Query 034290
Match_columns 99
No_of_seqs 106 out of 327
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 20:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m95_A Autophagy related prote 100.0 1.2E-46 4.1E-51 259.9 9.7 97 2-99 27-124 (125)
2 3rui_B Autophagy-related prote 100.0 1.8E-46 6E-51 256.8 10.2 97 2-99 21-118 (118)
3 3h9d_A ATG8, microtubule-assoc 100.0 2.2E-46 7.5E-51 256.7 9.5 97 2-99 22-119 (119)
4 1eo6_A GATE-16, golgi-associat 100.0 1.5E-43 5.1E-48 241.6 9.9 97 2-99 19-116 (117)
5 2zjd_A Microtubule-associated 100.0 5E-44 1.7E-48 248.2 7.4 97 2-99 26-125 (130)
6 2r2q_A Gamma-aminobutyric acid 100.0 6.8E-40 2.3E-44 221.3 9.4 92 2-94 18-110 (110)
7 4gdk_A Ubiquitin-like protein 100.0 2E-35 6.7E-40 194.1 9.8 85 13-99 6-91 (91)
8 1wz3_A Autophagy 12B, ATG12B, 100.0 1.2E-33 4.1E-38 187.2 8.7 83 10-99 13-96 (96)
9 3w1s_C Ubiquitin-like protein 100.0 1.2E-32 4.1E-37 180.9 8.9 82 13-99 9-91 (91)
10 3goe_A DNA repair protein RAD6 95.2 0.061 2.1E-06 34.1 5.9 48 29-76 21-68 (82)
11 2dyo_A Autophagy protein 5; ub 93.0 0.096 3.3E-06 39.9 4.1 54 39-93 231-285 (297)
12 3vqi_A ATG5; autophagy, E3-lik 92.8 0.077 2.6E-06 40.1 3.3 74 7-91 196-272 (274)
13 4gdk_B Autophagy protein 5; pr 92.6 0.14 4.6E-06 38.7 4.4 79 7-93 181-270 (275)
14 2uyz_B Small ubiquitin-related 89.2 1.3 4.5E-05 25.9 5.7 60 29-92 15-74 (79)
15 1wh3_A 59 kDa 2'-5'-oligoadeny 88.4 1.3 4.6E-05 26.2 5.5 58 31-93 21-79 (87)
16 3a4r_A Nfatc2-interacting prot 88.0 1.7 5.9E-05 26.1 5.8 48 29-77 20-67 (79)
17 1ndd_A NEDD8, protein (ubiquit 87.8 1.3 4.6E-05 25.2 5.1 59 30-93 13-72 (76)
18 3mtn_B UBA80, ubcep1, ubiquiti 87.4 1 3.5E-05 26.4 4.4 61 29-93 15-75 (85)
19 3n3k_B Ubiquitin; hydrolase, p 87.3 1.1 3.6E-05 26.4 4.4 60 30-93 16-75 (85)
20 1wy8_A NP95-like ring finger p 87.2 1.7 5.8E-05 26.0 5.4 56 34-93 26-81 (89)
21 3a9j_A Ubiquitin; protein comp 87.1 1.4 4.9E-05 25.0 4.9 59 30-93 13-72 (76)
22 2kvr_A Ubiquitin carboxyl-term 86.8 0.98 3.3E-05 30.3 4.5 54 30-83 58-119 (130)
23 1uh6_A Ubiquitin-like 5; beta- 85.8 3 0.0001 26.8 6.3 61 29-93 40-100 (100)
24 3phx_B Ubiquitin-like protein 85.2 2.3 7.8E-05 24.8 5.2 59 30-92 17-75 (79)
25 2dzi_A Ubiquitin-like protein 84.6 1.2 4.1E-05 25.9 3.7 45 31-76 21-65 (81)
26 1wyw_B Ubiquitin-like protein 84.3 3.2 0.00011 25.6 5.7 61 29-93 33-93 (97)
27 2hj8_A Interferon-induced 17 k 83.8 2.4 8.3E-05 25.5 5.0 60 31-94 18-77 (88)
28 1vd2_A Protein kinase C, IOTA 83.8 2.6 8.9E-05 26.6 5.2 62 29-90 17-86 (89)
29 1wm3_A Ubiquitin-like protein 83.7 1.9 6.5E-05 25.3 4.3 48 29-77 13-60 (72)
30 2bwf_A Ubiquitin-like protein 83.5 2.6 8.7E-05 24.2 4.8 58 30-92 16-74 (77)
31 2kk8_A Uncharacterized protein 83.5 3.1 0.00011 25.1 5.4 58 31-92 24-82 (84)
32 3k9o_B Ubiquitin, UBB+1; E2-25 83.2 2.5 8.6E-05 25.5 4.9 59 31-93 15-73 (96)
33 2l7r_A Ubiquitin-like protein 83.2 3.4 0.00012 25.2 5.6 60 29-92 29-88 (93)
34 1yqb_A Ubiquilin 3; structural 82.8 2.8 9.6E-05 26.2 5.1 60 31-94 35-94 (100)
35 1wx7_A Ubiquilin 3; ubiquitin- 82.3 3 0.0001 26.0 5.1 58 31-93 30-88 (106)
36 4dwf_A HLA-B-associated transc 82.2 2.9 0.0001 25.0 4.8 58 31-93 19-76 (90)
37 1yx5_B Ubiquitin; proteasome, 81.9 2.9 0.0001 25.6 4.9 60 31-94 14-73 (98)
38 3dbh_I NEDD8; cell cycle, acti 80.9 2.8 9.5E-05 24.7 4.4 59 30-92 25-83 (88)
39 3plu_A Ubiquitin-like modifier 80.6 8.4 0.00029 24.5 6.7 59 29-92 33-92 (93)
40 2io0_B Small ubiquitin-related 80.4 2.6 8.9E-05 26.3 4.2 48 29-77 17-64 (91)
41 2faz_A Ubiquitin-like containi 80.4 2.5 8.6E-05 24.5 4.0 57 31-92 17-75 (78)
42 2k8h_A Small ubiquitin protein 80.3 4.4 0.00015 26.2 5.5 48 29-77 38-85 (110)
43 2kan_A Uncharacterized protein 79.9 4 0.00014 25.1 5.0 58 32-93 29-87 (94)
44 4eew_A Large proline-rich prot 79.8 4 0.00014 24.3 4.8 45 31-76 31-75 (88)
45 4hcn_B Polyubiquitin, ubiquiti 79.4 2.8 9.7E-05 25.8 4.2 58 30-92 35-93 (98)
46 1sif_A Ubiquitin; hydrophobic 78.9 3.1 0.00011 25.1 4.2 57 31-92 23-80 (88)
47 2kd0_A LRR repeats and ubiquit 77.9 2.2 7.5E-05 25.8 3.2 56 32-92 26-82 (85)
48 3v6c_B Ubiquitin; structural g 77.7 4.7 0.00016 24.2 4.8 56 31-91 31-87 (91)
49 4dbg_A Ranbp-type and C3HC4-ty 77.4 12 0.00041 24.1 8.0 60 11-76 25-84 (105)
50 4fbj_B NEDD8; effector-HOST ta 77.3 4.7 0.00016 24.3 4.6 59 31-93 14-72 (88)
51 2jxx_A Nfatc2-interacting prot 76.0 7.9 0.00027 24.6 5.6 47 30-77 39-85 (97)
52 2ojr_A Ubiquitin; lanthide-bin 75.6 5.6 0.00019 25.0 4.8 58 31-93 49-107 (111)
53 3vdz_A Ubiquitin-40S ribosomal 75.5 5 0.00017 25.4 4.6 59 30-92 48-106 (111)
54 1wgd_A Homocysteine-responsive 75.2 5.6 0.00019 24.0 4.6 57 34-92 26-84 (93)
55 1wx8_A Riken cDNA 4931431F19; 74.7 5.4 0.00018 24.2 4.4 48 29-77 28-75 (96)
56 2wyq_A HHR23A, UV excision rep 74.5 10 0.00035 22.0 6.2 76 8-95 2-82 (85)
57 2d07_B Ubiquitin-like protein 74.2 4.8 0.00016 24.9 4.2 48 29-77 29-76 (93)
58 2klc_A Ubiquilin-1; ubiquitin- 74.1 5.5 0.00019 24.7 4.5 60 29-93 36-96 (101)
59 1oey_A P67-PHOX, neutrophil cy 73.9 3.1 0.0001 26.1 3.1 51 33-83 19-73 (83)
60 2eke_C Ubiquitin-like protein 73.8 4.6 0.00016 26.0 4.1 48 29-77 42-89 (106)
61 4a3p_A Ubiquitin carboxyl-term 73.4 9.5 0.00032 27.0 6.1 61 30-93 142-208 (217)
62 2lxa_A Ubiquitin-like protein 72.5 7.8 0.00027 23.8 4.8 43 34-77 20-63 (87)
63 2kdi_A Ubiquitin, vacuolar pro 71.9 4.8 0.00017 25.7 3.9 57 32-93 24-81 (114)
64 1we7_A SF3A1 protein; structur 71.3 16 0.00056 22.9 7.4 85 4-93 18-107 (115)
65 2fnj_B Transcription elongatio 71.0 19 0.00065 23.6 6.9 62 34-98 18-85 (118)
66 3m63_B Ubiquitin domain-contai 71.0 3.5 0.00012 25.8 2.9 45 32-77 42-86 (101)
67 1ip9_A BEM1 protein; ubiquitin 70.9 4.5 0.00015 25.6 3.4 30 32-62 26-55 (85)
68 1j8c_A Ubiquitin-like protein 70.6 7.9 0.00027 25.2 4.7 59 30-93 44-103 (125)
69 3m62_B UV excision repair prot 70.4 3.3 0.00011 26.0 2.8 59 32-94 16-74 (106)
70 3rt3_B Ubiquitin-like protein 70.0 7.6 0.00026 25.5 4.6 60 31-93 16-76 (159)
71 1ttn_A DC-UBP, dendritic cell- 69.5 14 0.00048 22.9 5.6 59 31-94 37-96 (106)
72 1x1m_A Ubiquitin-like protein 69.0 18 0.00061 22.5 6.1 53 37-93 44-99 (107)
73 3b08_A Polyubiquitin-C, ubiqui 68.4 6.3 0.00022 25.3 3.9 58 31-93 14-72 (152)
74 1v5t_A 8430435I17RIK protein; 68.4 11 0.00036 22.8 4.7 59 33-95 23-84 (90)
75 4b6w_A Tubulin-specific chaper 68.1 5.7 0.00019 24.3 3.4 43 33-75 20-68 (86)
76 1wjn_A Tubulin-folding protein 67.5 5.9 0.0002 24.3 3.4 31 33-63 28-59 (97)
77 3b1l_X E3 ubiquitin-protein li 70.3 1.2 4E-05 25.8 0.0 45 32-77 15-59 (76)
78 1we6_A Splicing factor, putati 66.3 13 0.00046 23.1 5.1 81 4-93 20-103 (111)
79 1v5o_A 1700011N24RIK protein; 65.9 7.5 0.00026 24.1 3.7 57 32-92 26-83 (102)
80 3b08_A Polyubiquitin-C, ubiqui 65.8 13 0.00043 23.8 5.0 61 29-93 88-148 (152)
81 1j0g_A Hypothetical protein 18 65.3 23 0.00079 22.4 6.1 59 24-83 21-79 (92)
82 3rt3_B Ubiquitin-like protein 64.7 16 0.00055 23.9 5.4 61 29-93 93-153 (159)
83 1wf9_A NPL4 family protein; be 64.6 5.4 0.00018 25.1 2.9 62 30-96 19-97 (107)
84 1uel_A HHR23B, UV excision rep 63.8 11 0.00039 22.8 4.2 59 31-94 14-76 (95)
85 2io1_B Small ubiquitin-related 63.4 13 0.00045 23.0 4.5 48 29-77 19-66 (94)
86 2kj6_A Tubulin folding cofacto 62.3 18 0.00063 22.5 5.1 62 10-76 14-81 (97)
87 1wxv_A BAG-family molecular ch 60.1 16 0.00056 21.7 4.5 46 31-77 20-71 (92)
88 1yfb_A Transition state regula 59.2 7.7 0.00026 22.5 2.6 21 45-65 28-48 (59)
89 3u30_A Ubiquitin, linear DI-ub 59.2 17 0.00058 24.2 4.8 59 31-93 34-92 (172)
90 2kjr_A CG11242; UBL, ubiquitin 59.0 26 0.00088 21.6 5.3 47 30-76 30-81 (95)
91 3kyd_D Small ubiquitin-related 57.7 12 0.00042 24.5 3.7 48 29-77 52-99 (115)
92 1wju_A NEDD8 ultimate buster-1 57.4 34 0.0012 21.7 8.3 47 29-76 31-77 (100)
93 1q1o_A Cell division control p 57.0 5.6 0.00019 25.6 1.9 27 30-56 25-51 (98)
94 2kdb_A Homocysteine-responsive 56.0 12 0.00041 23.4 3.4 46 32-79 40-88 (99)
95 2dzm_A FAS-associated factor 1 55.8 17 0.00057 23.0 4.0 45 32-77 23-68 (100)
96 3l0w_B Monoubiquitinated proli 55.6 25 0.00086 23.8 5.2 59 31-93 14-72 (169)
97 2l66_A SSO7C4, transcriptional 54.7 11 0.00037 20.9 2.7 21 45-65 18-38 (53)
98 1mvf_D MAZE protein, PEMI-like 53.5 9.1 0.00031 22.9 2.4 39 45-83 19-64 (82)
99 1v86_A DNA segment, CHR 7, way 53.4 9.4 0.00032 23.4 2.5 45 31-77 30-74 (95)
100 1pqs_A Cell division control p 53.0 9.5 0.00032 23.3 2.4 23 32-54 6-28 (77)
101 2kc2_A Talin-1, F1; FERM, adhe 52.9 25 0.00084 23.5 4.7 40 23-64 18-57 (128)
102 3u5e_m 60S ribosomal protein L 50.9 3.2 0.00011 26.9 0.0 45 32-77 15-59 (128)
103 4a20_A Ubiquitin-like protein 50.3 17 0.00059 22.7 3.4 55 34-93 38-95 (98)
104 3q3f_A Ribonuclease/ubiquitin 49.0 21 0.0007 25.1 4.0 58 31-92 119-176 (189)
105 1v2y_A 3300001G02RIK protein; 47.4 13 0.00046 23.7 2.6 60 33-95 23-97 (105)
106 1wz0_A Ubiquitin-like protein 47.3 28 0.00097 22.0 4.2 48 29-77 36-83 (104)
107 2daf_A FLJ35834 protein; hypot 47.0 58 0.002 21.4 5.7 47 29-76 28-74 (118)
108 2i1s_A Hypothetical protein; m 46.5 59 0.002 22.3 6.0 29 29-57 23-51 (188)
109 2l32_A Small archaeal modifier 45.2 19 0.00066 21.4 2.9 37 31-72 14-50 (74)
110 3u5c_f 40S ribosomal protein S 45.0 4.5 0.00016 27.5 0.0 45 32-77 15-59 (152)
111 3pge_A SUMO-modified prolifera 42.4 34 0.0012 24.4 4.3 38 29-66 40-77 (200)
112 4ajy_B Transcription elongatio 42.3 30 0.001 22.7 3.8 65 30-98 13-85 (118)
113 3tix_A Ubiquitin-like protein 42.1 23 0.00078 25.7 3.3 48 29-77 68-115 (207)
114 1x5p_A Negative elongation fac 41.3 30 0.001 20.3 3.4 34 61-95 18-59 (97)
115 2e5i_A Heterogeneous nuclear r 40.4 22 0.00074 23.1 2.8 42 54-95 21-72 (124)
116 1ryj_A Unknown; beta/alpha pro 39.6 42 0.0014 19.3 3.8 37 31-72 17-53 (70)
117 3jyu_A Ubiquitin carboxyl-term 38.4 29 0.001 24.7 3.5 59 32-93 156-220 (231)
118 2pjh_A Protein NPL4, nuclear p 38.2 16 0.00055 21.9 1.8 46 32-77 18-67 (80)
119 1sjr_A Polypyrimidine tract-bi 38.1 48 0.0016 22.7 4.4 42 54-95 42-94 (164)
120 2ylm_A Ubiquitin carboxyl-term 37.6 29 0.001 27.8 3.7 60 31-91 150-215 (530)
121 3tuo_A DNA-binding protein SAT 37.6 35 0.0012 22.2 3.4 48 33-80 34-93 (105)
122 3u30_A Ubiquitin, linear DI-ub 37.1 49 0.0017 21.9 4.3 46 30-76 109-154 (172)
123 4efo_A Serine/threonine-protei 36.6 59 0.002 20.4 4.4 38 29-66 25-62 (94)
124 2kzr_A Ubiquitin thioesterase 36.1 32 0.0011 20.3 2.9 57 34-94 17-78 (86)
125 3ai5_A Yeast enhanced green fl 35.0 33 0.0011 25.9 3.4 55 32-91 248-303 (307)
126 1v6e_A Cytoskeleton-associated 34.7 74 0.0025 19.0 5.9 47 10-62 7-54 (95)
127 1vjk_A Molybdopterin convertin 32.7 41 0.0014 20.4 3.1 42 31-72 30-81 (98)
128 2ylm_A Ubiquitin carboxyl-term 32.1 59 0.002 26.0 4.7 63 29-93 37-111 (530)
129 3zzy_A Polypyrimidine tract-bi 31.9 32 0.0011 22.6 2.6 33 51-83 21-54 (130)
130 2bz2_A Negative elongation fac 31.9 41 0.0014 21.0 3.1 36 60-96 41-84 (121)
131 3nyi_A FAT acid-binding protei 31.8 72 0.0025 23.4 4.8 58 29-95 36-95 (297)
132 3fdj_A DEGV family protein; GU 31.1 62 0.0021 23.6 4.3 53 30-95 34-86 (278)
133 3cmm_A Ubiquitin-activating en 31.0 57 0.0019 28.5 4.6 49 31-81 921-980 (1015)
134 3beg_B Splicing factor, argini 30.7 77 0.0026 19.3 4.2 36 61-96 19-62 (115)
135 1t0y_A Tubulin folding cofacto 30.0 1.1E+02 0.0036 19.4 5.7 47 11-63 7-54 (122)
136 3po0_A Small archaeal modifier 29.9 36 0.0012 20.1 2.4 42 31-72 21-72 (89)
137 1wf0_A TDP-43, TAR DNA-binding 29.5 31 0.001 19.8 2.0 26 71-96 19-53 (88)
138 2w1t_A Spovt, stage V sporulat 29.4 39 0.0013 23.8 2.8 20 45-64 20-39 (178)
139 2l76_A Nfatc2-interacting prot 29.1 88 0.003 19.8 4.2 48 29-77 32-79 (95)
140 1pzx_A Hypothetical protein AP 28.4 62 0.0021 23.7 3.9 55 30-95 37-92 (289)
141 3gs2_A E3 ubiquitin-protein li 28.1 1.3E+02 0.0044 19.7 8.6 66 29-94 22-109 (111)
142 1wia_A Hypothetical ubiquitin- 27.9 23 0.00077 21.2 1.2 55 31-93 21-77 (95)
143 1x4c_A Splicing factor, argini 27.9 80 0.0027 18.8 3.8 10 86-95 51-60 (108)
144 3d2w_A TAR DNA-binding protein 26.3 78 0.0027 18.4 3.5 36 61-96 14-59 (89)
145 2al3_A TUG long isoform; TUG U 25.9 86 0.0029 19.6 3.7 37 29-66 21-57 (90)
146 1fm0_D Molybdopterin convertin 25.1 45 0.0015 19.1 2.2 36 35-71 23-63 (81)
147 2xzm_9 RPS31E; ribosome, trans 24.4 16 0.00054 25.9 0.0 43 32-75 15-57 (189)
148 1wgh_A Ubiquitin-like 3, HCG-1 24.0 1.2E+02 0.004 19.5 4.2 48 29-76 28-82 (116)
149 2gow_A HCG-1 protein, ubiquiti 24.0 65 0.0022 21.0 3.0 48 29-76 29-83 (125)
150 2i2y_A Fusion protein consists 23.9 1.1E+02 0.0038 19.2 4.1 37 60-96 75-121 (150)
151 1ef1_A Moesin; membrane, FERM 23.7 1.4E+02 0.0048 21.1 5.0 30 29-58 12-41 (294)
152 1wgg_A Ubiquitin carboxyl-term 22.9 64 0.0022 19.5 2.7 55 32-93 22-78 (96)
153 2cqh_A IGF-II mRNA-binding pro 22.2 58 0.002 18.7 2.3 16 34-49 16-31 (93)
154 2dzj_A Synaptic glycoprotein S 21.8 51 0.0017 19.8 2.0 54 33-90 29-85 (88)
155 1se9_A Ubiquitin family; ubiqu 21.2 1.1E+02 0.0037 20.1 3.6 45 32-76 32-82 (126)
156 3rpf_C Molybdopterin convertin 21.0 54 0.0019 18.8 1.9 39 36-74 19-59 (74)
157 2q5w_D Molybdopterin convertin 20.9 40 0.0014 19.2 1.3 37 33-71 21-59 (77)
158 2dt8_A DEGV family protein; fa 20.8 1.3E+02 0.0046 21.7 4.5 56 30-95 35-91 (280)
159 3pl5_A SMU_165, putative uncha 20.5 96 0.0033 23.2 3.7 56 29-95 68-126 (320)
160 2cq4_A RNA binding motif prote 20.3 1.4E+02 0.0048 17.7 3.9 12 85-96 67-78 (114)
No 1
