Query 034293
Match_columns 99
No_of_seqs 106 out of 660
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 11:53:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2104 Nuclear transport fact 100.0 2.7E-33 5.9E-38 180.2 8.7 96 2-98 3-100 (126)
2 cd00780 NTF2 Nuclear transport 100.0 6E-30 1.3E-34 165.7 11.8 96 2-98 1-97 (119)
3 KOG4353 RNA export factor NXT1 99.9 1.1E-27 2.4E-32 156.3 7.6 94 3-98 12-110 (139)
4 KOG0116 RasGAP SH3 binding pro 99.9 2.1E-24 4.6E-29 164.9 9.3 96 2-98 12-112 (419)
5 PF02136 NTF2: Nuclear transpo 99.9 1.4E-23 3E-28 134.5 8.0 93 6-98 1-98 (118)
6 PF10429 Mtr2: Nuclear pore RN 99.7 8.4E-18 1.8E-22 114.2 8.3 94 2-96 2-100 (166)
7 cd00531 NTF2_like Nuclear tran 98.6 7.3E-07 1.6E-11 54.9 9.3 84 8-91 2-93 (124)
8 KOG3763 mRNA export factor TAP 98.0 2.5E-05 5.3E-10 62.2 7.0 90 4-95 338-464 (585)
9 TIGR02246 conserved hypothetic 97.4 0.0037 8.1E-08 39.3 9.8 69 3-71 2-75 (128)
10 PF12680 SnoaL_2: SnoaL-like d 97.2 0.0021 4.4E-08 38.3 5.9 57 11-67 1-60 (102)
11 PF15008 DUF4518: Domain of un 97.1 0.0035 7.7E-08 46.0 8.0 88 2-91 126-228 (262)
12 cd00781 ketosteroid_isomerase 96.8 0.015 3.3E-07 36.5 7.9 50 7-56 5-57 (122)
13 PF14534 DUF4440: Domain of un 96.7 0.02 4.4E-07 34.4 7.7 80 9-90 3-83 (107)
14 PF13474 SnoaL_3: SnoaL-like d 96.5 0.04 8.7E-07 34.0 8.3 79 8-88 2-85 (121)
15 TIGR02096 conserved hypothetic 95.4 0.075 1.6E-06 33.5 5.9 57 10-66 3-64 (129)
16 PF08332 CaMKII_AD: Calcium/ca 94.0 0.66 1.4E-05 30.6 7.8 87 4-91 3-95 (128)
17 PF13577 SnoaL_4: SnoaL-like d 93.9 0.18 4E-06 31.4 4.9 67 5-71 7-79 (127)
18 PRK09636 RNA polymerase sigma 90.2 1.5 3.2E-05 32.1 6.5 51 6-56 172-231 (293)
19 TIGR02960 SigX5 RNA polymerase 85.5 3.5 7.6E-05 30.2 6.1 50 6-55 205-257 (324)
20 PRK08241 RNA polymerase factor 81.8 3.1 6.6E-05 30.8 4.5 51 5-55 214-267 (339)
21 PF07366 SnoaL: SnoaL-like pol 81.3 8.4 0.00018 24.0 5.9 58 12-69 5-66 (126)
22 PF07080 DUF1348: Protein of u 73.3 2.9 6.2E-05 28.1 2.0 38 17-54 22-60 (143)
23 TIGR02957 SigX4 RNA polymerase 62.4 30 0.00065 25.1 5.7 65 7-71 166-242 (281)
24 PF12893 Lumazine_bd_2: Putati 62.4 35 0.00075 21.1 5.9 66 6-71 5-79 (116)
25 COG4875 Uncharacterized protei 61.7 31 0.00068 23.0 5.1 52 3-54 36-89 (156)
26 COG4319 Ketosteroid isomerase 60.2 35 0.00077 22.8 5.2 72 16-89 21-95 (137)
27 cd03829 Sina Seven in absentia 55.1 25 0.00053 23.3 3.7 45 12-56 49-101 (127)
28 COG3631 Ketosteroid isomerase- 54.3 60 0.0013 21.3 6.7 50 7-56 6-62 (133)
29 COG4922 Uncharacterized protei 47.2 80 0.0017 20.8 5.1 49 6-55 6-56 (129)
30 PF07858 LEH: Limonene-1,2-epo 46.4 81 0.0018 20.6 6.1 84 3-90 3-104 (125)
31 smart00593 RUN domain involved 46.3 22 0.00047 20.0 2.2 45 8-56 11-55 (64)
32 PF12642 TpcC: Conjugative tra 45.2 9.2 0.0002 26.8 0.6 28 6-33 2-34 (232)
33 PF05553 DUF761: Cotton fibre 43.1 31 0.00068 18.0 2.3 18 3-20 5-22 (38)
34 COG2920 DsrC Dissimilatory sul 43.0 20 0.00044 23.0 1.8 15 8-22 49-63 (111)
35 PF02759 RUN: RUN domain; Int 42.1 18 0.0004 22.7 1.6 24 12-35 83-106 (133)
36 PF15601 Imm42: Immunity prote 40.7 8.4 0.00018 25.7 -0.2 64 8-74 15-90 (134)
37 PF01941 AdoMet_Synthase: S-ad 35.6 77 0.0017 24.9 4.3 38 47-87 236-273 (396)
38 PF07341 DUF1473: Protein of u 35.5 21 0.00045 24.3 1.1 20 5-24 56-75 (163)
39 COG5073 VID24 Vacuolar import 35.2 22 0.00049 26.2 1.3 70 14-90 57-126 (272)
40 PF04308 DUF458: Protein of un 33.1 1.5E+02 0.0033 19.9 5.7 42 45-88 4-45 (144)
41 KOG0480 DNA replication licens 31.5 19 0.00041 30.2 0.5 80 5-97 74-153 (764)
42 KOG4381 RUN domain-containing 31.4 31 0.00066 26.8 1.5 41 13-53 133-178 (368)
43 TIGR03687 pupylate_cterm ubiqu 30.9 45 0.00098 16.9 1.6 12 5-16 18-29 (33)
44 PF12392 DUF3656: Collagenase 29.0 1.5E+02 0.0033 18.6 4.6 27 43-71 66-92 (122)
45 PF07029 CryBP1: CryBP1 protei 28.7 1.9E+02 0.0042 19.9 4.9 28 62-89 132-159 (161)
46 TIGR03221 muco_delta muconolac 28.6 95 0.0021 19.3 3.1 31 41-71 56-87 (90)
47 COG3558 Uncharacterized protei 28.3 18 0.00038 24.1 -0.2 34 21-54 29-62 (154)
48 PF02197 RIIa: Regulatory subu 27.8 29 0.00063 17.8 0.6 14 9-22 24-37 (38)
49 PF02898 NO_synthase: Nitric o 26.7 60 0.0013 25.3 2.4 17 5-21 11-27 (372)
50 PLN02873 coproporphyrinogen-II 26.2 44 0.00096 24.9 1.5 51 4-56 177-243 (274)
51 PRK01151 rps17E 30S ribosomal 26.1 78 0.0017 18.1 2.2 18 4-21 9-26 (58)
52 PF12057 DUF3538: Domain of un 26.0 49 0.0011 21.7 1.6 15 8-22 16-30 (120)
53 PF02426 MIase: Muconolactone 25.9 1E+02 0.0022 19.1 2.9 31 41-71 57-88 (91)
54 PF07293 DUF1450: Protein of u 25.8 1.4E+02 0.0031 17.9 3.5 51 38-92 9-61 (78)
55 COG0408 HemF Coproporphyrinoge 25.6 1.1E+02 0.0024 23.0 3.5 51 4-56 207-273 (303)
56 PF08082 PRO8NT: PRO8NT (NUC06 24.8 98 0.0021 21.1 2.9 39 45-94 39-77 (152)
57 PF09053 CagZ: CagZ; InterPro 23.6 72 0.0016 21.6 2.1 19 1-19 22-40 (199)
58 PRK04439 S-adenosylmethionine 23.2 1.6E+02 0.0035 23.2 4.2 37 48-87 237-273 (399)
59 cd05883 Ig2_Necl-2 Second immu 23.0 1.8E+02 0.0039 17.4 4.3 49 30-83 12-62 (82)
60 cd00454 Trunc_globin Truncated 21.3 1.3E+02 0.0028 18.4 2.8 26 6-32 11-36 (116)
61 TIGR03342 dsrC_tusE_dsvC sulfu 20.9 81 0.0018 20.2 1.8 15 8-22 46-60 (108)
62 PF03791 KNOX2: KNOX2 domain ; 20.8 61 0.0013 18.1 1.1 23 8-30 12-34 (52)
63 COG4615 PvdE ABC-type sideroph 20.8 63 0.0014 26.0 1.5 19 25-43 369-388 (546)
64 cd00794 NOS_oxygenase_prok Nit 20.1 79 0.0017 24.5 1.9 16 5-20 4-19 (353)
No 1
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-33 Score=180.25 Aligned_cols=96 Identities=56% Similarity=0.829 Sum_probs=92.4
Q ss_pred Ch--HHHHHHHHHHHHHhHccChhhhhccccCCceEEEcCcccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCCCCCEE
Q 034293 2 DP--DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGML 79 (99)
Q Consensus 2 ~~--~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~il 79 (99)
|+ +.||.+|+++||.+||++|.+|..+|.+.|+|+|||+.+.|.++|.+||.+|||.+++|.|+++|||| +++||||
T Consensus 3 d~~~e~v~~~FvqhYY~~FD~dR~ql~~lY~~~S~LTfEGqq~qG~~~IveKl~sLpFqkiqh~IttvD~QP-t~~g~il 81 (126)
T KOG2104|consen 3 DPVYEAVAKAFVQHYYSLFDNDRSQLGALYIDTSMLTFEGQQIQGKDAIVEKLTSLPFQKIQHSITTVDSQP-TPDGGIL 81 (126)
T ss_pred CccHHHHHHHHHHHHHHHhcCchhHhhhhhcccceeeEcchhhcchHHHHHHHhcCChhhhhceeeeccccc-CCCCcEE
Confidence 56 89999999999999999999999999999999999999999999999999999999999999999999 4899999
Q ss_pred EEEEEEEEeCCCCCccccc
Q 034293 80 VFVSDVPFDANTSGKLLCV 98 (99)
Q Consensus 80 i~V~G~~~~~~~~~~~~~~ 98 (99)
|+|+|.++.++++..+|-|
T Consensus 82 v~V~G~Lk~dEd~~~~FsQ 100 (126)
T KOG2104|consen 82 VMVVGQLKLDEDPILRFSQ 100 (126)
T ss_pred EEEeeeeeeccCCccceee
Confidence 9999999999999988755
No 2
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=99.97 E-value=6e-30 Score=165.72 Aligned_cols=96 Identities=46% Similarity=0.775 Sum_probs=91.9
Q ss_pred ChHHHHHHHHHHHHHhHccChhhhhccccCCceEEEcC-cccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCCCCCEEE
Q 034293 2 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEG-QKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLV 80 (99)
Q Consensus 2 ~~~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~~g-~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~ili 80 (99)
