIYGTVKG-----------FGENSPWAGVSAYENVAQ 170 (456)
T ss_dssp CCHHHHHHHCTT----CEEEEEES-----------SCTTCTTTTSCCCHHHHH
T ss_pred CCHHHHHHhCCC----cEEEEEEe-----------cCCCCCCCCCCCcHHHHH
Confidence 567888887643 37777654 888999999999998753
No 27
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=27.82 E-value=30 Score=21.53 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.2
Q ss_pred CCCCCCHHHHhhHHHHHHHHhc
Q 034288 69 SLDGLTEKEMGVLSDWEKKFEA 90 (99)
Q Consensus 69 ~~~~L~~~e~~~l~~W~~~~~~ 90 (99)
.+..|++++.+.|.+|.+.++.
T Consensus 66 ~w~~l~~~~K~~L~~~~~~lk~ 87 (93)
T 3mab_A 66 RWHGLDEAKKIELKKFHQSLEG 87 (93)
T ss_dssp CGGGSCHHHHHHHHHHHHHHCC
T ss_pred cHHHCCHHHHHHHHHHHHHhhc
Confidence 4678999999999999998863
No 28
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=27.55 E-value=39 Score=28.43 Aligned_cols=25 Identities=4% Similarity=0.104 Sum_probs=22.2
Q ss_pred CCCCCCCCCHHHHhhHHHHHHHHhc
Q 034288 66 VTPSLDGLTEKEMGVLSDWEKKFEA 90 (99)
Q Consensus 66 ~~~~~~~L~~~e~~~l~~W~~~~~~ 90 (99)
++.|+..|+++|++.+++|.++|++
T Consensus 604 ~eldl~~ls~~e~~~~~~~i~~YK~ 628 (745)
T 3mi6_A 604 YELDITKMAPTELDQVKKQVAFYKC 628 (745)
T ss_dssp EESCSTTCCHHHHHHHHHHHHHHHH
T ss_pred eeeChhhCCHHHHHHHHHHHHHHHH
Confidence 4458889999999999999999985
No 29
>2wzp_P Lactococcal phage P2 ORF15; baseplate, viral protein; 2.60A {Lactococcus phage P2} PDB: 2x53_S 2x54_S 2x5a_S
Probab=27.41 E-value=25 Score=25.82 Aligned_cols=16 Identities=56% Similarity=1.088 Sum_probs=13.3
Q ss_pred CeEEeecccC-ceeCCC
Q 034288 26 GRVFDVTTGK-SFYGPG 41 (99)
Q Consensus 26 G~VyDVT~~~-~~y~pg 41 (99)
.+|+|||++. .||.|.
T Consensus 44 dkvwdvtngkvrfyqps 60 (326)
T 2wzp_P 44 DKVWDVTNGKVRFYQPS 60 (326)
T ss_dssp CCEEETTTSSEEEECCS
T ss_pred cceEeecCCeEEEecCc
Confidence 6899999975 589886
No 30
>2q37_A OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ureidoimidazoline, plant protein, lyase; HET: 3AL; 2.50A {Arabidopsis thaliana} SCOP: a.288.1.1
Probab=27.22 E-value=25 Score=24.39 Aligned_cols=24 Identities=13% Similarity=0.452 Sum_probs=20.9
Q ss_pred CCCCCHHHHhhHHHHHHHHhccCC
Q 034288 70 LDGLTEKEMGVLSDWEKKFEAKYP 93 (99)
Q Consensus 70 ~~~L~~~e~~~l~~W~~~~~~kY~ 93 (99)
+..+++.+.+.|.++-..|++||-
T Consensus 105 l~~~~~~e~~~L~~LN~~Ye~kFG 128 (181)
T 2q37_A 105 FATTSASALQELAEWNVLYKKKFG 128 (181)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHS
T ss_pred cccCCHHHHHHHHHHHHHHHHHcC
Confidence 567899999999999999998763
No 31
>2vjq_A Formyl-coenzyme A transferase; class III COA transferase; HET: EPE; 1.8A {Oxalobacter formigenes} PDB: 2vjp_A 2vjm_A* 2vjl_A* 2vjk_A* 1p5h_A 1p5r_A* 2vjn_A* 1t4c_A* 2vjo_A* 2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B* 1vgq_A*
Probab=26.73 E-value=59 Score=25.38 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=28.2
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCccc-cccccCchHHHH
