Query 034293
Match_columns 99
No_of_seqs 106 out of 660
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 20:28:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gy7_A Nuclear transport facto 100.0 6.4E-35 2.2E-39 190.6 10.8 98 1-98 3-101 (125)
2 3ujm_A Rasputin; NTF2-like fol 100.0 8.3E-34 2.9E-38 184.2 8.4 96 2-98 2-98 (120)
3 1zo2_A NTF2, nuclear transport 100.0 3E-33 1E-37 183.6 10.7 96 2-98 10-105 (129)
4 1gy6_A Nuclear transport facto 100.0 3.8E-33 1.3E-37 182.6 10.7 96 2-98 6-101 (127)
5 3q90_A RAS GTPase-activating p 100.0 1.5E-32 5.1E-37 182.5 9.6 96 2-98 8-111 (140)
6 3nv0_B NTF2-related export pro 100.0 4.1E-31 1.4E-35 178.3 11.2 94 3-98 33-132 (154)
7 2qiy_A UBP3-associated protein 100.0 1.6E-31 5.5E-36 179.8 9.0 97 2-98 10-124 (154)
8 1jkg_A P15; NTF2-like domain, 100.0 6.4E-31 2.2E-35 174.5 10.9 95 2-98 12-111 (140)
9 1q42_A MTR2, mRNA transport re 99.9 2.2E-24 7.5E-29 148.6 10.0 95 2-98 24-139 (201)
10 1of5_A MRNA export factor MEX6 99.8 2.9E-21 9.8E-26 136.6 6.5 88 3-92 10-142 (221)
11 1q40_B MEX67, mRNA export fact 99.8 1E-20 3.5E-25 133.6 8.8 87 3-91 13-147 (219)
12 1jkg_B TAP; NTF2-like domain, 99.8 1.4E-20 4.9E-25 134.9 9.3 93 3-98 14-146 (250)
13 1of5_B MTR2, YKL186C, mRNA tra 99.8 2.6E-18 8.8E-23 117.1 11.0 91 3-95 15-111 (184)
14 3nv0_A Nuclear RNA export fact 99.6 4.5E-15 1.5E-19 103.8 10.4 84 3-89 12-143 (205)
15 4i4k_A Uncharacterized protein 97.2 0.0023 7.9E-08 41.0 7.9 86 6-92 20-109 (143)
16 3dm8_A Uncharacterized protein 97.2 0.0017 5.7E-08 41.4 7.0 50 7-56 6-64 (143)
17 2gxf_A Hypothetical protein YY 97.1 0.0029 9.8E-08 40.0 7.3 50 7-56 5-56 (142)
18 3hx8_A MLR2180 protein, putati 97.1 0.005 1.7E-07 37.4 8.2 69 3-71 4-75 (129)
19 3cu3_A Domain of unknown funct 97.0 0.0054 1.9E-07 40.0 8.6 85 6-91 17-106 (172)
20 3h3h_A Uncharacterized snoal-l 96.9 0.002 7E-08 39.7 5.7 64 1-67 5-82 (122)
21 3er7_A Uncharacterized NTF2-li 96.8 0.0024 8.3E-08 41.0 5.2 59 9-67 6-72 (131)
22 3mg1_A OCP, orange carotenoid 96.7 0.0055 1.9E-07 45.0 6.8 83 6-90 193-277 (323)
23 3i0y_A Putative polyketide cyc 96.6 0.013 4.4E-07 36.3 7.4 50 7-56 10-61 (140)
24 3f7x_A Putative polyketide cyc 96.5 0.013 4.4E-07 37.7 7.4 50 7-56 22-73 (151)
25 1ohp_A Steroid delta-isomerase 96.5 0.0024 8.1E-08 38.4 3.6 54 2-56 3-59 (125)
26 4h3u_A Hypothetical protein; s 96.4 0.014 4.7E-07 37.5 7.0 48 9-56 29-79 (158)
27 3dxo_A Uncharacterized snoal-l 96.2 0.0028 9.7E-08 39.4 2.5 64 8-71 6-77 (121)
28 3gwr_A Putative calcium/calmod 96.2 0.029 9.9E-07 36.0 7.4 83 7-90 10-97 (144)
29 1oh0_A Steroid delta-isomerase 96.2 0.004 1.4E-07 38.2 3.1 51 5-55 7-60 (131)
30 3en8_A Uncharacterized NTF-2 l 96.1 0.02 6.7E-07 35.9 6.4 55 1-56 2-59 (128)
31 3fh1_A Uncharacterized NTF2-li 96.0 0.023 7.7E-07 35.2 6.3 61 6-66 18-85 (129)
32 1nww_A Limonene-1,2-epoxide hy 96.0 0.011 3.9E-07 37.2 4.8 50 7-56 24-75 (149)
33 3gzr_A Uncharacterized protein 96.0 0.06 2.1E-06 34.5 8.3 66 6-71 7-77 (146)
34 3f14_A Uncharacterized NTF2-li 95.9 0.024 8.3E-07 34.4 5.8 58 9-66 4-65 (112)
35 3rob_A Uncharacterized conserv 95.8 0.0074 2.5E-07 38.8 3.4 51 4-54 16-67 (139)
36 3ff2_A Uncharacterized cystati 95.8 0.019 6.4E-07 34.9 5.1 59 1-66 2-68 (117)
37 1s5a_A Hypothetical protein YE 95.7 0.067 2.3E-06 33.3 7.4 51 6-56 11-68 (150)
38 3d9r_A Ketosteroid isomerase-l 95.6 0.017 5.8E-07 35.4 4.4 51 5-55 11-63 (135)
39 3mso_A Steroid delta-isomerase 95.6 0.011 3.7E-07 38.0 3.6 53 4-56 8-63 (143)
40 2chc_A Protein RV3472; hypothe 95.6 0.03 1E-06 36.2 5.6 66 6-71 15-82 (170)
41 2gex_A SNOL; alpha+beta barrel 95.5 0.12 4.1E-06 32.6 8.3 66 1-67 1-69 (152)
42 3jum_A Phenazine biosynthesis 95.5 0.033 1.1E-06 37.9 5.8 76 8-86 44-128 (185)
43 3rga_A Epoxide hydrolase; NTF2 95.4 0.034 1.2E-06 39.6 5.9 52 5-56 6-60 (283)
44 3bb9_A Putative orphan protein 95.4 0.1 3.4E-06 33.0 7.6 67 5-71 30-100 (148)
45 3f9s_A Putative polyketide cyc 95.4 0.064 2.2E-06 33.6 6.6 67 1-67 2-77 (146)
46 2gey_A ACLR protein; alpha+bet 95.3 0.16 5.4E-06 32.3 8.4 65 1-67 1-68 (158)
47 3f40_A Uncharacterized NTF2-li 95.3 0.023 8E-07 35.0 4.1 56 1-56 2-58 (114)
48 3h51_A Putative calcium/calmod 95.2 0.22 7.4E-06 31.6 8.9 51 5-55 20-73 (156)
49 3b7c_A Uncharacterized protein 95.2 0.27 9.2E-06 30.0 9.4 68 4-71 4-77 (122)
50 1z1s_A Hypothetical protein PA 95.0 0.11 3.7E-06 33.5 7.0 49 8-56 26-81 (163)
51 2bng_A MB2760; epoxide hydrola 95.0 0.34 1.2E-05 30.3 9.9 51 6-56 16-68 (149)
52 3ebt_A Uncharacterized NTF2-li 95.0 0.28 9.6E-06 29.7 8.6 49 8-56 6-63 (132)
53 2k54_A Protein ATU0742; protei 94.9 0.055 1.9E-06 32.9 5.1 49 7-55 5-56 (123)
54 2a15_A Hypothetical protein RV 94.9 0.15 5.2E-06 31.4 7.3 52 5-56 7-68 (139)
55 3fgy_A Uncharacterized NTF2-li 94.8 0.028 9.6E-07 34.6 3.6 55 1-56 2-62 (135)
56 2rfr_A Uncharacterized protein 94.7 0.021 7E-07 36.1 2.8 64 6-69 20-90 (155)
57 3ec9_A Uncharacterized NTF2-li 94.7 0.15 5.3E-06 31.4 6.8 49 8-56 15-70 (140)
58 3f7s_A Uncharacterized NTF2-li 94.6 0.44 1.5E-05 29.4 9.9 68 3-71 6-80 (142)
59 3b8l_A Uncharacterized protein 94.6 0.15 5.3E-06 32.5 6.8 66 5-70 28-100 (163)
60 3dmc_A NTF2-like protein; stru 94.5 0.04 1.4E-06 34.7 3.8 52 5-56 12-68 (134)
61 3a76_A Gamma-hexachlorocyclohe 94.4 0.25 8.4E-06 32.3 7.6 66 6-71 32-102 (176)
62 3rga_A Epoxide hydrolase; NTF2 94.4 0.028 9.4E-07 40.1 3.1 52 5-56 138-192 (283)
63 3ehc_A Snoal-like polyketide c 94.2 0.045 1.5E-06 33.6 3.5 57 8-67 6-65 (128)
64 2r4i_A Uncharacterized protein 94.0 0.53 1.8E-05 27.9 8.1 72 1-72 2-74 (123)
65 1tuh_A BAL32A, hypothetical pr 93.9 0.074 2.5E-06 33.8 4.1 50 6-55 30-85 (156)
66 3f8h_A Putative polyketide cyc 93.7 0.33 1.1E-05 30.9 7.1 47 9-55 22-70 (150)
67 3gzb_A Putative snoal-like pol 93.7 0.14 4.8E-06 33.4 5.1 50 6-55 21-73 (154)
68 2ux0_A Calcium-calmodulin depe 93.5 0.78 2.7E-05 28.3 9.4 66 6-71 14-86 (143)
69 3ff0_A Phenazine biosynthesis 93.4 0.11 3.9E-06 34.5 4.4 80 7-88 21-108 (163)
70 3k0z_A Putative polyketide cyc 93.2 0.42 1.4E-05 30.6 6.9 61 7-67 36-100 (159)
71 3ejv_A Uncharacterized protein 93.0 0.37 1.3E-05 31.8 6.6 68 4-71 25-107 (179)
72 3kkg_A Putative snoal-like pol 93.0 0.23 7.9E-06 31.0 5.3 61 7-67 11-78 (146)
73 3ef8_A Putative scyalone dehyd 92.9 0.096 3.3E-06 33.3 3.4 66 6-71 12-81 (150)
74 3g8z_A Protein of unknown func 92.8 0.088 3E-06 33.4 3.2 49 7-55 22-76 (148)
75 2f99_A Aklanonic acid methyl e 92.5 0.32 1.1E-05 30.8 5.6 61 6-66 12-78 (153)
76 3grd_A Uncharacterized NTF2-su 92.3 0.076 2.6E-06 32.6 2.3 49 8-56 7-62 (134)
77 1sjw_A Nogalonic acid methyl e 92.0 0.39 1.3E-05 29.5 5.4 59 8-66 5-69 (144)
78 3g16_A Uncharacterized protein 91.7 0.24 8.2E-06 32.6 4.3 52 5-56 10-66 (156)
79 3f8x_A Putative delta-5-3-keto 91.3 0.28 9.7E-06 31.7 4.3 51 5-55 20-73 (148)
80 2owp_A Hypothetical protein BX 90.8 1.9 6.5E-05 26.8 7.8 63 9-71 15-80 (129)
81 3cnx_A Uncharacterized protein 90.8 2.4 8E-05 28.0 8.5 79 8-88 15-114 (170)
82 3hk4_A MLR7391 protein; NTF2-l 90.7 1.3 4.5E-05 27.9 7.0 49 8-56 23-77 (136)
83 3g0k_A Putative membrane prote 90.4 0.47 1.6E-05 30.2 4.7 61 5-66 27-91 (148)
84 2rgq_A Domain of unknown funct 90.3 2.1 7.3E-05 26.5 8.6 65 6-71 11-80 (144)
85 1tp6_A Hypothetical protein PA 87.2 3 0.0001 25.7 6.7 76 8-84 13-92 (128)
86 3duk_A NTF2-like protein of un 86.4 2.8 9.6E-05 25.8 6.2 65 7-71 14-84 (125)
87 3lyg_A NTF2-like protein of un 85.8 1.4 4.7E-05 27.9 4.4 47 10-56 7-60 (120)
88 2rcd_A Uncharacterized protein 84.9 4.7 0.00016 24.4 9.9 61 10-71 19-83 (129)
89 3flj_A Uncharacterized protein 84.2 1.1 3.9E-05 29.3 3.7 48 8-55 21-71 (155)
90 3blz_A NTF2-like protein of un 80.8 6 0.00021 24.0 6.0 64 6-69 13-83 (128)
91 2imj_A Hypothetical protein DU 77.4 1.4 4.7E-05 29.3 2.2 44 11-54 23-67 (166)
92 3soy_A NTF2-like superfamily p 71.9 15 0.00052 22.8 9.3 47 8-54 13-62 (145)
93 3fsd_A NTF2-like protein of un 65.0 20 0.00069 21.6 7.8 65 8-72 17-82 (134)
94 3ke7_A Putative ketosteroid is 63.8 6.3 0.00022 24.8 3.1 52 19-71 29-84 (134)
95 2f86_B Hypothetical protein K1 63.0 25 0.00086 22.0 6.8 66 7-72 14-83 (143)
96 4gb5_A Uncharacterized protein 50.7 40 0.0014 20.7 5.3 63 7-69 13-84 (159)
97 2b1x_B Naphthalene dioxygenase 45.9 40 0.0014 21.3 4.8 67 5-71 13-106 (172)
98 4giw_A RUN and SH3 domain-cont 43.8 6.5 0.00022 26.4 0.6 49 10-58 132-184 (198)
99 1mby_A SAK, serine/threonine k 38.0 37 0.0013 20.2 3.3 20 45-66 63-82 (88)
100 3eby_A Beta subunit of A putat 35.3 56 0.0019 20.5 4.2 64 6-69 15-97 (163)
101 2izy_A CAMP-dependent protein 35.2 13 0.00043 19.9 0.8 18 9-26 31-48 (54)
102 1mli_A Muconolactone isomerase 31.0 56 0.0019 19.6 3.3 32 41-72 57-89 (96)
103 1s69_A Cyanoglobin, hemoglobin 29.5 57 0.002 19.5 3.3 25 6-31 13-37 (124)
104 2bmm_A Thermostable hemoglobin 27.8 66 0.0023 19.1 3.4 25 6-31 12-36 (123)
105 1b5f_B Protein (cardosin A); h 27.3 1.6 5.3E-05 25.2 -4.1 17 6-22 62-78 (87)
106 2dwk_A Protein RUFY3; RUN doma 27.1 26 0.00087 23.1 1.4 41 11-56 119-159 (180)
107 2gbw_B Biphenyl 2,3-dioxygenas 26.9 1.2E+02 0.0042 19.1 6.0 67 5-71 14-110 (174)
108 2bkm_A Truncated hemoglobin fr 24.9 68 0.0023 19.3 3.1 24 6-30 15-38 (128)
109 1s2x_A CAG-Z; CAG pathogenicit 24.0 46 0.0016 21.7 2.2 19 1-19 29-47 (206)
110 1ux8_A YJBI protein; oxygen st 22.9 72 0.0025 19.4 2.9 22 8-30 18-39 (132)
111 3aq9_A Group 1 truncated hemog 22.4 1.1E+02 0.0038 18.1 3.7 24 7-31 17-40 (121)
112 1yx3_A Hypothetical protein DS 22.1 48 0.0016 21.1 1.9 15 8-22 70-84 (132)
113 1dlw_A Hemoglobin; oxygen stor 21.7 1E+02 0.0034 18.1 3.3 25 6-31 11-35 (116)
114 1sau_A Sulfite reductase, desu 21.7 50 0.0017 20.5 1.9 15 8-22 54-68 (115)
No 1
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=100.00 E-value=6.4e-35 Score=190.62 Aligned_cols=98 Identities=42% Similarity=0.735 Sum_probs=92.9
Q ss_pred CChHHHHHHHHHHHHHhHccChhhhhccccCCceEEEcCcccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCCCCCEEE
Q 034293 1 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLV 80 (99)
Q Consensus 1 m~~~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~ili 80 (99)
||+++||++||++||+.||++|+.|++||+++|.|+|+|+.+.|+++|.++|.+|||++++|+|.++||||+.+++||+|
T Consensus 3 m~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~~gili 82 (125)
T 1gy7_A 3 LDFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDVLV 82 (125)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETTEEEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTSCEEE
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCcEEEECCcEecCHHHHHHHHHhCCCcceEEEEEEEEEEEecCCCeEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999645689999
Q ss_pred EEEEEEEeCCC-CCccccc
Q 034293 81 FVSDVPFDANT-SGKLLCV 98 (99)
Q Consensus 81 ~V~G~~~~~~~-~~~~~~~ 98 (99)
+|+|.++.+++ +.+.|+|
T Consensus 83 ~V~G~~~~~~~~~~~~F~q 101 (125)
T 1gy7_A 83 MITGDLLIDEEQNPQRFSQ 101 (125)
T ss_dssp EEEEEEEETTCSSCEEEEE
T ss_pred EEEEEEEECCCCCCccEeE
Confidence 99999999988 8888886
No 2
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=100.00 E-value=8.3e-34 Score=184.20 Aligned_cols=96 Identities=24% Similarity=0.423 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHHHhHccChhhhhccccCCceEEE-cCcccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCCCCCEEE
Q 034293 2 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTF-EGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLV 80 (99)
Q Consensus 2 ~~~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~-~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~ili 80 (99)
