BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034293
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GY7|A Chain A, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|B Chain B, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|C Chain C, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|D Chain D, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GYB|A Chain A, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|B Chain B, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|C Chain C, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|D Chain D, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
Length = 125
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 61/83 (73%)
Query: 1 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQC 60
+D +++A+ F + YY FD +R+ L NLY+ SMLTFE ++QG+++IV KL SLPFQ+
Sbjct: 3 LDFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKV 62
Query: 61 QHSITTVDCQPSGPAGGMLVFVS 83
QH ITT+D QP+ P G +LV ++
Sbjct: 63 QHRITTLDAQPASPYGDVLVMIT 85
>pdb|1ZO2|A Chain A, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
pdb|1ZO2|B Chain B, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
Length = 129
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
D + K FV+HYY TF NR L LY SMLT+E + QG NIV K SL FQ+ Q
Sbjct: 12 DQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWEDTQFQGQANIVNKFNSLNFQRVQFE 71
Query: 64 ITTVDCQPSGPAGGMLVFVS-DVPFD 88
IT VDCQPS P G +VFV+ DV D
Sbjct: 72 ITRVDCQPS-PNNGSIVFVTGDVRID 96
>pdb|1QMA|A Chain A, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|B Chain B, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|C Chain C, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|D Chain D, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
Length = 126
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 48/69 (69%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F++HYY FD +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 7 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 66
Query: 64 ITTVDCQPS 72
IT D QP+
Sbjct: 67 ITAQDHQPT 75
>pdb|1GY5|A Chain A, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
pdb|1GY5|B Chain B, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
Length = 127
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 48/69 (69%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F++HYY FD +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 64 ITTVDCQPS 72
IT D QP+
Sbjct: 68 ITAQDHQPT 76
>pdb|1OUN|A Chain A, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1OUN|B Chain B, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1A2K|A Chain A, Gdpran-Ntf2 Complex
pdb|1A2K|B Chain B, Gdpran-Ntf2 Complex
pdb|1GY6|A Chain A, Ntf2 From Rat, Ammonium Sulphate Conditions
pdb|1GY6|B Chain B, Ntf2 From Rat, Ammonium Sulphate Conditions
Length = 127
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 48/69 (69%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F++HYY FD +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 64 ITTVDCQPS 72
IT D QP+
Sbjct: 68 ITAQDHQPT 76
>pdb|1JB5|A Chain A, Crystal Structure Of Ntf2 M118e Mutant
pdb|1JB5|B Chain B, Crystal Structure Of Ntf2 M118e Mutant
Length = 127
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 47/69 (68%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F+ HYY FD +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 8 EQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 64 ITTVDCQPS 72
IT D QP+
Sbjct: 68 ITAQDHQPT 76
>pdb|1JB2|A Chain A, Crystal Structure Of Ntf2 M84e Mutant
pdb|1JB2|B Chain B, Crystal Structure Of Ntf2 M84e Mutant
Length = 127
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 47/69 (68%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F+ HYY FD +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 8 EQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 64 ITTVDCQPS 72
IT D QP+
Sbjct: 68 ITAQDHQPT 76
>pdb|1JB4|A Chain A, Crystal Structure Of Ntf2 M102e Mutant
pdb|1JB4|B Chain B, Crystal Structure Of Ntf2 M102e Mutant
Length = 127
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 47/69 (68%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F+ HYY FD +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 8 EQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 64 ITTVDCQPS 72
IT D QP+
Sbjct: 68 ITAQDHQPT 76
>pdb|1AR0|A Chain A, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
pdb|1AR0|B Chain B, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
Length = 127
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 48/69 (69%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F++HYY FD +RT L +Y + S LT++GQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWKGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 64 ITTVDCQPS 72