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=1.2e-46 Score=259.92 Aligned_cols=97 Identities=46% Similarity=0.756 Sum_probs=94.2
Q ss_pred cccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290 2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE 80 (99)
Q Consensus 2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~ 80 (99)
+.+++|||+ |||||||++++++|.|| |+|||||+++||+||+.+||+||+|++++||||||||++|+++++||+||++
T Consensus 27 ~~ir~kyP~rIPVIvEr~~~s~lP~Ld-K~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~ 105 (125)
T 3m95_A 27 EKIRRKYPDRVPVIVEKAPKARLGDLD-KKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQE 105 (125)
T ss_dssp HHHHHHCTTEEEEEEEECTTCSSCCCS-CCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHH
T ss_pred HHHHHHCCCeEEEEEEecCCCCCcccc-CCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHH
Confidence 457899999 99999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCeEEEEecCcccCC
Q 034290 81 KKDEDGFLYVTYSGENTFG 99 (99)
Q Consensus 81 ~kd~DGfLYl~Ys~~~~fG 99 (99)
|||+||||||+||+++|||
T Consensus 106 ~kdeDGfLY~~Ys~e~tfG 124 (125)
T 3m95_A 106 HHDEDFFLYIAFSDENVYG 124 (125)
T ss_dssp HCCTTSCEEEEEESSSCC-
T ss_pred cCCCCCeEEEEecCccccC
Confidence 9999999999999999999
No 2
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=1.8e-46 Score=256.83 Aligned_cols=97 Identities=64% Similarity=0.972 Sum_probs=95.0
Q ss_pred cccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290 2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE 80 (99)
Q Consensus 2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~ 80 (99)
+.+++|||+ ||||||+++++++|.|| |+|||||+++||+||+.+||+||+|++++||||||||++|+++++||+||++
T Consensus 21 ~~ir~kyP~riPVIvE~~~~~~~P~ld-k~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~ 99 (118)
T 3rui_B 21 ERIADRFKNRIPVICEKAEKSDIPEID-KRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQE 99 (118)
T ss_dssp HHHHHHCSSEEEEEEEECTTCCSCCCS-CCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHH
T ss_pred HHHHHhCCCceEEEEEeCCCCCCCccc-cceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHH
Confidence 357899999 99999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCeEEEEecCcccCC
Q 034290 81 KKDEDGFLYVTYSGENTFG 99 (99)
Q Consensus 81 ~kd~DGfLYl~Ys~~~~fG 99 (99)
|||+||||||+||+++|||
T Consensus 100 ~kdeDGfLyv~Ys~~~~fG 118 (118)
T 3rui_B 100 HKDKDGFLYVTYSGENTFG 118 (118)
T ss_dssp HCCTTSCEEEEEEECCCBC
T ss_pred cCCCCCeEEEEEeccccCC
Confidence 9999999999999999999
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=2.2e-46 Score=256.71 Aligned_cols=97 Identities=46% Similarity=0.795 Sum_probs=93.2
Q ss_pred cccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290 2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE 80 (99)
Q Consensus 2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~ 80 (99)
+.+++|||+ ||||||+++++++|.|| ++|||||+++||+||+.+||+||+|++++||||||||++|+++++||+||++
T Consensus 22 ~~ir~kyP~rIPVIvEr~~~~~~P~Ld-k~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~ 100 (119)
T 3h9d_A 22 AKVRERHPDRLPIICEKVYNSDIGELD-RCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSK 100 (119)
T ss_dssp HHHHHHSTTEEEEEEEECTTSSCCCCS-SCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHH
T ss_pred HHHHHHCCCeEEEEEEecCCCCCCccC-cceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHH
Confidence 457899999 99999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCeEEEEecCcccCC
Q 034290 81 KKDEDGFLYVTYSGENTFG 99 (99)
Q Consensus 81 ~kd~DGfLYl~Ys~~~~fG 99 (99)
|||+||||||+||+++|||
T Consensus 101 ~kd~DGfLyv~Ys~e~~fG 119 (119)
T 3h9d_A 101 YKDEDGFLYMKYSGEATFG 119 (119)
T ss_dssp HCCTTSCEEEEEECC-CC-
T ss_pred cCCCCCeEEEEEecccccC
Confidence 9999999999999999999
No 4
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=100.00 E-value=1.5e-43 Score=241.62 Aligned_cols=97 Identities=47% Similarity=0.779 Sum_probs=94.8
Q ss_pred cccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290 2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE 80 (99)
Q Consensus 2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~ 80 (99)
+.++++||+ ||||||+++++++|.|+ ++||+||.++||+||+.+||+||+|++++||||||||++|+++++||+||++
T Consensus 19 ~~ir~kyP~~IPVIve~~~~s~~p~l~-k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~ 97 (117)
T 1eo6_A 19 AKIRAKYPDRVPVIVEKVSGSQIVDID-KRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEK 97 (117)
T ss_dssp HHHHHHCTTEEEEEEEECTTCSSCCCS-CCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHH
T ss_pred HHHHHHCCCeEEEEEEecCCCCCCccc-ceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHH
Confidence 357899999 99999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCeEEEEecCcccCC
Q 034290 81 KKDEDGFLYVTYSGENTFG 99 (99)
Q Consensus 81 ~kd~DGfLYl~Ys~~~~fG 99 (99)
|||+||||||+||+++|||
T Consensus 98 ~kd~DGfLyi~Ys~~~~fG 116 (117)
T 1eo6_A 98 EKDEDGFLYVAYSGENTFG 116 (117)
T ss_dssp HCCTTSCEEEEEECCCCCC
T ss_pred hCCCCCEEEEEEeCCccCC
Confidence 9999999999999999999
No 5
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=100.00 E-value=5e-44 Score=248.20 Aligned_cols=97 Identities=28% Similarity=0.546 Sum_probs=94.7
Q ss_pred cccccCCCc-eEEEEEecCCCC-CCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEE-EEcCccCCCCchHHHHH
Q 034290 2 ETATMGIPF-FLFICMNSHKFY-IPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDNVLPPTGAIMSTIY 78 (99)
Q Consensus 2 ~~~~~~~p~-ipVIvE~~~~~~-lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl-~Vnn~lp~~~~~m~~lY 78 (99)
+.+++|||+ ||||||++++++ +|.|| |+|||||+++||+||+.+||+||+|++++|||| ||||++|+++++||+||
T Consensus 26 ~~ir~kyP~kIPVIvEk~~~s~~~P~Ld-k~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY 104 (130)
T 2zjd_A 26 RLIREQHPTKIPVIIERYKGEKQLPVLD-KTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVY 104 (130)
T ss_dssp HHHHHHCTTEEEEEEEECTTCCSSCCCS-CCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHH
T ss_pred HHHHHhCCCceEEEEEEcCCCCcCcccc-ccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHH
Confidence 457899999 999999999999 99999 999999999999999999999999999999999 99999999999999999
Q ss_pred hhhcCCCCeEEEEecCcccCC
Q 034290 79 DEKKDEDGFLYVTYSGENTFG 99 (99)
Q Consensus 79 ~~~kd~DGfLYl~Ys~~~~fG 99 (99)
++|||+||||||+||+++|||
T Consensus 105 ~~~kdeDGfLyv~Ys~e~tfG 125 (130)
T 2zjd_A 105 ESEKDEDGFLYMVYASQETFG 125 (130)
T ss_dssp HHHCCTTSCEEEEEEEHHHHH
T ss_pred HHhCCCCCEEEEEEeCCcccC
Confidence 999999999999999999998
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=100.00 E-value=6.8e-40 Score=221.29 Aligned_cols=92 Identities=46% Similarity=0.759 Sum_probs=89.3
Q ss_pred cccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290 2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE 80 (99)
Q Consensus 2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~ 80 (99)
+.++++||+ ||||||+++++++|.|+ ++||+||.++||+||+.+||++|+|++++||||||||++|+++++||+||++
T Consensus 18 ~~ir~k~p~~IPVive~~~~~~~p~l~-k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~ 96 (110)
T 2r2q_A 18 EKIRKKYPDRVPVIVEKAPKARVPDLD-KRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYED 96 (110)
T ss_dssp HHHHHHCTTEEEEEEEECTTCCSCCCS-CCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHH
T ss_pred HHHHHhCCCceEEEEEecCCCCCCccc-eeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHH
Confidence 357899999 99999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCeEEEEecC
Q 034290 81 KKDEDGFLYVTYSG 94 (99)
Q Consensus 81 ~kd~DGfLYl~Ys~ 94 (99)
|||+||||||+||+
T Consensus 97 ~kd~DGfLyi~Ys~ 110 (110)
T 2r2q_A 97 NHEEDYFLYVAYSD 110 (110)
T ss_dssp HCCTTSCEEEEEEC
T ss_pred cCCCCCEEEEEEeC
Confidence 99999999999985
No 7
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=100.00 E-value=2e-35 Score=194.13 Aligned_cols=85 Identities=22% Similarity=0.340 Sum_probs=79.2
Q ss_pred EEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCc-cCCCCchHHHHHhhhcCCCCeEEEE
Q 034290 13 FICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSTIYDEKKDEDGFLYVT 91 (99)
Q Consensus 13 VIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~-lp~~~~~m~~lY~~~kd~DGfLYl~ 91 (99)
|+|--.+-+++|.|+ ++||+||+++||+||+.+||+||+|++++||||||||+ +|++|++||+||++|| +||||||+
T Consensus 6 v~v~fk~~g~~P~l~-k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLyv~ 83 (91)
T 4gdk_A 6 IDILLKAVGDTPIMK-TKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLVLH 83 (91)
T ss_dssp EEEEEEECSSSCCCS-CCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEEEE
T ss_pred EEEEEEecCCCCccc-ccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEEEE
Confidence 444444568999999 99999999999999999999999999999999999996 7999999999999999 99999999
Q ss_pred ecCcccCC
Q 034290 92 YSGENTFG 99 (99)
Q Consensus 92 Ys~~~~fG 99 (99)
||+++|||
T Consensus 84 Ys~~~afG 91 (91)
T 4gdk_A 84 YCKSQAWG 91 (91)
T ss_dssp EESSCCCC
T ss_pred EeCccccC
Confidence 99999999
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=100.00 E-value=1.2e-33 Score=187.22 Aligned_cols=83 Identities=16% Similarity=0.291 Sum_probs=77.7
Q ss_pred ceEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcC-ccCCCCchHHHHHhhhcCCCCeE
Q 034290 10 FFLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSTIYDEKKDEDGFL 88 (99)
Q Consensus 10 ~ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd~DGfL 88 (99)
.|+|+++.. +++|.|+ |+||+||+++||++|+.+||+||+++ +||||||| .+|++|++|++||++||| ||||
T Consensus 13 KV~V~~~~~--~~~P~l~-k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGfL 85 (96)
T 1wz3_A 13 KIVVHLRAT--GGAPILK-QSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGKL 85 (96)
T ss_dssp EEEEEEEEC--TTCCCCS-CCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTBE
T ss_pred eEEEEEEEC--CCCCccc-ccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCEE
Confidence 388888775 5699999 99999999999999999999999998 99999999 799999999999999999 9999
Q ss_pred EEEecCcccCC
Q 034290 89 YVTYSGENTFG 99 (99)
Q Consensus 89 Yl~Ys~~~~fG 99 (99)
||+||+++|||
T Consensus 86 yi~Ys~~~afG 96 (96)
T 1wz3_A 86 VVNYACSMAWG 96 (96)
T ss_dssp EEEEESCSCC-
T ss_pred EEEEeCCcccC
Confidence 99999999999
No 9
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=99.98 E-value=1.2e-32 Score=180.95 Aligned_cols=82 Identities=13% Similarity=0.248 Sum_probs=65.2
Q ss_pred EEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCc-cCCCCchHHHHHhhhcCCCCeEEEE
Q 034290 13 FICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSTIYDEKKDEDGFLYVT 91 (99)
Q Consensus 13 VIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~-lp~~~~~m~~lY~~~kd~DGfLYl~ 91 (99)
|.|--.+-+++|.|+ ++||+||+++|+++|+.+||+||++ ++|||||||+ +|++|++||+||++|| +||||||+
T Consensus 9 v~vrfk~~g~~P~l~-k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~Lyv~ 83 (91)
T 3w1s_C 9 IQIKFQPIGSIGQLK-PSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDELIVS 83 (91)
T ss_dssp EEEEEEECCC--------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTEEEEE
T ss_pred EEEEEEecCCCCccc-ccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCEEEEE
Confidence 344333557899999 9999999999999999999999999 7999999995 7999999999999999 79999999
Q ss_pred ecCcccCC
Q 034290 92 YSGENTFG 99 (99)
Q Consensus 92 Ys~~~~fG 99 (99)
||+++|||
T Consensus 84 Ys~~~afG 91 (91)
T 3w1s_C 84 YCASVAFG 91 (91)
T ss_dssp EEC---CC
T ss_pred EeCccccC
Confidence 99999999
No 10
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=95.19 E-value=0.061 Score=34.11 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=41.2
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 76 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~ 76 (99)
.-+|.|+.+.+|.+++..-|++-+++++.++.|..++.-..+++++.+
T Consensus 21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~D 68 (82)
T 3goe_A 21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQS 68 (82)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGG
T ss_pred CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhh
Confidence 667999999999999999999999999999999999875555555544
No 11
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=92.96 E-value=0.096 Score=39.92 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=38.0
Q ss_pred chHHHHHHHHHhhc-cCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 39 TVGQFVYVIRKRIK-LSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 39 tv~~f~~~irk~l~-l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
|+++++.- +..+. +-++.+..+.+++..++.++.+..||++++..||||||.-.
T Consensus 231 TLgd~L~~-~~~lp~lf~~~~~~viihGI~vpl~~pl~wl~~~l~~pDgFLhIvv~ 285 (297)
T 2dyo_A 231 TLKDIEGD-ILDVKEGINGNDVMVICQGIEIPWHMLLYDLYSKLRSFDGFLYITLV 285 (297)
T ss_dssp BTGGGHHH-HSCTTTC----CEEEEETTEEECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred CHHHHHhh-hhhccccCCCCCCeEEEeCccCCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence 77765510 22221 22344468888898888999999999999999999999865
No 12
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=92.82 E-value=0.077 Score=40.05 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=47.7
Q ss_pred CCCceEEEEEecCCCCCCcccceeeEEecC---CCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC
Q 034290 7 GIPFFLFICMNSHKFYIPTCLQCCRYLVPA---DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD 83 (99)
Q Consensus 7 ~~p~ipVIvE~~~~~~lp~l~~k~Kflvp~---~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd 83 (99)
++-.|||.|-... + |.+. -+|+. ..|+++++.. .+-- ......+++++..++.++.|.+||+++..