+|++||+.||++||+.|+++|+.|++||.++|.|+|+| +.+.|.++|.++|++||++.++|+|.++||||+ ++++++|
T Consensus 1 ~~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~~~~~~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~-~~~~ili 79 (119)
T cd00780 1 SAEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSREGMKQVTGRDAIVEKLSSLPFQKTKHKITTVDSQPT-PSGGVIV 79 (119)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEEECCceEecCHHHHHHHHHhCCCcceEEEEEEEeeeEc-CCCCEEE
Confidence 57899999999999999999999999999999999999 999999999999999998889999999999995 6799999
Q ss_pred EEEEEEEeCCCCCccccc
Q 034293 81 FVSDVPFDANTSGKLLCV 98 (99)
Q Consensus 81 ~V~G~~~~~~~~~~~~~~ 98 (99)
+|+|.++.++.+++.|.|
T Consensus 80 ~V~G~~~~~~~~~~~F~q 97 (119)
T cd00780 80 MVTGSLKLDEQPPRKFSQ 97 (119)
T ss_pred EEEEEEEECCCCceeEeE
Confidence 999999999999998876
No 3
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=99.95 E-value=1.1e-27 Score=156.29 Aligned_cols=94 Identities=26% Similarity=0.501 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHhHccChhhhhccccCCceEEEcCcccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCC-----CCC
Q 034293 3 PDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGP-----AGG 77 (99)
Q Consensus 3 ~~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~-----~~~ 77 (99)
+...|++||+.||..||++|+.|.+||.++|+++||||++.|.+.|.+++..|| +++|+|.++||||+.. ..+
T Consensus 12 ~cr~A~eFv~~YY~smD~rR~~i~rlY~~~atlvWNGn~v~g~esls~ff~~LP--sS~~qi~~lD~Qpv~dqat~~q~~ 89 (139)
T KOG4353|consen 12 ACRAAEEFVNVYYSSMDKRRRGIGRLYLDNATLVWNGNPVSGTESLSEFFNMLP--SSEFQINDLDCQPVHDQATGSQTT 89 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhccceEEEcCCcchhHHHHHHHHHhCC--Cccccccccccccchhhcccccce
Confidence 446899999999999999999999999999999999999999999999999999 9999999999999531 246
Q ss_pred EEEEEEEEEEeCCCCCccccc
Q 034293 78 MLVFVSDVPFDANTSGKLLCV 98 (99)
Q Consensus 78 ili~V~G~~~~~~~~~~~~~~ 98 (99)
+||+|+|.+++++++.|.|=|
T Consensus 90 vLvvvsGtVkFdG~k~r~F~q 110 (139)
T KOG4353|consen 90 VLVVVSGTVKFDGNKQRVFNQ 110 (139)
T ss_pred EEEEEeeeEEEcCCccccccc
Confidence 999999999999999987744
No 4
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.91 E-value=2.1e-24 Score=164.89 Aligned_cols=96 Identities=26% Similarity=0.497 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHHHHHhHccChhhhhccccCCceEEEcC---c--ccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCCCC
Q 034293 2 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEG---Q--KIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAG 76 (99)
Q Consensus 2 ~~~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~~g---~--~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~ 76 (99)
+|+.||..||++||+.|++.|+.||+||.++|.|++-| . .+.|.++|++++++|+|..++.+|.++|+|. ++++
T Consensus 12 ~~~~vg~~Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~tvdsQ~-S~~~ 90 (419)
T KOG0116|consen 12 TPQLVGNEFVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEISTVDSQA-SLEK 90 (419)
T ss_pred CHHHHHHHHHHHHHHHHhhChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEEEEehhh-hccC
Confidence 78999999999999999999999999999999999954 3 6899999999999999999999999999999 5899
Q ss_pred CEEEEEEEEEEeCCCCCccccc
Q 034293 77 GMLVFVSDVPFDANTSGKLLCV 98 (99)
Q Consensus 77 ~ili~V~G~~~~~~~~~~~~~~ 98 (99)
||+|+|+|.++.++.++|+|||
T Consensus 91 GvvI~VtG~lt~~~~~rRkF~Q 112 (419)
T KOG0116|consen 91 GVVIMVTGYLTNKDGPRRKFSQ 112 (419)
T ss_pred CeEEEEEEEEEeCCCcceEEEE
Confidence 9999999999999999999998
No 5
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=99.90 E-value=1.4e-23 Score=134.48 Aligned_cols=93 Identities=38% Similarity=0.677 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhHcc-Chhhhhccc-cCCceEEEcCc-ccccHHHHHHHHhcCCCCceeEEEEEeeeeee-CCCCCEEEE
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLY-QEGSMLTFEGQ-KIQGSQNIVAKLTSLPFQQCQHSITTVDCQPS-GPAGGMLVF 81 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY-~~~S~l~~~g~-~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~-~~~~~ili~ 81 (99)
||+.||++||+.|++ +|+.|++|| .+.|.++|+|+ .+.|.++|.++|.+||...++|.|.++||||+ ..+++|+|+
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~~~~~i~i~ 80 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPSSDGSILIT 80 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEECCSEEEEE
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCcccEEEecccccccccccCCcEEEE
Confidence 689999999999999 999999999 88899999999 99999999999999996666999999999952 367999999
Q ss_pred EEEEEEeCCCC-Cccccc
Q 034293 82 VSDVPFDANTS-GKLLCV 98 (99)
Q Consensus 82 V~G~~~~~~~~-~~~~~~ 98 (99)
|+|.++.++.+ .+.|.|
T Consensus 81 v~G~~~~~~~~~~~~F~q 98 (118)
T PF02136_consen 81 VTGQFKEDDNPNPRRFSQ 98 (118)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred EEeEEEecCCCcccEEEE
Confidence 99999999987 566654
No 6
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=99.74 E-value=8.4e-18 Score=114.19 Aligned_cols=94 Identities=18% Similarity=0.281 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHHHHHhHc-----cChhhhhccccCCceEEEcCcccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCCCC
Q 034293 2 DPDSVAKAFVEHYYTTFD-----ANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAG 76 (99)
Q Consensus 2 ~~~~ig~~Fv~~YY~~l~-----~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~ 76 (99)
++..+++.||+.||..|| +.++-|..||.+++.++|||+++.+..+.++.|++.| -.++|+++++|||.++..|
T Consensus 2 ~~tq~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II~Ng~Pi~~~~~F~~~w~~~p-v~TqH~L~s~D~H~IPGsg 80 (166)
T PF10429_consen 2 DQTQIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKIIWNGTPIAQPTAFQQTWQQQP-VQTQHQLTSFDCHVIPGSG 80 (166)
T ss_dssp -CCCCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEEETTEEES-HHHHHHHHHCCS---EEEEEEEEEEEEETTTT
T ss_pred CcchhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEEECCccCCCHHHHHHHHHhCc-cceeeeeeeeeeeEeCCCC
Confidence 456788999999999999 3367788999999999999999999999999999999 5789999999999997788
Q ss_pred CEEEEEEEEEEeCCCCCccc
Q 034293 77 GMLVFVSDVPFDANTSGKLL 96 (99)
Q Consensus 77 ~ili~V~G~~~~~~~~~~~~ 96 (99)
+++|.|+|.|++|++.|.+.
T Consensus 81 t~i~N~n~KVRFDEsGrdk~ 100 (166)
T PF10429_consen 81 TFIINVNCKVRFDESGRDKL 100 (166)
T ss_dssp EEEEEEEEEEEEB-SSB-TT
T ss_pred eEEEeeeEEEEecCCCCCCC
Confidence 99999999999988877643
No 7
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=98.61 E-value=7.3e-07 Score=54.91 Aligned_cols=84 Identities=27% Similarity=0.439 Sum_probs=67.2
Q ss_pred HHHHHHHHHhHc-cChhhhhccccCCceEEEcC-----cccccHHHHHHHHhcCCC--CceeEEEEEeeeeeeCCCCCEE
Q 034293 8 KAFVEHYYTTFD-ANRTGLANLYQEGSMLTFEG-----QKIQGSQNIVAKLTSLPF--QQCQHSITTVDCQPSGPAGGML 79 (99)
Q Consensus 8 ~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~~g-----~~~~G~~~I~~~l~~l~~--~~~~~~i~s~D~q~~~~~~~il 79 (99)
..|+.+||..+| ++++.|..||.+++.+.+.+ ....|.++|.+.+..++- ....|.+.+++.+....+....
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 579999999999 67899999999999999987 577899999999998873 4566777999988843333455
Q ss_pred EEEEEEEEeCCC
Q 034293 80 VFVSDVPFDANT 91 (99)
Q Consensus 80 i~V~G~~~~~~~ 91 (99)
+.+.+.+.....
