Query 034289
Match_columns 99
No_of_seqs 30 out of 32
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 20:25:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034289.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034289hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zfda_ g.37.1.1 (A:) SWI5 zin 38.2 6 0.00044 20.5 1.2 9 72-80 1-9 (32)
2 d1bhia_ g.37.1.1 (A:) Transact 34.3 5.9 0.00043 22.0 0.8 11 71-81 3-13 (38)
3 d1sp2a_ g.37.1.1 (A:) Transcri 29.7 9.4 0.00068 19.4 1.0 9 73-81 1-9 (31)
4 d1ubdc4 g.37.1.1 (C:381-408) Y 22.3 15 0.0011 18.5 1.0 9 73-81 1-9 (28)
5 d2ja9a2 d.51.1.1 (A:152-236) R 22.1 10 0.00076 23.0 0.4 13 83-95 36-48 (85)
6 d1p7aa_ g.37.1.1 (A:) Kruppel- 19.3 17 0.0013 18.6 0.8 12 71-82 8-19 (37)
7 d1g40a4 g.18.1.1 (A:185-243) C 18.3 20 0.0015 19.0 1.0 7 75-81 1-7 (59)
8 d1a1ia1 g.37.1.1 (A:103-131) Z 17.9 16 0.0012 18.4 0.5 9 73-81 1-9 (29)
9 d2glia3 g.37.1.1 (A:168-197) F 17.6 23 0.0017 17.8 1.1 8 73-80 1-8 (30)
10 d1wj2a_ g.79.1.1 (A:) WRKY DNA 16.9 20 0.0014 21.6 0.8 14 81-94 6-19 (71)
No 1
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.17 E-value=6 Score=20.48 Aligned_cols=9 Identities=44% Similarity=0.966 Sum_probs=7.8
Q ss_pred CCCcCCCCC
Q 034289 72 DLPIQCPLP 80 (99)
Q Consensus 72 D~PV~CP~P 80 (99)
|||+.|+-|
T Consensus 1 ErP~~C~~p 9 (32)
T d1zfda_ 1 DRPYSCDHP 9 (32)
T ss_dssp CCSBCCCCT
T ss_pred CcCeECcCC
Confidence 689999976
No 2
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.34 E-value=5.9 Score=22.03 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=9.1
Q ss_pred CCCCcCCCCCC
Q 034289 71 NDLPIQCPLPE 81 (99)
Q Consensus 71 ~D~PV~CP~PE 81 (99)
.|||+.|..|-
T Consensus 3 ddkPF~C~~pG 13 (38)
T d1bhia_ 3 DDKPFLCTAPG 13 (38)
T ss_dssp TCCCEECCCTT
T ss_pred CCCceecCCCC
Confidence 39999998874
No 3
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.69 E-value=9.4 Score=19.39 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=6.8
Q ss_pred CCcCCCCCC
Q 034289 73 LPIQCPLPE 81 (99)
Q Consensus 73 ~PV~CP~PE 81 (99)
||++||-|.
T Consensus 1 kpf~C~~~~ 9 (31)
T d1sp2a_ 1 RPFMCTWSY 9 (31)
T ss_dssp CCCBCCSTT
T ss_pred CcCCCcCCC
Confidence 688998664
No 4
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.30 E-value=15 Score=18.49 Aligned_cols=9 Identities=33% Similarity=0.844 Sum_probs=6.8
Q ss_pred CCcCCCCCC
Q 034289 73 LPIQCPLPE 81 (99)
Q Consensus 73 ~PV~CP~PE 81 (99)
||++|+.|.
T Consensus 1 rPf~C~~~g 9 (28)
T d1ubdc4 1 RPYVCPFDG 9 (28)
T ss_dssp CCCCCCSTT
T ss_pred CCcCCCCCC
Confidence 688998763
No 5
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=22.10 E-value=10 Score=23.00 Aligned_cols=13 Identities=15% Similarity=0.000 Sum_probs=10.3
Q ss_pred cccccccccceee
Q 034289 83 SILNVSLKNLVCS 95 (99)
Q Consensus 83 sIl~Dgl~~~~c~ 95 (99)
.|=++|.+|++|+
T Consensus 36 ~VG~NGrIWi~~~ 48 (85)
T d2ja9a2 36 AIGLNGKIWVKCE 48 (85)
T ss_dssp EEETTTEEEEECS
T ss_pred EEecCcEEEEECC
Confidence 3457999999995
No 6
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.33 E-value=17 Score=18.59 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=8.7
Q ss_pred CCCCcCCCCCCC
Q 034289 71 NDLPIQCPLPEP 82 (99)
Q Consensus 71 ~D~PV~CP~PE~ 82 (99)
.+||++|+.=.-
T Consensus 8 geKPy~C~~C~k 19 (37)
T d1p7aa_ 8 GIKPFQCPDCDR 19 (37)
T ss_dssp CSSSBCCTTTCC
T ss_pred CccCeEeCCCCC
Confidence 479999986443
No 7
>d1g40a4 g.18.1.1 (A:185-243) Complement control protein {Vaccinia virus [TaxId: 10245]}
Probab=18.32 E-value=20 Score=19.00 Aligned_cols=7 Identities=43% Similarity=1.393 Sum_probs=5.4
Q ss_pred cCCCCCC
Q 034289 75 IQCPLPE 81 (99)
Q Consensus 75 V~CP~PE 81 (99)
|+||.|.
T Consensus 1 V~C~~P~ 7 (59)
T d1g40a4 1 VKCPHPT 7 (59)
T ss_dssp CCCCCCC
T ss_pred CCCcCCC
Confidence 7898774
No 8
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.93 E-value=16 Score=18.38 Aligned_cols=9 Identities=33% Similarity=0.929 Sum_probs=6.8
Q ss_pred CCcCCCCCC
Q 034289 73 LPIQCPLPE 81 (99)
Q Consensus 73 ~PV~CP~PE 81 (99)
||++|+.|.
T Consensus 1 Kp~~C~~~g 9 (29)
T d1a1ia1 1 RPYACPVES 9 (29)
T ss_dssp CCEECCSTT
T ss_pred CCeECCCCC
Confidence 688898764
No 9
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.63 E-value=23 Score=17.79 Aligned_cols=8 Identities=25% Similarity=0.746 Sum_probs=6.2
Q ss_pred CCcCCCCC
Q 034289 73 LPIQCPLP 80 (99)
Q Consensus 73 ~PV~CP~P 80 (99)
||++|+-|
T Consensus 1 kp~~C~~~ 8 (30)
T d2glia3 1 KPHKCTFE 8 (30)
T ss_dssp CCCCCCST
T ss_pred CCeeCCCC
Confidence 68889865
No 10
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=16.94 E-value=20 Score=21.63 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=11.7
Q ss_pred CCccccccccccee
Q 034289 81 EPSILNVSLKNLVC 94 (99)
Q Consensus 81 E~sIl~Dgl~~~~c 94 (99)
+-.|+.||..|-|+
T Consensus 6 ~~~~~dDGy~WRKY 19 (71)
T d1wj2a_ 6 EVDLLDDGYRWRKY 19 (71)
T ss_dssp CCCCCCSSSCBCCC
T ss_pred ccccCCCCcEeccc
Confidence 45689999999886
Done!