T Consensus 196 ~~r~IPiRIy~~~-~--~~iQ----~~i~~~~~~~TLg~~L~~---~lp~-l~~~~~~iihGi~vp~~~pl~~l~~~~~y 264 (274)
T 3vqi_A 196 KAKSLPVRVWTSN-Y--AVLQ----PTVPVTDKELSVAELLDS---IKLS-SDGVKSVIIQGIDVSIEDNIFELYDIFAS 264 (274)
T ss_dssp GCSBCCEEEECTT-S--CEEC----CCCBCC---CBHHHHHHT---TTCC-C--CCEEEETTEEEETTSBHHHHHHHHCC
T ss_pred cccceeEEEEcCC-C--CeEe----cccCCCCccccHHHHHHH---hccc-cccceEEEEeCccCCCCCcHHHHHHHccC
Confidence 3445999887632 2 2222 13443 6677776553 3320 01233467778788999999999999999
Q ss_pred CCCeEEEE
Q 034290 84 EDGFLYVT 91 (99)
Q Consensus 84 ~DGfLYl~ 91 (99)
.||||||.
T Consensus 265 ~DgFLhiv 272 (274)
T 3vqi_A 265 IDGFLYLV 272 (274)
T ss_dssp TTSCEEEE
T ss_pred CCceEEEE
Confidence 99999986
No 13
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=92.63 E-value=0.14 Score=38.74 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=49.4
Q ss_pred CCCceEEEEEecCCCCCCcccceeeEEec------CCCchHHHHHHHHHhhc-c-C---ccceEEEEEcCccCCCCchHH
Q 034290 7 GIPFFLFICMNSHKFYIPTCLQCCRYLVP------ADLTVGQFVYVIRKRIK-L-S---AEKAIFIFVDNVLPPTGAIMS 75 (99)
Q Consensus 7 ~~p~ipVIvE~~~~~~lp~l~~k~Kflvp------~~~tv~~f~~~irk~l~-l-~---~~~slfl~Vnn~lp~~~~~m~ 75 (99)
.+-.|||.|-.. .++-|.+. + +|+ +..|+++.+..+ +- + + ......+++++..++.++.|.
T Consensus 181 ~~r~IPvRiY~~-~~~~~~iQ-~---~v~p~~~~g~~~TLg~~L~~~---lP~lf~~~~~~~~~~viihGI~~pl~~pl~ 252 (275)
T 4gdk_B 181 GFRYIPFRIYQT-TTERPFIQ-K---LFRPVAADGQLHTLGDLLKEV---CPSAIDPEDGEKKNQVMIHGIEPMLETPLQ 252 (275)
T ss_dssp SCSSCCEEEECT-TSSSSEEC-C---CCCSBCTTSCBCBHHHHHHHH---CGGGCC------CEEEEBTTBCCCTTSBHH
T ss_pred ccccceEEEEec-CCCCCccc-c---CcCCcCCCCCcccHHHHHHHh---cccccCCCcccccceEEEeCCcCCCCCCHH
Confidence 345599999642 12222222 1 111 235777765543 31 1 1 113455677787899999999
Q ss_pred HHHhhhcCCCCeEEEEec
Q 034290 76 TIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 76 ~lY~~~kd~DGfLYl~Ys 93 (99)
+||++.+..||||||.-.
T Consensus 253 ~l~~~l~y~DgFLhI~v~ 270 (275)
T 4gdk_B 253 WLSEHLSYPDNFLHISII 270 (275)
T ss_dssp HHHHHSCCTTSCEEEEEE
T ss_pred HHHHhccCCCceEEEEEE
Confidence 999999999999999754
No 14
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=89.16 E-value=1.3 Score=25.85 Aligned_cols=60 Identities=8% Similarity=0.047 Sum_probs=42.2
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY 92 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Y 92 (99)
...+-|.++.||+++...+..+.++++++--++ .++.....+.+++++- - .++..|++..
T Consensus 15 ~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~-~~G~~L~d~~tl~~~~--i-~~~~~i~l~~ 74 (79)
T 2uyz_B 15 EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEGQRIADNHTPKELG--M-EEEDVIEVYQ 74 (79)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTCCHHHHT--C-CTTEEEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEEE-ECCEEeCCCCCHHHcC--C-CCCCEEEEEE
Confidence 345679999999999999999999998764444 4665556777887752 1 1233666654
No 15
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.36 E-value=1.3 Score=26.24 Aligned_cols=58 Identities=7% Similarity=0.000 Sum_probs=41.7
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEec
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 93 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys 93 (99)
.+-|+.+.||+++...|.++.++++++- -|+.++.....+.++++. .- ++..|++...
T Consensus 21 ~~~v~~~~tV~~lK~~i~~~~gi~~~~q-rL~~~Gk~L~d~~tL~~~----~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 21 AYAINPNSFILGLKQQIEDQQGLPKKQQ-QLEFQGQVLQDWLGLGIY----GIQDSDTLILSKK 79 (87)
T ss_dssp EEEECSSSBHHHHHHHHHHHTCCCTTTE-EEEETTEECCSSSBHHHH----TCCTTEEEEEEEC
T ss_pred EEEeCCCChHHHHHHHHHHHhCCChHHE-EEEECCEEccCCCCHHHC----CCCCCCEEEEEEe
Confidence 4568999999999999999999987653 444566655677788765 22 3346777654
No 16
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=87.99 E-value=1.7 Score=26.15 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=38.8
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
...|.|.++.+++.++...+++.++++++--|+| ++.....+.|.+++
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l 67 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL 67 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 3468899999999999999999999988655666 55555667788877
No 17
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=87.83 E-value=1.3 Score=25.17 Aligned_cols=59 Identities=5% Similarity=-0.018 Sum_probs=41.4
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEec
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 93 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys 93 (99)
..+-|+.+.||+++...|.++.++++++ .-|+.++.....+.++++. .- ++..+++...
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 13 IEIDIEPTDKVERIKERVEEKEGIPPQQ-QRLIYSGKQMNDEKTAADY----KILGGSVLHLVLA 72 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 3456899999999999999999998765 4455576655666677653 22 3446776653
No 18
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=87.40 E-value=1 Score=26.44 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=42.5
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
...+-|+.+.||+++...|.++.++++++- -|+.++.....+.++++. .- .++..|++...
T Consensus 15 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q-rL~~~g~~L~d~~tL~~~--~i-~~~~~l~l~~r 75 (85)
T 3mtn_B 15 TITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NI-QKWSTLFLLLR 75 (85)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTGGG--TC-CTTCEEEEECC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCCHHHc--CC-CCCCEEEEEEE
Confidence 334568999999999999999999987653 344577666667777763 11 23446776543
No 19
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=87.25 E-value=1.1 Score=26.42 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=42.3
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
..+-|+.+.||+++...|.++.++++++ .-|+.++.....+.+|++. .- .++..|++...
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~-qrL~~~g~~L~d~~tL~~~--~i-~~~~~i~l~~r 75 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY--NI-HNHSALYLLLK 75 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETBEECCTTCBTTTT--TC-CTTCEEEEEEC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCeECCCCCCHHHC--CC-CCCCEEEEEEe
Confidence 3456899999999999999999998865 4455577666667777763 11 23447777653
No 20
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.17 E-value=1.7 Score=25.97 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=40.4
Q ss_pred ecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 34 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 34 vp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
|+.+.||+++...|..+.++++++- -|+.++.....+.+|++.= - .++..|++...
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~gk~L~d~~tL~~~~--i-~~g~~i~l~~~ 81 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPECQ-RLFYRGKQLENGYTLFDYD--V-GLNDIIQLLVR 81 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTTE-EEEETTEECCSSSBHHHHT--C-CTTCEEEEEEC
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhE-EEEECCeECCCCCCHHHCC--C-CCCCEEEEEEe
Confidence 8999999999999999999987653 4445666556777887651 1 13447777654
No 21
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=87.11 E-value=1.4 Score=25.04 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=40.9
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEec
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 93 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys 93 (99)
..+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .- ++..+++...
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY----NIQRESTLHLVLR 72 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHH-eEEEECCeECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 3456899999999999999999998765 4455566654556677653 22 3446776543
No 22
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=86.77 E-value=0.98 Score=30.25 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=41.6
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCc-cceEEEEEcC---c----cCCCCchHHHHHhhhcC
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSA-EKAIFIFVDN---V----LPPTGAIMSTIYDEKKD 83 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~-~~slfl~Vnn---~----lp~~~~~m~~lY~~~kd 83 (99)
.-|-|.+++|+++|...|-+.+++++ ...|+..+|. + ++.++.+|++.+..+.+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~~~~~ 119 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD 119 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTHHHHT
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHHHhhc
Confidence 35889999999999999999999986 4777888763 2 34556677777766544
No 23
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=85.84 E-value=3 Score=26.77 Aligned_cols=61 Identities=15% Similarity=0.094 Sum_probs=43.9
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
+..+-|+++.||+++...|..+-++++++- -|..+++....+.+|++ |.-. +...|.|.|.
T Consensus 40 ~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQ-rLi~~Gk~L~D~~TL~d-ygI~--~gstlhL~~~ 100 (100)
T 1uh6_A 40 KVRVKCNTDDTIGDLKKLIAAQTGTRWNKI-VLKKWYTIFKDHVSLGD-YEIH--DGMNLELYYQ 100 (100)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCSSCBHHH-HTCC--TTEEEEEECC
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCHHHE-EEEECCEECCCCCCHHH-cCCC--CCCEEEEEeC
Confidence 334568999999999999999999987653 34455665677888887 3321 2347888884
No 24
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=85.18 E-value=2.3 Score=24.77 Aligned_cols=59 Identities=7% Similarity=0.005 Sum_probs=41.8
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY 92 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Y 92 (99)
..+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++.- -.++..|++..
T Consensus 17 ~~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~~---i~~~~~l~l~~ 75 (79)
T 3phx_B 17 STYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEYG---LKPLSTVFMNL 75 (79)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGGT---CCTTCEEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhcCCCHHHE-EEEECCEECCCCCcHHHCC---CCCCCEEEEEE
Confidence 34569999999999999999999987753 4555776666677777631 12344677654
No 25
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.60 E-value=1.2 Score=25.93 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=33.8
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 76 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~ 76 (99)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.++++
T Consensus 21 ~~~v~~~~tV~~LK~~i~~~~~i~~~~q-rL~~~gk~L~d~~tL~~ 65 (81)
T 2dzi_A 21 SLQVPEDELVSTLKQLVSEKLNVPVRQQ-RLLFKGKALADGKRLSD 65 (81)
T ss_dssp EEEECSSCBHHHHHHHHHHHTCCCTTTC-EEEETTEECCTTSBGGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHE-EEEECCeECCCCCcHHH
Confidence 4568999999999999999999987643 34446665556677765
No 26
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=84.26 E-value=3.2 Score=25.60 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=43.2
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
...+-|..+.||+++...|..+.++++++--++| ++.....+.+++++- -+ ++..|++...
T Consensus 33 ~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~dy~--i~-~g~~I~l~~~ 93 (97)
T 1wyw_B 33 EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDVIEVYQE 93 (97)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTCEEEEEES
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHHCC--CC-CCCEEEEEEe
Confidence 3446699999999999999999999987644444 665556777888752 11 2336776654
No 27
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=83.83 E-value=2.4 Score=25.53 Aligned_cols=60 Identities=8% Similarity=-0.036 Sum_probs=42.2
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEecC
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG 94 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys~ 94 (99)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++.= -+ ++..|++....
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~Gk~L~D~~tL~~~~--I~-~g~~i~l~~~~ 77 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFW-LTFEGKPLEDQLPLGEYG--LK-PLSTVFMNLRL 77 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHTCSCTTTEE-EESSSSCCCTTSBHHHHH--CS-TTCEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEE-EEECCEECCCCCcHHHcC--CC-CCCEEEEEEEc
Confidence 35589999999999999999999876543 444666556777887752 12 34478777653
No 28
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=83.81 E-value=2.6 Score=26.65 Aligned_cols=62 Identities=11% Similarity=0.213 Sum_probs=43.6
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEE-EEcC----ccCCCCchHH---HHHhhhcCCCCeEEE
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDN----VLPPTGAIMS---TIYDEKKDEDGFLYV 90 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl-~Vnn----~lp~~~~~m~---~lY~~~kd~DGfLYl 90 (99)
-..+-||.+.++.++...||.+.++.+.+.+-+ |++. ...+.+..|. ++|+-.++..=.||+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihv 86 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHV 86 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEEE
Confidence 445779999999999999999999988887766 4543 1346666664 466666654433443
No 29
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=83.74 E-value=1.9 Score=25.34 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=36.5
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
...|.|.++.+++.++....++.++++++--|+|=+..+ .++.|.+++
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l 60 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 60 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 456889999999999999999999998776677644444 444555544
No 30
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=83.49 E-value=2.6 Score=24.18 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=40.2
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEe
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTY 92 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Y 92 (99)
..+-|+.+.||+++...|..+.+++++. .-|+.++.....+.++++. .- ++..|++.-
T Consensus 16 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~-qrL~~~gk~L~d~~tL~~~----~i~~g~~i~l~~ 74 (77)
T 2bwf_A 16 WEVNVAPESTVLQFKEAINKANGIPVAN-QRLIYSGKILKDDQTVESY----HIQDGHSVHLVK 74 (77)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBTGGG----TCCTTCEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCCHHH-EEEEECCeEcCCCCCHHHc----CCCCCCEEEEEE
Confidence 3456899999999999999999998765 3444566655566677653 22 334666654
No 31
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=83.47 E-value=3.1 Score=25.11 Aligned_cols=58 Identities=10% Similarity=-0.005 Sum_probs=40.2
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCcc-CCCCchHHHHHhhhcCCCCeEEEEe
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKDEDGFLYVTY 92 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~l-p~~~~~m~~lY~~~kd~DGfLYl~Y 92 (99)
..-|+.+.||+++...|..+.++++++ .-|+.+++. ...+.+|++.= - .++..|++..
T Consensus 24 ~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~lL~D~~tL~~y~--I-~~gs~i~lv~ 82 (84)
T 2kk8_A 24 ELEVDYRDTLLVVKQKIERSQHIPVSK-QTLIVDGIVILREDLTVEQCQ--I-VPTSDIQLEV 82 (84)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGG-EEEEETTEECCCSSSBHHHHT--C-CTTSCEEEEE
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEEecCCcCCHHHcC--C-CCCCEEEEEE
Confidence 345899999999999999999998765 344456655 67777887641 1 1333566543
No 32
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=83.24 E-value=2.5 Score=25.53 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=42.6
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.+|++.= - .++..|++...
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~-qrL~~~G~~L~d~~tL~~~~--i-~~~~~i~l~~r 73 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDYN--I-QKESTLHLVLR 73 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBTGGGT--C-CTTCEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhH-EEEEECCEECCCCCcHHHcC--C-CCCCEEEEEEE
Confidence 456899999999999999999998765 45556776666777777641 1 23447777654
No 33
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=83.22 E-value=3.4 Score=25.24 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=41.6
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY 92 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Y 92 (99)
...+-|+.+.||+++...|..+.++++++- -|+.+++....+.+|++.= - .++..|++..
T Consensus 29 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~y~--I-~~gstI~lv~ 88 (93)
T 2l7r_A 29 LHTFEVTGQETVAQIKAHVASLEGIAPEDQ-VVLLAGAPLEDEATLGQCG--V-EALTTLEVAG 88 (93)
T ss_dssp EEEEECCSSCBHHHHHHHHHHHHTCCGGGC-EEEETTEECCTTSBHHHHT--C-CSSCEEEEEC
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCcChhHE-EEEECCEECCCCCcHHHCC--C-CCCCEEEEEE
Confidence 444668999999999999999999987653 3445666556777887651 1 1334666654
No 34
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=82.76 E-value=2.8 Score=26.17 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=42.3
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEecC
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG 94 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys~ 94 (99)
.+-|+.+.||+++...|.++.++++++ .-|+.+++....+.+|++.= -+ ++..|++....
T Consensus 35 ~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~L~D~~tL~~yg--I~-~gstI~l~~r~ 94 (100)
T 1yqb_A 35 DFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQCG--VR-DGLTVHLVIKR 94 (100)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGG-EEEEETTEECCTTSBHHHHT--CC-TTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHCC--CC-CCCEEEEEEcC
Confidence 455899999999999999999998764 44455676666777887651 11 23467776543
No 35
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.31 E-value=3 Score=26.03 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=41.6
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCC-CCeEEEEec
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYS 93 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~-DGfLYl~Ys 93 (99)
.+-|+.+.||+++...|..+.++++++ .-|+.+++....+.+|+++ .-. +..|+|...
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~ 88 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQC----GVRDGLTVHLVIK 88 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTT-EEEEETTEECCTTSCHHHH----TCCTTEEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHc----CCCCCCEEEEEEc
Confidence 455899999999999999999998754 4455677666677788765 222 336777654
No 36
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=82.15 E-value=2.9 Score=24.97 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=41.6
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++.- -++..|+|...
T Consensus 19 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rLi~~Gk~L~d~~tL~~~~----i~g~~i~l~~~ 76 (90)
T 4dwf_A 19 TFIVGAQMNVKEFKEHIAASVSIPSEKQ-RLIYQGRVLQDDKKLQEYN----VGGKVIHLVER 76 (90)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGGT----CTTEEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHE-EEEECCeECCCCCCHHHcC----CCCcEEEEEec
Confidence 4568999999999999999999987654 3444766666777887632 22446666654
No 37
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=81.92 E-value=2.9 Score=25.55 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=41.5
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEecC
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG 94 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys~ 94 (99)
.+-|+.+.||+++...|.++.+++++. .-|+.+++....+.++++.= - .++..|++....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~-qrL~~~Gk~L~D~~tL~~~g--i-~~g~~i~l~~~~ 73 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDYN--I-QKESTLHLVLRL 73 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGG-EEEEETTEECCTTSBTGGGT--C-CTTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCCCCHHHcC--C-CCCCEEEEEEeC
Confidence 456889999999999999999998765 34455666555666776531 1 134477776543
No 38
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=80.86 E-value=2.8 Score=24.72 Aligned_cols=59 Identities=3% Similarity=-0.028 Sum_probs=41.4
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY 92 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Y 92 (99)
..+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++. .-+ ++..|++..