T Consensus 82 ~~~~~~~~~~~~ 93 (124)
T cd00531 82 VSVFGVLRTRGD 93 (124)
T ss_pred EEEEEEEEEccC
Confidence 677777776653
No 8
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=97.99 E-value=2.5e-05 Score=62.19 Aligned_cols=90 Identities=21% Similarity=0.312 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhHccCh-hhhhccccCCceEEEc-----C------------------------------cccccHHH
Q 034293 4 DSVAKAFVEHYYTTFDANR-TGLANLYQEGSMLTFE-----G------------------------------QKIQGSQN 47 (99)
Q Consensus 4 ~~ig~~Fv~~YY~~l~~~r-~~L~~fY~~~S~l~~~-----g------------------------------~~~~G~~~ 47 (99)
.++-.+|+++||..+|+++ ..+...|.++|+++.- + ....|...
T Consensus 338 ~~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~g~~~ 417 (585)
T KOG3763|consen 338 KQLVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKHGACD 417 (585)
T ss_pred HHHHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhccchH
Confidence 3577899999999999765 6667789999999861 0 03468889
Q ss_pred HHHHHhcCCCCceeEEEEEeeeeeeC-CCCCEEEEEEEEEEeCCCCCcc
Q 034293 48 IVAKLTSLPFQQCQHSITTVDCQPSG-PAGGMLVFVSDVPFDANTSGKL 95 (99)
Q Consensus 48 I~~~l~~l~~~~~~~~i~s~D~q~~~-~~~~ili~V~G~~~~~~~~~~~ 95 (99)
|...|.+|| +++|...++-.--.. ...++-+.|.|.+.-.+...++
T Consensus 418 Iv~aLs~LP--kT~Hdl~s~vvDv~~~~~~~l~ftv~G~f~d~~g~~~~ 464 (585)
T KOG3763|consen 418 IVVALSALP--KTQHDLDSFVVDVWYQTGNLLGFTVAGVFRDGEGQNSP 464 (585)
T ss_pred HHHHHHhCc--cchhhhhhhheeeeecccceEEEEEEEEeecCCccCCc
Confidence 999999999 999988775433321 2467778999998766555444
No 9
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=97.44 E-value=0.0037 Score=39.29 Aligned_cols=69 Identities=17% Similarity=0.389 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHhHcc-ChhhhhccccCCceEE-EcCcccccHHHHHHHHhcCC---CCceeEEEEEeeeee
Q 034293 3 PDSVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLT-FEGQKIQGSQNIVAKLTSLP---FQQCQHSITTVDCQP 71 (99)
Q Consensus 3 ~~~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~-~~g~~~~G~~~I~~~l~~l~---~~~~~~~i~s~D~q~ 71 (99)
..+.-++.++.|+..+++ +++.+..+|.+++.+. ..|....|.++|.+.+..+- ....++.+...+..-
T Consensus 2 d~~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~ 75 (128)
T TIGR02246 2 DERAIRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRF 75 (128)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEe
Confidence 345567889999999986 8999999999999987 57788999999999887532 122345565555443
No 10
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=97.15 E-value=0.0021 Score=38.28 Aligned_cols=57 Identities=16% Similarity=0.401 Sum_probs=45.5
Q ss_pred HHHHHHhHcc-ChhhhhccccCCceEEEcCcccccHHHHHHHHhcCC--CCceeEEEEEe
Q 034293 11 VEHYYTTFDA-NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLP--FQQCQHSITTV 67 (99)
Q Consensus 11 v~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~--~~~~~~~i~s~ 67 (99)
|++||..+++ +.+.+..+|.++..+...+.+..|.++|.+.+..+. +...++.+..+
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAVFHDPGGTLRGREAIREFFEEFFESFPDIRFEIHDI 60 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEEEE
Confidence 6899999986 579999999999999999888999999999988764 22444444443
No 11
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=97.14 E-value=0.0035 Score=46.01 Aligned_cols=88 Identities=19% Similarity=0.336 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHHHHHhHccChhhh--hccccCCceEEE-----cCc---ccccHHHHHHHHhcCCCCceeE---EEEE--
Q 034293 2 DPDSVAKAFVEHYYTTFDANRTGL--ANLYQEGSMLTF-----EGQ---KIQGSQNIVAKLTSLPFQQCQH---SITT-- 66 (99)
Q Consensus 2 ~~~~ig~~Fv~~YY~~l~~~r~~L--~~fY~~~S~l~~-----~g~---~~~G~~~I~~~l~~l~~~~~~~---~i~s-- 66 (99)
+.+.+|++|.+|||..|++..+++ -.|+.| +.|.. +++ .+.|.+.+...|.+|.....-+ .+.+
T Consensus 126 ~~~~L~~~F~~WFf~llNs~~~~wgpqhFW~D-a~L~~~~~~~~~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPNl~~~G 204 (262)
T PF15008_consen 126 PIHLLAEEFCEWFFELLNSPQDDWGPQHFWPD-AKLKLYYSTSEQNVEEYCEGAEEVSLRLLSLVKEERLFFNPNLDSDG 204 (262)
T ss_pred CHHHHHHHHHHHHHHHhcccccccChhhccCC-CeEEEEEEcCCCceeEEecCHHHHHHHHHHHhhcccEEECCCCCCCC
Confidence 567899999999999999944444 445544 44443 121 2479999999999987221100 1112
Q ss_pred eeeeeeCCCCCEEEEEEEEEEeCCC
Q 034293 67 VDCQPSGPAGGMLVFVSDVPFDANT 91 (99)
Q Consensus 67 ~D~q~~~~~~~ili~V~G~~~~~~~ 91 (99)
+.|.. .+.|-++|.|.|++-.++.
T Consensus 205 ~k~~~-~phGlV~V~v~GTvH~~~~ 228 (262)
T PF15008_consen 205 VKGRI-SPHGLVLVAVCGTVHRDNT 228 (262)
T ss_pred cceEE-cCCCcEEEEEeeeEecCCc
Confidence 33444 3557899999999987653
No 12
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=96.80 E-value=0.015 Score=36.51 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhHcc-ChhhhhccccCCceEEEc--CcccccHHHHHHHHhcCC
Q 034293 7 AKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE--GQKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 7 g~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~--g~~~~G~~~I~~~l~~l~ 56 (99)
-+..+++||..+++ +.+.+..+|.++..+.+. +.++.|.++|.+.+..+.
T Consensus 5 ~~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~ 57 (122)
T cd00781 5 MKAAVQRYVEAVNAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSL 57 (122)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHh
Confidence 35679999999985 789999999999998763 346999999999998876
No 13
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=96.69 E-value=0.02 Score=34.37 Aligned_cols=80 Identities=21% Similarity=0.177 Sum_probs=57.3
Q ss_pred HHHHHHHHhHcc-ChhhhhccccCCceEEEcCcccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCCCCCEEEEEEEEEE
Q 034293 9 AFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSDVPF 87 (99)
Q Consensus 9 ~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~ili~V~G~~~ 87 (99)
+..++|...+.+ +.+.+.++|.|+..+...+....|.+++.+.+.+-+......++.....++. ++..++.....+.
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~--gd~a~~~~~~~~~ 80 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGPGGTILGKEAILAAFKSGFARFSSIKFEDVEVRVL--GDTAVVRGRWTFT 80 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTSEEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEE--TTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCCCEeCHHHHHHHHhhccCCCceEEEEEEEEEEE--CCEEEEEEEEEEE
Confidence 567888888875 6899999999999999877766799999999987443344555666666664 4455555555555
Q ss_pred eCC
Q 034293 88 DAN 90 (99)
Q Consensus 88 ~~~ 90 (99)
...
T Consensus 81 ~~~ 83 (107)
T PF14534_consen 81 WRG 83 (107)
T ss_dssp ETT
T ss_pred Eec
Confidence 543
No 14
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=96.51 E-value=0.04 Score=34.00 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=55.8
Q ss_pred HHHHHHHHHhHcc-ChhhhhccccCCceEEEcC--cccccHHHHHHHHhc-CC-CCceeEEEEEeeeeeeCCCCCEEEEE
Q 034293 8 KAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG--QKIQGSQNIVAKLTS-LP-FQQCQHSITTVDCQPSGPAGGMLVFV 82 (99)
Q Consensus 8 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g--~~~~G~~~I~~~l~~-l~-~~~~~~~i~s~D~q~~~~~~~ili~V 82 (99)
++++++|++.+.+ +.+.+..+|.++..+...+ ..+.|.++|.+.+.. +. +......+..+..+.. ++.+++..
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~a~~~~ 79 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVS--GDVAVVTG 79 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEE--TTEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEEC--CCEEEEEE
Confidence 4688999999875 6799999999998888744 467899999888865 21 1366667776666652 35555555
Q ss_pred EEEEEe
Q 034293 83 SDVPFD 88 (99)
Q Consensus 83 ~G~~~~ 88 (99)
.+.+..
T Consensus 80 ~~~~~~ 85 (121)
T PF13474_consen 80 EFRLRF 85 (121)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 565554
No 15
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=95.41 E-value=0.075 Score=33.47 Aligned_cols=57 Identities=12% Similarity=0.273 Sum_probs=41.3
Q ss_pred HHHHHHHhHcc-ChhhhhccccCCceEEEcC--cccccHHHHHHHHhcCC--CCceeEEEEE
Q 034293 10 FVEHYYTTFDA-NRTGLANLYQEGSMLTFEG--QKIQGSQNIVAKLTSLP--FQQCQHSITT 66 (99)
Q Consensus 10 Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g--~~~~G~~~I~~~l~~l~--~~~~~~~i~s 66 (99)
-++.||+.+++ +.+.+.++|.++..+...+ .+..|.++|.+.+..+. +...+++|..