||++||++||++||+.||++|+.|++||.++|.++| +|+.+.|.++|.++|++|||.+++|+|.++||||+ +++||||
T Consensus 2 s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~~~~~~~~~~G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~-~~~gili 80 (120)
T 3ujm_A 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESKLVVGQREIHNRIQQLNFNDCHAKISQVDAQAT-LGNGVVV 80 (120)
T ss_dssp --CCHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTCCCEESHHHHHHHHHHHCCCSCEEEEEEEEEEEE-GGGEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHhhhecccceEEEcCCcEecCHHHHHHHHHcCCCcceEEEEecccceEc-CCCCEEE
Confidence 689999999999999999999999999999998777 58999999999999999999999999999999996 6789999
Q ss_pred EEEEEEEeCCCCCccccc
Q 034293 81 FVSDVPFDANTSGKLLCV 98 (99)
Q Consensus 81 ~V~G~~~~~~~~~~~~~~ 98 (99)
+|+|.++.++++.+.|+|
T Consensus 81 ~V~G~l~~~~~~~r~F~Q 98 (120)
T 3ujm_A 81 QVTGELSNDGQPMRRFTQ 98 (120)
T ss_dssp EEEEEEESTTCCCEEEEE
T ss_pred EEEEEEEeCCCCCceEEE
Confidence 999999999999988987
No 3
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=100.00 E-value=3e-33 Score=183.59 Aligned_cols=96 Identities=45% Similarity=0.688 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHHHHHhHccChhhhhccccCCceEEEcCcccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCCCCCEEEE
Q 034293 2 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVF 81 (99)
Q Consensus 2 ~~~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~ili~ 81 (99)
++++||++||++||+.||++|+.|++||.++|+|+|+|+.+.|+++|.++|.+||+.+++|+|.++||||+ +++||||+
T Consensus 10 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~-~~~gilI~ 88 (129)
T 1zo2_A 10 QFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWEDTQFQGQANIVNKFNSLNFQRVQFEITRVDCQPS-PNNGSIVF 88 (129)
T ss_dssp THHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTEEEESHHHHHHHHHHHCCSCEEEEEEEEEEEEC-TBSSEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEECCceeccHHHHHHHHHhCCCcceEEEEEEEEEEEe-CCCcEEEE
Confidence 46889999999999999999999999999999999999999999999999999998889999999999996 77899999
Q ss_pred EEEEEEeCCCCCccccc
Q 034293 82 VSDVPFDANTSGKLLCV 98 (99)
Q Consensus 82 V~G~~~~~~~~~~~~~~ 98 (99)
|+|.++.++++.+.|+|
T Consensus 89 V~G~~~~~~~~~~~F~q 105 (129)
T 1zo2_A 89 VTGDVRIDDGQPLKFSQ 105 (129)
T ss_dssp EEEEEEETTCCCEEEEE
T ss_pred EEEEEEECCCCcceEEE
Confidence 99999999999999987
No 4
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=100.00 E-value=3.8e-33 Score=182.63 Aligned_cols=96 Identities=39% Similarity=0.594 Sum_probs=92.3
Q ss_pred ChHHHHHHHHHHHHHhHccChhhhhccccCCceEEEcCcccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCCCCCEEEE
Q 034293 2 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVF 81 (99)
Q Consensus 2 ~~~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~ili~ 81 (99)
++++||++||++||+.||++|+.|++||+++|+|+|+|+.+.|+++|.++|.+||+.+++|+|.++||||+ +++||||+
T Consensus 6 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~d~qp~-~~~~ili~ 84 (127)
T 1gy6_A 6 IWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPT-PDSCIISM 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETTEEEESHHHHHHHHHHCSCSCEEEEEEEEEEEEC-TTSCEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEECCccccCHHHHHHHHHhCCCcceEEEEEEEEEEEe-CCCcEEEE
Confidence 37889999999999999999999999999999999999999999999999999999889999999999996 78999999
Q ss_pred EEEEEEeCCCCCccccc
Q 034293 82 VSDVPFDANTSGKLLCV 98 (99)
Q Consensus 82 V~G~~~~~~~~~~~~~~ 98 (99)
|+|.++.++++.+.|+|
T Consensus 85 V~G~~~~~~~~~~~F~q 101 (127)
T 1gy6_A 85 VVGQLKADEDPIMGFHQ 101 (127)
T ss_dssp EEEEEEETTSCCEEEEE
T ss_pred EEEEEEECCCCcceEeE
Confidence 99999999999999987
No 5
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=99.98 E-value=1.5e-32 Score=182.48 Aligned_cols=96 Identities=25% Similarity=0.421 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHHHHhHccChhhhhccccCCceEEE-----cCc---ccccHHHHHHHHhcCCCCceeEEEEEeeeeeeC
Q 034293 2 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTF-----EGQ---KIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSG 73 (99)
Q Consensus 2 ~~~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~-----~g~---~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~ 73 (99)
++++||++||++||+.||++|+.|++||.++|+|+| ||+ .+.|+++|.++|++||+.+++|+|.++||||+
T Consensus 8 ~~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~tvD~Qps- 86 (140)
T 3q90_A 8 SPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHAT- 86 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEEEEEEEC-
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHhhcccCceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEeEEEEEe-
Confidence 678999999999999999999999999999999999 565 68999999999999999889999999999995
Q ss_pred CCCCEEEEEEEEEEeCCCCCccccc
Q 034293 74 PAGGMLVFVSDVPFDANTSGKLLCV 98 (99)
Q Consensus 74 ~~~~ili~V~G~~~~~~~~~~~~~~ 98 (99)
+++||||+|+|.++.++++++.|+|
T Consensus 87 ~~~gilI~V~G~l~~~~~~~~~F~Q 111 (140)
T 3q90_A 87 LNDGVVVQVMGLLSNNNQALRRFMQ 111 (140)
T ss_dssp GGGCEEEEEEEEEECTTCCCEEEEE
T ss_pred CCCCEEEEEEEEEecCCCCccEEEE
Confidence 7789999999999999999999987
No 6
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.97 E-value=4.1e-31 Score=178.26 Aligned_cols=94 Identities=28% Similarity=0.430 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHhHccChhhhhccccCCceEEEcCcccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCC------CC
Q 034293 3 PDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGP------AG 76 (99)
Q Consensus 3 ~~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~------~~ 76 (99)
+.+||++||++||+.||++|+.|++||.++|.|+|||+.+.|+++|.++|++|| .++|+|.++||||+.. ++
T Consensus 33 a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~ls~~g~~~~G~~~I~~~l~~Lp--~~~h~I~s~D~qp~~~~~~~q~~~ 110 (154)
T 3nv0_B 33 LCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPINGYDSICEFMKALP--STQHDIQSLDAQRLPEGVTGDMSG 110 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTEEEESHHHHHHHHHHSC--CEEEEEEEEEEEECCTTCCGGGTT
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHhcCCcEEEECCeecccHHHHHHHHHhCC--CeEEEEEEEEEEEcCccccCCCCC
Confidence 457999999999999999999999999999999999999999999999999999 6999999999999642 57
Q ss_pred CEEEEEEEEEEeCCCCCccccc
Q 034293 77 GMLVFVSDVPFDANTSGKLLCV 98 (99)
Q Consensus 77 ~ili~V~G~~~~~~~~~~~~~~ 98 (99)
+|+|+|+|.++.++++.+.|+|
T Consensus 111 ~ilI~V~G~l~~~~~~~r~F~Q 132 (154)
T 3nv0_B 111 GMLLNVAGAVTVDGDSKRAFTQ 132 (154)
T ss_dssp CEEEEEEEEEEETTSCCEEEEE
T ss_pred eEEEEEEEEEEECCCCceeEEE
Confidence 9999999999999999998886
No 7
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=99.97 E-value=1.6e-31 Score=179.78 Aligned_cols=97 Identities=22% Similarity=0.349 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHHHHHhHccChhhhhccccCCceEEEc---------------CcccccHHHHHHHHhcC--CCCceeEEE
Q 034293 2 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFE---------------GQKIQGSQNIVAKLTSL--PFQQCQHSI 64 (99)
Q Consensus 2 ~~~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~~---------------g~~~~G~~~I~~~l~~l--~~~~~~~~i 64 (99)
++++||++||++||+.||++|+.|++||+++|+|+|+ |+.+.|+++|.++|.+| ||.+++|+|
T Consensus 10 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~h~I 89 (154)
T 2qiy_A 10 TVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKL 89 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEccccccccccccccccceEeeCHHHHHHHHHhccCCCCceEEEE
Confidence 6789999999999999999999999999999999999 89999999999999999 999999999
Q ss_pred EEeeeeeeCCC-CCEEEEEEEEEEeCCCCCccccc
Q 034293 65 TTVDCQPSGPA-GGMLVFVSDVPFDANTSGKLLCV 98 (99)
Q Consensus 65 ~s~D~q~~~~~-~~ili~V~G~~~~~~~~~~~~~~ 98 (99)
.++||||+..+ +||+|+|+|.++.++++.+.|+|
T Consensus 90 ~s~D~q~~~~~~~~ilI~V~G~~~~~~~~~r~F~q 124 (154)
T 2qiy_A 90 DTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQ 124 (154)
T ss_dssp EEEEEEEESGGGCEEEEEEEEEEEETTCCCEEEEE
T ss_pred EEEEEEEccCCCCEEEEEEEEEEEECCCCCceEEE
Confidence 99999996322 89999999999999999999987
No 8
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=99.97 E-value=6.4e-31 Score=174.46 Aligned_cols=95 Identities=26% Similarity=0.431 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHHHHhHccChhhhhccccCCceEEEcCcccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCC-----CC
Q 034293 2 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGP-----AG 76 (99)
Q Consensus 2 ~~~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~-----~~ 76 (99)
++.++|++||++||+.||++|+.|++||+++|+|+|||+.+.|+++|.++|.+|| .++|+|.++||||+.. ++
T Consensus 12 ~a~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~~~~G~~~I~~~l~~Lp--~~~h~i~s~d~q~~~~~~~~~~~ 89 (140)
T 1jkg_A 12 QACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLP--SSEFQISVVDCQPVHDEATPSQT 89 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTEEEESHHHHHHHHHHSC--CEEEEEEEEEEEECCTTTSTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHhcCCCcEEEECCeeecCHHHHHHHHHhCC--CceeEEEEEEEEEcCCcccCCCC
Confidence 3678999999999999999999999999999999999999999999999999999 5679999999999632 58
Q ss_pred CEEEEEEEEEEeCCCCCccccc
Q 034293 77 GMLVFVSDVPFDANTSGKLLCV 98 (99)
Q Consensus 77 ~ili~V~G~~~~~~~~~~~~~~ 98 (99)
+|+|+|+|.++.++++.+.|+|
T Consensus 90 ~ilI~V~G~~~~~~~~~r~F~q 111 (140)
T 1jkg_A 90 TVLVVICGSVKFEGNKQRDFNQ 111 (140)
T ss_dssp EEEEEEEEEEEETTSCCEEEEE
T ss_pred eEEEEEEEEEEECCCCceeeeE
Confidence 9999999999999999999986
No 9
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=99.91 E-value=2.2e-24 Score=148.55 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=88.6
Q ss_pred ChHHHHHHHHHHHHHhHccChh-----hhh------ccc----cCCceEEEcCccc------ccHHHHHHHHhcCCCCce
Q 034293 2 DPDSVAKAFVEHYYTTFDANRT-----GLA------NLY----QEGSMLTFEGQKI------QGSQNIVAKLTSLPFQQC 60 (99)
Q Consensus 2 ~~~~ig~~Fv~~YY~~l~~~r~-----~L~------~fY----~~~S~l~~~g~~~------~G~~~I~~~l~~l~~~~~ 60 (99)
++.+.|+.|++.||..||+.|. .|. ++| .++|.++|||+++ .|+++|+++|.+|| .+
T Consensus 24 ~~~r~aE~F~K~yyasLD~~r~~~~~~ql~~v~~f~~ly~~~l~~~a~liwNGnp~~~~~~~~gr~~fqk~w~~lP--~S 101 (201)
T 1q42_A 24 DPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIVNGQPIIPSPQEDCKLQFQKKWLQTP--LS 101 (201)
T ss_dssp CGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEETTEECCCCSSCCHHHHHHHHHHTSC--CE
T ss_pred CcchhHHHHHHHHHHHhcccccccchhhccchhHHHHHhccccCCccEEEEcCcccccccccccHHHHHHHHHhCC--Cc
Confidence 6889999999999999999887 777 788 8999999999999 99999999999999 99
Q ss_pred eEEEEEeeeeeeCCCCCEEEEEEEEEEeCCCCCccccc
Q 034293 61 QHSITTVDCQPSGPAGGMLVFVSDVPFDANTSGKLLCV 98 (99)
Q Consensus 61 ~~~i~s~D~q~~~~~~~ili~V~G~~~~~~~~~~~~~~ 98 (99)
+|.++++||||++..++++|.|+|+|+++++++++|=|
T Consensus 102 qHqL~SlDahpIpGq~T~lI~asGkVrFDesgr~~fgQ 139 (201)
T 1q42_A 102 SHQLTSYDGHLIPGTGTFVVHFSAKVRFDQSGRNRLGE 139 (201)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEEEBCSSCCTTSC
T ss_pred ceeeeeeecceeCCCcEEEEEEeEEEEECCCCcCcCCC
Confidence 99999999999876789999999999999999998754
No 10
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.84 E-value=2.9e-21 Score=136.56 Aligned_cols=88 Identities=17% Similarity=0.317 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHhHccChhhhhccccCCceEEEcCc---------------------------------------ccc
Q 034293 3 PDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQ---------------------------------------KIQ 43 (99)
Q Consensus 3 ~~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~~g~---------------------------------------~~~ 43 (99)
...+++.||++||+.+|++|..|..||+++|+|+|++. .+.