T Consensus 25 ~~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~--~i~-~~~~i~l~~ 83 (88)
T 3dbh_I 25 IEIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQMNDEKTAADY--KIL-GGSVLHLVL 83 (88)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGC-CEEETTEECCTTSBGGGG--TCC-TTCEEEECC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcCHHHE-EEEECCeECCCCCcHHHc--CCC-CCCEEEEEE
Confidence 34569999999999999999999987643 344476666667788774 122 344666653
No 39
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=80.58 E-value=8.4 Score=24.46 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=42.7
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCC-eEEEEe
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG-FLYVTY 92 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DG-fLYl~Y 92 (99)
+..+-|.++.||++|...|..+.++++++-.-.| +++....+.+|+ .|.=.|| -|.|.|
T Consensus 33 k~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~LkD~~TL~----dY~I~dgstLhL~~ 92 (93)
T 3plu_A 33 KVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSVLKDHISLE----DYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBTG----GGTCCTTCEEEEEE
T ss_pred EEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEEccCcCCHH----HcCCCCCCEEEEEe
Confidence 5567799999999999999999999987644444 666667777775 3443333 566655
No 40
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=80.43 E-value=2.6 Score=26.27 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=36.6
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
...|.|.++.+++.++...+++.++++++--|+| ++....++.|.+++
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~l~~~~Tp~dl 64 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 64 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE-TTEECCTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 4568899999999999999999999987655666 54434455566554
No 41
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=80.36 E-value=2.5 Score=24.46 Aligned_cols=57 Identities=7% Similarity=-0.014 Sum_probs=39.1
Q ss_pred eEE-ecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEe
Q 034290 31 RYL-VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTY 92 (99)
Q Consensus 31 Kfl-vp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Y 92 (99)
.+- |+.+.||+++...|..+.++++++- -|+.++.....+.++++. .- ++..|++..
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~~q-rL~~~g~~L~d~~tL~~~----~i~~g~~i~l~~ 75 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPGLQ-RLFYRGKQMEDGHTLFDY----EVRLNDTIQLLV 75 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTTTT----TCCTTCEEEEEE
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCCHHHc----CCCCCCEEEEEE
Confidence 344 8999999999999999999987653 344466655566676553 22 334666654
No 42
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=80.32 E-value=4.4 Score=26.23 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=38.8
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
...|-|.++.+++.++....++.++++.+--|+| ++.....+.|.+++
T Consensus 38 ~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~L~~~~Tp~dl 85 (110)
T 2k8h_A 38 EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTPIDETKTPEEL 85 (110)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCBCCSSSHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 4468899999999999999999999988655666 55545567888887
No 43
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=79.86 E-value=4 Score=25.13 Aligned_cols=58 Identities=10% Similarity=-0.018 Sum_probs=39.9
Q ss_pred EEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCC-chHHHHHhhhcCCCCeEEEEec
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~-~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
.-|+.+.||+++...|..+.++++++ .-|+.+++....+ .+|++.= - .++..|+|...
T Consensus 29 l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~L~D~~~tL~~yg--I-~~gstl~lv~r 87 (94)
T 2kan_A 29 VEVDRTETVSSLKDKIHIVENTPIKR-MQLYYSGIELADDYRNLNEYG--I-TEFSEIVVFLK 87 (94)
T ss_dssp EEECTTCBHHHHHHHHHHHSSSCTTT-EEEEETTEEECCTTSBHHHHT--C-CTTEEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHH-EEEEECCEECCCCcccHHHCC--C-CCCCEEEEEEe
Confidence 45899999999999999999998764 3444566655556 7777641 1 13346776654
No 44
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=79.83 E-value=4 Score=24.25 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=35.4
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 76 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~ 76 (99)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++
T Consensus 31 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rLi~~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 31 TFIVGAQMNVKEFKEHIAASVSIPSEKQ-RLIYQGRVLQDDKKLQE 75 (88)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGG
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHE-EEEECCEECCCCCcHHH
Confidence 4568999999999999999999987654 44447666667778776
No 45
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=79.37 E-value=2.8 Score=25.77 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=40.6
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEe
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTY 92 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Y 92 (99)
..+-|+.+.||+++...|.++.++++++- -|+.++.....+.+|++. .- ++..|++..
T Consensus 35 ~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----~i~~g~~i~l~~ 93 (98)
T 4hcn_B 35 ITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVL 93 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBSGGG----TCCTTEEEEEEC
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCChhHE-EEEECCEECCCCCcHHHC----CCCCCCEEEEEE
Confidence 34568999999999999999999987653 344576666677777763 22 233566543
No 46
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=78.88 E-value=3.1 Score=25.05 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=39.0
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEe
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTY 92 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Y 92 (99)
.+-|+.+.||+++...|..+.+++++.- -|+.+++....+.++++. .- ++..|++..
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~ 80 (88)
T 1sif_A 23 TVEMEPSDTIENLKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVL 80 (88)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBSGGG----TCCTTCEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCcHHHc----CCCCCCEEEEEE
Confidence 3458999999999999999999987643 344466554556677653 22 233666654
No 47
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=77.91 E-value=2.2 Score=25.77 Aligned_cols=56 Identities=9% Similarity=0.021 Sum_probs=38.0
Q ss_pred EEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCC-CCeEEEEe
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTY 92 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~-DGfLYl~Y 92 (99)
.-|+.+.||+++...|..+.+++++.- -|+.+++....+.+|++. .-. +..|++..
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~l~l~~ 82 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQ-KLIFKGKVLVETSTLKQS----DVGSGAKLMLMA 82 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTC-EEEETTEECCTTCBTTTT----TCCTTEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCeECCCcCCHHHC----CCCCCCEEEEEE
Confidence 458999999999999999999987542 334566655666666553 222 33566654
No 48
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=77.68 E-value=4.7 Score=24.21 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=39.7
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEE
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVT 91 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~ 91 (99)
.+-|+.+.||+++...|.++.++++++- -|+.++.....+.++++. .- ++..|++.
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~ 87 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLV 87 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBTGGG----TCCTTCEEEEE
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhhE-EEEECCeECCCcCcHHHC----CCCCCCEEEEE
Confidence 4558999999999999999999987653 344566666677777763 22 23366654
No 49
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=77.37 E-value=12 Score=24.11 Aligned_cols=60 Identities=8% Similarity=0.060 Sum_probs=42.5
Q ss_pred eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290 11 FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 76 (99)
Q Consensus 11 ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~ 76 (99)
+-|-||....+. . .-.+-|.++.||+++...|..+.++++..-= ++.++.+...+.+|++
T Consensus 25 l~v~v~d~~s~~----~-~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~~ 84 (105)
T 4dbg_A 25 LWVSVEDAQMHT----V-TIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLHS 84 (105)
T ss_dssp EEEEEEESSSCC----E-EEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTGG
T ss_pred EEEEEEccCCCC----c-eEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHHH
Confidence 455666544322 1 4456699999999999999999999986443 4456677777788865
No 50
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=77.30 E-value=4.7 Score=24.26 Aligned_cols=59 Identities=3% Similarity=-0.027 Sum_probs=41.4
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++. .- .++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~--~i-~~g~~l~l~~r 72 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQMNDEKTAADY--KI-LGGSVLHLVLA 72 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTTTT--TC-CTTCEEEEECB
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHE-EEEECCeECCCCCcHHHc--CC-CCCCEEEEEEE
Confidence 4558999999999999999999987653 344466666667788764 11 13446776643
No 51
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=75.99 E-value=7.9 Score=24.57 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=38.2
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
..|.|.++.+++.++..-+++.+++.+.--|+| ++....+++|..+|
T Consensus 39 v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~rI~~~~TP~dL 85 (97)
T 2jxx_A 39 LEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTKLSGRELPADL 85 (97)
T ss_dssp EEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEECCSCSCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 468899999999999999999999988655555 66555667788877
No 52
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=75.60 E-value=5.6 Score=25.05 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=40.4
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEec
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 93 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys 93 (99)
.+-|+.+.||+++...|.++.+++++.- -|+.+++....+.+|++. .- ++..|++...
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----gI~~gs~I~l~~r 107 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 107 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTE-EEEETTEECCSSCBTTTT----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccE-EEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 4568999999999999999999987653 444566655566777654 22 3446766543
No 53
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=75.55 E-value=5 Score=25.38 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=40.9
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY 92 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Y 92 (99)
..+-|+.+.||+++...|.++.+++++.- -|+.+++....+.+|+++= - .++..|++..
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~g--I-~~gs~I~l~~ 106 (111)
T 3vdz_A 48 ITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDYN--I-QKESTLHLVL 106 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTTTTT--C-CTTCEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCChHHE-EEEECCEECCCCCcHHHCC--C-CCCCEEEEEE
Confidence 34568999999999999999999987653 4445666666667776631 1 2344666654
No 54
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=75.18 E-value=5.6 Score=24.03 Aligned_cols=57 Identities=9% Similarity=0.103 Sum_probs=38.5
Q ss_pred ecCCCchHHHHHHHHHhh--ccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290 34 VPADLTVGQFVYVIRKRI--KLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY 92 (99)
Q Consensus 34 vp~~~tv~~f~~~irk~l--~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Y 92 (99)
|+.+.||+++...|..+. ++++++- =|+.+++....+.+|++....-+ ++-.|+|..
T Consensus 26 v~~~~TV~~lK~~I~~~~~~~i~~~~Q-rLi~~Gk~L~D~~tL~~~~~~i~-~~~~i~lv~ 84 (93)
T 1wgd_A 26 GDRGWSVGHLKAHLSRVYPERPRPEDQ-RLIYSGKLLLDHQCLRDLLPKQE-KRHVLHLVC 84 (93)
T ss_dssp CCTTSCHHHHHHHHHHHSTTCCCTTTC-EEEETTEECCSSSCHHHHSCSSS-CSEEEEEEC
T ss_pred cCCCCcHHHHHHHHHHHhcCCCChHHe-EEEECCEECcCcCCHHHHhcCCC-CCCEEEEEe
Confidence 569999999999999998 8876543 34456666667778887542222 233566654
No 55
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.71 E-value=5.4 Score=24.16 Aligned_cols=48 Identities=17% Similarity=0.357 Sum_probs=35.5
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
...+-|+.+.||+++...|..+.++++++-- |+.+++....+.+|++.
T Consensus 28 ~~~~~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~Gk~L~D~~tL~~~ 75 (96)
T 1wx8_A 28 CHEFFLAENSNVRRFKKQISKYLHCNADRLV-LIFTGKILRDQDILSQR 75 (96)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHTCSCTTTBC-CEETTEECCTTSCHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCEECCCcCCHHHC
Confidence 3345689999999999999999999876433 33466555677788773
No 56
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=74.53 E-value=10 Score=22.00 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=46.5
Q ss_pred CCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHh---hccCccceEEEEEcCccCCCCchHHHHHhhhcC
Q 034290 8 IPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKR---IKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD 83 (99)
Q Consensus 8 ~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~---l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd 83 (99)
.|. +-|.|..... + ...+-|+.+.||+++...|..+ -++++++ .-|+.++.....+.+|++. .-
T Consensus 2 ~~~~m~i~vk~~~g-~------~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~----~i 69 (85)
T 2wyq_A 2 IPMAVTITLKTLQQ-Q------TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAG-QKLIYAGKILSDDVPIRDY----RI 69 (85)
T ss_dssp --CCEEEEEEETTS-C------EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGG-EEEEETTEECCTTSBGGGG----CC
T ss_pred CCceEEEEEEECCC-C------EEEEEECCCCCHHHHHHHHHhhccccCCCHHH-eEEEECCEECcCCCCHHHc----CC
Confidence 455 6666654321 1 2335589999999999999998 4677654 3444566655667777663 23
Q ss_pred -CCCeEEEEecCc
Q 034290 84 -EDGFLYVTYSGE 95 (99)
Q Consensus 84 -~DGfLYl~Ys~~ 95 (99)
++..|++..+..
T Consensus 70 ~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 70 DEKNFVVVMVTKT 82 (85)
T ss_dssp CTTSEEEEEEC--
T ss_pred CCCCEEEEEEcCC
Confidence 345788776544
No 57
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=74.23 E-value=4.8 Score=24.93 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=35.7
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
...|.|.++.+++.++...+++.++++++--|+| ++.....+.|.+++
T Consensus 29 ~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~dl 76 (93)
T 2d07_B 29 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 76 (93)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred EEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE-CCEEcCCCCCHHHc
Confidence 4568899999999999999999999987655555 54433445555544
No 58
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=74.10 E-value=5.5 Score=24.74 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=41.5
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEec
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 93 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys 93 (99)
...+-|+.+.||+++...|..+.+++++. .-|+.+++....+.+|++. .- ++..|+|...
T Consensus 36 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~----gI~~g~~I~l~~~ 96 (101)
T 2klc_A 36 KEEFAVPENSSVQQFKEEISKRFKSHTDQ-LVLIFAGKILKDQDTLSQH----GIHDGLTVHLVIK 96 (101)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHTCCGGG-EEEEETTEEECTTCCTGGG----TCCTTCEEEEEEC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHc----CCCCCCEEEEEEc
Confidence 34456899999999999999999998765 3444566655566777653 22 3446776554
No 59
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=73.92 E-value=3.1 Score=26.06 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=39.7
Q ss_pred EecCCCchHHHHHHHHHhhccCccceEEEEEc---Cc-cCCCCchHHHHHhhhcC
Q 034290 33 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---NV-LPPTGAIMSTIYDEKKD 83 (99)
Q Consensus 33 lvp~~~tv~~f~~~irk~l~l~~~~slfl~Vn---n~-lp~~~~~m~~lY~~~kd 83 (99)
-||.+.+++++...|++||++++++...-|=. +. .+..+..|.+.+++=++
T Consensus 19 rvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n 73 (83)
T 1oey_A 19 KTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKN 73 (83)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBT
T ss_pred ECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhccC
Confidence 38999999999999999999987665444543 12 36788899999987663
No 60
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=73.79 E-value=4.6 Score=26.04 Aligned_cols=48 Identities=8% Similarity=0.144 Sum_probs=36.6
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
...|.|.++.++..++....++.++++++--|+| ++.....+.|.+++
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F-dG~rl~~~~Tp~dl 89 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIRIQADQTPEDL 89 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE-CCeEcCCCCCHHHc
Confidence 4568899999999999999999999988656666 44433445566554
No 61
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=73.36 E-value=9.5 Score=27.02 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=42.4
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCcc--ceEEEEEc-Cc---cCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAE--KAIFIFVD-NV---LPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~--~slfl~Vn-n~---lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
....+++..|+.++...+++.++++++ -.|+.+-+ ++ +-..+.+|.++. -.+|..+.|-..
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~---l~~~Q~illE~r 208 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAG---LYQGQVLVIEQK 208 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHT---CCTTCEEEEEEC
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhC---CCCCCEEEEEEe
Confidence 346789999999999999999999875 56666554 43 345567887753 334445555554
No 62
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=72.52 E-value=7.8 Score=23.76 Aligned_cols=43 Identities=7% Similarity=0.040 Sum_probs=32.4
Q ss_pred ecCCCchHHHHHHH-HHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 34 VPADLTVGQFVYVI-RKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 34 vp~~~tv~~f~~~i-rk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
++++.||+++...| ..+-++++++- =|+.+++....+.+|++.
T Consensus 20 v~~~~TV~~lK~~I~~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEEKASHISEI-KLLLKGKVLHDNLFLSDL 63 (87)
T ss_dssp CCTTCBHHHHHHHHHHTTSCSSSTTE-EEEETTEECCTTCBHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcCCChHHE-EEEECCEECcCcCCHHHc
Confidence 34899999999999 77778887653 344566766778888864
No 63
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=71.93 E-value=4.8 Score=25.67 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=39.8
Q ss_pred EEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEec
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 93 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys 93 (99)
.-|+.+.||+++...|..+.++++++ .-|+.++.....+.+|++. .- ++..|++...
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~y----gI~~gstI~l~~~ 81 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQDKEGIPPDQ-QRLIWAGKQLEDGRTLSDY----NIQRESTLHLVLR 81 (114)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTCBTTTT----TCCSSCEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHH-EEEEECCEECCCCCcHHHC----CCCCCCEEEEEEE
Confidence 45889999999999999999998765 3444566555566677653 22 3446777654
No 64
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=71.26 E-value=16 Score=22.92 Aligned_cols=85 Identities=6% Similarity=-0.072 Sum_probs=51.8
Q ss_pred cccCCCc-eEEEEEecCCCCCC--cccc-eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHh
Q 034290 4 ATMGIPF-FLFICMNSHKFYIP--TCLQ-CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYD 79 (99)
Q Consensus 4 ~~~~~p~-ipVIvE~~~~~~lp--~l~~-k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~ 79 (99)
+.+..|. |.|.|.......-| .|.. ...+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++.
T Consensus 18 ~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rL~~~Gk~L~D~~tL~~y-- 94 (115)
T 1we7_A 18 FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQ-KLQYEGIFIKDSNSLAYY-- 94 (115)
T ss_dssp HHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTE-EEEETTEEECTTSBHHHH--
T ss_pred HHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHE-EEEECCEECCCCCCHHHC--
Confidence 4455666 77777543211100 1331 233559999999999999999999987653 344466655667788764
Q ss_pred hhcC-CCCeEEEEec
Q 034290 80 EKKD-EDGFLYVTYS 93 (99)
Q Consensus 80 ~~kd-~DGfLYl~Ys 93 (99)
.- ++..|+|...