T Consensus 3 iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~ 64 (129)
T TIGR02096 3 LAQHWIEAFNRGDMDAVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFPDLLVDVVV 64 (129)
T ss_pred HHHHHHHHHHCCCHHHHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCchhhceeEE
Confidence 47889999986 7899999999998877643 35678999988775432 1144555443
No 16
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=94.04 E-value=0.66 Score=30.59 Aligned_cols=87 Identities=9% Similarity=-0.023 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhHccChhhhhccccCC-ceEEE--cCcccccHHHHHHHHhcCCCCce---eEEEEEeeeeeeCCCCC
Q 034293 4 DSVAKAFVEHYYTTFDANRTGLANLYQEG-SMLTF--EGQKIQGSQNIVAKLTSLPFQQC---QHSITTVDCQPSGPAGG 77 (99)
Q Consensus 4 ~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~-S~l~~--~g~~~~G~~~I~~~l~~l~~~~~---~~~i~s~D~q~~~~~~~ 77 (99)
++|+..|-++==..-..+++...++|.++ +.|.+ -|+.+.|.+.|..+|....-++. +..|..--.|-. .++.
T Consensus 3 ~eI~~l~~~w~~ai~tgD~~~~~~ly~~d~av~~Pt~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~l-g~~~ 81 (128)
T PF08332_consen 3 QEIAALFDRWNDAIQTGDPETYAKLYAPDVAVFEPTVSNQLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLL-GDNA 81 (128)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHEEEEEEEEEGGGTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEE-STTE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHhhhcCCCeeEeccccCCceecChHHHHHHHhcccccCCCceeeEecCCeEEEc-CCCE
Confidence 45666655444444446899999999999 88877 47899999999999884321222 223444444442 3445
Q ss_pred EEEEEEEEEEeCCC
Q 034293 78 MLVFVSDVPFDANT 91 (99)
Q Consensus 78 ili~V~G~~~~~~~ 91 (99)
.++.=.-.+++.+.
T Consensus 82 Ai~~gvy~f~~~d~ 95 (128)
T PF08332_consen 82 AIDAGVYTFQFVDK 95 (128)
T ss_dssp EEEEEEEEEEEEST
T ss_pred EEEeeEEEEEeecC
Confidence 55544444555433
No 17
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=93.87 E-value=0.18 Score=31.35 Aligned_cols=67 Identities=21% Similarity=0.393 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCc---ccccHHHHHHHHhcC--CCCceeEEEEEeeeee
Q 034293 5 SVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ---KIQGSQNIVAKLTSL--PFQQCQHSITTVDCQP 71 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~---~~~G~~~I~~~l~~l--~~~~~~~~i~s~D~q~ 71 (99)
.....++..|...+|. +.+.+..+|.+++.+.+.+- .+.|.++|.+.+... +...+.|.+.......
T Consensus 7 ~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~ 79 (127)
T PF13577_consen 7 AAIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDV 79 (127)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEE
Confidence 3456788899999985 67999999999999999874 799999999998774 2336677666555443
No 18
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=90.20 E-value=1.5 Score=32.07 Aligned_cols=51 Identities=18% Similarity=0.373 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcC--------cccccHHHHHHHHhcCC
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG--------QKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g--------~~~~G~~~I~~~l~~l~ 56 (99)
...+.|+.|+..+.+ +.+.|..++.++..+..+| .++.|.++|..+|..+.
T Consensus 172 ~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~ 231 (293)
T PRK09636 172 EGAELVEAFFAALASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLA 231 (293)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHh
Confidence 356789999999985 8899999999999998766 24789999999997764
No 19
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=85.49 E-value=3.5 Score=30.20 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc--CcccccHHHHHHHHhcC
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE--GQKIQGSQNIVAKLTSL 55 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~--g~~~~G~~~I~~~l~~l 55 (99)
....-+++||..+++ +.+.|..++.++..+... +.++.|.++|..++..+
T Consensus 205 ~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~ 257 (324)
T TIGR02960 205 EEQDLLERYIAAFESYDLDALTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTV 257 (324)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHh
Confidence 345779999999985 789999999999988874 36799999999999987
No 20
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=81.81 E-value=3.1 Score=30.84 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCc--ccccHHHHHHHHhcC
Q 034293 5 SVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ--KIQGSQNIVAKLTSL 55 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~--~~~G~~~I~~~l~~l 55 (99)
..-.+.|+.||..+++ +.+.|..++.++..+.+.+. ++.|.+++.+++..+
T Consensus 214 ~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~ 267 (339)
T PRK08241 214 PEERALLARYVAAFEAYDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQ 267 (339)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhh
Confidence 3456779999999985 78999999999988777543 499999999999886
No 21
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=81.29 E-value=8.4 Score=23.99 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=39.4
Q ss_pred HHHHHhHcc-ChhhhhccccCCceEEEcC-cccccHHHHHHHHhcCC--CCceeEEEEEeee
Q 034293 12 EHYYTTFDA-NRTGLANLYQEGSMLTFEG-QKIQGSQNIVAKLTSLP--FQQCQHSITTVDC 69 (99)
Q Consensus 12 ~~YY~~l~~-~r~~L~~fY~~~S~l~~~g-~~~~G~~~I~~~l~~l~--~~~~~~~i~s~D~ 69 (99)
+.|.+.+++ +.+.+.++|+++......+ ....|.+++.+.+..+- |+..++.|..+=+
T Consensus 5 ~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~ 66 (126)
T PF07366_consen 5 RFYEEVWNRGDLDALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRAAFPDLRFEIEDVVA 66 (126)
T ss_dssp HHHHHHHHTT-GCHHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEE
T ss_pred HHHHHHHhCCCHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEE
Confidence 455566675 6899999999998776655 57788888776665422 3377776665443
No 22
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=73.30 E-value=2.9 Score=28.09 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=29.0
Q ss_pred hHc-cChhhhhccccCCceEEEcCcccccHHHHHHHHhc
Q 034293 17 TFD-ANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTS 54 (99)
Q Consensus 17 ~l~-~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~ 54 (99)
..+ .+|+.+..-|.++|...--..-+.|.++|.++|..
T Consensus 22 aWNsrdP~~ValaYT~Ds~WRNR~eF~~GR~~I~~FLtr 60 (143)
T PF07080_consen 22 AWNSRDPEKVALAYTPDSVWRNRDEFLTGREEIVAFLTR 60 (143)
T ss_dssp HHTTT-HHHHHTTEEEEEEEEETTEEE-SHHHHHHHHHH
T ss_pred ccccCChhHheeccCCCCcccCcccccCcHHHHHHHHHH
Confidence 444 37999999999999865455678999999998864
No 23
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=62.44 E-value=30 Score=25.09 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhHc-cChhhhhccccCCceEEEcC--------cccccHHHHHHHHhcCCC---CceeEEEEEeeeee
Q 034293 7 AKAFVEHYYTTFD-ANRTGLANLYQEGSMLTFEG--------QKIQGSQNIVAKLTSLPF---QQCQHSITTVDCQP 71 (99)
Q Consensus 7 g~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~~g--------~~~~G~~~I~~~l~~l~~---~~~~~~i~s~D~q~ 71 (99)
....+..|-..+. .+.+.|..+-.++..+.-+| +++.|.+.|..+|..+.- .........++.+|
T Consensus 166 ~~~~~~~f~~a~~~gD~~~l~~lL~~dv~~~~dggg~~~~~~~p~~G~~~v~~~~~~~~~~~~~~~~~~~~~vnG~p 242 (281)
T TIGR02957 166 SRQLLERFVEAAQTGDLDGLLELLAEDVVLYGDGGGKVRAALRPIYGADRVARFFFGLVRRLGPGGRVDPVDVNGQP 242 (281)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhceEEEecCCCcCCCCCcccccHHHHHHHHHHHhcccCCCceEEEEEECCCc
Confidence 4578899998887 47899999999999999765 368899999999876531 12344566677776
No 24
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=62.41 E-value=35 Score=21.13 Aligned_cols=66 Identities=20% Similarity=0.316 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhHc-cChhhhhccccCCceEEEc--Cc-ccccHHHHHHHHhcC-----CCCceeEEEEEeeeee
Q 034293 6 VAKAFVEHYYTTFD-ANRTGLANLYQEGSMLTFE--GQ-KIQGSQNIVAKLTSL-----PFQQCQHSITTVDCQP 71 (99)
Q Consensus 6 ig~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~~--g~-~~~G~~~I~~~l~~l-----~~~~~~~~i~s~D~q~ 71 (99)
.-.+-|+.|++.+. .+.+.|.+.++|++.+..- |. .....++..+.+.+- +......+|.++|...
T Consensus 5 ~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g 79 (116)
T PF12893_consen 5 AIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDG 79 (116)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEEC
Confidence 34566888999987 5889999999999987763 33 345677777777652 3345667788887644
No 25
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=61.69 E-value=31 Score=23.03 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHhHccChhhhhccccCCceEEE--cCcccccHHHHHHHHhc
Q 034293 3 PDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTF--EGQKIQGSQNIVAKLTS 54 (99)
Q Consensus 3 ~~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~--~g~~~~G~~~I~~~l~~ 54 (99)
..+||..|=+|-=.+.-.+|.++...|.+++.|.= -.++-..+.+|.++|..
T Consensus 36 ~~~vAaLFdrWN~~L~TGdP~kV~anyApDaVLLPT~Sn~vR~s~~ei~DYF~~ 89 (156)
T COG4875 36 EREVAALFDRWNAALTTGDPNKVAANYAPDAVLLPTMSNQVRSSRSEILDYFSH 89 (156)
T ss_pred HHHHHHHHHHHHhhhhcCChHHHHhhcCCceEeecccccccccCHHHHHHHHHH
Confidence 35788888888777777899999999999998864 23445567888887765
No 26
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=60.24 E-value=35 Score=22.83 Aligned_cols=72 Identities=14% Similarity=0.215 Sum_probs=45.3
Q ss_pred HhHc-cChhhhhccccCCceEEE-cCcccccHHHHHHHHhcCC-CCceeEEEEEeeeeeeCCCCCEEEEEEEEEEeC
Q 034293 16 TTFD-ANRTGLANLYQEGSMLTF-EGQKIQGSQNIVAKLTSLP-FQQCQHSITTVDCQPSGPAGGMLVFVSDVPFDA 89 (99)
Q Consensus 16 ~~l~-~~r~~L~~fY~~~S~l~~-~g~~~~G~~~I~~~l~~l~-~~~~~~~i~s~D~q~~~~~~~ili~V~G~~~~~ 89 (99)
..++ ++-+.+..||.++..+.- +|.++.|.++|.+.|+..- .....++.+-.+-|-+ . .|=+..++|.....