T Consensus 10 ~~~~~~~Fv~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~l~~ 89 (221)
T 1of5_A 10 LGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRLSI 89 (221)
T ss_dssp TCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEEECCC--------------------------------------CB
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHhhCcCcEEEEEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhhhcc
Confidence 56799999999999999999999999999999999773 567
Q ss_pred cHHHHHHHHhcCCCCceeEEE------EEeeeeeeCCCCCEEEEEEEEEEeCCCC
Q 034293 44 GSQNIVAKLTSLPFQQCQHSI------TTVDCQPSGPAGGMLVFVSDVPFDANTS 92 (99)
Q Consensus 44 G~~~I~~~l~~l~~~~~~~~i------~s~D~q~~~~~~~ili~V~G~~~~~~~~ 92 (99)
|.++|.++|.+|| +++|.| .++||||.+..++|+|+|+|.+...+.+
T Consensus 90 G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~ 142 (221)
T 1of5_A 90 GQESINSIFKTLP--KTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKP 142 (221)
T ss_dssp HHHHHHHHHHHSC--CEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC---
T ss_pred CHHHHHHHHHhCC--CeeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCc
Confidence 9999999999999 999999 6999999644479999999999987653
No 11
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=99.83 E-value=1e-20 Score=133.57 Aligned_cols=87 Identities=22% Similarity=0.385 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHhHccChhhhhccccCCceEEEcCc------------------------------------------
Q 034293 3 PDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQ------------------------------------------ 40 (99)
Q Consensus 3 ~~~ig~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~~g~------------------------------------------ 40 (99)
...+++.||++||+.+|++|..|..||+++|+|+|.++
T Consensus 13 ~~~~~~~Fl~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~ 92 (219)
T 1q40_B 13 SRNLATNFIANYLKLWDANRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARMAK 92 (219)
T ss_dssp CHHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHhhccccEEEEEecCCCCccccccccccccccchhhhhhhccchhcccchhhhhhh
Confidence 56799999999999999999999999999999999752
Q ss_pred ccccHHHHHHHHhcCCCCceeEEE------EEeeeeeeCCCCCEEEEEEEEEEeCCC
Q 034293 41 KIQGSQNIVAKLTSLPFQQCQHSI------TTVDCQPSGPAGGMLVFVSDVPFDANT 91 (99)
Q Consensus 41 ~~~G~~~I~~~l~~l~~~~~~~~i------~s~D~q~~~~~~~ili~V~G~~~~~~~ 91 (99)
.+.|.++|.++|.+|| +++|.+ .++|||+.+..++|+|+|+|.+.-.+.
T Consensus 93 l~~G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~ 147 (219)
T 1q40_B 93 LSIGQEQIYKSFQQLP--KTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQ 147 (219)
T ss_dssp CEEHHHHHHHHHHTSC--EEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEEC
T ss_pred hccCHHHHHHHHHHCC--CeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCC
Confidence 4669999999999999 999999 699999753358999999999987553
No 12
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=99.83 E-value=1.4e-20 Score=134.91 Aligned_cols=93 Identities=25% Similarity=0.393 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHhHccC-hhhhhccccCCceEEEcCc---------------------------------ccccHHHH
Q 034293 3 PDSVAKAFVEHYYTTFDAN-RTGLANLYQEGSMLTFEGQ---------------------------------KIQGSQNI 48 (99)
Q Consensus 3 ~~~ig~~Fv~~YY~~l~~~-r~~L~~fY~~~S~l~~~g~---------------------------------~~~G~~~I 48 (99)
...+|+.||++||+.||++ |..|.++|+++|+|+|+++ .+.|.++|
T Consensus 14 ~~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~fS~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~~~I 93 (250)
T 1jkg_B 14 LKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNV 93 (250)
T ss_dssp HHHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEEEEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCHHHH
Confidence 3479999999999999998 9999999999999999743 57899999
Q ss_pred HHHHhcCCCCceeEEEE--EeeeeeeCCCCCEEEEEEEEEEeCC----CCCccccc
Q 034293 49 VAKLTSLPFQQCQHSIT--TVDCQPSGPAGGMLVFVSDVPFDAN----TSGKLLCV 98 (99)
Q Consensus 49 ~~~l~~l~~~~~~~~i~--s~D~q~~~~~~~ili~V~G~~~~~~----~~~~~~~~ 98 (99)
.++|.+|| +++|.+. ++|+|+. .+++++|+|+|.++.++ +..+.|++
T Consensus 94 ~~~l~~LP--~t~H~~~s~~vD~~~~-~~~~i~i~V~G~f~e~~~~~~~~~r~F~r 146 (250)
T 1jkg_B 94 VAFLNELP--KTQHDVNSFVVDISAQ-TSTLLCFSVNGVFKEVDGKSRDSLRAFTR 146 (250)
T ss_dssp HHHHTTSC--CEEECGGGCEEEEEEE-CSSCEEEEEEEEEEECSSTTTTCEEEEEE
T ss_pred HHHHHhCC--CeeEeccceEEeeeec-CCCEEEEEEEEEEEECCCCCCCCceeeEE
Confidence 99999999 9999988 8899995 45789999999999876 45556654
No 13
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.78 E-value=2.6e-18 Score=117.13 Aligned_cols=91 Identities=12% Similarity=0.146 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHhHccCh-----hhhhccccCCceEEEcCcccccHHHHHHHHh-cCCCCceeEEEEEeeeeeeCCCC
Q 034293 3 PDSVAKAFVEHYYTTFDANR-----TGLANLYQEGSMLTFEGQKIQGSQNIVAKLT-SLPFQQCQHSITTVDCQPSGPAG 76 (99)
Q Consensus 3 ~~~ig~~Fv~~YY~~l~~~r-----~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~-~l~~~~~~~~i~s~D~q~~~~~~ 76 (99)
..++++.||++||..||..| .-+..|+.+.+.+++||+++.+..+.++.|. ++| .++|+|+++|||-+++.+
T Consensus 15 ~~~aae~FVk~~y~aLd~~r~~~l~~~lssF~p~~~~Ii~NG~p~a~p~~fqeiw~~Q~p--~T~hel~S~D~HVIngsg 92 (184)
T 1of5_B 15 QAQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNCRIIFNATPFAQATVFLQMWQNQVV--QTQHALTGVDYHAIPGSG 92 (184)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-CCEEETTEEESCHHHHHHHHHHHSC--CCEEEEEEEEEEEETTTT
T ss_pred chhHHHHHHHHHHHHhcccccchhhhhhhhcCCCCceEEECCeEcCCHHHHHHHHHhcCC--CceEEEEeEEEEEECCCC
Confidence 34789999999999999988 7788998888999999999999999999998 899 999999999999998888
Q ss_pred CEEEEEEEEEEeCCCCCcc
Q 034293 77 GMLVFVSDVPFDANTSGKL 95 (99)
Q Consensus 77 ~ili~V~G~~~~~~~~~~~ 95 (99)
+|+|+|+|+|+++++.+-.
T Consensus 93 sivv~VsgkVRFdEsgrd~ 111 (184)
T 1of5_B 93 TLICNVNCKVRFDESGRDK 111 (184)
T ss_dssp EEEEEEEEEEECC------
T ss_pred eEEEEEEEEEEECCCCCCC
Confidence 9999999999998776433
No 14
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.61 E-value=4.5e-15 Score=103.76 Aligned_cols=84 Identities=25% Similarity=0.349 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHhHccC-----hhhhhcccc-CCceEEE----c--C-------------------------------
Q 034293 3 PDSVAKAFVEHYYTTFDAN-----RTGLANLYQ-EGSMLTF----E--G------------------------------- 39 (99)
Q Consensus 3 ~~~ig~~Fv~~YY~~l~~~-----r~~L~~fY~-~~S~l~~----~--g------------------------------- 39 (99)
...++..|+++||..+|++ |..|..+|+ ++|.++. . .
T Consensus 12 ~~~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~~~ 91 (205)
T 3nv0_A 12 VRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHNVLNQEYFAAN 91 (205)
T ss_dssp HHHHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCCGGGCCTTTTS
T ss_pred HHHHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhccccccccccHHH
Confidence 3468999999999999987 999999999 6887774 1 0
Q ss_pred ---cccccHHHHHHHHhcCCCCceeEEEEE--eeeeeeCCCCCEEEEEEEEEEeC
Q 034293 40 ---QKIQGSQNIVAKLTSLPFQQCQHSITT--VDCQPSGPAGGMLVFVSDVPFDA 89 (99)
Q Consensus 40 ---~~~~G~~~I~~~l~~l~~~~~~~~i~s--~D~q~~~~~~~ili~V~G~~~~~ 89 (99)
....|.++|.++|.+|| +++|.+.+ +||||. ++++++|+|+|.++..
T Consensus 92 r~~~L~~G~~~I~~~L~~LP--~T~H~~~s~~vD~~p~-~~~~l~i~V~G~f~e~ 143 (205)
T 3nv0_A 92 RASRISHGAMDIVVALSRLP--ATIHLMDTFVVDVFLV-SATLLGFTLHGTFRDG 143 (205)
T ss_dssp SCCSCEEHHHHHHHHHHHSC--CEEECGGGCEEEEEEE-CSSCEEEEEEEEEEET
T ss_pred HHHHHhhCHHHHHHHHHhCC--CeEEecCceEEEEEEe-CCCeEEEEEEEEEEEc
Confidence 02369999999999999 99999986 799996 5578999999999976
No 15
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=97.20 E-value=0.0023 Score=40.97 Aligned_cols=86 Identities=13% Similarity=0.246 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCcccccHHHHHHHHhcC---CCCceeEEEEEeeeeeeCCCCCEEEE
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSL---PFQQCQHSITTVDCQPSGPAGGMLVF 81 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l---~~~~~~~~i~s~D~q~~~~~~~ili~ 81 (99)
.-.+.+..|+..++. +.+.|..+|.+++.+...|....|.++|.+.+... +++...+.+...+.... .++..++.
T Consensus 20 ~i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~d~A~v~ 98 (143)
T 4i4k_A 20 AVAALPARIVAAWADHDADRFADVFAEDGTMILPGLFRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLL-GDGIALLI 98 (143)
T ss_dssp HHHTHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTEEEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEE-ETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhhcCceEEeCCCeecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEEc-CCCEEEEE
Confidence 345788999999985 78999999999999998898899999999988653 23455555555555543 23344444
Q ss_pred EEEEEEeCCCC
Q 034293 82 VSDVPFDANTS 92 (99)
Q Consensus 82 V~G~~~~~~~~ 92 (99)
..|.+..++.+
T Consensus 99 ~~~~~~~~g~~ 109 (143)
T 4i4k_A 99 TEGGILAPGET 109 (143)
T ss_dssp EEEEEECTTCS
T ss_pred eccceecCCCC
Confidence 55656555543
No 16
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=97.17 E-value=0.0017 Score=41.42 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCc--------ccccHHHHHHHHhcCC
Q 034293 7 AKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ--------KIQGSQNIVAKLTSLP 56 (99)
Q Consensus 7 g~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~--------~~~G~~~I~~~l~~l~ 56 (99)
...|++.||..+++ +.+.|..+|.++..+...|. ...|+++|.+.+..+.
T Consensus 6 ~~~~v~~~~~a~~~gD~~~l~~l~a~Dv~~~~~g~~~~~p~~g~~~G~~av~~~~~~~~ 64 (143)
T 3dm8_A 6 LWRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIA 64 (143)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCTTTCTTCEEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHhcCCCeEEEecCCCCcCCCCccccCHHHHHHHHHHHH
Confidence 37899999999985 78999999999988776664 3689999999998775
No 17
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=97.07 E-value=0.0029 Score=40.04 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhHcc-ChhhhhccccCCceEEE-cCcccccHHHHHHHHhcCC
Q 034293 7 AKAFVEHYYTTFDA-NRTGLANLYQEGSMLTF-EGQKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 7 g~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~-~g~~~~G~~~I~~~l~~l~ 56 (99)
-.+.+..|+..+++ +.+.+..+|.+++.+.. .|.++.|.++|.+.+..+.
T Consensus 5 I~~l~~~~~~A~~~~D~d~~~~lfa~Dav~~~~~g~~~~G~~aI~~~~~~~~ 56 (142)
T 2gxf_A 5 LKDIISACDLAIQNEDFDTLMNYYSEDAVLVVKPGMIARGKEEIKKAFITIA 56 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSSSCEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEEcCCCCcccCHHHHHHHHHHHH
Confidence 45678999999985 78999999999999854 6889999999999998643
No 18
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=97.06 E-value=0.005 Score=37.44 Aligned_cols=69 Identities=17% Similarity=0.281 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcC-cccccHHHHHHHHhcCC-CCceeEEEEEeeeee
Q 034293 3 PDSVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG-QKIQGSQNIVAKLTSLP-FQQCQHSITTVDCQP 71 (99)
Q Consensus 3 ~~~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g-~~~~G~~~I~~~l~~l~-~~~~~~~i~s~D~q~ 71 (99)
....-.+.+.+|+..+++ +.+.|..+|.+++.+...+ ..+.|.++|.+.+..+. .....+.+...+...