T Consensus 95 --~i~~g~~i~lv~r 107 (115)
T 1we7_A 95 --NMASGAVIHLALK 107 (115)
T ss_dssp --TCCSSCEEEEEEC
T ss_pred --CCCCCCEEEEEEE
Confidence 22 3346776653
No 65
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=71.05 E-value=19 Score=23.60 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=44.4
Q ss_pred ecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC------CCCeEEEEecCcccC
Q 034290 34 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD------EDGFLYVTYSGENTF 98 (99)
Q Consensus 34 vp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd------~DGfLYl~Ys~~~~f 98 (99)
|..+.||+++...|..+.++++.+- -|+.+++....+.+|++ |.-. + .+--|+|.......|
T Consensus 18 v~~sdTV~~lK~kI~~~egIP~~qQ-rLi~~Gk~LeD~~TLsd-y~I~-~~~a~~q~~stL~L~lr~~g~f 85 (118)
T 2fnj_B 18 AKESSTVFELKRIVEGILKRPPEEQ-RLYKDDQLLDDGKTLGE-CGFT-SQTARPQAPATVGLAFRADDTF 85 (118)
T ss_dssp EETTSBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBHHH-HTCC-TTTSBTTBCEEEEEEEBSSSCB
T ss_pred eCCcChHHHHHHHHHHHhCCCHHHe-EEEECCeECCCCCCHHH-cCcc-cccccCCCCCEEEEEecCCCce
Confidence 8999999999999999999987653 33457777778889987 3222 1 244678877644443
No 66
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=71.03 E-value=3.5 Score=25.82 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=33.7
Q ss_pred EEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++.
T Consensus 42 l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 42 VNVAPESTVLQFKEAINKANGIPVANQ-RLIYSGKILKDDQTVESY 86 (101)
T ss_dssp BCCCTTSBHHHHHHHHHHHHSCCSTTC-CEEETTEECCTTSBTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHCcChHHE-EEEECCEECCCcCcHHHC
Confidence 348899999999999999999987543 233466666667777764
No 67
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=70.92 E-value=4.5 Score=25.57 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=23.7
Q ss_pred EEecCCCchHHHHHHHHHhhccCccceEEEE
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIF 62 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~~slfl~ 62 (99)
-.||.+.+++++...|+.||+++ +.-+|.|
T Consensus 26 IrvP~di~~~~L~dKi~~RLk~~-~~~l~~y 55 (85)
T 1ip9_A 26 LMLKGDTTYKELRSKIAPRIDTD-NFKLQTK 55 (85)
T ss_dssp EEECSCCCHHHHHHHHHHHHTSS-CEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHhccc-ceEEEEe
Confidence 35999999999999999999994 3334444
No 68
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.60 E-value=7.9 Score=25.17 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=40.7
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCC-eEEEEec
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG-FLYVTYS 93 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DG-fLYl~Ys 93 (99)
..+-|+.+.||+++...|..+.++++++ .-|+.+++....+.+|++ |.-.|| .|+|...
T Consensus 44 ~~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~L~D~~tL~d----ygI~~gstI~lv~~ 103 (125)
T 1j8c_A 44 EEFAVPENSSVQQFKEAISKRFKSQTDQ-LVLIFAGKILKDQDTLIQ----HGIHDGLTVHLVIK 103 (125)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCSCSSS-EEEEETTEEESTTSCGGG----TTCSSSEEEEEEEC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCcce-EEEEECCEEcCCCCCHHH----cCCCCCCEEEEEec
Confidence 3456899999999999999999998765 344456665566677765 333333 6666543
No 69
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=70.38 E-value=3.3 Score=26.02 Aligned_cols=59 Identities=8% Similarity=-0.006 Sum_probs=41.6
Q ss_pred EEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEecC
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG 94 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys~ 94 (99)
+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|+++ .-+ ++..|++..+.
T Consensus 16 l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~--~i~-~g~~i~lv~~~ 74 (106)
T 3m62_B 16 LDLEPSNTILETKTKLAQSISCEESQI-KLIYSGKVLQDSKTVSEC--GLK-DGDQVVFMVSQ 74 (106)
T ss_dssp ECCCTTSBHHHHHHHHHHTTTSCGGGC-EEEETTEECCTTSBTTTT--TCC-TTCEEEEECCC
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhhE-EEEECCEECCCcCCHHHc--CCC-CCCEEEEEEcC
Confidence 458899999999999999999987653 344466666667787774 122 34477776543
No 70
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=69.98 E-value=7.6 Score=25.50 Aligned_cols=60 Identities=8% Similarity=0.093 Sum_probs=41.0
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEE-EEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl-~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
.+-|+.+.||+++...|..+.++++++--.+ |-++.....+.+|++. .- .++..|++...
T Consensus 16 ~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y--~i-~~~~~l~l~~~ 76 (159)
T 3rt3_B 16 QVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ--GL-GPGSTVLLVVD 76 (159)
T ss_dssp EEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGG--TC-CTTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHc--CC-CCCCEEEEEcc
Confidence 3458999999999999999999998654444 4255555777777753 11 13446666554
No 71
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=69.53 E-value=14 Score=22.90 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=41.3
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEecC
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYSG 94 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys~ 94 (99)
.+-|+.+.||+++...|..+.++++++-- |+.+++....+.+|++. .- ++..|+|....
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~y----gI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQR-WFFSGRPLTDKMKFEEL----KIPKDYVVQVIVSQ 96 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTCE-EEETTEECCTTSHHHHC----CCSSSCEEEEECCC
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccEE-EEECCEECCCCCcHHHc----CCCCCCEEEEEEeC
Confidence 35699999999999999999999876533 33466655667777653 22 34477776643
No 72
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=69.03 E-value=18 Score=22.48 Aligned_cols=53 Identities=6% Similarity=-0.001 Sum_probs=35.4
Q ss_pred CCchHHHHHHHHHhh--ccCccceEEEEEcCccCCCCchHHHHHhhhcCC-CCeEEEEec
Q 034290 37 DLTVGQFVYVIRKRI--KLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYS 93 (99)
Q Consensus 37 ~~tv~~f~~~irk~l--~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~-DGfLYl~Ys 93 (99)
+.||+++...|..+. ++++++..=|+.+++....+.+|++. .-. +-.|+|.-.
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y----~i~~g~~i~lv~~ 99 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFY----GIQPGSTVHVLRK 99 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHH----TCCTTCEEEEEES
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHc----CCCCCCEEEEEeC
Confidence 599999999999999 88876612334455545667788764 222 335666543
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=68.43 E-value=6.3 Score=25.28 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=39.2
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEec
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 93 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys 93 (99)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q-~L~~~g~~L~d~~tL~~~----~i~~~~~l~l~~~ 72 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 72 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHe-EEEECCeECcCcccHHHh----ccCCCCeeEEEee
Confidence 3458999999999999999999987653 344456544566666553 22 2335666543
No 74
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=68.41 E-value=11 Score=22.80 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=39.6
Q ss_pred EecCCCchHHHHHHHHHhhccCccceEEEE---EcCccCCCCchHHHHHhhhcCCCCeEEEEecCc
Q 034290 33 LVPADLTVGQFVYVIRKRIKLSAEKAIFIF---VDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGE 95 (99)
Q Consensus 33 lvp~~~tv~~f~~~irk~l~l~~~~slfl~---Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys~~ 95 (99)
-|+.+.||++|...|..+-++++++-- |+ .++.....+.+++++ . -+ ++..|+|--+.+
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~Qk-Li~~k~~Gk~L~D~~~L~~~-~-i~-~g~~l~l~~~~~ 84 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQK-LLGLKVKGKPAENDVKLGAL-K-LK-PNTKIMMMGTRE 84 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCE-EESCEETTEECCTTSBHHHH-T-CC-TTEEEEEECCCS
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeE-EEeeccCCcCcCCCCCHHHc-C-CC-CCCEEEEEecCc
Confidence 478999999999999999999875433 33 466655667788774 1 12 233666655443
No 75
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=68.11 E-value=5.7 Score=24.29 Aligned_cols=43 Identities=7% Similarity=-0.038 Sum_probs=31.0
Q ss_pred EecCCCchHHHHHHHHHhhccCcc-ceEEEEEcC-----ccCCCCchHH
Q 034290 33 LVPADLTVGQFVYVIRKRIKLSAE-KAIFIFVDN-----VLPPTGAIMS 75 (99)
Q Consensus 33 lvp~~~tv~~f~~~irk~l~l~~~-~slfl~Vnn-----~lp~~~~~m~ 75 (99)
-++.+.||+++...|..+-+++++ +.|.++-.+ .+...+.+|+
T Consensus 20 r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~ 68 (86)
T 4b6w_A 20 RYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLG 68 (86)
T ss_dssp EEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGG
T ss_pred EcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHH
Confidence 479999999999999999999875 555554222 2445555664
No 76
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=67.47 E-value=5.9 Score=24.27 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=26.3
Q ss_pred EecCCCchHHHHHHHHHhhccCc-cceEEEEE
Q 034290 33 LVPADLTVGQFVYVIRKRIKLSA-EKAIFIFV 63 (99)
Q Consensus 33 lvp~~~tv~~f~~~irk~l~l~~-~~slfl~V 63 (99)
-+|.++||+++...|.+..++++ .+.|+++-
T Consensus 28 ~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 28 QLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 48999999999999999999986 56677664
No 77
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=70.28 E-value=1.2 Score=25.79 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=31.8
Q ss_pred EEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
+-|+.+.||+++...|.++.++++++-- |+.++.....+.++++.
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qr-L~~~gk~L~d~~tL~~~ 59 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLR-VIFAGKELPNHLTVQNC 59 (76)
Confidence 4478899999999999999998876533 33455544556666553
No 78
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=66.28 E-value=13 Score=23.15 Aligned_cols=81 Identities=11% Similarity=-0.009 Sum_probs=48.7
Q ss_pred cccCCCc-eEEEEEecCCCCCCcccceeeEEecC-CCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhh
Q 034290 4 ATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPA-DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEK 81 (99)
Q Consensus 4 ~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~-~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~ 81 (99)
+.+..|. +.|.|.. +.. +.=+ ...+-|++ +.||+++...|....++++++- -|+.++.....+.+|++.
T Consensus 20 ~l~~~~~~i~i~Vk~-~~~--~~g~-~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Q-rL~~~Gk~L~D~~tL~~y---- 90 (111)
T 1we6_A 20 FLAQHPGPATIRVSK-PNE--NDGQ-FMEITVQSLSENVGSLKEKIAGEIQIPANKQ-KLSGKAGFLKDNMSLAHY---- 90 (111)
T ss_dssp HHHHCCSCEEEEECC-TTC--SSSC-CEEEEESCSSSBHHHHHHHHHHHTTCCTTTS-EEECSSSBCCTTSBTTTT----
T ss_pred HHHhCCCcEEEEEEe-ccc--CCCc-EEEEEecCCCCcHHHHHHHHHHHHCCCHHHe-EEEECCEECCCCCcHHHC----
Confidence 3445566 6666643 210 0001 33456887 9999999999999999987543 333466665666676543
Q ss_pred cC-CCCeEEEEec
Q 034290 82 KD-EDGFLYVTYS 93 (99)
Q Consensus 82 kd-~DGfLYl~Ys 93 (99)
.- ++..|+|...
T Consensus 91 ~I~~g~~l~l~~r 103 (111)
T 1we6_A 91 NVGAGEILTLSLR 103 (111)
T ss_dssp TCSSSCEEEEECS
T ss_pred CCCCCCEEEEEEE
Confidence 22 3346766543
No 79
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=65.85 E-value=7.5 Score=24.05 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=37.3
Q ss_pred EEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCC-chHHHHHhhhcCCCCeEEEEe
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSTIYDEKKDEDGFLYVTY 92 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~-~~m~~lY~~~kd~DGfLYl~Y 92 (99)
.-|+.+.||++|...|..+.++++++- =|+.+++....+ .+|++. .-+ ++..|+|.-
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~gk~L~D~~~tL~~y--gI~-~g~~l~l~~ 83 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEA-QIVYMEQLLTDDHCSLGSY--GLK-DGDMVVLLQ 83 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGB-CEEETTEEECCSSSBHHHH--TCC-TTEEEEECB
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHe-EEEECCEECCCCcccHHHC--CCC-CCCEEEEEE
Confidence 458999999999999999999987543 234465544444 577664 112 233566643
No 80
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=65.81 E-value=13 Score=23.78 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=41.6
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
...+-|+.+.||+++...|.++.++++++- -|+.++.....+.++++.= - .++..|++...
T Consensus 88 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q-rL~~~g~~L~d~~tL~~~~--i-~~~~~i~l~~r 148 (152)
T 3b08_A 88 TITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDYN--I-QKESTLHLVLR 148 (152)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTGGGT--C-CTTCEEEEEEC
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCcChhhE-EEEECCEECCCCCCHHHcC--C-CCCCEEEEEEe
Confidence 334568999999999999999999987654 3445665545666776541 1 23446777654
No 81
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=65.26 E-value=23 Score=22.37 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=45.7
Q ss_pred CcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC
Q 034290 24 PTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD 83 (99)
Q Consensus 24 p~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd 83 (99)
|.+- -+..-||.+..+..++.+--...++++..+--+--++.=..++++-|++|=+|.+
T Consensus 21 pklp-fkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGs 79 (92)
T 1j0g_A 21 PRLP-YKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGS 79 (92)
T ss_dssp TTCC-EEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCS
T ss_pred CCCC-ceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCc
Confidence 3444 6667899999999999999999999987763332223457888999999999964
No 82
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=64.68 E-value=16 Score=23.85 Aligned_cols=61 Identities=7% Similarity=0.020 Sum_probs=42.0
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
...+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++. .-.++..|++...
T Consensus 93 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~~G~~L~d~~tL~~y---~i~~g~~l~l~~r 153 (159)
T 3rt3_B 93 SSTYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEY---GLKPLSTVFMNLR 153 (159)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGG---TCCTTCEEEEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCHHHE-EEEECCeecCCCCCHHHc---CCCCCCEEEEEEe
Confidence 334569999999999999999999987653 444566655667777653 1123446776643
No 83
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=64.58 E-value=5.4 Score=25.12 Aligned_cols=62 Identities=18% Similarity=0.361 Sum_probs=40.1
Q ss_pred eeEEec-CCCchHHHHHHHHHhhccCcc-ceEEEEEcCc------------c---CCCCchHHHHHhhhcCCCCeEEEEe
Q 034290 30 CRYLVP-ADLTVGQFVYVIRKRIKLSAE-KAIFIFVDNV------------L---PPTGAIMSTIYDEKKDEDGFLYVTY 92 (99)
Q Consensus 30 ~Kflvp-~~~tv~~f~~~irk~l~l~~~-~slfl~Vnn~------------l---p~~~~~m~~lY~~~kd~DGfLYl~Y 92 (99)
...-|+ .+.||+++...|..+.++++. +.|++ ++. + ...+.+|+++= -+ .+-.|||.|
T Consensus 19 ~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~--~~~~~~~k~~~~~~~l~~~l~d~~tL~~~g--i~-~G~~L~l~~ 93 (107)
T 1wf9_A 19 ERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST--NRNLLLAKSPSDFLAFTDMADPNLRISSLN--LA-HGSMVYLAY 93 (107)
T ss_dssp EEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS--SGGGGTCCSHHHHTTCCSSCCTTCBGGGTC--CC-TTCEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE--CCccccccCccccccccccCCCCCCHHHCC--CC-CCCEEEEEe
Confidence 345588 899999999999999998764 44443 322 2 24455666432 11 233788888
Q ss_pred cCcc
Q 034290 93 SGEN 96 (99)
Q Consensus 93 s~~~ 96 (99)
..+.
T Consensus 94 ~~~~ 97 (107)
T 1wf9_A 94 EGER 97 (107)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7654
No 84
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=63.83 E-value=11 Score=22.79 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=39.7
Q ss_pred eEEecCCCchHHHHHHHHHh---hccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEecC
Q 034290 31 RYLVPADLTVGQFVYVIRKR---IKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYSG 94 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~---l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys~ 94 (99)
.+-|+.+.||+++...|..+ -++++++ .-|+.+++....+.+|++. .- ++..|++.-..
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~-qrLi~~Gk~L~D~~tL~~y----gI~~g~~i~l~~~~ 76 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAG-QKLIYAGKILNDDTALKEY----KIDEKNFVVVMVTK 76 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTT-EEEEETTEECCTTSBGGGG----TCCSSSEEEEEESS
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhh-EEEEECCEECCCcCcHHHC----CCCCCCEEEEEEeC
Confidence 34588999999999999998 4577654 3344566655666777653 33 34477776543
No 85
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=63.40 E-value=13 Score=23.00 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=36.2
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
...|.|.++.+++.++...+++.++++++--|+| ++.....+.|.+++
T Consensus 19 ~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~l~~~~Tp~dl 66 (94)
T 2io1_B 19 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 66 (94)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 4568899999999999999999999987655665 44433445566554
No 86
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=62.32 E-value=18 Score=22.51 Aligned_cols=62 Identities=8% Similarity=0.014 Sum_probs=39.1
Q ss_pred ceEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCcc-ceEEEEEcC-cc----CCCCchHHH
Q 034290 10 FFLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFVDN-VL----PPTGAIMST 76 (99)
Q Consensus 10 ~ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~-~slfl~Vnn-~l----p~~~~~m~~ 76 (99)
.|.|.|-.+.... . ....-|+++.||+++...|..+-+++++ +.|++.-.+ .. ...+.+|++
T Consensus 14 ~v~l~It~s~~~~----~-~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 14 SVHLHITHANLKS----F-SADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp CEEEEEEETTSSC----C-CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred eEEEEEEECCCCc----e-EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHH
Confidence 3777775522111 1 3334699999999999999999999875 455444322 22 244556654
No 87
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=60.13 E-value=16 Score=21.74 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=31.6
Q ss_pred eEEecCC-----CchHHHHHHHHHhhccCccceEEEEEcCc-cCCCCchHHHH
Q 034290 31 RYLVPAD-----LTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSTI 77 (99)
Q Consensus 31 Kflvp~~-----~tv~~f~~~irk~l~l~~~~slfl~Vnn~-lp~~~~~m~~l 77 (99)
.+-|+.+ .||++|...|..+.++++++- =|+.++. |...+.+|+++
T Consensus 20 ~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~q-rL~~~Gk~L~D~~~~L~~~ 71 (92)
T 1wxv_A 20 DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQ-KLIFKGKSLKEMETPLSAL 71 (92)
T ss_dssp EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTC-EEEETTEEECCSSSBHHHH
T ss_pred EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHE-EEEECCeecCCCcccHHHC
Confidence 3447774 999999999999999986543 2334555 43335578764
No 88
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=59.21 E-value=7.7 Score=22.47 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=18.2
Q ss_pred HHHHHhhccCccceEEEEEcC
Q 034290 45 YVIRKRIKLSAEKAIFIFVDN 65 (99)
Q Consensus 45 ~~irk~l~l~~~~slfl~Vnn 65 (99)
.-+|++|++.+++.|.+.+.+
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 457999999999999998864
No 89
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=59.18 E-value=17 Score=24.22 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=40.7
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- .++..|++...
