BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034290
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex
Length = 118
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 14 ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
IC + K IP + +YLVPADLTVGQFVYVIRKRI L EKAIFIFV++ LPPT A+
Sbjct: 34 ICEKAEKSDIPE-IDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 92
Query: 74 MSTIYDEKKDEDGFLYVTYSGENTFG 99
MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 93 MSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8
Length = 116
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 14 ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
IC + K IP + +YLVPADLTVGQFVYVIRKRI L EKAIFIFV++ LPPT A+
Sbjct: 32 ICEKAEKSDIPE-IDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 90
Query: 74 MSTIYDEKKDEDGFLYVTYSGENTFG 99
MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 91 MSAIYQEHKDKDGFLYVTYSGENTFG 116
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8
Length = 119
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 14 ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
IC + K IP + +YLVPADLTVGQFVYVIRKRI L EKAIFIFV++ LPPT A+
Sbjct: 34 ICEKAEKSDIPE-IDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 92
Query: 74 MSTIYDEKKDEDGFLYVTYSGENTFG 99
MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 93 MSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|D Chain D, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|3VXW|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg8
Complexed With Atg32 Aim
Length = 119
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 14 ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
IC + K IP + +YLVPADLTVGQFVYVIRKRI L EKAIFIFV++ LPPT A+
Sbjct: 35 ICEKAEKSDIPE-IDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 93
Query: 74 MSTIYDEKKDEDGFLYVTYSGENTFG 99
MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 94 MSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex
Length = 117
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 14 ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
IC + K IP + +YLVPADLTVGQFVYVIRKRI L EKAIFIFV++ LPPT A+
Sbjct: 33 ICEKAEKSDIPE-IDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 91
Query: 74 MSTIYDEKKDEDGFLYVTYSGENTFG 99
MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 92 MSAIYQEHKDKDGFLYVTYSGENTFG 117
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|B Chain B, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 119
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 14 ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
IC + K IP + +YLVPADLTVGQFVYVIRKRI L EKAIFIFV++ LPPT A+
Sbjct: 35 ICEKAEKSDIPE-IDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 93
Query: 74 MSTIYDEKKDEDGFLYVTYSGENTFG 99
MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 94 MSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
Length = 117
Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 58/69 (84%)
Query: 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYV 90
+YLVP+D+TV QF+++IRKRI+L +EKAIF+FVD +P + M +Y+++KDEDGFLYV
Sbjct: 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYV 107
Query: 91 TYSGENTFG 99
YSGENTFG
Sbjct: 108 AYSGENTFG 116
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8
pdb|3H9D|B Chain B, Crystal Structure Of Trypanosoma Brucei Atg8
Length = 119
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 58/73 (79%)
Query: 27 LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG 86
L C++LVP+DLTVGQFV V+RKR++L AE A+F++ ++ + P+ A M+ IY + KDEDG
Sbjct: 47 LDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDG 106
Query: 87 FLYVTYSGENTFG 99
FLY+ YSGE TFG
Sbjct: 107 FLYMKYSGEATFG 119
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
pdb|3M95|B Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
Length = 125
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 27 LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG 86
L +YLVP+DLTVGQF ++IRKRI L E A+F FV+NV+PPT A M ++Y E DED
Sbjct: 52 LDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDF 111
Query: 87 FLYVTYSGENTFG 99
FLY+ +S EN +G
Sbjct: 112 FLYIAFSDENVYG 124
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap
pdb|1KLV|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
pdb|1KM7|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
Length = 117
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 27 LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG 86