T Consensus 21 ~Av~a~D~~av~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~-~-~GD~a~~~~~~~~~ 95 (137)
T COG4319 21 AAVRAKDADAVADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVH-E-SGDVAFVTALLLLT 95 (137)
T ss_pred HHHhcccHHHHHHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeee-c-cCCEEEEEEeeeee
Confidence 3444 577889999999987765 5899999999999998633 1123344455555532 1 12223455555443
No 27
>cd03829 Sina Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-medi
Probab=55.08 E-value=25 Score=23.28 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=32.9
Q ss_pred HHHHHhHc--cChhhhhcc-c-----cCCceEEEcCcccccHHHHHHHHhcCC
Q 034293 12 EHYYTTFD--ANRTGLANL-Y-----QEGSMLTFEGQKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 12 ~~YY~~l~--~~r~~L~~f-Y-----~~~S~l~~~g~~~~G~~~I~~~l~~l~ 56 (99)
++||..+. .++.+..+| | .+.-.|+|+|.|-+=.+.+.+.+.+-.
T Consensus 49 ~~y~A~~~~iG~~~eA~nf~Y~Lel~~n~RkL~we~~PRSIrds~~~~~~~~D 101 (127)
T cd03829 49 QQFFAFVQLIGTEKQAENFTYRLELNGNRRRLTWEATPRSIREGHASVIDNSD 101 (127)
T ss_pred HHHHHHHHHHcCHhHHhcceEEEEEcCCCcEEEeecCCccHHHhhHHHhhcCc
Confidence 67887776 556666655 5 677899999999887777777666543
No 28
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=54.30 E-value=60 Score=21.31 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCc------ccccHHHHHHHHhcCC
Q 034293 7 AKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ------KIQGSQNIVAKLTSLP 56 (99)
Q Consensus 7 g~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~------~~~G~~~I~~~l~~l~ 56 (99)
+..-|+.||..+.+ +.+.+..++.++-...+.|. ...|.+.+...+..+|
T Consensus 6 ~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~ 62 (133)
T COG3631 6 NTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLP 62 (133)
T ss_pred hhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhCh
Confidence 45678999999985 78999999999998888664 2346777788888877
No 29
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.16 E-value=80 Score=20.78 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=35.8
Q ss_pred HHHHHHHHHHH-hHc-cChhhhhccccCCceEEEcCcccccHHHHHHHHhcC
Q 034293 6 VAKAFVEHYYT-TFD-ANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSL 55 (99)
Q Consensus 6 ig~~Fv~~YY~-~l~-~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l 55 (99)
+-.+.+-++|. .|+ ..+++-.++|. ++.+.||-....|.+.+.++|...
T Consensus 6 ~N~~~v~~~y~~~~~~g~veka~a~~v-d~YiQHnp~vpdGk~~fv~fFt~f 56 (129)
T COG4922 6 ANKQVVIQFYRTLFEAGEVEKADAYLV-DRYIQHNPMVPDGKDGFVRFFTEF 56 (129)
T ss_pred hhHHHHHHHHHHHHHCCCHHHhhhhhh-hHHHhcCCCCCCchHHHHHHHHHH
Confidence 33456667774 455 35677777777 888899999999999998777653
No 30
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=46.37 E-value=81 Score=20.56 Aligned_cols=84 Identities=19% Similarity=0.290 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHhHcc-C-hhhhhccccCCceEEEcC-cccccHHHHHHHHhcCC--CCceeEEEEEeeeeee-----
Q 034293 3 PDSVAKAFVEHYYTTFDA-N-RTGLANLYQEGSMLTFEG-QKIQGSQNIVAKLTSLP--FQQCQHSITTVDCQPS----- 72 (99)
Q Consensus 3 ~~~ig~~Fv~~YY~~l~~-~-r~~L~~fY~~~S~l~~~g-~~~~G~~~I~~~l~~l~--~~~~~~~i~s~D~q~~----- 72 (99)
|.++-+.|++ .|.. + ...+..+..+++...--+ .++.|.++|.+.|..+. +.....+|..+=+...
T Consensus 3 ~~~vV~~F~~----a~~~~D~~~a~~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~~~~~~~~e~~i~~iaadg~~VltE 78 (125)
T PF07858_consen 3 PEEVVRAFLA----ALEDRDVDAALASLFDDDAVYHNVPLPPIRGRDAIRAFLRGFLDSLSGFEFDIHRIAADGDVVLTE 78 (125)
T ss_dssp HHHHHHHHHH----HHHHT-HHHHHHHCEECC-EEEETTTEEEESHHHHHHHHHCCHCCCEEEEEEEEEEEEETTEEEEE
T ss_pred hHHHHHHHHH----HHHcCCHHHHHHHhcCCCcEEEeCCCCCcccHHHHHHHHHHHhcccceeEEEEEEEeecCCEEEEE
Confidence 4455555554 4443 3 244565666665554334 36899999999998873 2333444443322110
Q ss_pred ------CCCCC--EEEEEEEEEEeCC
Q 034293 73 ------GPAGG--MLVFVSDVPFDAN 90 (99)
Q Consensus 73 ------~~~~~--ili~V~G~~~~~~ 90 (99)
..+|+ +-+-|+|.+...+
T Consensus 79 R~D~l~~~dG~~~~~~~V~GvfEv~d 104 (125)
T PF07858_consen 79 RTDVLRFADGPLRIQFPVCGVFEVRD 104 (125)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEET
T ss_pred eEeeeeeecCCeEEEEEEEEEEEEEC
Confidence 02342 4445888877655
No 31
>smart00593 RUN domain involved in Ras-like GTPase signaling.
Probab=46.33 E-value=22 Score=20.04 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=32.0
Q ss_pred HHHHHHHHHhHccChhhhhccccCCceEEEcCcccccHHHHHHHHhcCC
Q 034293 8 KAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 8 ~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~ 56 (99)
+.-+..|.+.+..+.+-+.++|.+.|.+.- -.+.+.+...+..|.
T Consensus 11 e~~L~~~l~~l~~~~~~~~~~Y~~~A~l~~----~~~~~~l~~~L~~L~ 55 (64)
T smart00593 11 EKLLSSWLNLLLSDEELLSKYYEPWAFLRD----PEEGEQLLGLLVGLS 55 (64)
T ss_pred HhHHHHHHHHHHhChHHHHHhCCCCceeeC----hhHHHHHHHHHhCcc
Confidence 445678888888889999999999998842 224445555555554
No 32
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=45.23 E-value=9.2 Score=26.78 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=20.8
Q ss_pred HHHHHHHHHHH-----hHccChhhhhccccCCc
Q 034293 6 VAKAFVEHYYT-----TFDANRTGLANLYQEGS 33 (99)
Q Consensus 6 ig~~Fv~~YY~-----~l~~~r~~L~~fY~~~S 33 (99)
-++.|+..||+ ..+++.+.|.+||..+.
T Consensus 2 fa~~Fv~~Y~t~~~~~~~~~r~~~L~~y~~~~~ 34 (232)
T PF12642_consen 2 FAQDFVKEYLTKSDDEAPEEREARLAPYLTSDL 34 (232)
T ss_dssp HHHHHHHHHT--B-TTGHHHHHHHHTTTS-HHH
T ss_pred HHHHHHHHHcCCCCccChHHHHHHHHHHhcccc
Confidence 47899999999 66667889999995543
No 33
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=43.09 E-value=31 Score=17.96 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHhHcc
Q 034293 3 PDSVAKAFVEHYYTTFDA 20 (99)
Q Consensus 3 ~~~ig~~Fv~~YY~~l~~ 20 (99)
.+.-|++|+..||..|--
T Consensus 5 vd~rAe~FI~~f~~qlrl 22 (38)
T PF05553_consen 5 VDRRAEEFIAKFREQLRL 22 (38)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346799999999998863
No 34
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=42.98 E-value=20 Score=23.00 Aligned_cols=15 Identities=27% Similarity=0.698 Sum_probs=13.0
Q ss_pred HHHHHHHHHhHccCh
Q 034293 8 KAFVEHYYTTFDANR 22 (99)
Q Consensus 8 ~~Fv~~YY~~l~~~r 22 (99)
-.||+.||..|+..|
T Consensus 49 v~fvR~fy~ef~tsP 63 (111)
T COG2920 49 VRFVREFYEEFNTSP 63 (111)
T ss_pred HHHHHHHHHHHCCCc
Confidence 469999999999875
No 35
>PF02759 RUN: RUN domain; InterPro: IPR004012 This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families. They could therefore play important roles in multiple Ras-like GTPase signalling pathways.; PDB: 3CWZ_B 2CXF_A 2DWK_A 2DWG_A 2CXL_A.