T Consensus 4 ~~~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 75 (129)
T 3hx8_A 4 AKEAIEAANADFVKAYNSKDAAGVASKYMDDAAAFPPDMARVDGRQNIQKLWQGAMDMGISELKLTTLDVQE 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTSCCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCCCCcccCHHHHHHHHHHHHhCCCceEEEEEEEEEc
Confidence 455667889999999985 7899999999999986543 56899999999887542 112456666555554
No 19
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=97.03 E-value=0.0054 Score=40.00 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEE-cCcccccHHHHHHHHhcC---CCCceeEEEEEeeeeeeCCCCCEEE
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTF-EGQKIQGSQNIVAKLTSL---PFQQCQHSITTVDCQPSGPAGGMLV 80 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~-~g~~~~G~~~I~~~l~~l---~~~~~~~~i~s~D~q~~~~~~~ili 80 (99)
.-.+.+..|+..++. +.+.+..+|.+++.+.. .|..+.|.++|.+.+... ++....+.+...+.... .++..++
T Consensus 17 aI~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~d~A~v 95 (172)
T 3cu3_A 17 AIRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFV-NSQLALM 95 (172)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEE-ETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEeCCCCeEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEe-CCCEEEE
Confidence 456789999999985 78999999999999875 788999999999988663 23344444443444332 2233444
Q ss_pred EEEEEEEeCCC
Q 034293 81 FVSDVPFDANT 91 (99)
Q Consensus 81 ~V~G~~~~~~~ 91 (99)
...+.+..++.
T Consensus 96 ~~~~~~~~~g~ 106 (172)
T 3cu3_A 96 LVVIRVILPGQ 106 (172)
T ss_dssp EEEEEEECTTC
T ss_pred EEEEEEEeCCC
Confidence 45555666543
No 20
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=96.95 E-value=0.002 Score=39.70 Aligned_cols=64 Identities=13% Similarity=0.331 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc---------CcccccHHHHHHHHhc----CCCCceeEEEEE
Q 034293 1 MDPDSVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE---------GQKIQGSQNIVAKLTS----LPFQQCQHSITT 66 (99)
Q Consensus 1 m~~~~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~---------g~~~~G~~~I~~~l~~----l~~~~~~~~i~s 66 (99)
|+++ -.+++++.||..+++ +.+.|..+|.++..+.-. +..+.|+++|.+.|.. .| ..++++..
T Consensus 5 m~~~-~~~~~~~~~~~a~n~~D~~~l~~l~a~D~v~~~p~~~~~~g~~~~~~~G~~ai~~~~~~~~~~~~--~~~~~~~~ 81 (122)
T 3h3h_A 5 ITQA-FAQQFSREWIDAWNAHDLDAILSHYADGFEMSSPMIVQIAGEPSGRLRGKEQVGAYWREALRMIP--DLHFEWIA 81 (122)
T ss_dssp CCHH-HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECHHHHHHHC-CCCEEEHHHHHHHHHHHHHHHCT--TCCCEEEE
T ss_pred CCHH-HHHHHHHHHHHHHhccCHHHHHHhcCCCEEEECCCcccccCCCCCcEEcHHHHHHHHHHHHHHCC--CcEEEEEE
Confidence 3433 356899999999985 789999999999998743 3789999999988865 44 55566554
Q ss_pred e
Q 034293 67 V 67 (99)
Q Consensus 67 ~ 67 (99)
+
T Consensus 82 ~ 82 (122)
T 3h3h_A 82 T 82 (122)
T ss_dssp E
T ss_pred E
Confidence 3
No 21
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=96.80 E-value=0.0024 Score=40.99 Aligned_cols=59 Identities=19% Similarity=0.317 Sum_probs=46.1
Q ss_pred HHHHHHHHhHcc------ChhhhhccccCCceEEEcCcccccHHHHHHHHhcC--CCCceeEEEEEe
Q 034293 9 AFVEHYYTTFDA------NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSL--PFQQCQHSITTV 67 (99)
Q Consensus 9 ~Fv~~YY~~l~~------~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l--~~~~~~~~i~s~ 67 (99)
.-|++||..++. +.+.|..||.|++++...|.+..|+++|.+++..+ ++..++|.+...
T Consensus 6 ~~v~ry~~~~d~~~~d~~d~~~l~~Lfa~Dav~~~~~~~~~G~~ai~~F~~~~~~a~~~~~~~~~~~ 72 (131)
T 3er7_A 6 TTLDRYFDLFDASRTDEKAFDDLISLFSDEITFVLNGQEQHGIDAWKQFVRMVFTANQDIKHMYAGW 72 (131)
T ss_dssp CHHHHHHHHHHHTTTCHHHHHHHHHTEEEEEEEEETTEEEESHHHHHHHHHHHHHHEEEEEEEECCC
T ss_pred HHHHHHHHHHhhccCCccCHHHHHHHhCCCeEecCCCCCcCChHHHHHHHHHHHhhCcCceEEEEEE
Confidence 348999999983 26888999999999965678899999999999865 133667766553
No 22
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=96.67 E-value=0.0055 Score=44.98 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc-CcccccHHHHHHHHhcCCCCceeEEEEEeeeeeeCCCCCEEEEEE
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE-GQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVS 83 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~-g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~~~~~~ili~V~ 83 (99)
|.+.=|.+|.+.|+. +-+.+..+|.++..|-=. |.++.|+++|..++..-- +..+.....--+.| ..+++.-+.|+
T Consensus 193 i~~~tVl~Y~e~lNa~Df~a~aaLFA~Dg~LepPf~~PIvGreAI~~y~~~ea-q~~~l~P~~g~~ep-~e~g~~qi~vt 270 (323)
T 3mg1_A 193 VTNATVLNYMDNLNANDFDTLIELFTSDGALQPPFQRPIVGKENVLRFFREEC-QNLKLIPERGVTEP-AEDGFTQIKVT 270 (323)
T ss_dssp BCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTSCCEESHHHHHHHHHHHC-TTCEEEEEEEEEEE-CGGGCEEEEEE
T ss_pred cchHHHHHHHHHhcccCHHHHHHHccCCCeeCCCCCCCccCHHHHHHHHHHHh-ccCEEeeccCcccc-ccCCCceEEEE
Confidence 345668999999995 689999999999988631 489999999999997533 13555555545556 35677888999
Q ss_pred EEEEeCC
Q 034293 84 DVPFDAN 90 (99)
Q Consensus 84 G~~~~~~ 90 (99)
|+|+..=
T Consensus 271 GkVqTpw 277 (323)
T 3mg1_A 271 GKVQTPW 277 (323)
T ss_dssp EEEECTT
T ss_pred EEEEccc
Confidence 9997754
No 23
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=96.57 E-value=0.013 Score=36.34 Aligned_cols=50 Identities=18% Similarity=0.383 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhHc-cChhhhhccccCCceEEEc-CcccccHHHHHHHHhcCC
Q 034293 7 AKAFVEHYYTTFD-ANRTGLANLYQEGSMLTFE-GQKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 7 g~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~~-g~~~~G~~~I~~~l~~l~ 56 (99)
..+.++.||..++ .+.+.+..+|.++..+... |....|.++|.+++..++
T Consensus 10 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~p~~~~~~G~~~~~~~~~~~~ 61 (140)
T 3i0y_A 10 ATGLVQAYYEAFNRGDWDAMLAFLAEDVAHDLNQGPREIGRAAFASFLQRMN 61 (140)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTTSCEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHcCCcEEEEcCCCCceEcHHHHHHHHHHHh
Confidence 5678999999997 4789999999999865544 568999999999998876
No 24
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=96.54 E-value=0.013 Score=37.67 Aligned_cols=50 Identities=22% Similarity=0.454 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhHcc-ChhhhhccccCCceEEE-cCcccccHHHHHHHHhcCC
Q 034293 7 AKAFVEHYYTTFDA-NRTGLANLYQEGSMLTF-EGQKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 7 g~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~-~g~~~~G~~~I~~~l~~l~ 56 (99)
+.+.|+.||..+++ +.+.+..+|.++..+.. .|.++.|.++|.+.+..++
T Consensus 22 ~~~lv~~~~~a~~~~D~~~l~~l~a~D~v~~~p~g~~~~G~e~i~~~~~~~~ 73 (151)
T 3f7x_A 22 ATELVNAYYAAFNAGDMPAFLALLSEDVIHDINQGERQMGKARFAAFMEKMN 73 (151)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTTSCEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCCCCCcCCHHHHHHHHHHHH
Confidence 46789999999984 78999999999999744 4678999999999998775
No 25
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=96.54 E-value=0.0024 Score=38.40 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc--CcccccHHHHHHHHhcCC
Q 034293 2 DPDSVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE--GQKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 2 ~~~~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~--g~~~~G~~~I~~~l~~l~ 56 (99)
+.+ ...+.++.||..+++ +.+.+..+|.++..+... +.++.|.++|.+.+..+.
T Consensus 3 ~~~-~~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~~~~~~G~~~i~~~~~~~~ 59 (125)
T 1ohp_A 3 TPE-HMTAVVQRYVAALNAGDLDGIVALFADDATVENPVGSEPRSGTAAIREFYANSL 59 (125)
T ss_dssp CHH-HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEESSTTSCCEESHHHHHHHHHHHT
T ss_pred CHH-HHHHHHHHHHHHHhCCCHHHHHHHcCCCeEEECCCCCCCccCHHHHHHHHHHhc
Confidence 444 457789999999985 789999999999988764 458899999999998754
No 26
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=96.41 E-value=0.014 Score=37.48 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=40.5
Q ss_pred HHHHHHHHhHcc-ChhhhhccccCCceEEE--cCcccccHHHHHHHHhcCC
Q 034293 9 AFVEHYYTTFDA-NRTGLANLYQEGSMLTF--EGQKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 9 ~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~--~g~~~~G~~~I~~~l~~l~ 56 (99)
+.|+.|+..+++ +.+.+..+|.++..+.- .|.++.|+++|.+.+..+.
T Consensus 29 eiv~~y~~A~n~~D~d~~~~l~a~D~v~~d~~~g~~~~Greai~~~~~~~~ 79 (158)
T 4h3u_A 29 EIVTAWAAAWTGTNPNALGTLFAADGTYVDHAIGATMTGREQISGWKARTD 79 (158)
T ss_dssp HHHHHHHHHHHSSCHHHHHTTEEEEEEEEETTTTEEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhcccceEeccCCCceEecchhhhhhhhhhh
Confidence 578999999985 79999999999998764 3567899999999987754
No 27
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=96.18 E-value=0.0028 Score=39.42 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=48.0
Q ss_pred HHHHHHHHHhHcc-Ch----hhhhccccCCceEEEcCcccccHHHHHHHHhcCC--CCceeEEEE-Eeeeee
Q 034293 8 KAFVEHYYTTFDA-NR----TGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLP--FQQCQHSIT-TVDCQP 71 (99)
Q Consensus 8 ~~Fv~~YY~~l~~-~r----~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~--~~~~~~~i~-s~D~q~ 71 (99)
++++++|...+++ ++ +.|..+|.++..+.-...++.|.++|.+++..+- +...++.+. .++.++
T Consensus 6 ~~~v~ry~~aw~~~d~~~~~~~l~~l~a~D~~~~dP~~~~~G~~ai~~~~~~~~~~~~~~~f~~~~~~~~~~ 77 (121)
T 3dxo_A 6 LTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYVDPLMQGEGQQGIAAMIEAARQKFPGYRFVLAGTPDGHG 77 (121)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEECSSCEEEHHHHHHHHHHHHHHHSTTCEEEEEEEEEEET
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEEECCCCCcCCHHHHHHHHHHHHHHCCCcEEEEccCcceeC
Confidence 4677888887774 33 5799999999999876667999999999875422 236778777 777665
No 28
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=96.16 E-value=0.029 Score=36.03 Aligned_cols=83 Identities=10% Similarity=0.191 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhHc-cChhhhhccccCCc--eEEEc-CcccccHHHHHHHHhcCCCCce-eEEEEEeeeeeeCCCCCEEEE
Q 034293 7 AKAFVEHYYTTFD-ANRTGLANLYQEGS--MLTFE-GQKIQGSQNIVAKLTSLPFQQC-QHSITTVDCQPSGPAGGMLVF 81 (99)
Q Consensus 7 g~~Fv~~YY~~l~-~~r~~L~~fY~~~S--~l~~~-g~~~~G~~~I~~~l~~l~~~~~-~~~i~s~D~q~~~~~~~ili~ 81 (99)
.++-.+.||..|+ .+.+.|..+|.++. .+.+. |..+.|.++|.+.|..+= ... ...+...|.+....++..++.
T Consensus 10 ~~~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g~~l~G~~ai~~~w~~~f-~~~~~~~i~~~~v~v~~~gd~A~v~ 88 (144)
T 3gwr_A 10 PEAAEDAFYAAFEARSLDDMMAVWARDDHVACIHPLAAPLNGRAAVAAGWRSMF-GAAGRFRLQVKAVHEIRQADHVIRI 88 (144)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTCCCEESHHHHHHHHHHHH-HHHCCEEEEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCCCCcccHHHHHHHHHHHH-cCCCcEEEEEEEEEEEecCCEEEEE
Confidence 3556788999998 58999999999984 33343 467899999998886432 111 234444444332123445555
Q ss_pred EEEEEEeCC
Q 034293 82 VSDVPFDAN 90 (99)
Q Consensus 82 V~G~~~~~~ 90 (99)
+...+...+
T Consensus 89 ~~e~~~~~~ 97 (144)
T 3gwr_A 89 VDEFLTIGD 97 (144)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEecC
Confidence 666666643
No 29
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=96.15 E-value=0.004 Score=38.18 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcC--cccccHHHHHHHHhcC
Q 034293 5 SVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG--QKIQGSQNIVAKLTSL 55 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g--~~~~G~~~I~~~l~~l 55 (99)
....+.+++||..+++ +.+.|..+|.++..+...+ .++.|.++|.+.+..+
T Consensus 7 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~~~~~~G~~~i~~~~~~~ 60 (131)
T 1oh0_A 7 QEVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQG 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEESSTTSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHcCCCEEEEcCCCCCCcccHHHHHHHHHHH
Confidence 4456789999999985 7899999999999887653 4889999999988765
No 30
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=96.13 E-value=0.02 Score=35.93 Aligned_cols=55 Identities=16% Similarity=0.351 Sum_probs=45.2
Q ss_pred CChHHHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc--CcccccHHHHHHHHhcCC
Q 034293 1 MDPDSVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE--GQKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 1 m~~~~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~--g~~~~G~~~I~~~l~~l~ 56 (99)
|+.+. ..+-|++||..+++ +.+.|..+|.++..+.+. +..+.|+++|.+++...|
T Consensus 2 Ms~~~-~~~~v~~~~~a~~~~D~~~l~~llaeD~v~~~P~~~~~~~Gr~~~~~~~~~~~ 59 (128)
T 3en8_A 2 MREEK-IREALNAHWQASAAGDFDAEHDIYDDDAICDYPQSGERILGRMNLQALRSHHP 59 (128)
T ss_dssp CHHHH-HHHHHHHHHHHHHHTCHHHHTTTEEEEEEEEETTTTEEEESHHHHHHHHHHTT
T ss_pred CCHHH-HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCCCCCEEECHHHHHHHHHHCC
Confidence 54333 45778999999974 789999999999999885 346899999999998888
No 31
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=96.03 E-value=0.023 Score=35.17 Aligned_cols=61 Identities=13% Similarity=0.265 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc-----CcccccHHHHHHHHhcCC-CCceeEEEEE
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE-----GQKIQGSQNIVAKLTSLP-FQQCQHSITT 66 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~-----g~~~~G~~~I~~~l~~l~-~~~~~~~i~s 66 (99)
-..+.|++||..+++ +.+.|..+|.++..+... |.++.|.++|.+.+..+. +...++.+..