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAY-AMFAGKDASRAL 56 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~y-~~~aG~DaT~~f 56 (99)
+..++|++-|-. =||++|.| ||. ||| ...+|.|..-.=
T Consensus 107 L~ye~L~~~NP~----LIy~sisG-----------fG~-GP~~a~~pg~D~~~qA 145 (428)
T 2vjq_A 107 FTWEYIQELNPR----VILASVKG-----------YAE-GHANEHLKVYENVAQC 145 (428)
T ss_dssp CCHHHHHHHCTT----CEEEEEES-----------SCT-TSTTTTSCCCHHHHHH
T ss_pred CCHHHHHhhCCC----eEEEEeec-----------CCC-CCCcCCCCCcHHHHHH
Confidence 567888887643 37776654 888 999 999999987653
No 32
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=25.69 E-value=52 Score=18.63 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=18.4
Q ss_pred CCCCHHHHhhHHHHHHH-HhccCCc
Q 034288 71 DGLTEKEMGVLSDWEKK-FEAKYPV 94 (99)
Q Consensus 71 ~~L~~~e~~~l~~W~~~-~~~kY~~ 94 (99)
.-++..++..|+.|... ....||-
T Consensus 12 ~~~~~~q~~~Le~~f~~~~~~~yp~ 36 (73)
T 1x2n_A 12 GVLPKHATNVMRSWLFQHIGHPYPT 36 (73)
T ss_dssp CCCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCC
Confidence 45889999999999864 4567773
No 33
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=25.29 E-value=55 Score=18.90 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=21.1
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeec
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVT 32 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT 32 (99)
.|..+|.+.-+.+ ...+-|+|||++-+-+
T Consensus 31 ~Tv~dLl~~L~~~-~~~v~VavNg~~v~~~ 59 (77)
T 1rws_A 31 MKVRDILRAVGFN-TESAIAKVNGKVVLED 59 (77)
T ss_dssp CCHHHHHHTTTCS-SCSSCEEETTEEECSS
T ss_pred CcHHHHHHHhCCC-CcCEEEEECCEECCCC
Confidence 4788888876654 4468899999986543
No 34
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=24.86 E-value=34 Score=23.66 Aligned_cols=21 Identities=5% Similarity=0.199 Sum_probs=19.3
Q ss_pred CCCCCCHHHHhhHHHHHHHHh
Q 034288 69 SLDGLTEKEMGVLSDWEKKFE 89 (99)
Q Consensus 69 ~~~~L~~~e~~~l~~W~~~~~ 89 (99)
|+++|++..++.+.+|.+.|+
T Consensus 120 di~Dl~~~~l~~i~~fF~~YK 140 (174)
T 2prd_A 120 DIGDVPEGVKQEIQHFFETYK 140 (174)
T ss_dssp SGGGSCHHHHHHHHHHHHHTT
T ss_pred ChHHCCHHHHHHHHHHHHHhc
Confidence 788999999999999999986
No 35
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=24.41 E-value=34 Score=23.66 Aligned_cols=22 Identities=5% Similarity=0.277 Sum_probs=19.9
Q ss_pred CCCCCCHHHHhhHHHHHHHHhc
Q 034288 69 SLDGLTEKEMGVLSDWEKKFEA 90 (99)
Q Consensus 69 ~~~~L~~~e~~~l~~W~~~~~~ 90 (99)
|+++|++..++.+.+|.+.|+.
T Consensus 119 di~Dl~~~~l~~i~~fF~~YK~ 140 (173)
T 1qez_A 119 DINDLPQATKNKIVHFFEHYKE 140 (173)
T ss_dssp SGGGSCHHHHHHHHHHHHHTTT
T ss_pred ChHHCCHHHHHHHHHHHHHhcc
Confidence 7889999999999999999973
No 36
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=24.31 E-value=71 Score=17.44 Aligned_cols=19 Identities=47% Similarity=0.441 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHhhHHHHHH
Q 034288 68 PSLDGLTEKEMGVLSDWEK 86 (99)
Q Consensus 68 ~~~~~L~~~e~~~l~~W~~ 86 (99)
..+++||++|.+.+.....