Probab=42.07 E-value=18 Score=22.68 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=19.6
Q ss_pred HHHHHhHccChhhhhccccCCceE
Q 034293 12 EHYYTTFDANRTGLANLYQEGSML 35 (99)
Q Consensus 12 ~~YY~~l~~~r~~L~~fY~~~S~l 35 (99)
..|...+-.+++-+.+||.+.|.|
T Consensus 83 ~~~l~~l~~~~~~l~~~Y~~~A~l 106 (133)
T PF02759_consen 83 SSWLQLLLSDPKLLRKYYEPWAFL 106 (133)
T ss_dssp HHHHHHHCTTHHHHCCCB-TTSCT
T ss_pred HHHHHHHHhcchHHcCccCCccee
Confidence 467778888999999999999887
No 36
>PF15601 Imm42: Immunity protein 42
Probab=40.68 E-value=8.4 Score=25.68 Aligned_cols=64 Identities=17% Similarity=0.301 Sum_probs=40.7
Q ss_pred HHHHHHHHHhHccC----------hhhhhccccCCceEEEcC--cccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCC
Q 034293 8 KAFVEHYYTTFDAN----------RTGLANLYQEGSMLTFEG--QKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGP 74 (99)
Q Consensus 8 ~~Fv~~YY~~l~~~----------r~~L~~fY~~~S~l~~~g--~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~ 74 (99)
..|+..|++++... |-=+.++|...- .++. ....=+++|++.|..+|-..+.-.|..++.|| ++
T Consensus 15 ~dfl~sFFsti~~~lE~~~wGskfP~Lm~~LY~g~L--~~~~~~~A~~eL~~I~~~l~~~~p~~ViWD~~dl~~~p-pW 90 (134)
T PF15601_consen 15 PDFLHSFFSTISYRLENEGWGSKFPLLMNELYRGYL--RYEELEKALKELEEIRKELKKFPPSEVIWDIEDLSKQP-PW 90 (134)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcchHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHHhcCChhhheechhhcccCC-CC
Confidence 35777787777532 333456665431 1221 23455789999999999555555788888898 55
No 37
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=35.63 E-value=77 Score=24.91 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCCceeEEEEEeeeeeeCCCCCEEEEEEEEEE
Q 034293 47 NIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSDVPF 87 (99)
Q Consensus 47 ~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~ili~V~G~~~ 87 (99)
.+.++........++..|.+.| .+ ..+++.++|+|+-.
T Consensus 236 ~v~~~a~~~~~~~v~v~iNt~D-~~--~~~~~YLTvtGTSA 273 (396)
T PF01941_consen 236 EVEDYAAKYTDRDVEVHINTAD-DP--EEGGVYLTVTGTSA 273 (396)
T ss_pred HHHHHHHHhcCCceEEEEECCC-CC--CCCcEEEEeceeec
Confidence 4444555555667888899999 22 46889999999853
No 38
>PF07341 DUF1473: Protein of unknown function (DUF1473); InterPro: IPR009941 This entry represents a family of hypothetical proteins of around 150 residues in length found in Borrelia species. The function of this family is unknown.
Probab=35.52 E-value=21 Score=24.25 Aligned_cols=20 Identities=20% Similarity=0.587 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhHccChhh
Q 034293 5 SVAKAFVEHYYTTFDANRTG 24 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~~r~~ 24 (99)
.|...|+..||..|+++|+-
T Consensus 56 MIs~~FlDEFY~ILn~nR~y 75 (163)
T PF07341_consen 56 MISPGFLDEFYEILNQNREY 75 (163)
T ss_pred HcCHhHHHHHHHHHhhhHHH
Confidence 47789999999999998864
No 39
>COG5073 VID24 Vacuolar import and degradation protein [Intracellular trafficking and secretion]
Probab=35.20 E-value=22 Score=26.18 Aligned_cols=70 Identities=23% Similarity=0.238 Sum_probs=45.6
Q ss_pred HHHhHccChhhhhccccCCceEEEcCcccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCCCCCEEEEEEEEEEeCC
Q 034293 14 YYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSDVPFDAN 90 (99)
Q Consensus 14 YY~~l~~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~ili~V~G~~~~~~ 90 (99)
||..-.+++.-+.+-|...+.+.++|-.+.|.+ +...+.=.+...|.++|-+- .+..-+-+++|.+.+.+
T Consensus 57 ~~~~~~kn~~~~~~s~~~~~~~Lr~G~qF~G~Q-----is~~~~~~v~v~i~~Vdl~~--kd~~sl~~l~G~l~i~~ 126 (272)
T COG5073 57 YYMIRHKNKRRLFSSYTRRSGFLRNGAQFGGVQ-----ISGYPPLTVEVNIDTVDLPK--KDDYSLPHLCGTLNIQN 126 (272)
T ss_pred cceecccCceEeeeeccchhhhccCccccccEe-----ccCCcceEEEEEEEEEeccc--cccccccceeeEEEEec
Confidence 444444555566666666777777888888876 45566335667788999765 23333377888877654
No 40
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=33.09 E-value=1.5e+02 Score=19.90 Aligned_cols=42 Identities=14% Similarity=0.025 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCCceeEEEEEeeeeeeCCCCCEEEEEEEEEEe
Q 034293 45 SQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSDVPFD 88 (99)
Q Consensus 45 ~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~ili~V~G~~~~ 88 (99)
.+.|.+++.+.|-..-+.-| .-|+|. ..+.+..+++....+.
T Consensus 4 ~~~I~~fi~~~~~~~yki~I-GTDSQ~-~~~~T~FvTaIvihR~ 45 (144)
T PF04308_consen 4 FEDIKEFIEQDPDSNYKIII-GTDSQV-KGDETCFVTAIVIHRE 45 (144)
T ss_pred HHHHHHHHHhCCCCCeEEEE-ecCCCc-CCCceEEEEEEEEEEe
Confidence 46889999998833333334 459999 3444555544444443
No 41
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=31.54 E-value=19 Score=30.23 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhHccChhhhhccccCCceEEEcCcccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCCCCCEEEEEEE
Q 034293 5 SVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSD 84 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~ili~V~G 84 (99)
.++.....+||..+----..++++-.+ |.++...-...|.-.+-.+|. .|+|..+++-- =|-|+.++|
T Consensus 74 ~la~~l~~~~~r~~p~m~~av~~~l~d-----~~~~~~~~~~~~~v~f~nlp~---~~~irdlra~~----iG~Lv~isG 141 (764)
T KOG0480|consen 74 NLATALEENYYRVLPCMCRAVHKVLKD-----WSTNSGALVKKIYVRFYNLPT---RHKIRDLRAAR----IGKLVRISG 141 (764)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHc-----ccccccccceeEEEEEecccc---ccccccccHhh----hcceEEEEE
Confidence 345556666766654333444444333 555554444455555666662 26666666544 346889999
Q ss_pred EEEeCCCCCcccc
Q 034293 85 VPFDANTSGKLLC 97 (99)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (99)
+|.. -++.||.|
T Consensus 142 tVvR-ts~VrPel 153 (764)
T KOG0480|consen 142 TVVR-TSPVRPEL 153 (764)
T ss_pred EEEE-eeccccee
Confidence 9876 45666655
No 42
>KOG4381 consensus RUN domain-containing protein [Signal transduction mechanisms]
Probab=31.43 E-value=31 Score=26.81 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=31.1
Q ss_pred HHHHhHccChhhhhccccCCceEEEc-Cc----ccccHHHHHHHHh
Q 034293 13 HYYTTFDANRTGLANLYQEGSMLTFE-GQ----KIQGSQNIVAKLT 53 (99)
Q Consensus 13 ~YY~~l~~~r~~L~~fY~~~S~l~~~-g~----~~~G~~~I~~~l~ 53 (99)
.|-.++-.+++.+.+||.+.+.+-.+ +. .+.|..+|...|-
T Consensus 133 ~Y~~~~lad~~~~~eFy~~~alm~~e~s~~L~gLl~gLn~i~~~f~ 178 (368)
T KOG4381|consen 133 DYLSTLLADEELLSEFYEPWALMDEEESAILPGLLVGLNAIDFSFC 178 (368)
T ss_pred HHHHHHHHhHHHHHHHhcchHHHhHHHHHHHHHhhcCHHHHHHHhh
Confidence 38888888889999999999998332 12 3567888877775
No 43
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=30.91 E-value=45 Score=16.86 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH
Q 034293 5 SVAKAFVEHYYT 16 (99)
Q Consensus 5 ~ig~~Fv~~YY~ 16 (99)
.=|++||+.|-+
T Consensus 18 ~NAe~FV~~fVQ 29 (33)
T TIGR03687 18 SNAEEFVRGFVQ 29 (33)
T ss_pred HhHHHHHHHHHH
Confidence 347889988865
No 44
>PF12392 DUF3656: Collagenase ; InterPro: IPR020988 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This domain is found in a number of proteins belonging to the MEROPS peptidase family U32. Peptidase family U32 contains endopeptidases, including collagenase, from bacteria.
Probab=28.99 E-value=1.5e+02 Score=18.59 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=24.0
Q ss_pred ccHHHHHHHHhcCCCCceeEEEEEeeeee
Q 034293 43 QGSQNIVAKLTSLPFQQCQHSITTVDCQP 71 (99)
Q Consensus 43 ~G~~~I~~~l~~l~~~~~~~~i~s~D~q~ 71 (99)
...+.|.+.|..++ .+.+.+..++...
T Consensus 66 ~~~e~i~~ql~KlG--~T~F~~~~i~i~~ 92 (122)
T PF12392_consen 66 LDEERIRKQLSKLG--NTPFELENIEIDL 92 (122)
T ss_pred cCHHHHHHHHHhhC--CCcEEEEEEEEEc
Confidence 46899999999999 9999999999874
No 45
>PF07029 CryBP1: CryBP1 protein; InterPro: IPR009751 This family consists of several CryBP1 like proteins from Bacillus thuringiensis and Paenibacillus popilliae. Members of this family are thought to be involved in the overall toxicity of the bacteria to their hosts [,].
Probab=28.66 E-value=1.9e+02 Score=19.88 Aligned_cols=28 Identities=7% Similarity=-0.018 Sum_probs=21.8
Q ss_pred EEEEEeeeeeeCCCCCEEEEEEEEEEeC
Q 034293 62 HSITTVDCQPSGPAGGMLVFVSDVPFDA 89 (99)
Q Consensus 62 ~~i~s~D~q~~~~~~~ili~V~G~~~~~ 89 (99)
..+.+++.+|+..+..=++.++|.+++.