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~gip~~~Q-rL~~~g~~L~d~~tL~~~-~i--~~~~~l~l~~~ 92 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY-NI--QKESTLHLVLR 92 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTGGG-TC--CTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCccccccCCHhHc-CC--cccceeeeeec
Confidence 3559999999999999999999987653 344566666677777763 11 12335666543
No 90
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=58.98 E-value=26 Score=21.63 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=33.4
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCcc-ceEEEEEcCc----cCCCCchHHH
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFVDNV----LPPTGAIMST 76 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~-~slfl~Vnn~----lp~~~~~m~~ 76 (99)
...-|+.+.||+++...|..+.+++++ +.|++.-++. +...+.+|++
T Consensus 30 ~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 30 FEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred EEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 335699999999999999999999875 4555443232 3355667765
No 91
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=57.71 E-value=12 Score=24.50 Aligned_cols=48 Identities=8% Similarity=0.101 Sum_probs=35.9
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
...|.|.++.++..++....++.+++..+--|+|=+..+ ..+.|..+|
T Consensus 52 ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI-~~~~TP~dL 99 (115)
T 3kyd_D 52 EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKEL 99 (115)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeEC-CCCCCHHHc
Confidence 446889999999999999999999998776677744343 334555444
No 92
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=57.35 E-value=34 Score=21.67 Aligned_cols=47 Identities=11% Similarity=0.021 Sum_probs=36.8
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 76 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~ 76 (99)
+...-|+.+.||+++...|..+.++++.+- -|..+++....+.+|++
T Consensus 31 ~~~lev~~~~TV~~lK~kI~~k~gip~~qQ-rLI~~GKiL~D~~TL~~ 77 (100)
T 1wju_A 31 KNLLETRLHITGRELRSKIAETFGLQENYI-KIVINKKQLQLGKTLEE 77 (100)
T ss_dssp SEEEEEESSSBHHHHHHHHHHHTTCCSTTC-EEEETTEECCTTSBHHH
T ss_pred EEEEEeCCcCHHHHHHHHHHHHHCcCHHHe-EEEeCCeECCCCCcHHH
Confidence 334558999999999999999999987653 44456776678888876
No 93
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=57.05 E-value=5.6 Score=25.64 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=23.3
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCcc
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAE 56 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~ 56 (99)
...+||.+.++.+|...|++|+++..+
T Consensus 25 ~~i~V~~~i~f~~L~~kI~~Kl~~~~~ 51 (98)
T 1q1o_A 25 FTLLVEKVWNFDDLIMAINSKISNTHN 51 (98)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHCS
T ss_pred EEEEecCCCCHHHHHHHHHHHHcCCcc
Confidence 456799999999999999999998633
No 94
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=55.99 E-value=12 Score=23.43 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=32.6
Q ss_pred EEecCCCchHHHHHHHHHhh--ccC-ccceEEEEEcCccCCCCchHHHHHh
Q 034290 32 YLVPADLTVGQFVYVIRKRI--KLS-AEKAIFIFVDNVLPPTGAIMSTIYD 79 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l--~l~-~~~slfl~Vnn~lp~~~~~m~~lY~ 79 (99)
+-|+.+.||+++...|..++ ..+ ..+. |..+++....+.+|++...
T Consensus 40 l~v~~~~TV~~LK~~I~~~~~g~pp~~~Qr--LIy~Gk~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 40 ISCFLNWTVGKLKTHLSNVYPSKPLTKDQR--LVYSGRLLPDHLQLKDILR 88 (99)
T ss_dssp EEECTTSBHHHHHHHHHHHSTTCCCTTTCC--EEETTEEECTTSBTHHHHT
T ss_pred EEcCCCCHHHHHHHHHHHHhcCCCChhhEE--EEECCEECCCCCCHHHHhc
Confidence 44699999999999999876 333 3343 3446666667888887643
No 95
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.76 E-value=17 Score=22.96 Aligned_cols=45 Identities=9% Similarity=0.237 Sum_probs=32.3
Q ss_pred EEecCCCchHHHHHHHHHhhccCccceEEEEEc-CccCCCCchHHHH
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTI 77 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~~slfl~Vn-n~lp~~~~~m~~l 77 (99)
.-|+.+.||++|...|..+-++++++--.++.. +. ...+.+++++
T Consensus 23 v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~ 68 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSL 68 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHH
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHc
Confidence 348899999999999999999987643334322 34 4556677765
No 96
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=55.63 E-value=25 Score=23.84 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=41.2
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- .++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~y--~I-~~gstI~Lvlr 72 (169)
T 3l0w_B 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NI-QKESTLHLVLR 72 (169)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCTTTE-EEEETTEECCTTSBGGGG--TC-CTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCHHHE-EEEECCccccCcCcHHHc--CC-CCCCEEEEEEE
Confidence 3558999999999999999999988654 444566655667787764 11 23336666543
No 97
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=54.70 E-value=11 Score=20.93 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=18.2
Q ss_pred HHHHHhhccCccceEEEEEcC
Q 034290 45 YVIRKRIKLSAEKAIFIFVDN 65 (99)
Q Consensus 45 ~~irk~l~l~~~~slfl~Vnn 65 (99)
.-+|++|++.+++.+.+.+.+
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 458999999999999998864
No 98
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=53.50 E-value=9.1 Score=22.88 Aligned_cols=39 Identities=8% Similarity=0.186 Sum_probs=19.3
Q ss_pred HHHHHhhccCccceEEEEEcC-c--c-CCCC---chHHHHHhhhcC
Q 034290 45 YVIRKRIKLSAEKAIFIFVDN-V--L-PPTG---AIMSTIYDEKKD 83 (99)
Q Consensus 45 ~~irk~l~l~~~~slfl~Vnn-~--l-p~~~---~~m~~lY~~~kd 83 (99)
.-+|++|+|.+++.+.+.+.+ . + |... .++.++...+.+
T Consensus 19 k~~~~~lgl~~gd~v~i~~~~~~iii~p~~~~~~~~l~~ll~~~~~ 64 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITP 64 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEETTEEEEEEC-----------------
T ss_pred HHHHHHcCCCCCCEEEEEEECCEEEEEECCCCCcCCHHHHHhhccc
Confidence 347899999999999998864 3 2 4433 478888888854
No 99
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.44 E-value=9.4 Score=23.36 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=31.5
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
.+-|+.+.||++|...|..+.++++++-- |+.+++.. .+.+|++.
T Consensus 30 ~i~v~~~~TV~~LK~~I~~~tgip~~~Qr-L~~~Gk~L-dd~tL~~~ 74 (95)
T 1v86_A 30 DVKVPLDSTGSELKQKIHSITGLPPAMQK-VMYKGLVP-EDKTLREI 74 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCSCSTTCC-CBSSSBCC-SSSBHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeE-EEECCeeC-CcCcHHHC
Confidence 34589999999999999999999865322 22355433 45566653
No 100
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=53.04 E-value=9.5 Score=23.33 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEecCCCchHHHHHHHHHhhccC
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLS 54 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~ 54 (99)
..||.+.++.+|...|++|+++.
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHccc
Confidence 46999999999999999999874
No 101
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=52.85 E-value=25 Score=23.46 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=32.5
Q ss_pred CCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEc
Q 034290 23 IPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD 64 (99)
Q Consensus 23 lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vn 64 (99)
+|+.. -+...|....+|++++..|.+++++...+- |-+|.
T Consensus 18 llDg~-~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 18 MLDGT-VKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp CTTSC-EEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred cCCCC-EEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 56666 777889999999999999999999986544 55554
No 102
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=50.86 E-value=3.2 Score=26.91 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred EEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++.
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~ 59 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY 59 (128)
T ss_dssp ----------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHE-EEEECCEECCCCCchhhh
Confidence 348889999999999999989887643 333455544556666653
No 103
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=50.34 E-value=17 Score=22.67 Aligned_cols=55 Identities=9% Similarity=0.055 Sum_probs=37.7
Q ss_pred ecCCCchHHHHHHH-HHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC--CCCeEEEEec
Q 034290 34 VPADLTVGQFVYVI-RKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD--EDGFLYVTYS 93 (99)
Q Consensus 34 vp~~~tv~~f~~~i-rk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd--~DGfLYl~Ys 93 (99)
|+.+.||+++...| ..+-++++++- =|..+++....+.+|++. .- ++.+|.+--+
T Consensus 38 v~~~~TV~~lK~~I~~~~~gip~~~Q-rLi~~Gk~L~D~~tL~dy----~I~~~g~ti~lmvs 95 (98)
T 4a20_A 38 FSPSDTILQIKQHLISEEKASHISEI-KLLLKGKVLHDNLFLSDL----KVTPANSTITVMIK 95 (98)
T ss_dssp ECTTCBHHHHHHHHHHTTSCSCGGGE-EEEETTEEECTTCBGGGS----CCBTTBCEEEEEEC
T ss_pred cCCCChHHHHHHHHHHHhcCCChhhE-EEEECCEECcCcCCHHHc----CcCCCCCEEEEEEe
Confidence 56999999999999 77768877653 344566666677788763 32 3447766543
No 104
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=49.04 E-value=21 Score=25.10 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=39.7
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY 92 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Y 92 (99)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++.= - .++..|+|.-
T Consensus 119 ~l~V~~s~TV~~LK~kI~~~~gIp~~~Q-rLi~~Gk~L~D~~tL~dyg--I-~~gstI~Lvl 176 (189)
T 3q3f_A 119 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDYN--I-QKESTLHLVL 176 (189)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-CEEETTEECCTTCBGGGGT--C-CTTCEEEECC
T ss_pred EEEeCCCCcHHHHHHHHHhccCCCHHHE-EEEECCEECCCCCCHHHCC--C-CCCCEEEEEE
Confidence 4559999999999999999999987543 2335666666677877641 1 1233566543
No 105
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=47.45 E-value=13 Score=23.67 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=39.7
Q ss_pred EecCCCchHHHHHHHHHhhccCcc--------------ceEEEEEcCc-cCCCCchHHHHHhhhcCCCCeEEEEecCc
Q 034290 33 LVPADLTVGQFVYVIRKRIKLSAE--------------KAIFIFVDNV-LPPTGAIMSTIYDEKKDEDGFLYVTYSGE 95 (99)
Q Consensus 33 lvp~~~tv~~f~~~irk~l~l~~~--------------~slfl~Vnn~-lp~~~~~m~~lY~~~kd~DGfLYl~Ys~~ 95 (99)
-|+++.||+++...|..+.++++. ...-|..++. |-..+.+|++. .= + ++.+|++.-...
T Consensus 23 ~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dy-gI-~-~g~~l~lv~~lr 97 (105)
T 1v2y_A 23 VVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY-GI-R-NRDEVSFIKKLG 97 (105)
T ss_dssp EECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH-TC-C-SSEEEEEEECSC
T ss_pred EECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHc-CC-C-CCCEEEEEehhc
Confidence 388999999999999999988653 2345555665 44456788862 21 1 344677665443
No 106
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.35 E-value=28 Score=21.95 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=36.4
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
...|.|.++.++..++....++.++++++--|+|=+..+ ..+.|..++
T Consensus 36 ~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l-~~~~Tp~dl 83 (104)
T 1wz0_A 36 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 83 (104)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC-CTTSCTTTT
T ss_pred EEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 456889999999999999999999998865566644444 445555554
No 107
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.01 E-value=58 Score=21.43 Aligned_cols=47 Identities=4% Similarity=-0.087 Sum_probs=35.7
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 76 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~ 76 (99)
+.-.-++.+.||++|...+-...+++++.-- |.-+++....+.||.+
T Consensus 28 k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qr-LIy~GKiLKD~eTL~~ 74 (118)
T 2daf_A 28 EIVIPFKVDTILKYLKDHFSHLLGIPHSVLQ-IRYSGKILKNNETLVQ 74 (118)
T ss_dssp EEEEEECSSSCSHHHHHHHHHHHTCCTTTEE-EEETTEEECSSCCHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHhhhCCChHHEE-EEECCeEcCCcchHHH
Confidence 3344589999999999999999999877644 4445655577888875
No 108
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=46.53 E-value=59 Score=22.28 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=25.7
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccc
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEK 57 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~ 57 (99)
...+.||.+.|+.+|-.+|+.-++.....
T Consensus 23 WRri~Vp~~~TL~~LH~vIq~afgw~~~H 51 (188)
T 2i1s_A 23 WRRIQVPENYTFLDLHKAIQAVMDWEDYH 51 (188)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCCCCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCE
Confidence 56789999999999999999999987543
No 109
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=45.23 E-value=19 Score=21.36 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=27.7
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCc
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGA 72 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~ 72 (99)
..=+|...|+++++ ++|++++++. -+.+|+...+.|.
T Consensus 14 ~~ev~~g~Tv~dLL----~~Lgl~~~~V-vV~vNG~~v~~d~ 50 (74)
T 2l32_A 14 EVAVDDDGTYADLV----RAVDLSPHEV-TVLVDGRPVPEDQ 50 (74)
T ss_dssp EEECSTTCSHHHHH----HTTCCCSSCC-CEECCCCCCCTTS
T ss_pred eEEcCCCCcHHHHH----HHcCCCcceE-EEEECCEECCHHH
Confidence 35688999999854 6889999887 4888987555544
No 110
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=45.01 E-value=4.5 Score=27.50 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred EEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++.
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~dy 59 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY 59 (152)
T ss_dssp ----------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHE-EEEECCEEccccCcHHHc
Confidence 348889999999999999999987653 344455555667777764
No 111
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=42.42 E-value=34 Score=24.35 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=32.0
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCc
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV 66 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~ 66 (99)
...|.|.++.++..++....+|.+++..+--|+|=+..
T Consensus 40 ~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~r 77 (200)
T 3pge_A 40 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR 77 (200)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEE
T ss_pred EEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEE
Confidence 56789999999999999999999999877667774433
No 112
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=42.33 E-value=30 Score=22.73 Aligned_cols=65 Identities=12% Similarity=0.191 Sum_probs=45.3
Q ss_pred eeEE-ecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCC-------CCeEEEEecCcccC
Q 034290 30 CRYL-VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-------DGFLYVTYSGENTF 98 (99)
Q Consensus 30 ~Kfl-vp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~-------DGfLYl~Ys~~~~f 98 (99)
.-|+ |..+.||.++...|..+.++++.+---+ -++++...+.||++. . . .+ +--|+|.+...+.|
T Consensus 13 TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI-~~Gk~LeD~kTL~dy-~-I-~~~ta~~q~~atl~Lvlr~~~~f 85 (118)
T 4ajy_B 13 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGEC-G-F-TSQTARPQAPATVGLAFRADDTF 85 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTTTT-T-C-CGGGSBTTBCEEEEEEECCSSCC
T ss_pred EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE-eCCeECCCcCCHHHc-C-C-CcCcccCCCCCEEEEEEecCCCc
Confidence 3354 8899999999999999999998654333 466666777777752 1 1 12 44788887766555
No 113
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=42.15 E-value=23 Score=25.74 Aligned_cols=48 Identities=8% Similarity=0.152 Sum_probs=36.7
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
...|.|.++.++..++....++.+++..+--|+| ++.-...+.|..+|
T Consensus 68 eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF-DGqRI~~ddTPeDL 115 (207)
T 3tix_A 68 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY-DGIEIQADQTPEDL 115 (207)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE-TTEECCSSCCTTTT
T ss_pred EEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE-CCeecCCCCCHHHc
Confidence 6678999999999999999999999987766777 44333334554443
No 114
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.26 E-value=30 Score=20.27 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=19.0
Q ss_pred EEEcCccCCCCchHHHHHhhhc--------CCCCeEEEEecCc
Q 034290 61 IFVDNVLPPTGAIMSTIYDEKK--------DEDGFLYVTYSGE 95 (99)
Q Consensus 61 l~Vnn~lp~~~~~m~~lY~~~k--------d~DGfLYl~Ys~~ 95 (99)
|||.| +-.....|.+++.+|. ..-||-+|.|.+.
T Consensus 18 l~V~n-~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~ 59 (97)
T 1x5p_A 18 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 59 (97)
T ss_dssp EEEEC-SSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSH
T ss_pred EEEcC-CCCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCH
Confidence 44555 4344445666666653 2356777777654
No 115
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.38 E-value=22 Score=23.05 Aligned_cols=42 Identities=17% Similarity=0.334 Sum_probs=28.2
Q ss_pred CccceEEEEEcCc-cCCCCchHHHHHhhhcCC--------CCe-EEEEecCc
Q 034290 54 SAEKAIFIFVDNV-LPPTGAIMSTIYDEKKDE--------DGF-LYVTYSGE 95 (99)
Q Consensus 54 ~~~~slfl~Vnn~-lp~~~~~m~~lY~~~kd~--------DGf-LYl~Ys~~ 95 (99)
+++..|+|||.|- -+-....|.+++.+|..- .|| =+|.|.+.
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~ 72 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESV 72 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSH
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCH
Confidence 4678899999983 345566788888887531 264 66666543
No 116
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=39.57 E-value=42 Score=19.27 Aligned_cols=37 Identities=5% Similarity=0.012 Sum_probs=24.9
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCc
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGA 72 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~ 72 (99)
.+-++...|+++++.. |++++. .+-+.||+...+.+.