T Consensus 3 ~s~tGLT~~EA~EfH~~~~ 21 (45)
T 1lgh_B 3 RSLSGLTEEEAIAVHDQFK 21 (45)
T ss_dssp CCSSSCCHHHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHH
Confidence 3678999999998876653
No 37
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=24.11 E-value=60 Score=17.53 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=16.2
Q ss_pred CCCHHHHhhHHHHHHH-HhccCC
Q 034288 72 GLTEKEMGVLSDWEKK-FEAKYP 93 (99)
Q Consensus 72 ~L~~~e~~~l~~W~~~-~~~kY~ 93 (99)
-++..++..|+.|... +...||
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp 26 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYL 26 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCc
Confidence 4788999999999753 335676
No 38
>1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1xk6_A 1xvt_A* 1xvu_A* 1xvv_A* 1xa3_A* 1xa4_A*
Probab=23.82 E-value=76 Score=24.38 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=27.0
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeecccCceeCCCcc--ccccccCchHHH
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGA--YAMFAGKDASRA 55 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT~~~~~y~pgg~--y~~~aG~DaT~~ 55 (99)
+..++|++-|-. =||++|.| ||..|+ |...+|.|.+-.
T Consensus 109 L~ye~L~~~nP~----LIy~sisG-----------fG~~GP~p~a~~pg~D~~~q 148 (408)
T 1xk7_A 109 ITDEVLWQHNPK----LVIAHLSG-----------FGQYGTEEYTNLPAYNTIAQ 148 (408)
T ss_dssp CCHHHHHHHCTT----CEEEEEES-----------SCSSSCTTTTTSCCCHHHHH
T ss_pred CCHHHHHHhCCC----eEEEEeee-----------cCCCCCccccCCCCcHHHHH
Confidence 567888876643 37766554 777774 999999997654
No 39
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=22.72 E-value=38 Score=23.43 Aligned_cols=23 Identities=4% Similarity=0.239 Sum_probs=20.2
Q ss_pred CCCCCCCHHHHhhHHHHHHHHhc
Q 034288 68 PSLDGLTEKEMGVLSDWEKKFEA 90 (99)
Q Consensus 68 ~~~~~L~~~e~~~l~~W~~~~~~ 90 (99)
.++++|++..++.+.+|.+.|+.
T Consensus 116 ~di~Dlp~~~l~~I~~fF~~YK~ 138 (172)
T 1sxv_A 116 QDIGDVPAFELDAIKHFFVHYKD 138 (172)
T ss_dssp CSGGGSCHHHHHHHHHHHHHTTT
T ss_pred CChHHCCHHHHHHHHHHHHHhcC
Confidence 37889999999999999999973
No 40
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=22.50 E-value=39 Score=23.38 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.8
Q ss_pred CCCCCCHHHHhhHHHHHHHHhc
Q 034288 69 SLDGLTEKEMGVLSDWEKKFEA 90 (99)
Q Consensus 69 ~~~~L~~~e~~~l~~W~~~~~~ 90 (99)
++++|++..++.+.+|.+.|+.