T Consensus 132 V~v~dl~v~p~~e~~c~~vkitG~F~f~ 159 (161)
T PF07029_consen 132 VVVCDLQVKPIQEDDCQFVKITGKFQFH 159 (161)
T ss_pred EEEEEeEEEEcccCCceEEEEEEEEEEE
Confidence 4678888888644566889999999874
No 46
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=28.57 E-value=95 Score=19.30 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=21.2
Q ss_pred ccccHHHHHHHHhcCC-CCceeEEEEEeeeee
Q 034293 41 KIQGSQNIVAKLTSLP-FQQCQHSITTVDCQP 71 (99)
Q Consensus 41 ~~~G~~~I~~~l~~l~-~~~~~~~i~s~D~q~ 71 (99)
.+...++.++.|.+|| |.-.+.+|+-+-.+|
T Consensus 56 dv~s~~eLh~iL~sLPL~p~m~i~VtpL~~HP 87 (90)
T TIGR03221 56 DVESNDELHTLLSGLPLFPYMDIEVTPLARHP 87 (90)
T ss_pred EcCCHHHHHHHHHhCCCCcceEeEEEEccCCC
Confidence 4567899999999999 444444555554444
No 47
>COG3558 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.34 E-value=18 Score=24.07 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=26.8
Q ss_pred ChhhhhccccCCceEEEcCcccccHHHHHHHHhc
Q 034293 21 NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTS 54 (99)
Q Consensus 21 ~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~ 54 (99)
+|.++.--|.++|...--..-+.|.+.|+++|..
T Consensus 29 dp~kv~layt~ds~wrnraef~~gre~i~~fl~r 62 (154)
T COG3558 29 DPAKVALAYTEDSFWRNRAEFFQGREKIQEFLTR 62 (154)
T ss_pred ChhheeeeeccchhhhhHHHHHccHHHHHHHHHh
Confidence 6888888899998754334568999999999864
No 48
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=27.84 E-value=29 Score=17.83 Aligned_cols=14 Identities=21% Similarity=0.712 Sum_probs=10.9
Q ss_pred HHHHHHHHhHccCh
Q 034293 9 AFVEHYYTTFDANR 22 (99)
Q Consensus 9 ~Fv~~YY~~l~~~r 22 (99)
.|...|++.|.+.|
T Consensus 24 ~F~a~yF~~L~~~R 37 (38)
T PF02197_consen 24 QFAADYFEKLEKQR 37 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 68889998887654
No 49
>PF02898 NO_synthase: Nitric oxide synthase, oxygenase domain; InterPro: IPR004030 Nitric oxide synthase (1.14.13.39 from EC) (NOS) enzymes produce nitric oxide (NO) by catalysing a five-electron oxidation of a guanidino nitrogen of L-arginine (L-Arg). Oxidation of L-Arg to L-citrulline occurs via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine as an intermediate. 2 mol of O(2) and 1.5 mol of NADPH are consumed per mole of NO formed []. Arginine-derived NO synthesis has been identified in mammals, fish, birds, invertebrates, plants, and bacteria []. Best studied are mammals, where three distinct genes encode NOS isozymes: neuronal (nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and endothelial (eNOS or NOS-3) []. iNOS and nNOS are soluble and found predominantly in the cytosol, while eNOS is membrane associated. The enzymes exist as homodimers, each monomer consisting of two major domains: an N-terminal oxygenase domain, which belongs to the class of haem-thiolate proteins, and a C-terminal reductase domain, which is homologous to NADPH:P450 reductase (1.6.2.4 from EC). The interdomain linker between the oxygenase and reductase domains contains a calmodulin (CaM)-binding sequence. NOSs are the only enzymes known to simultaneously require five bound cofactors animal NOS isozymes are catalytically self-sufficient. The electron flow in the NO synthase reaction is: NADPH --> FAD --> FMN --> haem --> O(2). eNOS localisation to endothelial membranes is mediated by cotranslational N-terminal myristoylation and post-translational palmitoylation []. The subcellular localisation of nNOS in skeletal muscle is mediated by anchoring of nNOS to dystrophin. nNOS contains an additional N-terminal domain, the PDZ domain []. Some bacteria, like Bacillus halodurans, Bacillus subtilis or Deinococcus radiodurans, contain homologs of NOS oxygenase domain. The pattern is directed against the N-terminal haem binding site. This entry represents the oxygenase domain of NOS.; GO: 0004517 nitric-oxide synthase activity, 0006809 nitric oxide biosynthetic process, 0055114 oxidation-reduction process; PDB: 2FBZ_X 2AMO_A 2AN0_A 1M7V_A 2FC1_A 2FC2_B 1M7Z_A 2AN2_A 2ORS_A 1QW5_B ....
Probab=26.66 E-value=60 Score=25.27 Aligned_cols=17 Identities=29% Similarity=0.739 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhHccC
Q 034293 5 SVAKAFVEHYYTTFDAN 21 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~~ 21 (99)
..|++|+.+||..+...
T Consensus 11 ~~A~~Fi~~~y~e~~~~ 27 (372)
T PF02898_consen 11 EEAKEFIDQYYSELKRS 27 (372)
T ss_dssp HHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 47999999999998753
No 50
>PLN02873 coproporphyrinogen-III oxidase
Probab=26.17 E-value=44 Score=24.93 Aligned_cols=51 Identities=27% Similarity=0.420 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhHccC-------hhhhhccccCCceEEEc-----C----cccccHHHHHHHHhcCC
Q 034293 4 DSVAKAFVEHYYTTFDAN-------RTGLANLYQEGSMLTFE-----G----QKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 4 ~~ig~~Fv~~YY~~l~~~-------r~~L~~fY~~~S~l~~~-----g----~~~~G~~~I~~~l~~l~ 56 (99)
+.+|+.|+.-|-..+.++ ++.-.++|+..-.+-+| | -...| .|...|+|||
T Consensus 177 ~~vg~afl~aY~pIv~rr~~~~~te~er~~Ql~RRGRYvEFNLvyDRGT~FGL~t~g--r~EsILmSLP 243 (274)
T PLN02873 177 TDVANSVVPAYLPIVEKRKDDPFTEEQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGG--RIESILVSLP 243 (274)
T ss_pred HHHHHHHHHHhHHHHHHhCCCCCCHHHHHHHHHhCcceEEEEeeeecCchhhccCCC--CceEEEEcCC
Confidence 469999999999998754 45556778777755554 3 23334 7888899999
No 51
>PRK01151 rps17E 30S ribosomal protein S17e; Validated
Probab=26.06 E-value=78 Score=18.06 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhHccC
Q 034293 4 DSVAKAFVEHYYTTFDAN 21 (99)
Q Consensus 4 ~~ig~~Fv~~YY~~l~~~ 21 (99)
..+|+..++.||..|..+
T Consensus 9 Kr~a~~lieky~~~ft~D 26 (58)
T PRK01151 9 KRTAEELLEKYPDLFTTD 26 (58)
T ss_pred HHHHHHHHHHhHHHhccc
Confidence 468999999999998754
No 52
>PF12057 DUF3538: Domain of unknown function (DUF3538); InterPro: IPR021925 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with PF00240 from PFAM. This domain has a conserved SDL sequence motif.
