Query 034289
Match_columns 99
No_of_seqs 30 out of 32
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 20:25:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2emg_A Zinc finger protein 484 27.1 28 0.00095 17.3 1.3 10 71-80 37-46 (46)
2 3btp_B Protein VIRE1; TIM barr 26.8 20 0.00069 23.1 0.8 9 75-83 52-60 (63)
3 2a25_A Ubiquitin ligase SIAH1; 24.8 21 0.00071 25.4 0.7 8 73-80 35-42 (193)
4 2ytp_A Zinc finger protein 484 22.6 38 0.0013 16.9 1.3 9 71-79 37-45 (46)
5 2en9_A Zinc finger protein 28 21.3 41 0.0014 16.7 1.3 8 72-79 38-45 (46)
6 2emi_A Zinc finger protein 484 21.1 41 0.0014 16.7 1.2 9 72-80 38-46 (46)
7 3k93_A Phage related exonuclea 19.5 25 0.00086 26.6 0.2 12 87-98 107-118 (223)
8 2eor_A Zinc finger protein 224 18.5 47 0.0016 16.3 1.1 8 72-79 38-45 (46)
9 2eln_A Zinc finger protein 406 18.5 36 0.0012 18.0 0.7 9 71-79 6-14 (38)
10 1zfd_A SWI5; DNA binding motif 17.5 47 0.0016 14.9 0.9 8 72-79 1-8 (32)
No 1
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.11 E-value=28 Score=17.34 Aligned_cols=10 Identities=10% Similarity=-0.021 Sum_probs=6.8
Q ss_pred CCCCcCCCCC
Q 034289 71 NDLPIQCPLP 80 (99)
Q Consensus 71 ~D~PV~CP~P 80 (99)
.++|++|+.+
T Consensus 37 ~~~~~~C~~~ 46 (46)
T 2emg_A 37 GERPSGPSSG 46 (46)
T ss_dssp CCCCSCSCCC
T ss_pred CCCCCCCCCC
Confidence 3578888754
No 2
>3btp_B Protein VIRE1; TIM barrel, unique topology, novel fold, structural genomics structural proteomics center, ISPC, crown GALL tumor; 2.30A {Agrobacterium tumefaciens str}
Probab=26.77 E-value=20 Score=23.11 Aligned_cols=9 Identities=56% Similarity=1.431 Sum_probs=6.2
Q ss_pred cCCCCCCCc
Q 034289 75 IQCPLPEPS 83 (99)
Q Consensus 75 V~CP~PE~s 83 (99)
.+||+||-.
T Consensus 52 l~CPLPE~N 60 (63)
T 3btp_B 52 LHCPLPEEN 60 (63)
T ss_dssp HTCCCCC--
T ss_pred hcCCCchhh
Confidence 589999864
No 3
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=24.84 E-value=21 Score=25.37 Aligned_cols=8 Identities=50% Similarity=1.252 Sum_probs=6.5
Q ss_pred CCcCCCCC
Q 034289 73 LPIQCPLP 80 (99)
Q Consensus 73 ~PV~CP~P 80 (99)
+|..||.|
T Consensus 35 ~p~~Cp~~ 42 (193)
T 2a25_A 35 RPYSCPCP 42 (193)
T ss_dssp -CEECCCC
T ss_pred CCccCCCC
Confidence 79999988
No 4
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.57 E-value=38 Score=16.85 Aligned_cols=9 Identities=11% Similarity=0.039 Sum_probs=6.3
Q ss_pred CCCCcCCCC
Q 034289 71 NDLPIQCPL 79 (99)
Q Consensus 71 ~D~PV~CP~ 79 (99)
.++|++|+.
T Consensus 37 ~~k~~~C~~ 45 (46)
T 2ytp_A 37 GEKPSGPSS 45 (46)
T ss_dssp CCCCCSSCC
T ss_pred CCCCCCCCC
Confidence 357888875
No 5
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.26 E-value=41 Score=16.73 Aligned_cols=8 Identities=13% Similarity=0.027 Sum_probs=5.4
Q ss_pred CCCcCCCC
Q 034289 72 DLPIQCPL 79 (99)
Q Consensus 72 D~PV~CP~ 79 (99)
++|++|+.
T Consensus 38 ~k~~~C~~ 45 (46)
T 2en9_A 38 EKPSGPSS 45 (46)
T ss_dssp SCCCSCCC
T ss_pred CCCCCCCC
Confidence 56777765
No 6
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.07 E-value=41 Score=16.67 Aligned_cols=9 Identities=11% Similarity=-0.034 Sum_probs=6.1
Q ss_pred CCCcCCCCC
Q 034289 72 DLPIQCPLP 80 (99)
Q Consensus 72 D~PV~CP~P 80 (99)
++|++|+.+
T Consensus 38 ~k~~~C~~~ 46 (46)
T 2emi_A 38 EKPSGPSSG 46 (46)
T ss_dssp CCCCSCCCC
T ss_pred CCCCCCCCC
Confidence 577888753
No 7
>3k93_A Phage related exonuclease; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.15A {Haemophilus somnus 129PT}
Probab=19.54 E-value=25 Score=26.56 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=10.3
Q ss_pred cccccceeeeee
Q 034289 87 VSLKNLVCSFEI 98 (99)
Q Consensus 87 Dgl~~~~c~~~~ 98 (99)
|||+-+||||++
T Consensus 107 ~gllEIKCp~s~ 118 (223)
T 3k93_A 107 KLIIDTKCSWDI 118 (223)
T ss_dssp TEEEEEEECSST
T ss_pred CCeEEEeCCCCc
Confidence 599999999974
No 8
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=18.53 E-value=47 Score=16.33 Aligned_cols=8 Identities=13% Similarity=0.027 Sum_probs=5.0
Q ss_pred CCCcCCCC
Q 034289 72 DLPIQCPL 79 (99)
Q Consensus 72 D~PV~CP~ 79 (99)
++|++|+.
T Consensus 38 ~kp~~C~~ 45 (46)
T 2eor_A 38 EKPSGPSS 45 (46)
T ss_dssp CCCSSSTT
T ss_pred CCCCCCCC
Confidence 46677764
No 9
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=18.49 E-value=36 Score=18.01 Aligned_cols=9 Identities=22% Similarity=0.873 Sum_probs=7.2
Q ss_pred CCCCcCCCC
Q 034289 71 NDLPIQCPL 79 (99)
Q Consensus 71 ~D~PV~CP~ 79 (99)
.++|++|+.
T Consensus 6 gekp~~C~~ 14 (38)
T 2eln_A 6 SGILLKCPT 14 (38)
T ss_dssp CCCCEECSS
T ss_pred CCCCCCCCC
Confidence 478999985
No 10
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=17.45 E-value=47 Score=14.91 Aligned_cols=8 Identities=38% Similarity=0.771 Sum_probs=5.9
Q ss_pred CCCcCCCC
Q 034289 72 DLPIQCPL 79 (99)
Q Consensus 72 D~PV~CP~ 79 (99)
++|++|+.
T Consensus 1 ek~~~C~~ 8 (32)
T 1zfd_A 1 DRPYSCDH 8 (32)
T ss_dssp CCSBCCCC
T ss_pred CCCCcCcC
Confidence 47888873
Done!