L +YLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M +Y E +ED
Sbjct: 44 LDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDF 103
Query: 87 FLYVTYSGENTFG 99
FLY+ YS E+ +G
Sbjct: 104 FLYIAYSDESVYG 116
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated
Protein, Gabarap
Length = 119
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 27 LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG 86
L +YLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M +Y E +ED
Sbjct: 46 LDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDF 105
Query: 87 FLYVTYSGENTFG 99
FLY+ YS E+ +G
Sbjct: 106 FLYIAYSDESVYG 118
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated
Protein Gabarap
pdb|3D32|A Chain A, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3D32|B Chain B, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3DOW|A Chain A, Complex Structure Of Gaba Type A Receptor Associated
Protein And Its Binding Epitope On Calreticulin
Length = 119
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 27 LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG 86
L +YLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M +Y E +ED
Sbjct: 46 LDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDF 105
Query: 87 FLYVTYSGENTFG 99
FLY+ YS E+ +G
Sbjct: 106 FLYIAYSDESVYG 118
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure
Length = 119
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 14 ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
I + K +P L +YLVP+DLTVGQF ++IRKRI L E A+F FV+N +PPT A
Sbjct: 36 IVEKAPKARVPD-LDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 94
Query: 74 MSTIYDEKKDEDGFLYVTYSGEN 96
M +Y++ +ED FLYV YS E+
Sbjct: 95 MGQLYEDNHEEDYFLYVAYSDES 117
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
pdb|2R2Q|B Chain B, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
Length = 110
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 14 ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
I + K +P L +YLVP+DLTVGQF ++IRKRI L E A+F FV+N +PPT A
Sbjct: 31 IVEKAPKARVPD-LDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 89
Query: 74 MSTIYDEKKDEDGFLYVTYS 93
M +Y++ +ED FLYV YS
Sbjct: 90 MGQLYEDNHEEDYFLYVAYS 109
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|B Chain B, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|C Chain C, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
Length = 128
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 54/83 (65%), Gaps = 9/83 (10%)
Query: 26 CLQCCRYLVPADLTVGQFVYVIRKRIKLSA---------EKAIFIFVDNVLPPTGAIMST 76
++ ++LVP ++ VG+F +++ + I SA E+ I++FV+N++P TG +M
Sbjct: 46 IIEKKKFLVPMNMLVGEFKFILHQHINQSAYGSNMKLFRERTIYLFVNNIVPKTGLLMQD 105
Query: 77 IYDEKKDEDGFLYVTYSGENTFG 99
+Y+ KDEDG+LY+ YS E++ G
Sbjct: 106 LYEMYKDEDGYLYMEYSSESSLG 128
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c
Length = 128
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 27 LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSTIYDEKKDED 85
L ++LVP +LT+ QF+ +IR R+ L A +A ++ V+N L A M+ IY + KDED
Sbjct: 55 LDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDED 114
Query: 86 GFLYVTYSGENTFG 99
GF+Y+TY+ + TFG
Sbjct: 115 GFVYMTYASQETFG 128
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light
Chain-3
Length = 120
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 26 CLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDE 84
L ++LVP + + + + +IR+R++L+A +A F+ V+ + + +S +Y+ +KDE
Sbjct: 46 VLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDE 105
Query: 85 DGFLYVTYSGENTFG 99
DGFLY+ Y+ + TFG
Sbjct: 106 DGFLYMVYASQETFG 120
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex
pdb|2ZJD|C Chain C, Crystal Structure Of Lc3-P62 Complex
Length = 130
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 26 CLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDE 84
L ++LVP + + + + +IR+R++L+A +A F+ V+ + + +S +Y+ +KDE
Sbjct: 51 VLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDE 110
Query: 85 DGFLYVTYSGENTFG 99
DGFLY+ Y+ + TFG
Sbjct: 111 DGFLYMVYASQETFG 125
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure
Length = 121
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 26 CLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDE 84
L ++LVP + + + + +IR+R++L+A +A F+ V+ + + +S +Y+ ++DE
Sbjct: 47 VLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDE 106
Query: 85 DGFLYVTYSGENTFG 99
DGFLY+ Y+ + TFG