Probab=25.98 E-value=49 Score=21.67 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=12.9
Q ss_pred HHHHHHHHHhHccCh
Q 034293 8 KAFVEHYYTTFDANR 22 (99)
Q Consensus 8 ~~Fv~~YY~~l~~~r 22 (99)
+-|+++||..|.+++
T Consensus 16 ~Pflery~~iL~~~~ 30 (120)
T PF12057_consen 16 QPFLERYHEILQEDP 30 (120)
T ss_pred hHHHHHHHHHHhcCC
Confidence 469999999998765
No 53
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=25.95 E-value=1e+02 Score=19.09 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=22.5
Q ss_pred ccccHHHHHHHHhcCC-CCceeEEEEEeeeee
Q 034293 41 KIQGSQNIVAKLTSLP-FQQCQHSITTVDCQP 71 (99)
Q Consensus 41 ~~~G~~~I~~~l~~l~-~~~~~~~i~s~D~q~ 71 (99)
.+..-++.++.|.+|| |.-.+.+|+-+-.+|
T Consensus 57 dv~d~~eLh~lL~sLPL~p~m~i~VtpL~~Hp 88 (91)
T PF02426_consen 57 DVEDNDELHELLSSLPLFPYMDIEVTPLARHP 88 (91)
T ss_pred ECCCHHHHHHHHHhCCCccceeeeEEecccCC
Confidence 4567889999999999 444555666665555
No 54
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=25.84 E-value=1.4e+02 Score=17.89 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=36.5
Q ss_pred cCcccccHHHHHHHHhcCCCCceeEEEEEeeeee-eCC-CCCEEEEEEEEEEeCCCC
Q 034293 38 EGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQP-SGP-AGGMLVFVSDVPFDANTS 92 (99)
Q Consensus 38 ~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~-~~~-~~~ili~V~G~~~~~~~~ 92 (99)
.+|...|.+.+.+.|.+-| . .+|.-++|+. ... .......|.|.+..++++
T Consensus 9 ~~Nl~~g~~~~~~~Le~~p--~--~~Vie~gCl~~Cg~C~~~pFAlVnG~~V~A~t~ 61 (78)
T PF07293_consen 9 VSNLASGTDQVYEKLEKDP--D--IDVIEYGCLSYCGPCAKKPFALVNGEIVAAETA 61 (78)
T ss_pred ccCchhhhHHHHHHHhcCC--C--ccEEEcChhhhCcCCCCCccEEECCEEEecCCH
Confidence 4677889999999999877 3 4566677776 111 245778889998877654
No 55
>COG0408 HemF Coproporphyrinogen III oxidase [Coenzyme metabolism]
Probab=25.58 E-value=1.1e+02 Score=23.01 Aligned_cols=51 Identities=31% Similarity=0.567 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhHcc-------ChhhhhccccCCceEEEc-----C----cccccHHHHHHHHhcCC
Q 034293 4 DSVAKAFVEHYYTTFDA-------NRTGLANLYQEGSMLTFE-----G----QKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 4 ~~ig~~Fv~~YY~~l~~-------~r~~L~~fY~~~S~l~~~-----g----~~~~G~~~I~~~l~~l~ 56 (99)
+.+|..|+.-|-....+ .|+.=.++|+..-.+-+| | .+..| .....|+|||
T Consensus 207 qdvG~afl~aY~pIV~~r~~~~~te~er~fQl~RRGRYVEFNLvyDRGT~FGLqTgG--r~ESILmSlP 273 (303)
T COG0408 207 QDVGKAFLPAYLPIVERRKNMPWTEREREFQLYRRGRYVEFNLVYDRGTLFGLQTGG--RVESILMSLP 273 (303)
T ss_pred HHHHHHHhhhhHHHHHHhcCCCCchhHHHHHHHhccceEEEEEEEeccceEeeccCC--chhhhhhcCC
Confidence 56999999999988863 477778899988866665 2 23344 6677799999
No 56
>PF08082 PRO8NT: PRO8NT (NUC069), PrP8 N-terminal domain; InterPro: IPR012591 Pre-mRNA-processing-splicing factor 8 is a central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. It interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes. It is part of the U5 snRNP complex, and of U5.4/6 and U5.U4atac/U6atac snRNP complexes in U2- and U12-dependent spliceosomes, respectively. It is also found in a mRNA splicing-dependent exon junction complex (EJC) with SRRM1 where it interacts with U5 snRNP proteins SNRP116 and WDR57/SPF38 [, ].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=24.80 E-value=98 Score=21.10 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCceeEEEEEeeeeeeCCCCCEEEEEEEEEEeCCCCCc
Q 034293 45 SQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSDVPFDANTSGK 94 (99)
Q Consensus 45 ~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~ili~V~G~~~~~~~~~~ 94 (99)
..+|.+.|+++|..--+ + -.-.||-.|+|.+++-++.++
T Consensus 39 PhAv~kLLEnmPmPWE~--~---------r~VkVlyHitGaiTfVne~pr 77 (152)
T PF08082_consen 39 PHAVLKLLENMPMPWEQ--V---------REVKVLYHITGAITFVNEIPR 77 (152)
T ss_pred hHHHHHHHHcCCcchhh--h---------eeeEEEEeecceEEEeccCcc
Confidence 66999999999922111 0 123478889999998777655
No 57
>PF09053 CagZ: CagZ; InterPro: IPR015139 Helicobacter pylori (Campylobacter pylori) clinical isolates can be classified into two types according to their degree of pathogenicity. Type I strains are associated with a severe disease pathology, express functional VacA (vacuolating cytotoxin A) and contain an insertion of 40 kb of foreign DNA: the cag (cytotoxin-associated gene) pathogenicity island (cagPAI). Type II strains lack the 40 kb insert, cagPAI. The cagPAI may be divided into two regions, cag I and cag II and contain approximately 16 and 15 genes, respectively. The cagPAI encodes a type IV secretion system (T4SS), which delivers CagA into the cytosol of gastric epithelial cells through a rigid needle structure covered by Cag7 or CagY, a VirB10-homologous protein, and CagT, a VirB7-homologous protein, at the base []. The CagA protein is the virulence factor that induces morphological changes in host cells, which may be associated with the development of peptic ulcer and gastric carcinoma []. CagZ is a 23 kDa protein consisting of a single compact L-shaped domain, composed of seven alpha-helices that run antiparallel to each other. 70% of the residues are in alpha-helix conformation and no beta-sheet is present. CagZ is essential for the translocation of the pathogenic protein CagA into host cells []. ; PDB: 1S2X_A.
Probab=23.55 E-value=72 Score=21.58 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHHHhHc
Q 034293 1 MDPDSVAKAFVEHYYTTFD 19 (99)
Q Consensus 1 m~~~~ig~~Fv~~YY~~l~ 19 (99)
=++.++-..|++.|-+.+.
T Consensus 22 ~nanevrdkfiqnyatslk 40 (199)
T PF09053_consen 22 RNANEVRDKFIQNYATSLK 40 (199)
T ss_dssp TTHHHHHHHHHHHHTGGGG
T ss_pred hchHHHHHHHHHHHHhhcc
Confidence 0788999999999988885
No 58
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=23.16 E-value=1.6e+02 Score=23.17 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=24.5
Q ss_pred HHHHHhcCCCCceeEEEEEeeeeeeCCCCCEEEEEEEEEE
Q 034293 48 IVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSDVPF 87 (99)
Q Consensus 48 I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~ili~V~G~~~ 87 (99)
+.++.....-..+...|.+.|- + ..+++.++|+|+-.
T Consensus 237 v~~~a~~~~~~~v~v~iNt~D~-~--~~~~~YLTVtGTSA 273 (399)
T PRK04439 237 VEDLAQKYTDRDVEVHINTADD-P--DEGGVYLTVTGTSA 273 (399)
T ss_pred HHHHHHhhCCCceEEEEeCCCC-C--CCCcEEEEeceeeh
Confidence 3333333343457778888886 3 45889999999853
No 59
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=22.97 E-value=1.8e+02 Score=17.37 Aligned_cols=49 Identities=6% Similarity=0.176 Sum_probs=26.5
Q ss_pred cCCceEEE--cCcccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCCCCCEEEEEE
Q 034293 30 QEGSMLTF--EGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVS 83 (99)
Q Consensus 30 ~~~S~l~~--~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~ili~V~ 83 (99)
+|.+.|+| +|+++.|..+..+ ... +......++-..|...++|..+...
T Consensus 12 kP~A~I~W~k~~~~l~~~~~~~~---~~~--~~~t~~S~L~~~p~~eDdG~~~~C~ 62 (82)
T cd05883 12 KPAATIRWFKGNKELTGKSTVEE---TWS--RMFTVTSQLMLKVTKEDDGVPVICL 62 (82)
T ss_pred CCCCEEEEEECCEECcCccccee---ccC--CCcEEEEEEEEECchhhCCCEEEEE
Confidence 57889998 7778877633211 111 3334455556666324455444433
No 60
>cd00454 Trunc_globin Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct from the three-over-three pattern found in other globins. A subset of these have been demonstrated to form homodimers.
Probab=21.34 E-value=1.3e+02 Score=18.39 Aligned_cols=26 Identities=19% Similarity=0.528 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhHccChhhhhccccCC
Q 034293 6 VAKAFVEHYYTTFDANRTGLANLYQEG 32 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~~r~~L~~fY~~~ 32 (99)
.-..+|..||..+.++|. |..++...
T Consensus 11 ~i~~lv~~FY~~i~~dp~-i~~~F~~~ 36 (116)
T cd00454 11 AIRALVDRFYARVAADPR-LGPIFPAD 36 (116)
T ss_pred HHHHHHHHHHHHHhcChH-HHHhcCCc
Confidence 346789999999988866 88777544
No 61
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=20.91 E-value=81 Score=20.15 Aligned_cols=15 Identities=13% Similarity=0.603 Sum_probs=12.3
Q ss_pred HHHHHHHHHhHccCh
Q 034293 8 KAFVEHYYTTFDANR 22 (99)
Q Consensus 8 ~~Fv~~YY~~l~~~r 22 (99)
-.|+++||..+...|
T Consensus 46 I~~lR~~y~e~~~~P 60 (108)
T TIGR03342 46 INFLRDFYAEYNISP 60 (108)
T ss_pred HHHHHHHHHHHCCCC
Confidence 479999999988665
No 62
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=20.82 E-value=61 Score=18.08 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=19.3
Q ss_pred HHHHHHHHHhHccChhhhhcccc
Q 034293 8 KAFVEHYYTTFDANRTGLANLYQ 30 (99)
Q Consensus 8 ~~Fv~~YY~~l~~~r~~L~~fY~ 30 (99)
..|...|...|.+=+++|.+=+.
T Consensus 12 DqFMeaYc~~L~kykeeL~~p~~ 34 (52)
T PF03791_consen 12 DQFMEAYCDMLVKYKEELQRPFQ 34 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999998888876444
No 63
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=20.78 E-value=63 Score=26.03 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=15.3
Q ss_pred hhccccCCc-eEEEcCcccc
Q 034293 25 LANLYQEGS-MLTFEGQKIQ 43 (99)
Q Consensus 25 L~~fY~~~S-~l~~~g~~~~ 43 (99)
|..+|+|+| .+.|||+++.
T Consensus 369 LtGL~~PqsG~I~ldg~pV~ 388 (546)
T COG4615 369 LTGLYQPQSGEILLDGKPVS 388 (546)
T ss_pred HhcccCCCCCceeECCccCC
Confidence 568899997 8889998654
No 64
>cd00794 NOS_oxygenase_prok Nitric oxide synthase (NOS) prokaryotic oxygenase domain. NOS produces nitric oxide (NO) by catalyzing a five-electron heme-based oxidation of a guanidine nitrogen of L-arginine to L-citrulline via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine (NHA) as an intermediate. Nitric oxide synthases are homodimers. Most prokaryotes produce NO as a byproduct of denitrification, using a completely different set of enzymes than NOS. However, a few prokaryotes also have a NOS, consisting solely of the NOS oxygenase domain. Prokaryotic NOS binds to the substrate L-Arg, zinc, and to the cofactors heme and tetrahydrofolate.
Probab=20.12 E-value=79 Score=24.46 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhHcc
Q 034293 5 SVAKAFVEHYYTTFDA 20 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~ 20 (99)
.-|++|+++||..+..
T Consensus 4 ~eA~~Fi~~~y~e~~~ 19 (353)
T cd00794 4 KEARAFLTNMYEELGE 19 (353)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4589999999999884
Done!