IT D QP+
Sbjct: 68 ITAQDHQPT 76
>pdb|1U5O|A Chain A, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
pdb|1U5O|B Chain B, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
Length = 127
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F++HYY F +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 8 EQIGSSFIQHYYQLFANDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 64 ITTVDCQPS 72
IT D QP+
Sbjct: 68 ITAQDHQPT 76
>pdb|1ASK|A Chain A, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
pdb|1ASK|B Chain B, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
Length = 127
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F++HYY FD +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ Q S
Sbjct: 8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQAS 67
Query: 64 ITTVDCQPS 72
IT D QP+
Sbjct: 68 ITAQDHQPT 76
>pdb|1JKG|A Chain A, Structural Basis For The Recognition Of A Nucleoporin
Fg- Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna
Nuclear Export Factor
pdb|1JN5|A Chain A, Structural Basis For The Recognition Of A Nucleoporin
Fg- Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna
Export Factor
Length = 140
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 7 AKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITT 66
A+ FV YYTT D R L+ LY + L + G + G +++ LP + Q I+
Sbjct: 17 AEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQ--ISV 74
Query: 67 VDCQP 71
VDCQP
Sbjct: 75 VDCQP 79
>pdb|3NV0|B Chain B, Crystal Structure And Mutational Analysis Of The Nxf2NXT1
Heterodimeric Complex From Caenorhabditis Elegans At
1.84 A Resolution
Length = 154
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 7 AKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITT 66
+K F++ YY D R + LY + S + G I G +I + +LP QH I +
Sbjct: 37 SKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPINGYDSICEFMKALP--STQHDIQS 94
Query: 67 VDCQ--PSGP----AGGMLVFVS 83
+D Q P G +GGML+ V+
Sbjct: 95 LDAQRLPEGVTGDMSGGMLLNVA 117
>pdb|1Q40|B Chain B, Crystal Structure Of The C. Albicans Mtr2-Mex67 M Domain
Complex
pdb|1Q40|D Chain D, Crystal Structure Of The C. Albicans Mtr2-Mex67 M Domain
Complex
Length = 219
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 2 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLT 36
D ++A F+ +Y +DANR+ L LYQ S +
Sbjct: 12 DSRNLATNFIANYLKLWDANRSELXILYQNESQFS 46
>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
pdb|3IMH|B Chain B, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
Length = 338
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 21 NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSI 64
N TG+ N + +TFE Q N + ++T LPF++ + ++
Sbjct: 282 NHTGIVNNIGQYDGITFEAQCPPAEGNDLGQITLLPFEKFKRTV 325
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 3 PDSVAKAFVEHYYTTFDANRTGLANLYQ 30
P++ KA+ +H + +FDAN G + Q
Sbjct: 57 PEADPKAYAQHVFRSFDANSDGTLDFKQ 84
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 3 PDSVAKAFVEHYYTTFDANRTGLANLYQ 30
P++ KA+ +H + +FDAN G + Q
Sbjct: 57 PEADPKAYAQHVFRSFDANSDGTLDFKQ 84
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 3 PDSVAKAFVEHYYTTFDANRTG 24
PD+ KA+ +H + +FD+N G
Sbjct: 65 PDTDPKAYAQHVFRSFDSNLDG 86
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 3 PDSVAKAFVEHYYTTFDANRTG 24
P++ KA+ +H + +FDAN G
Sbjct: 58 PEADPKAYAQHVFRSFDANSDG 79
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With
Calcium Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium
Sensor In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr,
22 Structures
Length = 201
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 3 PDSVAKAFVEHYYTTFDANRTG 24
P++ KA+ +H + +FDAN G
Sbjct: 57 PEADPKAYAQHVFRSFDANSDG 78
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 3 PDSVAKAFVEHYYTTFDANRTG 24
P++ KA+ +H + +FDAN G
Sbjct: 57 PEADPKAYAQHVFRSFDANSDG 78
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 3 PDSVAKAFVEHYYTTFDANRTG 24
P++ KA+ +H + +FDAN G
Sbjct: 57 PEADPKAYAQHVFRSFDANSDG 78
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin
Delta At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin
Delta At 2.4 Angstroms
Length = 193
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 3 PDSVAKAFVEHYYTTFDANRTGLANLYQ 30
P A F EH + TFDAN G + +
Sbjct: 57 PYGDASKFAEHVFRTFDANGDGTIDFRE 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,010,915
Number of Sequences: 62578
Number of extensions: 97748
Number of successful extensions: 253
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 29
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)