T Consensus 17 ~~~~~~~~tv~~Ll~~----l~~~~~-~v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGE----LEIPIE-TVVVKKNGQIVIDEE 53 (70)
T ss_dssp EEEESSCCBHHHHHHH----TTCCTT-TEEEEETTEECCTTS
T ss_pred eEECCCCCcHHHHHHH----hCCCCC-CEEEEECCEECCCcc
Confidence 3567888899997654 466654 456889987544443
No 117
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=38.35 E-value=29 Score=24.68 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=39.2
Q ss_pred EEecCCCchHHHHHHHHHhhccCcc--ceEEEEEcC-c---cCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAE--KAIFIFVDN-V---LPPTGAIMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~--~slfl~Vnn-~---lp~~~~~m~~lY~~~kd~DGfLYl~Ys 93 (99)
..+++..|+.++...+++.++++++ -.|+.+-++ + +-..+.+|.++. -.+|..|.|-..
T Consensus 156 ~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~---L~~~Q~illE~r 220 (231)
T 3jyu_A 156 CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAG---LYQGQVLVIEPQ 220 (231)
T ss_dssp EEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTT---CCTTEEEEEEEC
T ss_pred EEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhC---CCCCCEEEEEEe
Confidence 5679999999999999999999875 455555543 2 344566776542 223445555443
No 118
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=38.19 E-value=16 Score=21.88 Aligned_cols=46 Identities=9% Similarity=0.160 Sum_probs=29.8
Q ss_pred EEecCCCchHHHHHHHHHhhccCc-cceEEEEEcC-c-c-CCCCchHHHH
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSA-EKAIFIFVDN-V-L-PPTGAIMSTI 77 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~-~~slfl~Vnn-~-l-p~~~~~m~~l 77 (99)
.-|+++.|++++...|.+.++++. .+++++--+. . + -+.+.+++++
T Consensus 18 i~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~l 67 (80)
T 2pjh_A 18 ITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLL 67 (80)
T ss_dssp CCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTT
T ss_pred EEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHc
Confidence 347888999999999999999873 4455543222 1 2 1245555554
No 119
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=38.09 E-value=48 Score=22.66 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=28.7
Q ss_pred CccceEEEEEcCc-cCCCCchHHHHHhhhcC----------CCCeEEEEecCc
Q 034290 54 SAEKAIFIFVDNV-LPPTGAIMSTIYDEKKD----------EDGFLYVTYSGE 95 (99)
Q Consensus 54 ~~~~slfl~Vnn~-lp~~~~~m~~lY~~~kd----------~DGfLYl~Ys~~ 95 (99)
+++..+.|||.|- -+-....|.+++.+|.. ..||=+|.|.+.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~ 94 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 94 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCH
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCH
Confidence 4567788999984 44566688889888843 235666666553
No 120
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=37.62 E-value=29 Score=27.83 Aligned_cols=60 Identities=13% Similarity=0.273 Sum_probs=43.5
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEc---Cc--cCC-CCchHHHHHhhhcCCCCeEEEE
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---NV--LPP-TGAIMSTIYDEKKDEDGFLYVT 91 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vn---n~--lp~-~~~~m~~lY~~~kd~DGfLYl~ 91 (99)
...|+++.+++++...||++++++++..|=||=. +. ... ++.++.+.+++-.|-| .|+..
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~Gd-II~fQ 215 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGD-IIVFQ 215 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTE-EEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCC-EEEEE
Confidence 3679999999999999999999999988877743 21 123 6778887775554323 55544
No 121
>3tuo_A DNA-binding protein SATB1; 1.70A {Homo sapiens}
Probab=37.56 E-value=35 Score=22.24 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=36.4
Q ss_pred EecCCCchHHHHHHHHHhhccCcc----ceEEEEEcC-c-c------CCCCchHHHHHhh
Q 034290 33 LVPADLTVGQFVYVIRKRIKLSAE----KAIFIFVDN-V-L------PPTGAIMSTIYDE 80 (99)
Q Consensus 33 lvp~~~tv~~f~~~irk~l~l~~~----~slfl~Vnn-~-l------p~~~~~m~~lY~~ 80 (99)
+||++..+.|++...=.+|+.+.+ ..=-+-|+| + + ..++.|+|++-.+
T Consensus 34 iI~~~t~f~qLV~taL~~LGYs~~~a~~A~G~I~v~nWkPLp~~~itd~p~~TV~d~L~e 93 (105)
T 3tuo_A 34 LVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKWNPVPLSYVTDAPDATVADMLQD 93 (105)
T ss_dssp EEETTSBGGGHHHHHHHHTTCCHHHHHHCEEEEEETTSCCBCGGGTCCCTTCBHHHHHTT
T ss_pred EEeccchHHHHHHHHHHHcCCCchhhhhccceEEEccccCcCHHHcCCCchhhHHHHHHH
Confidence 699999999999999999997743 222466777 3 3 3688899887654
No 122
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=37.08 E-value=49 Score=21.85 Aligned_cols=46 Identities=11% Similarity=0.103 Sum_probs=34.4
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST 76 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~ 76 (99)
..+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++
T Consensus 109 ~~l~v~~~~tV~~lK~~I~~~~gip~~~q~-L~~~g~~L~D~~tL~~ 154 (172)
T 3u30_A 109 ITLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSD 154 (172)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCC-EEETTEECCTTSBSGG
T ss_pred eeEEecCCCCHHHHHHHHHHHhCCCceeEE-EEECCccCCCCCcHHH
Confidence 345589999999999999999999876433 3346665566777776
No 123
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=36.63 E-value=59 Score=20.43 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=32.9
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCc
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV 66 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~ 66 (99)
--++-|.++.|++.|...|.++-++++.+-..||-+..
T Consensus 25 ~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~ 62 (94)
T 4efo_A 25 AHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRR 62 (94)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEE
T ss_pred EEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCc
Confidence 45688999999999999999999999988888887743
No 124
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=36.14 E-value=32 Score=20.31 Aligned_cols=57 Identities=9% Similarity=0.061 Sum_probs=35.1
Q ss_pred ecCCCchHHHHHHHHHhhccCcc-ceEEEEEc-Cc-cC-C-CCchHHHHHhhhcCCCCeEEEEecC
Q 034290 34 VPADLTVGQFVYVIRKRIKLSAE-KAIFIFVD-NV-LP-P-TGAIMSTIYDEKKDEDGFLYVTYSG 94 (99)
Q Consensus 34 vp~~~tv~~f~~~irk~l~l~~~-~slfl~Vn-n~-lp-~-~~~~m~~lY~~~kd~DGfLYl~Ys~ 94 (99)
++.+.||+++...|..+.+++++ +.| +|-. .+ +. . .+.+++++= -+ ....|++....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL-~~~~p~k~l~l~~~~~tL~~~g--l~-~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRI-LVGYPPECLDLSDRDITLGDLP--IQ-SGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCC-EESSCCCCCCCCCSSCBTTTSS--CC-TTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEE-EeCCCCcccccCCCCCCHHHcC--CC-CCCEEEEEeCC
Confidence 77899999999999999998754 333 3321 12 32 2 456666541 11 23367776553
No 125
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=35.03 E-value=33 Score=25.93 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=37.6
Q ss_pred EEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEE
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVT 91 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~ 91 (99)
.-|+.+.||+++...|..+.++++++- =|+.+++....+.+|++. .- ++..|+|.
T Consensus 248 leV~~s~TV~dLK~kI~~~~GIp~~~Q-RLi~~Gk~L~D~~TLsdy----gI~~gstL~Lv 303 (307)
T 3ai5_A 248 LEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLV 303 (307)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTGGG----TCCTTCEEEEE
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHE-EEEeCCeecCCCCCHHHc----CCCCCCEEEEE
Confidence 458999999999999999999987643 334466555666677654 22 23356654
No 126
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.75 E-value=74 Score=19.01 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=32.9
Q ss_pred ceEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCcc-ceEEEE
Q 034290 10 FFLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIF 62 (99)
Q Consensus 10 ~ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~-~slfl~ 62 (99)
+|.|.|-..... . ....-|+.+.||+++...|..+-+++++ +.|++.
T Consensus 7 ~v~l~I~~~~~~-----~-~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 7 GVMVFISSSLNS-----F-RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEEEETTSS-----S-CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred EEEEEEEECCCC-----e-eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 367777543222 1 3334699999999999999999999864 555544
No 127
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=32.74 E-value=41 Score=20.43 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=27.7
Q ss_pred eEEecCCCchHHHHHHHHHhhc-cCc---------cceEEEEEcCccCCCCc
Q 034290 31 RYLVPADLTVGQFVYVIRKRIK-LSA---------EKAIFIFVDNVLPPTGA 72 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~-l~~---------~~slfl~Vnn~lp~~~~ 72 (99)
..-++...|+++++..|..+.. +.. ...+-++||+...+.+.
T Consensus 30 ~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~ 81 (98)
T 1vjk_A 30 EIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDE 81 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTC
T ss_pred EEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCC
Confidence 3446788999999999877631 211 24567899986544443
No 128
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=32.14 E-value=59 Score=26.01 Aligned_cols=63 Identities=10% Similarity=0.203 Sum_probs=43.9
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCc-cceEEEEEcC---c----cCCCCc----hHHHHHhhhcCCCCeEEEEec
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSA-EKAIFIFVDN---V----LPPTGA----IMSTIYDEKKDEDGFLYVTYS 93 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~-~~slfl~Vnn---~----lp~~~~----~m~~lY~~~kd~DGfLYl~Ys 93 (99)
-..|-|++++|+++|...+-+.+++++ ...|++.++. + ++.++. ++.+++.. ..+=-||+..+
T Consensus 37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~--~~~~~lflE~~ 111 (530)
T 2ylm_A 37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDN--ENPWTIFLETV 111 (530)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTS--CSSEEEEEEEC
T ss_pred cceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhcc--CCceEEEEEec
Confidence 346899999999999999999999985 5788998863 2 222222 45555542 33456777654
No 129
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=31.90 E-value=32 Score=22.56 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=22.8
Q ss_pred hccCccceEEEEEcCc-cCCCCchHHHHHhhhcC
Q 034290 51 IKLSAEKAIFIFVDNV-LPPTGAIMSTIYDEKKD 83 (99)
Q Consensus 51 l~l~~~~slfl~Vnn~-lp~~~~~m~~lY~~~kd 83 (99)
+.=.++.-|.|||.|- -+-....|.+++.+|..
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~ 54 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 54 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSC
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCC
Confidence 3345678899999994 56677788888888843
No 130
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=31.87 E-value=41 Score=21.03 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=23.4
Q ss_pred EEEEcCccCCCCchHHHHHhhhcC--------CCCeEEEEecCcc
Q 034290 60 FIFVDNVLPPTGAIMSTIYDEKKD--------EDGFLYVTYSGEN 96 (99)
Q Consensus 60 fl~Vnn~lp~~~~~m~~lY~~~kd--------~DGfLYl~Ys~~~ 96 (99)
-|||.| +.-....|.+++..|.. .-||-+|.|.+.+
T Consensus 41 ~lfVgn-l~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~ 84 (121)
T 2bz2_A 41 TLYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKME 84 (121)
T ss_dssp EEEEEC-SSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHH
T ss_pred EEEEcC-CCCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHH
Confidence 355666 55556677777777743 2478888887643
No 131
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=31.76 E-value=72 Score=23.43 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=37.8
Q ss_pred eeeE-EecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCC-CCeEEEEecCc
Q 034290 29 CCRY-LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYSGE 95 (99)
Q Consensus 29 k~Kf-lvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~-DGfLYl~Ys~~ 95 (99)
.+-| .=..+++..+|...+|+.-+-.|+.| .|++. .+.++|++..++ |..|+++.|+.
T Consensus 36 ~~~y~~D~~di~~~efy~~~~~~~~~~p~TS--------qps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 95 (297)
T 3nyi_A 36 GETYYRDGVDITRDECYQRMVDDPKLFPKTS--------LPSVE-SYADVFRSFVEQGFPVVCFTITTL 95 (297)
T ss_dssp SSCEEEBTTTBCHHHHHHHHHHCTTCCCEEE--------CCCHH-HHHHHHHHHHTTTCCEEEEESCTT
T ss_pred CEEEecCCCCCCHHHHHHHHHhCCCCCceec--------CCCHH-HHHHHHHHHHHCCCeEEEEECCCc
Confidence 4445 43457889999999976411223332 45543 678888887653 78999998874
No 132
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=31.06 E-value=62 Score=23.56 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=31.1
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEecCc
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGE 95 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys~~ 95 (99)
+-|.=..+++..+|...+++.-.+ |+.| .|+ +++..+.|++-|..|+++.|+.
T Consensus 34 ~~y~D~~di~~~efy~~~~~~~~~-p~TS--------qps----~~~~~~~f~~~~~ii~i~iSs~ 86 (278)
T 3fdj_A 34 EEFCDDGQLDIHRMLDILEKHKGR-SYTA--------CPG----IDAWLEAFGDDDEIFVVTITAG 86 (278)
T ss_dssp CEEECSTTCCHHHHHHHHHTCCSC-CEEE--------CCC----HHHHHHHHTTCSEEEEEESCTT
T ss_pred EEEecCCCCCHHHHHHHHHhCCCC-ceec--------CCC----HHHHHHHHhcCCcEEEEECCCc
Confidence 334444578889999888754112 1221 344 3344444445577999998874
No 133
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=31.04 E-value=57 Score=28.51 Aligned_cols=49 Identities=10% Similarity=0.270 Sum_probs=34.7
Q ss_pred eEEecCCCchHHHHHHHHHhhccCcc-----ceEEEEEcCccC------CCCchHHHHHhhh
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAE-----KAIFIFVDNVLP------PTGAIMSTIYDEK 81 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~-----~slfl~Vnn~lp------~~~~~m~~lY~~~ 81 (99)
+|-|+.++|+.+|+..+++++++... .+ -||.. ..| ..+.+|.+|++.-
T Consensus 921 ~~~v~~~~Tl~~li~~~~~~~~~~~~~i~~~~~-~ly~~-~~~~~~~~~~l~~~l~~l~~~~ 980 (1015)
T 3cmm_A 921 RFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVS-LLYAS-FFPPKKLKERLNLPITQLVKLV 980 (1015)
T ss_dssp EEEEESCCBHHHHHHHHHHTTCCEEEEEEETTE-EEEET-TCCHHHHHHHTTSBHHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHhCCcceeeccCCc-EEEec-CCCchhhHHhccCCHHHHHHhh
Confidence 56788899999999999999887533 11 12322 233 3677899999875
No 134
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=30.70 E-value=77 Score=19.27 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=22.1
Q ss_pred EEEcCcc-CCCCchHHHHHhhhcC-------CCCeEEEEecCcc
Q 034290 61 IFVDNVL-PPTGAIMSTIYDEKKD-------EDGFLYVTYSGEN 96 (99)
Q Consensus 61 l~Vnn~l-p~~~~~m~~lY~~~kd-------~DGfLYl~Ys~~~ 96 (99)
|||.|-- -.....|.+++..|.. .|||-+|.|.+.+
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~ 62 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE 62 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHH
Confidence 5565532 2355577777777743 2388888887653
No 135
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=30.03 E-value=1.1e+02 Score=19.35 Aligned_cols=47 Identities=9% Similarity=0.090 Sum_probs=32.3
Q ss_pred eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCcc-ceEEEEE
Q 034290 11 FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFV 63 (99)
Q Consensus 11 ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~-~slfl~V 63 (99)
|.|.|-..... . ..-.-|+.+.||+++...|..+-+++++ +.|++.-
T Consensus 7 v~l~V~~~~~~-----~-~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g 54 (122)
T 1t0y_A 7 YDLEITTNATD-----F-PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFD 54 (122)
T ss_dssp EEEEEEESSCC-----S-CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEEC
T ss_pred EEEEEEECCCC-----c-cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEec
Confidence 66666543222 1 2334589999999999999999999875 4555443
No 136
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=29.90 E-value=36 Score=20.11 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=27.7
Q ss_pred eEEecCCCchHHHHHHHHHhhc------cCcc----ceEEEEEcCccCCCCc
Q 034290 31 RYLVPADLTVGQFVYVIRKRIK------LSAE----KAIFIFVDNVLPPTGA 72 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~------l~~~----~slfl~Vnn~lp~~~~ 72 (99)
.+-+|...|+++++..|..+.. +..+ ..+-++||+.....+.
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~ 72 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGE 72 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTS
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCc
Confidence 3457788999999999987752 2211 2367889986444343
No 137
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.53 E-value=31 Score=19.79 Aligned_cols=26 Identities=12% Similarity=0.333 Sum_probs=14.3
Q ss_pred CchHHHHHhhhc---------CCCCeEEEEecCcc
Q 034290 71 GAIMSTIYDEKK---------DEDGFLYVTYSGEN 96 (99)
Q Consensus 71 ~~~m~~lY~~~k---------d~DGfLYl~Ys~~~ 96 (99)
...|.+++..|. +.-||-++.|.+.+
T Consensus 19 e~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~ 53 (88)
T 1wf0_A 19 EDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQ 53 (88)
T ss_dssp HHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHH
T ss_pred HHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHH
Confidence 335555555552 23467777776543
No 138
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=29.35 E-value=39 Score=23.75 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.0
Q ss_pred HHHHHhhccCccceEEEEEc
Q 034290 45 YVIRKRIKLSAEKAIFIFVD 64 (99)
Q Consensus 45 ~~irk~l~l~~~~slfl~Vn 64 (99)
.-||++|++.+++.|.+++.
T Consensus 20 keiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 20 KEIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp HHHHHHTTCCTTCEEEEEEC
T ss_pred HHHHHHcCcCCCCEEEEEEe
Confidence 35799999999999999997
No 139
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=29.05 E-value=88 Score=19.81 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=38.8
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI 77 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l 77 (99)
...|.|.++..+.-++...-+|.+++++.-.|||=+..+ ++++|-.+|
T Consensus 32 ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI-~~~~TP~~L 79 (95)
T 2l76_A 32 LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETEL-SPTATPRTL 79 (95)
T ss_dssp EEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEEC-CTTSCHHHH
T ss_pred EEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCC-CCCCCHhHc
Confidence 567889999999999999999999999988888866554 444555555
No 140
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=28.44 E-value=62 Score=23.66 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=35.7
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEecCc
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYSGE 95 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys~~ 95 (99)
+-|.=..+++..+|...+++. ++ |+.| .|++. .+.++|++... .|..|+++.|+.