Sbjct: 107 DGFLYMVYASQETFG 121
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex
pdb|2ZZP|B Chain B, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124)
Complex
Length = 129
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 26 CLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDE 84
L ++LVP + + + + +IR+R++L+A +A F+ V+ + + +S +Y+ ++DE
Sbjct: 51 VLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDE 110
Query: 85 DGFLYVTYSGENTFG 99
DGFLY+ Y+ + TFG
Sbjct: 111 DGFLYMVYASQETFG 125
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3
pdb|2Z0D|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex
Length = 125
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 26 CLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDE 84
L ++LVP + + + + +IR+R++L+A +A F+ V+ + + +S +Y+ ++DE
Sbjct: 51 VLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDE 110
Query: 85 DGFLYVTYSGENTFG 99
DGFLY+ Y+ + TFG
Sbjct: 111 DGFLYMVYASQETFG 125
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
pdb|3ECI|B Chain B, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
Length = 122
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 26 CLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDE 84
L ++LVP + + + V +IR+R++L+ +A F+ V+ + + ++ IY+++KDE
Sbjct: 47 VLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDE 106
Query: 85 DGFLYVTYSGENTFG 99
DGFLY+ Y+ + TFG
Sbjct: 107 DGFLYMVYASQETFG 121
>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In
Complex With Its Substrate Glcnac-Alpha-1,4-Galactose
Length = 914
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 12/34 (35%)
Query: 56 EKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLY 89
EKAI IF N YDE KD D FLY
Sbjct: 696 EKAIEIFAKN------------YDEFKDSDAFLY 717
>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With 2-Acetamido-1,2-Dideoxynojirmycin
pdb|2VCA|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Beta-N-Acetyl-D-Glucosamine
pdb|2VCB|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Pugnac
pdb|2VCC|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
Length = 891
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 12/34 (35%)
Query: 56 EKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLY 89
EKAI IF N YDE KD D FLY
Sbjct: 673 EKAIEIFAKN------------YDEFKDSDAFLY 694
>pdb|3EPZ|A Chain A, Structure Of The Replication Foci-Targeting Sequence Of
Human Dna Cytosine Methyltransferase Dnmt1
pdb|3EPZ|B Chain B, Structure Of The Replication Foci-Targeting Sequence Of
Human Dna Cytosine Methyltransferase Dnmt1
Length = 268
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 21 FYIPTCLQCCRYLVPADLTVGQ 42
F P C+QC +YL DL GQ
Sbjct: 16 FQGPKCIQCGQYLDDPDLKYGQ 37
>pdb|1VKN|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|C Chain C, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|D Chain D, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
Length = 351
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 52 KLSAEKAIFIFVDNVLPPTGAIMSTIY 78
K+S +K +F +++P T I+STIY
Sbjct: 228 KISGKKVNVVFTPHLVPXTRGILSTIY 254
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 61 IFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 99
I + NV P+G T D K DG +V +SGE TFG
Sbjct: 25 IVLSNVAVPSG----TTLDLTKLNDG-THVIFSGETTFG 58
>pdb|4GDK|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
pdb|4GDK|D Chain D, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
pdb|4GDL|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
Length = 91
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 27 LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPT-GAIMSTIYDEKKDED 85
++ ++ V T+ + I+K +KL A + +FI+V+ P+ + T+Y E D
Sbjct: 19 MKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLY-ECFGSD 77
Query: 86 GFLYVTYSGENTFG 99
G L + Y +G
Sbjct: 78 GKLVLHYCKSQAWG 91
>pdb|3REN|A Chain A, Cpf_2247, A Novel Alpha-Amylase From Clostridium
Perfringens
pdb|3REN|B Chain B, Cpf_2247, A Novel Alpha-Amylase From Clostridium
Perfringens
Length = 350
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 80 EKKDEDGFLYVTYSGEN 96
EK +DGFL TY+G+N
Sbjct: 257 EKFKKDGFLVATYNGKN 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.144 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,788,877
Number of Sequences: 62578
Number of extensions: 95724
Number of successful extensions: 245
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 30
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)