T Consensus 18 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~p~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~i~~ 85 (129)
T 3fh1_A 18 QTAEIMRRFNDVFQLHDPAALPELIAEECVIENTVPAPDGARHAGRQACVQLWSAIATQPGTRFDLEE 85 (129)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEECSCSTTTCCEEESHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred hHHHHHHHHHHHHHccCHHHHHHhcCCCEEEECCCCCCCCCcccCHHHHHHHHHHHhcCCCceEEEeE
Confidence 356789999999974 789999999999988763 467799999998886511 2244555543
No 32
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=96.02 E-value=0.011 Score=37.15 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhHcc-ChhhhhccccCCceEEEcC-cccccHHHHHHHHhcCC
Q 034293 7 AKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG-QKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 7 g~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g-~~~~G~~~I~~~l~~l~ 56 (99)
..+.++.||..+++ +.+.+..+|.++..+...| .++.|.++|.+.+..+.
T Consensus 24 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~~~~~~~~G~~~i~~~~~~~~ 75 (149)
T 1nww_A 24 DEKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPLPPAYGRDAVEQTLAGLF 75 (149)
T ss_dssp HHHHHHHHHHHGGGCCHHHHHTTBCSSCEEEETTSCCEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHhCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 46788999999985 7899999999999988765 46889999999998765
No 33
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=95.97 E-value=0.06 Score=34.47 Aligned_cols=66 Identities=18% Similarity=0.469 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEE-EcCcccccHHHHHHHHhcC---CCCceeEEEEEeeeee
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLT-FEGQKIQGSQNIVAKLTSL---PFQQCQHSITTVDCQP 71 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~-~~g~~~~G~~~I~~~l~~l---~~~~~~~~i~s~D~q~ 71 (99)
.-.+++..|...++. +.+.|..+|.+++.+. ..|....|.++|.+.+... .++...+.+...+...
T Consensus 7 aI~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~~~G~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~ 77 (146)
T 3gzr_A 7 AIQALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGMHWRGRDQIVFAHTAFLKTIFKDCKQELVTIEART 77 (146)
T ss_dssp HHHHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCCEEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhccCCeEEEcCCCCeeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEE
Confidence 346788999999985 7899999999999987 6788899999999887542 2334444444444333
No 34
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=95.87 E-value=0.024 Score=34.41 Aligned_cols=58 Identities=5% Similarity=0.083 Sum_probs=43.0
Q ss_pred HHHHHHHHhHcc-ChhhhhccccCCceEEEcCc-ccccHHHHHHHHhcCC--CCceeEEEEE
Q 034293 9 AFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ-KIQGSQNIVAKLTSLP--FQQCQHSITT 66 (99)
Q Consensus 9 ~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~-~~~G~~~I~~~l~~l~--~~~~~~~i~s 66 (99)
+.|+.||..+++ +.+.+..+..++-.....|. ++.|++++.+.+..+. +...+++|..
T Consensus 4 ~~v~~~~~a~~~gD~~~~~~~ladDv~w~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~ 65 (112)
T 3f14_A 4 TTHYSIAQHFSSGDFPAVYACFNDIIEWNIIGNQVVKGKADVIDFCNKMLPEMKGAVLTNDN 65 (112)
T ss_dssp HHHHHHHHHHHTTCGGGTGGGEEEEEEEEETTTEEEESHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHHHHcCCHHHHHHhcCCceEEEEcCCccEecHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 569999999985 67999999999866554554 5889999999887654 1124555554
No 35
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=95.84 E-value=0.0074 Score=38.77 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhHc-cChhhhhccccCCceEEEcCcccccHHHHHHHHhc
Q 034293 4 DSVAKAFVEHYYTTFD-ANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTS 54 (99)
Q Consensus 4 ~~ig~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~ 54 (99)
+....+.++.|+..++ .+.+.|..+|.++..+...|.+..|.++|.+.+..
T Consensus 16 e~aI~~l~~~~~~A~~~gD~~~l~al~a~D~v~~~~g~~~~Gr~ai~a~~~~ 67 (139)
T 3rob_A 16 ELAIRTVQYRWLEATRKFDRQVLSSLMTDDVVFLTPGRLPFGKEEFLAACEQ 67 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHccCcEEEECCCCCccCHHHHHHHHHH
Confidence 4467788999999998 58999999999999998888888899999988754
No 36
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=95.82 E-value=0.019 Score=34.88 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc---CcccccHHHHHHHHhc----CCCCceeEEEEE
Q 034293 1 MDPDSVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE---GQKIQGSQNIVAKLTS----LPFQQCQHSITT 66 (99)
Q Consensus 1 m~~~~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~---g~~~~G~~~I~~~l~~----l~~~~~~~~i~s 66 (99)
|+|. +.|+.||..++. +.+.+..+|.++... ++ +....|+++|.+.+.. .| ..+.+|..
T Consensus 2 m~~~----~~v~~~~~a~n~~D~~~~~~~~a~D~v~-h~~~~~~~~~G~~~~~~~~~~~~~~~p--~~~~~i~~ 68 (117)
T 3ff2_A 2 MSNL----ETAKAMIAAYNAQDVDTYVSYMTDDACE-ANYRGDVVREGKEGTRSGLAAAFARWP--QNHAEIKD 68 (117)
T ss_dssp CCHH----HHHHHHHHHHHTTCHHHHHTTEEEEEEE-EETTSCEEECHHHHHHHHHHHHHHHCT--TCEEEEEE
T ss_pred cCHH----HHHHHHHHHHcccCHHHHHHhcCCcEEE-EeCCCCccccCHHHHHHHHHHHHhhCC--CceEEEEE
Confidence 5555 568888999985 789999999988554 44 4568999999888765 35 55555544
No 37
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=95.65 E-value=0.067 Score=33.30 Aligned_cols=51 Identities=18% Similarity=0.384 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc----Cc--ccccHHHHHHHHhcCC
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE----GQ--KIQGSQNIVAKLTSLP 56 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~----g~--~~~G~~~I~~~l~~l~ 56 (99)
-..+.++.||..+++ +.+.+..+|.++..+... |. .+.|.++|.+.+..+.
T Consensus 11 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~~~g~~~~~~G~~~i~~~~~~~~ 68 (150)
T 1s5a_A 11 KACETLRKFMAYMLEKDMKSWTELWDENAVFEFPYAPEGSPKRIEGKAAIYDYIKDYP 68 (150)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCTTSCSEEESHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHhCCCCEEEEeecCCCCCCccccCHHHHHHHHHHhh
Confidence 456789999999975 789999999999998764 43 4799999999998764
No 38
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=95.64 E-value=0.017 Score=35.35 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCc-ccccHHHHHHHHhcC
Q 034293 5 SVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ-KIQGSQNIVAKLTSL 55 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~-~~~G~~~I~~~l~~l 55 (99)
....+.++.|+..++. +.+.+..+|.+++.+...|. ++.|.++|.+.+..+
T Consensus 11 ~~i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~~~~~~~G~~ai~~~~~~~ 63 (135)
T 3d9r_A 11 AVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRPAAVGKDELAEVYLSV 63 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSCCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCCCcccCHHHHHHHHHHH
Confidence 3457889999999985 78999999999998876554 567999999998765
No 39
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=95.62 E-value=0.011 Score=38.02 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc--CcccccHHHHHHHHhcCC
Q 034293 4 DSVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE--GQKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 4 ~~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~--g~~~~G~~~I~~~l~~l~ 56 (99)
.....+.++.||..+++ +.+.|..+|.++..+.-. +.++.|.++|.++|..+.
T Consensus 8 ~~~~~~~~~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~~~~~~G~~~v~~~~~~~~ 63 (143)
T 3mso_A 8 EANAAATLAEWHGLIARRDLSGLPRLLHPDAVFRSPMAHKPYAGAPVVSMILNTVL 63 (143)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTGGGGEEEEEEEECSSCSSCEESHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCCCCCccCHHHHHHHHHHHH
Confidence 34567889999999985 689999999999998753 378999999999987643
No 40
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=95.56 E-value=0.03 Score=36.16 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCcccccHHHHHHHHhcCC-CCceeEEEEEeeeee
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLP-FQQCQHSITTVDCQP 71 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~-~~~~~~~i~s~D~q~ 71 (99)
.-.+++..|+..+|. +.+.+..+|.+++.+.+.|....|.++|.+.+.... ...+.|.+..+....
T Consensus 15 ~I~~l~~~y~~a~D~~D~~~~~~lf~~Da~~~~~g~~~~G~~~i~~~~~~~~~~~~~~h~~~~~~i~~ 82 (170)
T 2chc_A 15 RIQALCARYCLTINTQDGEGWAGCFTEDGAFEFDGWVIRGRPALREYADAHARVVRGRHLTTDLLYEV 82 (170)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETTEEEESHHHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhcccCcEEEEeCCCCcCCHHHHHHHHHHhhcccceEEecCCeEEEE
Confidence 456789999999995 679999999999999888888899999998886531 025667666555433
No 41
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=95.53 E-value=0.12 Score=32.60 Aligned_cols=66 Identities=11% Similarity=0.214 Sum_probs=45.8
Q ss_pred CChHHHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCcccccHHHHHHHHhcCC--CCceeEEEEEe
Q 034293 1 MDPDSVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLP--FQQCQHSITTV 67 (99)
Q Consensus 1 m~~~~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~--~~~~~~~i~s~ 67 (99)
|+.+ -..+.+++||..++. +.+.+..+|.++..+...+....|.++|.+.+..+. |...++.|..+
T Consensus 1 Ms~~-~~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~ 69 (152)
T 2gex_A 1 MSTT-ANKERCLEMVAAWNRWDVSGVVAHWAPDVVHYDDEDKPVSAEEVVRRMNSAVEAFPDLRLDVRSI 69 (152)
T ss_dssp -CHH-HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTSCEECHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred CChh-HHHHHHHHHHHHHhCCCHHHHHHHcCCCeEEeCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 5543 346788999999875 678999999999766542457889999988776532 22556666543
No 42
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*
Probab=95.53 E-value=0.033 Score=37.91 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=53.4
Q ss_pred HHHHHHHHHhHccChhhhhccccCCceEEE----cCc--ccccHHHHHHHHhcCC--CCceeEEEEEeeeeeeCCC-CCE
Q 034293 8 KAFVEHYYTTFDANRTGLANLYQEGSMLTF----EGQ--KIQGSQNIVAKLTSLP--FQQCQHSITTVDCQPSGPA-GGM 78 (99)
Q Consensus 8 ~~Fv~~YY~~l~~~r~~L~~fY~~~S~l~~----~g~--~~~G~~~I~~~l~~l~--~~~~~~~i~s~D~q~~~~~-~~i 78 (99)
.+=|++|+..+.++++.+..+|.++..+.+ .|. .+.|+++|.+.+..++ +.. ..+..++.... .+ +.+
T Consensus 44 r~vV~~yl~~~~~D~~~~~eLfAeDav~e~P~~~~G~P~r~~GReai~~~~~~~~~~~~d--~~~~~~~v~~t-aDpd~V 120 (185)
T 3jum_A 44 RKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPD--WVWTDIQIFET-QDPNWF 120 (185)
T ss_dssp HHHHHHHHHCCGGGGGGGGGGEEEEEEEEESCCTTSSCEEEESHHHHHHHHHHHHHHSTT--CEEEEEEEECC-SSTTEE
T ss_pred HHHHHHHHHHhccCHHHHHHhCCCCEEEEecCCCCCCCccccCHHHHHHHHHHHHhhCCC--CeeeEEEEEEe-cCCCEE
Confidence 456899999999999999999999999887 343 3789999999976654 112 34555666553 33 345
Q ss_pred EEEEEEEE
Q 034293 79 LVFVSDVP 86 (99)
Q Consensus 79 li~V~G~~ 86 (99)
++-..|.-
T Consensus 121 vvE~~~~G 128 (185)
T 3jum_A 121 WVECRGEG 128 (185)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 55555543
No 43
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=95.44 E-value=0.034 Score=39.61 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhHc-cChhhhhccccCCceEEEc--CcccccHHHHHHHHhcCC
Q 034293 5 SVAKAFVEHYYTTFD-ANRTGLANLYQEGSMLTFE--GQKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~~--g~~~~G~~~I~~~l~~l~ 56 (99)
+-.++.++.||..++ .+.+.|..+|.++..+... +.++.|.++|.++|..+.
T Consensus 6 ~~~~~~v~~~~~~~~~~D~~~l~~l~a~Dav~~~P~~~~~~~Gr~ai~~~~~~~~ 60 (283)
T 3rga_A 6 TVRKEVALEYCRRVNAGELEGVLQLFAPDARLVDPLGTEPVVGRAALAARLAPAL 60 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECSSSSCCEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCCCCCcCcHHHHHHHHHHHH
Confidence 346678999999998 5789999999999998864 457899999999997643
No 44
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=95.41 E-value=0.1 Score=32.95 Aligned_cols=67 Identities=7% Similarity=0.038 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhHc-cChhhhhccccCCceEEEcCcccccHHHHHH-HHhcC-C-CCceeEEEEEeeeee
Q 034293 5 SVAKAFVEHYYTTFD-ANRTGLANLYQEGSMLTFEGQKIQGSQNIVA-KLTSL-P-FQQCQHSITTVDCQP 71 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~-~l~~l-~-~~~~~~~i~s~D~q~ 71 (99)
....+.++.|+..++ .+.+.|..+|.+++.+...+....|.++|.+ .+... . +....+.+..+....