T Consensus 123 di~Dl~~~~l~~i~~fF~~YK~ 144 (173)
T 3d53_A 123 ELDDLCEMLKKRIVHFFEHYKD 144 (173)
T ss_dssp SGGGSCHHHHHHHHHHHHHTTT
T ss_pred ChhHCCHHHHHHHHHHHHHHcC
Confidence 7889999999999999999873
No 41
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=21.48 E-value=67 Score=18.90 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=20.4
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEeec
Q 034288 3 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVT 32 (99)
Q Consensus 3 ~T~~EL~~~~g~~~~~~~~vai~G~VyDVT 32 (99)
.|+.+|.+.-+-+..+.+-|++||.|-.=+
T Consensus 18 ~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~ 47 (78)
T 2k5p_A 18 LNVTELLSALKVAQAEYVTVELNGEVLERE 47 (78)
T ss_dssp EEHHHHHHHHTCSCTTTCCEEETTEECCTT
T ss_pred CcHHHHHHHcCCCCCCcEEEEECCEECChH
Confidence 578888776664312357799999995433
No 42
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=21.11 E-value=54 Score=19.30 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=18.2
Q ss_pred CCCCHHHHhhHHHHHHH-HhccCCc
Q 034288 71 DGLTEKEMGVLSDWEKK-FEAKYPV 94 (99)
Q Consensus 71 ~~L~~~e~~~l~~W~~~-~~~kY~~ 94 (99)
.-++..++..|..|... ....||-
T Consensus 12 ~~~s~~q~~~L~~~f~~~~~~pYPs 36 (83)
T 2dmn_A 12 GNLPAESVKILRDWMYKHRFKAYPS 36 (83)
T ss_dssp SSCCHHHHHHHHHHHHHTTTTCCCC
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCC
Confidence 35889999999999754 4457773
No 43
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=21.09 E-value=66 Score=23.21 Aligned_cols=31 Identities=10% Similarity=0.243 Sum_probs=21.6
Q ss_pred CCCHHHHhhhcCC-----C-CCCCeEEEEcCeEEeecc
Q 034288 2 EFTPAQLIQYNGT-----D-PSKPIYVAIKGRVFDVTT 33 (99)
Q Consensus 2 ~~T~~EL~~~~g~-----~-~~~~~~vai~G~VyDVT~ 33 (99)
.+|.+||.+|--- + -++. .|+++|++|-+.+
T Consensus 25 ~~ti~eLl~hGdfGiGTf~~LDGE-miilDG~~Yq~~~ 61 (237)
T 1xv2_A 25 TATINELLEHGNLGIATLTGSDGE-VIFLDGKAYHANE 61 (237)
T ss_dssp CEEHHHHHTTCSEEEEEEGGGEEE-EEEETTEEEEECT
T ss_pred cccHHHHHhCCCceEecccCCcee-EEEECCEEEEEcC
Confidence 4688999988310 0 0112 7999999999986
No 44
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=20.75 E-value=53 Score=18.54 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=15.9
Q ss_pred CCCHHHHhhHHHHHH-HHhccCCc
Q 034288 72 GLTEKEMGVLSDWEK-KFEAKYPV 94 (99)
Q Consensus 72 ~L~~~e~~~l~~W~~-~~~~kY~~ 94 (99)
-++..+...|..|.. +....||-
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~ 27 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPS 27 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCC
Confidence 367889999999975 44567773
No 45
>4epz_A Transcription anti-terminator antagonist UPXZ; transcription regulation, antagonist of transcription anti- termination; HET: MSE; 1.68A {Bacteroides uniformis atcc 8492}
Probab=20.59 E-value=68 Score=22.13 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=23.5
Q ss_pred CCCCCCCHHHHhhHHHHHHHHhccCCc
Q 034288 68 PSLDGLTEKEMGVLSDWEKKFEAKYPV 94 (99)
Q Consensus 68 ~~~~~L~~~e~~~l~~W~~~~~~kY~~ 94 (99)
++-..||.+|.+.+.+-..+-+..||+
T Consensus 131 W~~~~Lt~eq~e~ieel~n~eeNpYP~ 157 (162)
T 4epz_A 131 WNISDLTDEQKEIIEELRNFEENQYPW 157 (162)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHTSCGG
T ss_pred cccccCCHHHHHHHHHHhccccCCCch
Confidence 456789999999999998888889986
No 46
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=20.12 E-value=48 Score=22.99 Aligned_cols=22 Identities=0% Similarity=0.277 Sum_probs=19.9
Q ss_pred CCCCCCHHHHhhHHHHHHHHhc
Q 034288 69 SLDGLTEKEMGVLSDWEKKFEA 90 (99)
Q Consensus 69 ~~~~L~~~e~~~l~~W~~~~~~ 90 (99)
|+++|.+..++.+.+|.+.|+.
T Consensus 121 di~Dl~~~~l~~i~~fF~~YK~ 142 (178)
T 3q46_A 121 DISDVPKAFLDEIAHFFQRYKE 142 (178)
T ss_dssp SGGGSCHHHHHHHHHHHHHTTG
T ss_pred ChHHCCHHHHHHHHHHHHHhcC
Confidence 7889999999999999999874
Done!