T Consensus 37 ~~y~D~~di~~~efy~~~~~~-~~-p~TS--------qps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 92 (289)
T 1pzx_A 37 QDYKDGITIEPKQVYDAMRQG-HT-VKTA--------QPSPL-AMKELFLPYAKENRPCLYIAFSSK 92 (289)
T ss_dssp EEEEBTTTBCHHHHHHHHTTT-CC-CEEE--------CCCHH-HHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEecCCCCCHHHHHHHHHhC-CC-CeeC--------CCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 344434578889999888754 22 3332 45543 47778877744 367999998874
No 141
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=28.15 E-value=1.3e+02 Score=19.70 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=49.3
Q ss_pred eeeEE-ecCCCchHHHHHHHHHhhccCc------------------cceEEEEEc-C--ccCCCCchHHHHHhhhcCCCC
Q 034290 29 CCRYL-VPADLTVGQFVYVIRKRIKLSA------------------EKAIFIFVD-N--VLPPTGAIMSTIYDEKKDEDG 86 (99)
Q Consensus 29 k~Kfl-vp~~~tv~~f~~~irk~l~l~~------------------~~slfl~Vn-n--~lp~~~~~m~~lY~~~kd~DG 86 (99)
..+|+ -+.+-||.++-..|.-||.|+. +-.||+.-+ + +..+.++++.++-++|=--+.
T Consensus 22 ~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~L~gs~tLe~VneKywkvnk 101 (111)
T 3gs2_A 22 QTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVLDGSFSLELVSEKYWKVNK 101 (111)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEECCTTSBHHHHHHHHTCSSS
T ss_pred ceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEEccCcccHHHHhhhhccCCC
Confidence 55666 7889999999999998887662 223444433 2 257899999999999955577
Q ss_pred eEEEEecC
Q 034290 87 FLYVTYSG 94 (99)
Q Consensus 87 fLYl~Ys~ 94 (99)
=|-|-||-
T Consensus 102 plelYYa~ 109 (111)
T 3gs2_A 102 PMELYYAP 109 (111)
T ss_dssp CEEEEEEE
T ss_pred CeeEEecc
Confidence 88888874
No 142
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.94 E-value=23 Score=21.22 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=35.5
Q ss_pred eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCC-chHHHHHhhhcC-CCCeEEEEec
Q 034290 31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSTIYDEKKD-EDGFLYVTYS 93 (99)
Q Consensus 31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~-~~m~~lY~~~kd-~DGfLYl~Ys 93 (99)
.+-|+.+.||+++...|..+. ...+.| +.+++....+ .+|++. .- ++..|+|...
T Consensus 21 ~~~v~~~~TV~~LK~~i~~~~--~~~qrL--i~~Gk~L~D~~~tL~~y----~i~~g~~i~l~~~ 77 (95)
T 1wia_A 21 LAVARPEDTVGTLKSKYFPGQ--ESQMKL--IYQGRLLQDPARTLSSL----NITNNCVIHCHRS 77 (95)
T ss_dssp EEEECSSSBHHHHHHHHSSST--TTTCEE--EETTEECCCSSCBTTTT----TCCTTEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHhhC--cCcEEE--EECCEEccCCcCCHHHc----CCCCCCEEEEEEC
Confidence 345899999999999988776 444444 3466655555 777763 22 2336766553
No 143
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.88 E-value=80 Score=18.80 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=6.8
Q ss_pred CeEEEEecCc
Q 034290 86 GFLYVTYSGE 95 (99)
Q Consensus 86 GfLYl~Ys~~ 95 (99)
||-+|.|.+.
T Consensus 51 g~afV~f~~~ 60 (108)
T 1x4c_A 51 GTGVVEFVRK 60 (108)
T ss_dssp TEEEEEESSH
T ss_pred CEEEEEECCH
Confidence 7777777654
No 144
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=26.35 E-value=78 Score=18.38 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=22.8
Q ss_pred EEEcCccC-CCCchHHHHHhhhcC---------CCCeEEEEecCcc
Q 034290 61 IFVDNVLP-PTGAIMSTIYDEKKD---------EDGFLYVTYSGEN 96 (99)
Q Consensus 61 l~Vnn~lp-~~~~~m~~lY~~~kd---------~DGfLYl~Ys~~~ 96 (99)
|||+|--+ ..+..|.+++.+|.. .-||-++.|.+.+
T Consensus 14 l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 14 VFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDK 59 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHH
T ss_pred EEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHH
Confidence 55665322 344567777777742 3488889887654
No 145
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=25.91 E-value=86 Score=19.64 Aligned_cols=37 Identities=8% Similarity=-0.048 Sum_probs=29.9
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCc
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV 66 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~ 66 (99)
+.+..|.++.++.|++..-.+++++++++- -|.-|++
T Consensus 21 r~~VKvtp~t~L~~VL~eaC~K~gl~~~~~-~Lkh~~k 57 (90)
T 2al3_A 21 RHTVKVTPSTVLLQVLEDTCRRQDFNPSEY-DLKFQRT 57 (90)
T ss_dssp EEEECCCTTSBHHHHHHHHHHHTTCCGGGC-EEEETTE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCChhhC-eEEeCCE
Confidence 888889999999999999999999987653 3444444
No 146
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=25.14 E-value=45 Score=19.12 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=23.4
Q ss_pred cCCCchHHHHHHHHHhhc-----cCccceEEEEEcCccCCCC
Q 034290 35 PADLTVGQFVYVIRKRIK-----LSAEKAIFIFVDNVLPPTG 71 (99)
Q Consensus 35 p~~~tv~~f~~~irk~l~-----l~~~~slfl~Vnn~lp~~~ 71 (99)
+...|+++++..|..+.. ++. ..+.+.||+...+.+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~-~~~~v~vN~~~v~~~ 63 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALED-GKLLAAVNQTLVSFD 63 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCC-TTCEEEETTEECCTT
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcC-CCEEEEECCEECCCC
Confidence 466799999988875521 332 346799998644333
No 147
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=24.39 E-value=16 Score=25.90 Aligned_cols=43 Identities=9% Similarity=0.249 Sum_probs=0.0
Q ss_pred EEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHH
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMS 75 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~ 75 (99)
+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|+
T Consensus 15 LeV~~sdTV~~LK~kI~~keGIP~~qQR-LIf~GK~LeD~~TLs 57 (189)
T 2xzm_9 15 YTLEQGTSVLDLKSQISQDMGFEIDMMT-LVNNGFIAPNTELVT 57 (189)
T ss_dssp --------------------------------------------
T ss_pred EEECCcChHHHHHHHHHHHhCcChhHEE-EEecCeECCCCCccc
Confidence 3488899999999999999999876533 334555445566676
No 148
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.05 E-value=1.2e+02 Score=19.46 Aligned_cols=48 Identities=2% Similarity=0.054 Sum_probs=34.3
Q ss_pred eeeEEecCCCchHHHHHHHHHhh------ccC-ccceEEEEEcCccCCCCchHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRI------KLS-AEKAIFIFVDNVLPPTGAIMST 76 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l------~l~-~~~slfl~Vnn~lp~~~~~m~~ 76 (99)
...+-|..+.||+++...|..+. +++ +-+.+=|..+++....+.+|++
T Consensus 28 t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~ 82 (116)
T 1wgh_A 28 TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGA 82 (116)
T ss_dssp EEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTT
T ss_pred EEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHH
Confidence 44567999999999999999843 332 3344566667776677778876
No 149
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=24.03 E-value=65 Score=20.95 Aligned_cols=48 Identities=2% Similarity=0.048 Sum_probs=33.9
Q ss_pred eeeEEecCCCchHHHHHHHHHh------hccC-ccceEEEEEcCccCCCCchHHH
Q 034290 29 CCRYLVPADLTVGQFVYVIRKR------IKLS-AEKAIFIFVDNVLPPTGAIMST 76 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~------l~l~-~~~slfl~Vnn~lp~~~~~m~~ 76 (99)
..-+-|+++.||+++...|... =+++ +-+.+=|..+++....+.+|++
T Consensus 29 ~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~ 83 (125)
T 2gow_A 29 TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGA 83 (125)
T ss_dssp EEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGG
T ss_pred EEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHH
Confidence 4456699999999999999973 3443 2344566666666667778876
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=23.86 E-value=1.1e+02 Score=19.18 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=22.5
Q ss_pred EEEEcCccC-CCCchHHHHHhhhc---------CCCCeEEEEecCcc
Q 034290 60 FIFVDNVLP-PTGAIMSTIYDEKK---------DEDGFLYVTYSGEN 96 (99)
Q Consensus 60 fl~Vnn~lp-~~~~~m~~lY~~~k---------d~DGfLYl~Ys~~~ 96 (99)
-|||.|--+ -.+..|.+++..|. |.-||-++.|.+.+
T Consensus 75 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~ 121 (150)
T 2i2y_A 75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPR 121 (150)
T ss_dssp EEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHH
Confidence 355665322 24556777777773 23578888887653
No 151
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=23.74 E-value=1.4e+02 Score=21.12 Aligned_cols=30 Identities=17% Similarity=0.065 Sum_probs=26.3
Q ss_pred eeeEEecCCCchHHHHHHHHHhhccCccce
Q 034290 29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKA 58 (99)
Q Consensus 29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~s 58 (99)
...+-|.+..|+.++...|.++|+|...+-
T Consensus 12 ~~~~~v~~~tt~~el~~~v~~~l~L~e~~~ 41 (294)
T 1ef1_A 12 ELEFAIQPNTTGKQLFDQVVKTIGLREVWF 41 (294)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHTCCCGGG
T ss_pred eEEEEECCCCcHHHHHHHHHHHcCCCCcce
Confidence 445889999999999999999999987763
No 152
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.88 E-value=64 Score=19.53 Aligned_cols=55 Identities=9% Similarity=-0.080 Sum_probs=36.0
Q ss_pred EEecCCCchHHHHHHHHHhhccCccc-eEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEec
Q 034290 32 YLVPADLTVGQFVYVIRKRIKLSAEK-AIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS 93 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l~l~~~~-slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys 93 (99)
+-|+.+.||++|...|..+-++++++ .|+ .+++....+ +|++ |.= ++..|+|.-+
T Consensus 22 l~v~~~~TV~~lK~~I~~~tgip~~~QkLi--~~Gk~L~D~-tL~~----~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 22 VELNTDEPPMVFKAQLFALTGVQPARQKVM--VKGGTLKDD-DWGN----IKMKNGMTVLMMGS 78 (96)
T ss_dssp EEEESSSCHHHHHHHHHHHTCCCTTTSCCE--ETTEECCSS-CCCS----CCCCSSCEEECCCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECCcCCCCC-CHHH----CCCCCCCEEEEEec
Confidence 45899999999999999999998653 333 466554544 5554 222 2336665444
No 153
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.21 E-value=58 Score=18.66 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=8.8
Q ss_pred ecCCCchHHHHHHHHH
Q 034290 34 VPADLTVGQFVYVIRK 49 (99)
Q Consensus 34 vp~~~tv~~f~~~irk 49 (99)
+|.+.|-.++..+..+
T Consensus 16 Lp~~~t~~~l~~~F~~ 31 (93)
T 2cqh_A 16 LSPAVTADDLRQLFGD 31 (93)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 5555665555555543
No 154
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.79 E-value=51 Score=19.80 Aligned_cols=54 Identities=9% Similarity=0.065 Sum_probs=33.2
Q ss_pred EecCCCchHHHHHHHHHh-hccCccceEEEEEc-CccCCCCchHHHHHhhhcC-CCCeEEE
Q 034290 33 LVPADLTVGQFVYVIRKR-IKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKD-EDGFLYV 90 (99)
Q Consensus 33 lvp~~~tv~~f~~~irk~-l~l~~~~slfl~Vn-n~lp~~~~~m~~lY~~~kd-~DGfLYl 90 (99)
-|+++.||+++...|.++ -++++.+--.+|.. ++....+.+|++ |.- ++..||+
T Consensus 29 ~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~----y~i~~~stl~~ 85 (88)
T 2dzj_A 29 KVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQK----LPVGTTATLYF 85 (88)
T ss_dssp EECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTT----SSCCSEEEEEE
T ss_pred EcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHH----cCCCCCCEEEE
Confidence 489999999999999984 56765443223332 344455556654 222 3446665
No 155
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=21.18 E-value=1.1e+02 Score=20.11 Aligned_cols=45 Identities=9% Similarity=0.052 Sum_probs=32.7
Q ss_pred EEecCCCchHHHHHHHHHhh-----ccCcc-ceEEEEEcCccCCCCchHHH
Q 034290 32 YLVPADLTVGQFVYVIRKRI-----KLSAE-KAIFIFVDNVLPPTGAIMST 76 (99)
Q Consensus 32 flvp~~~tv~~f~~~irk~l-----~l~~~-~slfl~Vnn~lp~~~~~m~~ 76 (99)
+-++++.||+++...|+... ++++. +..=|..+++....+.+|++
T Consensus 32 l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsd 82 (126)
T 1se9_A 32 KAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKD 82 (126)
T ss_dssp EEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGG
T ss_pred eecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHH
Confidence 56899999999999997644 34432 44556667777778888885
No 156
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=20.96 E-value=54 Score=18.78 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=25.7
Q ss_pred CCCchHHHHHHHHHhhccCcc-ceEEEEEcCcc-CCCCchH
Q 034290 36 ADLTVGQFVYVIRKRIKLSAE-KAIFIFVDNVL-PPTGAIM 74 (99)
Q Consensus 36 ~~~tv~~f~~~irk~l~l~~~-~slfl~Vnn~l-p~~~~~m 74 (99)
...|+++++..|..+-.+..- +.+-+.||+.. +..+..+
T Consensus 19 ~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l 59 (74)
T 3rpf_C 19 KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPL 59 (74)
T ss_dssp ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCC
T ss_pred CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCC
Confidence 567999999888765333321 45778999865 6544433
No 157
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=20.89 E-value=40 Score=19.22 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=24.0
Q ss_pred EecCCCchHHHHHHHHHhhccCccceE--EEEEcCccCCCC
Q 034290 33 LVPADLTVGQFVYVIRKRIKLSAEKAI--FIFVDNVLPPTG 71 (99)
Q Consensus 33 lvp~~~tv~~f~~~irk~l~l~~~~sl--fl~Vnn~lp~~~ 71 (99)
-++...|+++++..+..+.. .-+.+ -+.||+...+.+
T Consensus 21 ~~~~~~tv~~ll~~l~~~~p--~~~~v~~~v~vNg~~v~~~ 59 (77)
T 2q5w_D 21 VLEQALTVQQFEDLLFERYP--QINNKKFQVAVNEEFVQKS 59 (77)
T ss_dssp CCSSCEEHHHHHHHHHHHCG--GGTTCCCEEEETTEEECTT
T ss_pred ECCCCCCHHHHHHHHHHHCc--chhcceEEEEECCEECCCC
Confidence 35778899999988876631 11234 688998643333
No 158
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=20.76 E-value=1.3e+02 Score=21.70 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=36.3
Q ss_pred eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCC-CCeEEEEecCc
Q 034290 30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYSGE 95 (99)
Q Consensus 30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~-DGfLYl~Ys~~ 95 (99)
+-|.=..+++..+|...+++.-.+ |+.| .|++. .+.++|++...+ |..|+++.|+.
T Consensus 35 ~~y~D~~di~~~efy~~~~~~~~~-p~TS--------qps~~-~~~~~f~~l~~~~~~ii~i~lSs~ 91 (280)
T 2dt8_A 35 AIYRDWEEITPTEIFQKVREGAAF-PTTS--------QPSPE-DFARVYREALEEADHVLSLHISGK 91 (280)
T ss_dssp EEEETTTTCCHHHHHHHHHTTCCC-CEEE--------CCCHH-HHHHHHHHHTTSCSEEEEEESCTT
T ss_pred EEEecCCCCCHHHHHHHHHhCCCC-cccC--------CCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 334434578889999988764222 2222 44443 677888887554 77999998874
No 159
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=20.53 E-value=96 Score=23.22 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=36.2
Q ss_pred eeeEEec--CCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEecCc
Q 034290 29 CCRYLVP--ADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYSGE 95 (99)
Q Consensus 29 k~Kflvp--~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys~~ 95 (99)
.+-|.=. .+++..+|...+++. .. |+.| .|++ ..+.++|++..+ -|..|+++.|+.
T Consensus 68 ~~~Y~D~vd~~i~~~efy~~m~~~-~~-p~TS--------qPs~-~~~~~~f~~l~~~g~~Ii~I~iSS~ 126 (320)
T 3pl5_A 68 GITYETVGPDRLTSRVLLEKIAAG-SK-PTTS--------QVNV-GQFESYFRQSAENGQEVLYIAFSSV 126 (320)
T ss_dssp TEEEESSSTTCCCHHHHHHHHHTT-CC-CEEE--------CCCH-HHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CEEEEcCCCCCcCHHHHHHHHhcC-CC-CccC--------CCCH-HHHHHHHHHHHHCCCeEEEEecCch
Confidence 3445433 448999999998763 22 3333 4444 467788887654 377999998874
No 160
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.31 E-value=1.4e+02 Score=17.67 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=7.3
Q ss_pred CCeEEEEecCcc
Q 034290 85 DGFLYVTYSGEN 96 (99)
Q Consensus 85 DGfLYl~Ys~~~ 96 (99)
-||-+|.|.+.+
T Consensus 67 ~g~afV~f~~~~ 78 (114)
T 2cq4_A 67 KGIAYVEFCEIQ 78 (114)
T ss_dssp CCCEEEEESCGG
T ss_pred CcEEEEEeCcHH
Confidence 356777776543
Done!