T Consensus 30 ~~i~~~~~~~~~A~~~~D~~~l~~l~a~Da~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 100 (148)
T 3bb9_A 30 SAAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGGKVERSLTEYANHHMLADMAYLKGLTITPKEHQITI 100 (148)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTEEECSHHHHHHTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhhCCCeEEEeCCCccCCHHHHHHHhHHHHHHhccCceEEeeeEEEEE
Confidence 345677899999997 5899999999999887666656889999988 55432 1 013455665555444
No 45
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=95.38 E-value=0.064 Score=33.55 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHHHHH-hHc-cChhhhhccccCCceEEEcC-----cccccHHHHHHHHhcCC--CCceeEEEEEe
Q 034293 1 MDPDSVAKAFVEHYYT-TFD-ANRTGLANLYQEGSMLTFEG-----QKIQGSQNIVAKLTSLP--FQQCQHSITTV 67 (99)
Q Consensus 1 m~~~~ig~~Fv~~YY~-~l~-~~r~~L~~fY~~~S~l~~~g-----~~~~G~~~I~~~l~~l~--~~~~~~~i~s~ 67 (99)
|+.++-..+.|++||. .++ .+.+.+..+|.++..+.++. ....|.+++.+.+..+. |...+++|..+
T Consensus 2 Ms~~~~~~~~v~~~~~~~~~~~d~~~~~~~~a~d~~~~~~p~~~~~g~~~G~~~~~~~~~~~~~~~pd~~~~i~~~ 77 (146)
T 3f9s_A 2 MSISSKAKEILTQFTREVWSEGNIEASDKYIAPKYTVLHDPGDPWEGRELDVAGYKERVKTLRAAFPDQCFDIQGL 77 (146)
T ss_dssp CEECTTHHHHHHHHHHHHTTTCCGGGHHHHEEEEEEEEECTTCTTTTCEECHHHHHHHHHHHHHHSTTCEEEEEEE
T ss_pred CChHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCeeeccCCCCCCCCCcCCHHHHHHHHHHHHhhCCCcEEEEEEE
Confidence 5444456788999996 776 47899999999998855543 25789999988776532 22666666544
No 46
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=95.31 E-value=0.16 Score=32.35 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCcccccHHHHHHHHhcCC--CCceeEEEEEe
Q 034293 1 MDPDSVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLP--FQQCQHSITTV 67 (99)
Q Consensus 1 m~~~~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~--~~~~~~~i~s~ 67 (99)
|+.+ -..+.++.||..++. +.+.+..+|.++..+.. +....|.++|.+.+..+. |...+++|..+
T Consensus 1 Ms~~-~~~~~v~~~~~a~~~~D~~~~~~~~a~D~v~~~-p~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~ 68 (158)
T 2gey_A 1 MSMA-ERKALCLEMVAAWNRWDLSGIIKHWSPDIVHYS-EDNEVSSADMVKLMEGGLKAFPDLQLEVKSI 68 (158)
T ss_dssp -CHH-HHHHHHHHHHHHHHTTCTHHHHTTEEEEEEEEE-TTEEECHHHHHHHHHHHHHHSTTCEEEEEEE
T ss_pred CChH-HHHHHHHHHHHHHcCCCHHHHHHHcCCCeEEeC-CCCCCCHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 5543 346788999998885 77899999999987766 456789999988776532 22566666553
No 47
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=95.26 E-value=0.023 Score=34.96 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=46.6
Q ss_pred CChHHHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCcccccHHHHHHHHhcCC
Q 034293 1 MDPDSVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 1 m~~~~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~ 56 (99)
|+-..-..+.|+.||..+++ +.+.|..++.|+..+..+|.++.|.+++.+.+..+.
T Consensus 2 ~~~~~~~~~~v~~f~~A~~~gD~~~l~~lla~Dvv~~~~~g~~~G~~~v~~~~~~~~ 58 (114)
T 3f40_A 2 MKTQITTRDLVLEFIHALNTENFPAAKKRLNENFTFNGPMGHREGSERYMNDMEKMK 58 (114)
T ss_dssp CCSCCCHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEEETTEEEESHHHHHHHHHHHC
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCCcccCHHHHHHHHHHHH
Confidence 43334456788899999985 789999999999998888888999999999998876
No 48
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=95.24 E-value=0.22 Score=31.64 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhHc-cChhhhhccccCCceEEE--cCcccccHHHHHHHHhcC
Q 034293 5 SVAKAFVEHYYTTFD-ANRTGLANLYQEGSMLTF--EGQKIQGSQNIVAKLTSL 55 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~--~g~~~~G~~~I~~~l~~l 55 (99)
..-.+.+.+|+..++ .+.+.|..+|.++..+.- .|....|.++|.+.+..+
T Consensus 20 ~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~~~~~~~~~G~~~i~~~~~~~ 73 (156)
T 3h51_A 20 REVAALFDTWNAALATGNPHKVADLYAPDGVLLPTVSNEVRASREQIENYFEMF 73 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECSSCSSCBCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCCCccccCHHHHHHHHHHH
Confidence 345677889999998 578999999999987753 345689999999888764
No 49
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=95.20 E-value=0.27 Score=29.97 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhHc-cChhhhhccc--cCCceEEEcCcccccHHHHHHHHhc-CC--CCceeEEEEEeeeee
Q 034293 4 DSVAKAFVEHYYTTFD-ANRTGLANLY--QEGSMLTFEGQKIQGSQNIVAKLTS-LP--FQQCQHSITTVDCQP 71 (99)
Q Consensus 4 ~~ig~~Fv~~YY~~l~-~~r~~L~~fY--~~~S~l~~~g~~~~G~~~I~~~l~~-l~--~~~~~~~i~s~D~q~ 71 (99)
+.--.+-++.+|..++ .+.+.+..+| .++..+...|....|.++|.+.+.. ++ +......+.-++.+.
T Consensus 4 ~~~I~~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~~~~~~~~G~~~i~~~~~~~f~~~~~~~~l~~~~~~~~~ 77 (122)
T 3b7c_A 4 TDDIVQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGKFRNGWDETLAAYKKNYPDKESLGELKFTIKEIKM 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSCEEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHhhcCCCCEEEECCCccccCHHHHHHHHHHhcCChhhcCeeEEEEEEEEE
Confidence 3334456788888887 5889999999 6777666555578999999887764 22 122344455555555
No 50
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=95.05 E-value=0.11 Score=33.47 Aligned_cols=49 Identities=20% Similarity=0.455 Sum_probs=40.5
Q ss_pred HHHHHHHHHhHcc-ChhhhhccccCCceEEEcCc------ccccHHHHHHHHhcCC
Q 034293 8 KAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ------KIQGSQNIVAKLTSLP 56 (99)
Q Consensus 8 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~------~~~G~~~I~~~l~~l~ 56 (99)
.+.+++||..+++ +.+.|..+|.++..+...+. .+.|+++|.+++..+.
T Consensus 26 ~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~~~g~~~~~~G~~ai~~~~~~~~ 81 (163)
T 1z1s_A 26 KEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFP 81 (163)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEECSSCCTTSCCEEESHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCEEEECcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 4678999999985 67999999999998876422 3789999999998775
No 51
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=95.04 E-value=0.34 Score=30.32 Aligned_cols=51 Identities=14% Similarity=0.215 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcC-cccccHHHHHHHHhcCC
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG-QKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g-~~~~G~~~I~~~l~~l~ 56 (99)
-..+.++.||..+++ +.+.|..+|.++..+.-.| .++.|.++|.+.+..+.
T Consensus 16 ~~~~~v~~f~~a~~~gD~~~l~~l~a~D~v~~~~~~~~~~G~~~i~~~~~~~~ 68 (149)
T 2bng_A 16 EAIRAVEAFLNALQNEDFDTVDAALGDDLVYENVGFSRIRGGRRTATLLRRMQ 68 (149)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTTEEEECHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEeCCCCCccCHHHHHHHHHHHH
Confidence 456789999999975 7899999999998776555 56899999999999876
No 52
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=94.99 E-value=0.28 Score=29.71 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=39.9
Q ss_pred HHHHHHHHHhHcc-ChhhhhccccCCceEEEcC--------cccccHHHHHHHHhcCC
Q 034293 8 KAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG--------QKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 8 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g--------~~~~G~~~I~~~l~~l~ 56 (99)
.+-+++||..+++ +.+.+..+|.++..+...+ ....|.++|.+.+..+.
T Consensus 6 ~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~~~~~~p~~~~~~~~G~~~~~~~~~~~~ 63 (132)
T 3ebt_A 6 MQTVRESYEAFHRRDLPGVLAALAPDVRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVP 63 (132)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECGGGGGGTCCEEEEHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhccCHHHHHHhcCCCEEEEeCCCCCCcccCCcCcCHHHHHHHHHHHH
Confidence 3568888888885 7899999999998877653 46789999999998765
No 53
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=94.92 E-value=0.055 Score=32.89 Aligned_cols=49 Identities=6% Similarity=0.062 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhHcc-ChhhhhccccCCceEEE-cC-cccccHHHHHHHHhcC
Q 034293 7 AKAFVEHYYTTFDA-NRTGLANLYQEGSMLTF-EG-QKIQGSQNIVAKLTSL 55 (99)
Q Consensus 7 g~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~-~g-~~~~G~~~I~~~l~~l 55 (99)
..+.++.||..++. +.+.+..+|.++..+.. .| ....|.++|.+.+..+
T Consensus 5 ~~~~v~~~~~a~n~~D~~~~~~~~a~D~~~~~~~g~~~~~G~~ai~~~~~~~ 56 (123)
T 2k54_A 5 IELPVQKQLEAYNARDIDAFMAWWADDCQYYAFPATLLAGNAAEIRVRHIER 56 (123)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEETTTEEEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHhhcCCceEEEcCCCCcccCCHHHHHHHHHHH
Confidence 45678999999985 78999999999987654 34 3589999999988753
No 54
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=94.92 E-value=0.15 Score=31.37 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc-C-cc-------cccHHHHHHHHhcCC
Q 034293 5 SVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE-G-QK-------IQGSQNIVAKLTSLP 56 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~-g-~~-------~~G~~~I~~~l~~l~ 56 (99)
.-..+.++.||..+++ +.+.+..+|.++..+... | .+ +.|.++|.+.+..+.
T Consensus 7 ~~~~~~v~~~~~a~~~~D~~~~~~l~a~D~v~~~p~~~~~~~~~g~~~~G~~ai~~~~~~~~ 68 (139)
T 2a15_A 7 SPALIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHI 68 (139)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEESSSSSBTTBTTSSCEESHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHhcCCCEEEECCCCCCccCCCCceeecHHHHHHHHHHhc
Confidence 3456788999999985 789999999999987642 2 23 799999999998764
No 55
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=94.83 E-value=0.028 Score=34.61 Aligned_cols=55 Identities=16% Similarity=0.324 Sum_probs=43.1
Q ss_pred CChHHHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCc-----ccccHHHHHHHHhcCC
Q 034293 1 MDPDSVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ-----KIQGSQNIVAKLTSLP 56 (99)
Q Consensus 1 m~~~~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~-----~~~G~~~I~~~l~~l~ 56 (99)
|+.+ -..+.++.||..+++ +.+.+..+|.++..+...|. ...|.++|.+.+..+.
T Consensus 2 Ms~~-~~~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~p~~~p~~g~~~G~~~i~~~~~~~~ 62 (135)
T 3fgy_A 2 MSTQ-ENVQIVKDFFAAMGRGDKKGLLAVSAEDIEWIIPGEWPLAGTHRGHAALAALLQKAS 62 (135)
T ss_dssp CCCH-HHHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEECSSSTTCEEEEHHHHHHHHHHHHH
T ss_pred CCcc-hHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEEEcCCCccceEEeCHHHHHHHHHHHH
Confidence 5442 346788999999985 78999999999998877653 4689999998887754
No 56
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=94.70 E-value=0.021 Score=36.14 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCccc-ccHHHHHHHHhcCC-----CCceeEEEEEeee
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQKI-QGSQNIVAKLTSLP-----FQQCQHSITTVDC 69 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~~~-~G~~~I~~~l~~l~-----~~~~~~~i~s~D~ 69 (99)
.-.+++..|...+|. +.+.+..+|.+++.+...+... .|.++|.+.+...+ +..+.|.+..+..
T Consensus 20 ~I~~l~~~y~~a~D~~d~~~~~~lf~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~h~~~~~~i 90 (155)
T 2rfr_A 20 EIRELIARYGPLADSGDAEALSELWVEDGEYAVVGFATAKGRAAIAALIDGQTHRALMADGCAHFLGPATV 90 (155)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTSCCEESHHHHHHHHHSHHHHHHHHHCEEEEECCCEE
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhcCCceEEEcCCCccccCHHHHHHHHHhccccccCCCceeEeCCCeEE
Confidence 456789999999995 7799999999999988876566 99999999998752 1246676654443
No 57
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=94.67 E-value=0.15 Score=31.44 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=38.9
Q ss_pred HHHHHHHHHhHcc-ChhhhhccccCCceEEEcC-----cccccHHHHH-HHHhcCC
Q 034293 8 KAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG-----QKIQGSQNIV-AKLTSLP 56 (99)
Q Consensus 8 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g-----~~~~G~~~I~-~~l~~l~ 56 (99)
.+.|++||..+++ +.+.+..+|.++..+...+ ....|.++|. +++..+.
T Consensus 15 ~~~v~~~~~a~~~gD~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~i~~~~~~~~~ 70 (140)
T 3ec9_A 15 YQIVADHYAASDRHDPAAMMADIAPAIEWTEMAGFPCAGTYRSADEIVRNVFRRLG 70 (140)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECTTSTTCEEECSHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhcCCCeEEEEcCCCccceEEcCHHHHHHHHHHHHH
Confidence 5779999999975 6899999999999877654 3568999995 5676653
No 58
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=94.58 E-value=0.44 Score=29.41 Aligned_cols=68 Identities=9% Similarity=0.162 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHhHc-cChhhhhccccCCceEEEcC--cccccHHHHHHHHhc----CCCCceeEEEEEeeeee
Q 034293 3 PDSVAKAFVEHYYTTFD-ANRTGLANLYQEGSMLTFEG--QKIQGSQNIVAKLTS----LPFQQCQHSITTVDCQP 71 (99)
Q Consensus 3 ~~~ig~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~~g--~~~~G~~~I~~~l~~----l~~~~~~~~i~s~D~q~ 71 (99)
.+..-.+.+++|+..++ .+.+.+..+|.++..+...+ ....|.++|.+.|.. .+ ...++.+..+..+.
T Consensus 6 ~~~~I~~l~~~~~~A~~~~D~~~~~~l~a~D~v~~~~~~~~~~~G~~air~~~~~~~~~~~-~~~~~~~~~~~v~~ 80 (142)
T 3f7s_A 6 AESEIRQLIERWMQAVRDRDIPGIIAPYADDIVAFDAIQALQFKGKSAYTAHWEMCMGMCT-GPMVFELAQLTVHA 80 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECSSSSSCEESHHHHHHHHHHHHHTCC-SCEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCCCccccCHHHHHHHHHHHHHhCC-CceEEEEeeeEEEE
Confidence 34556778899999997 47899999999997764332 345799999887643 33 24566676665554
No 59
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=94.57 E-value=0.15 Score=32.47 Aligned_cols=66 Identities=14% Similarity=0.278 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhHcc--ChhhhhccccCCceEEEcC-c--ccccHHHHHHHHhcC--CCCceeEEEEEeeee
Q 034293 5 SVAKAFVEHYYTTFDA--NRTGLANLYQEGSMLTFEG-Q--KIQGSQNIVAKLTSL--PFQQCQHSITTVDCQ 70 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~--~r~~L~~fY~~~S~l~~~g-~--~~~G~~~I~~~l~~l--~~~~~~~~i~s~D~q 70 (99)
..-.+++..|+..+|. +.+.+..+|.+++.+...+ . .+.|.++|.+.+... ++..+.|.+..+...
