BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034289
         (99 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
           Receptor Tyrosine Kinase, Kit
          Length = 524

 Score = 30.0 bits (66), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 70  DNDLPIQCPLPEPSILNVSLK 90
           DND  ++CPL +P + N SLK
Sbjct: 129 DNDTLVRCPLTDPEVTNYSLK 149


>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
           Complex With Stem Cell Factor (Scf)
 pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
           Complex With Stem Cell Factor (Scf)
          Length = 489

 Score = 25.8 bits (55), Expect = 7.3,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 70  DNDLPIQCPLPEPSILNVSLK 90
           D+D  ++CPL +P + + SLK
Sbjct: 104 DSDTLVRCPLTDPEVTSYSLK 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.141    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,244,014
Number of Sequences: 62578
Number of extensions: 51897
Number of successful extensions: 85
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 2
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)