BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034289
         (99 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9UBX1|CATF_HUMAN Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1
          Length = 484

 Score = 32.0 bits (71), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 15/67 (22%)

Query: 33  AVTGAVPGTATTAAAAGAHGIQAAVEFKPVEHPIEPLDNDLPIQCPLPEPSILNVSLKNL 92
           AV G V G    A     + ++A +E        EP  ND P+ C LP      VS K L
Sbjct: 60  AVLGLVRGRVRRAGQGSLYSLEATLE--------EPPCND-PMVCRLP------VSKKTL 104

Query: 93  VCSFEIL 99
           +CSF++L
Sbjct: 105 LCSFQVL 111


>sp|P10721|KIT_HUMAN Mast/stem cell growth factor receptor Kit OS=Homo sapiens GN=KIT
           PE=1 SV=1
          Length = 976

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 70  DNDLPIQCPLPEPSILNVSLK 90
           DND  ++CPL +P + N SLK
Sbjct: 129 DNDTLVRCPLTDPEVTNYSLK 149


>sp|Q76II0|KIT_CALJA Mast/stem cell growth factor receptor Kit OS=Callithrix jacchus
           GN=KIT PE=2 SV=1
          Length = 972

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 70  DNDLPIQCPLPEPSILNVSLK 90
           DND  ++CPL +P + N SLK
Sbjct: 129 DNDTLVRCPLTDPEVTNYSLK 149


>sp|Q8R4U7|LUZP1_MOUSE Leucine zipper protein 1 OS=Mus musculus GN=Luzp1 PE=1 SV=2
          Length = 1068

 Score = 30.0 bits (66), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 16   RRTQSAIDEREVLPPNPAVTGAVPGTATTAAAAGAHGIQAA-VEFKPVEHPIEPLDNDLP 74
            RRTQS++   EVL     + GA+   +   +++   G  +  V  + + +P+E   ++LP
Sbjct: 984  RRTQSSLTASEVLTRRDRMGGAITAASCNHSSSMEEGEDSTFVTSRRIHNPLE--HSELP 1041

Query: 75   IQCPLPEP 82
             +  LPEP
Sbjct: 1042 GKQGLPEP 1049


>sp|A5GT34|MEND_SYNR3 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
           synthase OS=Synechococcus sp. (strain RCC307) GN=menD
           PE=3 SV=1
          Length = 574

 Score = 29.6 bits (65), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 19/63 (30%)

Query: 51  HGIQAAVEFKPVEHPI------------------EPLDNDLPIQCPLPEPSILNVSLKNL 92
           HG+ A VE  P   P                   + LD+DLP+Q P  EP+ L  +L+NL
Sbjct: 331 HGLAAWVELLPTGEPSATSRADAARWQQAESLLQQQLDHDLPLQGPCSEPA-LARALQNL 389

Query: 93  VCS 95
           + S
Sbjct: 390 IPS 392


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.135    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,033,953
Number of Sequences: 539616
Number of extensions: 1392315
Number of successful extensions: 5168
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5144
Number of HSP's gapped (non-prelim): 40
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)