T Consensus 28 ~~I~~l~~~y~~alD~~~D~d~~~~lfteDa~~~~~~~g~~~~~G~~~i~~~~~~~~~~~~~~~h~~~~~~I~ 100 (163)
T 3b8l_A 28 LAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFDLSGIGLTPQVGHAGIREFFTNVFANMSHHAHYLTNFAVT 100 (163)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEEECGGGTCCCEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCcCCCHHHHHhhcCCCEEEEecCCCCCCccCHHHHHHHHHHhhccCCceEEEecCEEEE
Confidence 3456889999999997 6789999999999987632 2 688999998888653 233667777766655
No 60
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=94.49 E-value=0.04 Score=34.72 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhHc-cChhhhhccccCCceEEEcCc----ccccHHHHHHHHhcCC
Q 034293 5 SVAKAFVEHYYTTFD-ANRTGLANLYQEGSMLTFEGQ----KIQGSQNIVAKLTSLP 56 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~~g~----~~~G~~~I~~~l~~l~ 56 (99)
.+..+.++.|+..+. .+.+.|..++.++..+.++|. .+.|+++|.++|..+.
T Consensus 12 ~~~~~~~~~f~~A~~~gD~~~l~~lla~D~v~~~pg~~~~g~~~G~~~v~~~~~~~~ 68 (134)
T 3dmc_A 12 KVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWFPMGEFHGLNVGKERAKEFFTYVS 68 (134)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHTTEEEEEEEEESSGGGBEEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHcCCCEEEEecCCCCCccchhHHHHHHHHHHHH
Confidence 578889999999987 578999999999999999887 5789999988887654
No 61
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}
Probab=94.42 E-value=0.25 Score=32.27 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcC-cccccHHHHHHHH-hcC--CCCceeEEEEEeeeee
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG-QKIQGSQNIVAKL-TSL--PFQQCQHSITTVDCQP 71 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g-~~~~G~~~I~~~l-~~l--~~~~~~~~i~s~D~q~ 71 (99)
.-.+|+..|...+|. +.+.+..+|.+++.+.+.+ ..+.|.++|.+.+ ... ++..+.|.+..+....
T Consensus 32 ~I~~ll~ry~~alD~~d~d~~~~lfteDa~~~~~~~g~~~G~~~i~~~~~~~~~~~~~~t~H~i~n~~I~~ 102 (176)
T 3a76_A 32 AIQDLYSDKLIAVDKRQEGRLASIWWDDAEWTIEGIGTYKGPEGALDLANNVLWPMFHECIHYGTNLRLEF 102 (176)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETTTEEEEHHHHHHHHHHHTHHHHEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhccCCeEEEcCCCccccCHHHHHHHHHHhhhcccCceEEecCCeEEEE
Confidence 456889999999995 6799999999999987754 3578999999998 542 3447788887665544
No 62
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=94.41 E-value=0.028 Score=40.07 Aligned_cols=52 Identities=15% Similarity=0.122 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc--CcccccHHHHHHHHhcCC
Q 034293 5 SVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE--GQKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~--g~~~~G~~~I~~~l~~l~ 56 (99)
+-..+.++.||..+++ +.+.|..+|.++..+... +.++.|+++|.++|..+.
T Consensus 138 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~~~~~~G~~ai~~~~~~~~ 192 (283)
T 3rga_A 138 ERRKELAREHCLRINDGDVDGLLKLYSPRIRFEDPVGSWTRTGLEALRAHATMAV 192 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEESSTTSCEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCCCCcccCHHHHHHHHHHhh
Confidence 4567889999999984 789999999999998763 357899999999997765
No 63
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}
Probab=94.24 E-value=0.045 Score=33.60 Aligned_cols=57 Identities=9% Similarity=0.096 Sum_probs=41.0
Q ss_pred HHHHHHHHHhHcc-ChhhhhccccCCceEEEcCcccccHHHHHHHHhcCC--CCceeEEEEEe
Q 034293 8 KAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLP--FQQCQHSITTV 67 (99)
Q Consensus 8 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~--~~~~~~~i~s~ 67 (99)
.+.++.||+.+++ +.+.+..+|.++.. |+| ...|.+++.+.+..+- |+..+++|..+
T Consensus 6 ~~~v~~~~~~~~~~d~~~~~~~~a~d~~--~~~-~~~G~~~~~~~~~~~~~~~pd~~~~i~~~ 65 (128)
T 3ehc_A 6 NDIYLAYLDSLNHQAFDELGTFVDDNVE--HNG-RPFGLSGYRDMLVKDFADIPDLRFEAEIL 65 (128)
T ss_dssp HHHHHHHHHHHHTTCGGGGGGTEEEEEE--ETT-BCCHHHHHHHHHHHHHHHCTTCCCCEEEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCcceE--eCC-CCCCHHHHHHHHHHHHhhCCCceEEEEEE
Confidence 4678899998885 67899999999865 456 7789999988776421 22555555443
No 64
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=93.96 E-value=0.53 Score=27.93 Aligned_cols=72 Identities=10% Similarity=0.034 Sum_probs=47.7
Q ss_pred CChHHHHHHHHHHHHHhHc-cChhhhhccccCCceEEEcCcccccHHHHHHHHhcCCCCceeEEEEEeeeeee
Q 034293 1 MDPDSVAKAFVEHYYTTFD-ANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPS 72 (99)
Q Consensus 1 m~~~~ig~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~ 72 (99)
|+....-.+..+.|+..+. .+.+.|..++.|+-.+...+-...|.+++.+.+.+-+.......+..+..+..
T Consensus 2 m~~~~~i~~l~~~~~~A~~~~D~~~l~~l~~~d~~~~~~~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~ 74 (123)
T 2r4i_A 2 MNQRDVILDCEKKLLTAIQNNDVESLEVLLHDDLLFIIPSGETVTKETDIAAYSSGKIALRAVVPSDYIIRII 74 (123)
T ss_dssp CCHHHHHTHHHHHHHHHHHHTCHHHHHHHEEEEEEEECTTSCEECHHHHHHHHHTTCEEEEEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHhhhCcCeEEECCCCCCccHHHHHHHHhcCCeEEEEEeecccEEEEE
Confidence 5444444556777887765 68999999999986666644455678887777765432234455666667664
No 65
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=93.86 E-value=0.074 Score=33.77 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCc-c----cccHHHHHHHHhcC
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ-K----IQGSQNIVAKLTSL 55 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~-~----~~G~~~I~~~l~~l 55 (99)
-..+.+++||..+++ +.+.+..+|.++..+...|. + +.|.++|.+.+..+
T Consensus 30 ~~~~~v~~~~~a~~~gD~~~l~~l~a~D~~~~~~~~~~~~g~~~G~~~i~~~~~~~ 85 (156)
T 1tuh_A 30 QNAETVRRGYAAFNSGDMKTLTELFDENASWHTPGRSRIAGDHKGREAIFAQFGRY 85 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHhcCCCEEEEccCCCCccceEcCHHHHHHHHHHH
Confidence 356789999999985 78999999999988776654 2 68999998888764
No 66
>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}
Probab=93.73 E-value=0.33 Score=30.85 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=38.5
Q ss_pred HHHHHHHHhHc-cChhhhhccccCCceEEE-cCcccccHHHHHHHHhcC
Q 034293 9 AFVEHYYTTFD-ANRTGLANLYQEGSMLTF-EGQKIQGSQNIVAKLTSL 55 (99)
Q Consensus 9 ~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~-~g~~~~G~~~I~~~l~~l 55 (99)
+.|+.||..++ .+.+.+..+|.++..... .|....|.++|.+.+..+
T Consensus 22 ~~v~~~~~a~n~~D~~~l~~l~a~D~v~~~~~~~~~~G~e~i~~~~~~~ 70 (150)
T 3f8h_A 22 DTIARYFDAFNAGDTDGMLACLSEDVAHHVNEGNIRVGKEKFAAFCAHM 70 (150)
T ss_dssp CHHHHHHHHHHHTCHHHHHTTEEEEEEEEEETTEEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHcCCCeEEeCCCCcceeCHHHHHHHHHHH
Confidence 46889999998 578999999999998322 356789999999998854
No 67
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=93.70 E-value=0.14 Score=33.41 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEE--cCcccccHHHHHHHHhcC
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTF--EGQKIQGSQNIVAKLTSL 55 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~--~g~~~~G~~~I~~~l~~l 55 (99)
....|...|-..|-. +...|.+||..+|.+.= .|....|...|.++|+.-
T Consensus 21 ~EqqlA~~Yi~AlT~hDy~~L~~FynrdsVf~D~ta~~~YtG~r~Ii~Fl~Ra 73 (154)
T 3gzb_A 21 QEQQLAVKYMDALTEHDYKTLITFYNRDSIFFDKTANRKYTGGRFIIDFLERA 73 (154)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTCCTTCEEEETTTTEEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHhCccceeeeeccCcceeCcHHHHHHHHHH
Confidence 345788889988865 89999999999999875 478899999999999863
No 68
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=93.49 E-value=0.78 Score=28.29 Aligned_cols=66 Identities=9% Similarity=0.067 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhHc-cChhhhhccccCCceEEE---cCcccccHHHHHHHHhcC-CC--CceeEEEEEeeeee
Q 034293 6 VAKAFVEHYYTTFD-ANRTGLANLYQEGSMLTF---EGQKIQGSQNIVAKLTSL-PF--QQCQHSITTVDCQP 71 (99)
Q Consensus 6 ig~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~---~g~~~~G~~~I~~~l~~l-~~--~~~~~~i~s~D~q~ 71 (99)
--.+..+.|+..++ .+.+.+..+|.++..+.- .|..+.|.++|.+.|... +. ...+..+.....+.
T Consensus 14 ~I~~l~~~~~~A~~~~D~~~~~~l~a~d~~~~~~~~~g~~~~G~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~ 86 (143)
T 2ux0_A 14 EIIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGNLVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHV 86 (143)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTCEEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhcCCCcEEEeccCCCcEEEcHHHHHHHHHhhhhcCCCceeEEEeCCEEEE
Confidence 34567788888887 589999999999977653 368889999999998775 21 23444555555555
No 69
>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa}
Probab=93.37 E-value=0.11 Score=34.54 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhHccChhhhhccccCCce---EEE-cCcc--cccHHHHHHHHhcCC--CCceeEEEEEeeeeeeCCCCCE
Q 034293 7 AKAFVEHYYTTFDANRTGLANLYQEGSM---LTF-EGQK--IQGSQNIVAKLTSLP--FQQCQHSITTVDCQPSGPAGGM 78 (99)
Q Consensus 7 g~~Fv~~YY~~l~~~r~~L~~fY~~~S~---l~~-~g~~--~~G~~~I~~~l~~l~--~~~~~~~i~s~D~q~~~~~~~i 78 (99)
-.+-|++|+..+.++++.++.+|.++.. +.- .|.+ +.|+++|.+.+..++ +.. .+...+..++....+.+
T Consensus 21 Nr~vV~~~l~~~~~D~~~~~~LfAeD~v~~~~e~~~G~P~~~~Gre~l~~~~~~~~~~~~~--~~~~~~~i~~t~Dpd~v 98 (163)
T 3ff0_A 21 NRETVVKYMNTKGQDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFPD--WEWYNIKVFETDDPNHF 98 (163)
T ss_dssp HHHHHHHHHTCCGGGGGGGGGGEEEEEEEEESSCSSSSCEEEESHHHHHHHHHHHHHHSTT--CEEEEEEEEEBSSTTEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCCcccceeeEECCCCCcceecHHHHHHHHHHHHhhCCC--ceeeeEEEEEcCCCCEE
Confidence 3567899998888899999999999987 542 2443 789999999887644 112 34555566663222345
Q ss_pred EEEEEEEEEe
Q 034293 79 LVFVSDVPFD 88 (99)
Q Consensus 79 li~V~G~~~~ 88 (99)
++-..|.-+.
T Consensus 99 vvE~~~~g~i 108 (163)
T 3ff0_A 99 WVECDGHGKI 108 (163)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 5555554443
No 70
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}
Probab=93.21 E-value=0.42 Score=30.62 Aligned_cols=61 Identities=10% Similarity=0.131 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhHcc-ChhhhhccccCCceEEEcC-cccccHHHHHHHHhcCC--CCceeEEEEEe
Q 034293 7 AKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG-QKIQGSQNIVAKLTSLP--FQQCQHSITTV 67 (99)
Q Consensus 7 g~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g-~~~~G~~~I~~~l~~l~--~~~~~~~i~s~ 67 (99)
-.+.+++||..+++ +.+.+..+|.++..+...+ ....|.+++.+.+..+. |...++.|..+
T Consensus 36 n~~~v~~~~~a~~~~d~~~l~~~~a~D~v~~~p~~g~~~G~e~~~~~~~~~~~~~pd~~~~i~~~ 100 (159)
T 3k0z_A 36 MVHAAQRFYAFWDTGKEELIPQTVTENFFDHTLPKGRPQGTEGLKFAAQNFRKIVPNIHCEIEDL 100 (159)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHEEEEEEESSCCTTCCSSHHHHHHHHHHHHTTCCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHcCCCeEEecCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 46789999999985 7899999999987654422 36789999988876432 33666666543
No 71
>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28
Probab=92.99 E-value=0.37 Score=31.85 Aligned_cols=68 Identities=12% Similarity=0.253 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc---C------cccccHHHHHHHHhcC-C----CCceeEEEEEee
Q 034293 4 DSVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE---G------QKIQGSQNIVAKLTSL-P----FQQCQHSITTVD 68 (99)
Q Consensus 4 ~~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~---g------~~~~G~~~I~~~l~~l-~----~~~~~~~i~s~D 68 (99)
...-.+++..|...+|. +.+.+..+|.+++.+.+. | ..+.|.++|.+.+... + +..+.|.+....
T Consensus 25 ~~~I~~l~~~y~~~~D~~d~d~~~~lFt~D~~~~~~~~~Gg~~g~~~~~~Gr~aI~~~~~~~~~~~~~~~~t~H~~~n~~ 104 (179)
T 3ejv_A 25 ETIILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAPI 104 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhcCCceEEEEeccCCCcCCCcceecCHHHHHHHHHHhhcccccccceEEEcCCCE
Confidence 34456788999999995 779999999999988764 3 2678999999998653 2 346778877666
Q ss_pred eee
Q 034293 69 CQP 71 (99)
Q Consensus 69 ~q~ 71 (99)
...
T Consensus 105 I~v 107 (179)
T 3ejv_A 105 IVI 107 (179)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 72
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Probab=92.98 E-value=0.23 Score=30.96 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=45.0
Q ss_pred HHHHHHHHHH-hHcc-C--hhhhhccccCCceEEEcC-cccccHHHHHHHHhcCC--CCceeEEEEEe
Q 034293 7 AKAFVEHYYT-TFDA-N--RTGLANLYQEGSMLTFEG-QKIQGSQNIVAKLTSLP--FQQCQHSITTV 67 (99)
Q Consensus 7 g~~Fv~~YY~-~l~~-~--r~~L~~fY~~~S~l~~~g-~~~~G~~~I~~~l~~l~--~~~~~~~i~s~ 67 (99)
-.+.|+.||. .++. + .+.+..+|.++..+..++ ....|.+++.+.+..+. |...++.|..+
T Consensus 11 n~~~v~~~~~~~~~~~d~~~~~~~~~~a~d~~~~~~~~~~~~G~~~~~~~~~~~~~~~pd~~~~i~~~ 78 (146)
T 3kkg_A 11 NVETVLRLFDEGWGAQDGWRDVWRETMTPGFRSIFHSNQAVEGIEQAIAFNAVLFEGFPRLEVVVENV 78 (146)
T ss_dssp HHHHHHGGGTTTSTTSTTHHHHHHHHEEEEEEEEETTSCCEESHHHHHHHHHHHHHHSTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHcCCCeEEecCCCCCCCCHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 4678999999 7874 6 789999999998877665 37889999988776532 22666666544
No 73
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28
Probab=92.88 E-value=0.096 Score=33.29 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcC-cccccHHHHHHHHhcC--CCCceeEEEEEeeeee
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG-QKIQGSQNIVAKLTSL--PFQQCQHSITTVDCQP 71 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g-~~~~G~~~I~~~l~~l--~~~~~~~~i~s~D~q~ 71 (99)
.-..++..|...+|. +.+.+..+|.+++.+.+.+ ....|.++|.+.+..+ ++..+.|.+..+....
T Consensus 12 ~I~~l~~ry~~~~D~~d~~~~~~lFt~D~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~n~~I~~ 81 (150)
T 3ef8_A 12 AIERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPNFGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDF 81 (150)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEETTEEEESHHHHHHHTTTHHHHEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhccCceEEEccCCCCCCCHHHHHHHHHHhhcccCceEEecCCEEEEE
Confidence 345788999999995 6799999999999987744 3578999999988765 2346788877766544
No 74
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=92.83 E-value=0.088 Score=33.40 Aligned_cols=49 Identities=12% Similarity=0.233 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCc-----ccccHHHHHHHHhcC
Q 034293 7 AKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ-----KIQGSQNIVAKLTSL 55 (99)
Q Consensus 7 g~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~-----~~~G~~~I~~~l~~l 55 (99)
..+.|++||..+++ +.+.|..+|.++..+...|. ++.|+++|.+.+..+
T Consensus 22 n~~~v~~~~~a~~~gD~~~l~~l~a~D~v~~~p~~~~~~g~~~G~~~v~~~~~~~ 76 (148)
T 3g8z_A 22 TIDIAKSYITAIQTGDHATLGSIISPDVIWHQPGNHQFSGTHRGMAVVGPMLGKM 76 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEcCCCCCCCceEcCHHHHHHHHHHH
Confidence 35678999998874 78999999999998887765 368999998887654
No 75
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*
Probab=92.50 E-value=0.32 Score=30.76 Aligned_cols=61 Identities=10% Similarity=0.104 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCcc--cccHHHHHHHHhcCC--CC-ceeEEEEE
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQK--IQGSQNIVAKLTSLP--FQ-QCQHSITT 66 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~~--~~G~~~I~~~l~~l~--~~-~~~~~i~s 66 (99)
-..+.|+.||..+++ +.+.+..+|.++..+...+.. ..|.++|.+.+..+. |. ..++.|..
T Consensus 12 ~~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~p~~~~~~~G~~~~~~~~~~~~~~~p~d~~~~i~~ 78 (153)
T 2f99_A 12 EQIAAVRRMVEAYNTGKTDDVADYIHPEYMNPGTLEFTSLRGPELFAINVAWVKKTFSEEARLEEVG 78 (153)
T ss_dssp HHHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGTTTCCCCHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhcCCCeEEecCCCCCCCCCHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence 346788999999974 678999999998665433333 589999988887642 33 44455544
No 76
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0
Probab=92.32 E-value=0.076 Score=32.58 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=37.5
Q ss_pred HHHHHHHHHhHcc-ChhhhhccccCCceEEEcC-c----ccccHHHHHH-HHhcCC
Q 034293 8 KAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG-Q----KIQGSQNIVA-KLTSLP 56 (99)
Q Consensus 8 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g-~----~~~G~~~I~~-~l~~l~ 56 (99)
.+.|+.||..+++ +.+.+..+|.++..+...| . ...|.++|.+ .+..+.
T Consensus 7 ~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~~~~~~~~~~~ 62 (134)
T 3grd_A 7 LEIIRSTYEGSASSNAKHLAEALSEKVEWTEAEGFPYGGTYIGVEAIMENVFSRLG 62 (134)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHEEEEEEEEECTTSTTCEEEESHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCCCeEEEecCCcccCcEEeCHHHHHHHHHHHHH
Confidence 4678899988874 6789999999999876654 2 4689999974 665543
No 77
>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=91.96 E-value=0.39 Score=29.55 Aligned_cols=59 Identities=7% Similarity=0.115 Sum_probs=41.1
Q ss_pred HHHHHHHHHhHcc-ChhhhhccccCCceEEEcCc-c-cccHHHHHHHHhcCC--CC-ceeEEEEE
Q 034293 8 KAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ-K-IQGSQNIVAKLTSLP--FQ-QCQHSITT 66 (99)
Q Consensus 8 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~-~-~~G~~~I~~~l~~l~--~~-~~~~~i~s 66 (99)
.+.+++||..+++ +.+.+..+|.++..+...+. . ..|.++|.+.+..+. |. ..+++|..
T Consensus 5 ~~~v~~~~~a~~~~d~~~~~~~~a~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~i~~ 69 (144)
T 1sjw_A 5 TEIVRRMVSAFNTGRTDDVDEYIHPDYLNPATLEHGIHTGPKAFAQLVGWVRATFSEEARLEEVR 69 (144)
T ss_dssp HHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGGGGTCCSHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHHcCcCeEEccCCCCCCCCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 5678899998874 67899999999976543332 2 389999988887653 33 44455544
No 78
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=91.72 E-value=0.24 Score=32.60 Aligned_cols=52 Identities=10% Similarity=0.283 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcC----cccccHHHHHHHHhcCC
Q 034293 5 SVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG----QKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g----~~~~G~~~I~~~l~~l~ 56 (99)
....+.|++||..+++ +.+.|..++.++..+-.++ ....|+++|.+.|..+.
T Consensus 10 ~~~~~~v~ry~~A~n~gD~d~l~~l~aeD~v~~~p~~~p~~~~~Greai~~~f~~~~ 66 (156)
T 3g16_A 10 AAMEKVIRTYYDGCNEADEAKMIACFVPEAVHYFPAGMYGGAFRGAAQIAHRWRTAV 66 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECBTTSTTSCEESHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEecCCCCCCCCccCHHHHHHHHHHHH
Confidence 4577889999999985 7899999999998887643 45789999999997654
No 79
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=91.31 E-value=0.28 Score=31.68 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc--CcccccHHHHHHHHhcC
Q 034293 5 SVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE--GQKIQGSQNIVAKLTSL 55 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~--g~~~~G~~~I~~~l~~l 55 (99)
.....+++.|+..+.+ +.+.|..+|.++..+.-. .+++.|.++|.++|..+
T Consensus 20 ~~~~~~l~~f~~a~~~gD~~aL~~LlA~Dvv~~~P~~~~~~~G~~av~~~~~~~ 73 (148)
T 3f8x_A 20 AAVQSGLQEWHRIIAEADWERLPDLLAEDVVFSNPSTFDPYHGKGPLMVILPAV 73 (148)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGSGGGEEEEEEEECSSCSSCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhCCCEEEECCCCCCCcCCHHHHHHHHHHH
Confidence 5667899999999985 789999999999988743 46789999999998764
No 80
>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18
Probab=90.84 E-value=1.9 Score=26.84 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=42.8
Q ss_pred HHHHHHHHhHc-cChhhhhccccCCce-EEE-cCcccccHHHHHHHHhcCCCCceeEEEEEeeeee
Q 034293 9 AFVEHYYTTFD-ANRTGLANLYQEGSM-LTF-EGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQP 71 (99)
Q Consensus 9 ~Fv~~YY~~l~-~~r~~L~~fY~~~S~-l~~-~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~ 71 (99)
+....||..|+ ++.+.|-.+|.++.. +.. .|....|.++|..+...++-...++.+.....+.
T Consensus 15 ~~~~~y~~Al~~~D~~~L~~lf~~d~~~v~~~~g~~l~G~~~I~a~r~~~~~~~~~~~~~~~~i~~ 80 (129)
T 2owp_A 15 AAFVEYERALVENDIEAMNALFWHTPETVRYGIAEVQHGGEAIRAWRERCEPVPKSRKLHRTVVTT 80 (129)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTBCCSTTCEEECSSCEEESHHHHHHHHHHSCCCCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhccCCCcEEEeCCCCccCCHHHHHHHHHhcCCCCCceeecccEEEE
Confidence 44566777776 688999999999986 434 4567899999999777665212344444444444
No 81
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=90.79 E-value=2.4 Score=28.04 Aligned_cols=79 Identities=11% Similarity=0.160 Sum_probs=50.8
Q ss_pred HHHHHHHHHhHc-cChhhhhccccCCc-----------------eEEEc-CcccccHHHHHHHHhcC-C-CCceeEEEEE
Q 034293 8 KAFVEHYYTTFD-ANRTGLANLYQEGS-----------------MLTFE-GQKIQGSQNIVAKLTSL-P-FQQCQHSITT 66 (99)
Q Consensus 8 ~~Fv~~YY~~l~-~~r~~L~~fY~~~S-----------------~l~~~-g~~~~G~~~I~~~l~~l-~-~~~~~~~i~s 66 (99)
.+....||..|. .+.+.|..+|.++. ...+. |..+.|.++|.+.|..+ . ....++.+..
T Consensus 15 ~~~~~~~~~A~~~gD~~~l~alwa~d~~~~~~~~~~~~~~~~~v~~v~Pg~~~l~G~~~I~~~~~~~f~~~~~~~~~~~d 94 (170)
T 3cnx_A 15 GLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVLSGRGEVLRSYALIMANTEYIQFFLTD 94 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTCCEEEHHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhcCCcccccccccccccccccEEEEcCCCccccCHHHHHHHHHHHHccCCeeEEEEEE
Confidence 456788998887 57899999999984 33444 46799999998877542 1 1134555555
Q ss_pred eeeeeeCCCCCEEEEEEEEEEe
Q 034293 67 VDCQPSGPAGGMLVFVSDVPFD 88 (99)
Q Consensus 67 ~D~q~~~~~~~ili~V~G~~~~ 88 (99)
+..... ++..++.+...+..
T Consensus 95 v~v~~~--gD~A~v~~~~~~~~ 114 (170)
T 3cnx_A 95 VHVSVT--GDTALVTCTENILS 114 (170)
T ss_dssp EEEEEE--TTEEEEEEEEEEEE
T ss_pred EEEEEe--CCEEEEEEEEEEec
Confidence 554442 34445555555553
No 82
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}
Probab=90.74 E-value=1.3 Score=27.90 Aligned_cols=49 Identities=4% Similarity=-0.012 Sum_probs=37.0
Q ss_pred HHHHHHHHHhHccCh--hhhhccccCCceEEEcCc----ccccHHHHHHHHhcCC
Q 034293 8 KAFVEHYYTTFDANR--TGLANLYQEGSMLTFEGQ----KIQGSQNIVAKLTSLP 56 (99)
Q Consensus 8 ~~Fv~~YY~~l~~~r--~~L~~fY~~~S~l~~~g~----~~~G~~~I~~~l~~l~ 56 (99)
.+-+++||..+.+.. +.|..+|.++..+.-... ...|+++|.+++..+.
T Consensus 23 kevv~r~~e~~~~gd~~~~l~~lya~D~v~~dp~~~~~~~~~G~eai~~~~~~~~ 77 (136)
T 3hk4_A 23 AEIAKDFTELLKQGDNAGAAEKYNADDIASYEAMEGPMAVSHGKEALRQKSQWWQ 77 (136)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHEEEEEEEECSSCSTTSEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHCCCCEEEEcCCCCCccccCCHHHHHHHHHHHH
Confidence 456778888887654 457999999998876421 4789999999887554
No 83
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}
Probab=90.44 E-value=0.47 Score=30.23 Aligned_cols=61 Identities=8% Similarity=0.131 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHH-hHc-cChhhhhccccCCceEEEcCcccccHHHHHHHHhcCC--CCceeEEEEE
Q 034293 5 SVAKAFVEHYYT-TFD-ANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLP--FQQCQHSITT 66 (99)
Q Consensus 5 ~ig~~Fv~~YY~-~l~-~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~--~~~~~~~i~s 66 (99)
+--.+.|+.||. .++ .+.+.+..+|.++... ++-....|.+++.+.+..+. +...++.|..
T Consensus 27 ~~nk~lV~~f~~~a~~~~D~~~~~~~~a~D~v~-h~P~~~~G~e~~~~~~~~~~~~~pd~~~~i~~ 91 (148)
T 3g0k_A 27 QANHDLVIEMYNKVLIAMDSSAVDRYIAPGYVQ-HSSLAEPSVEALKGFLDRVRAESPDARQTIHR 91 (148)
T ss_dssp HHHHHHHHHHHHHTTTTTCGGGGGGTEEEEEEE-CCSSSCSSHHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHhcCcCeEE-cCCCCCCCHHHHHHHHHHHHHhCCCceEEEEE
Confidence 445678999999 776 5778999999988443 33234589999888776542 2255555544
No 84
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25
Probab=90.28 E-value=2.1 Score=26.49 Aligned_cols=65 Identities=8% Similarity=0.075 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEcCcccccHHHHHHHHhcC----CCCceeEEEEEeeeee
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSL----PFQQCQHSITTVDCQP 71 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l----~~~~~~~~i~s~D~q~ 71 (99)
.-.+|+..|...+|. +.+.+..+|.+++.+.....+..|.++|.+.+... + ..+.|.|..+-...
T Consensus 11 ~I~~l~~rya~~lD~~d~~~~~~lft~Da~~~~~~g~~~g~~~i~~~~~~~~~~~~-~~t~H~i~n~~i~~ 80 (144)
T 2rgq_A 11 EIMELAARFEMSLDKEDVENYLATFASDGALQGFWGIAKGKEELRQGFYAMLDTFA-RGKRHCSSNAIIQG 80 (144)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETTEEEESHHHHHHHHHHHHHHTT-TTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhhccCcEEEEcCCCCCCCHHHHHHHHHHHHhhCC-CCcEEecCCeEEEE
Confidence 567899999999995 67999999999998876522458999998887642 2 24788887766543
No 85
>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12
Probab=87.19 E-value=3 Score=25.74 Aligned_cols=76 Identities=8% Similarity=-0.005 Sum_probs=49.3
Q ss_pred HHHHHHHHHhHcc--ChhhhhccccCCceEEEcCcccccHHHHHHHHhcCC--CCceeEEEEEeeeeeeCCCCCEEEEEE
Q 034293 8 KAFVEHYYTTFDA--NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLP--FQQCQHSITTVDCQPSGPAGGMLVFVS 83 (99)
Q Consensus 8 ~~Fv~~YY~~l~~--~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~--~~~~~~~i~s~D~q~~~~~~~ili~V~ 83 (99)
..+++.++..... +-+.|...|.|+..|...+-...|.+++.+.|...- ++.....|..+..-.. .++++++.-.
T Consensus 13 ~~~ie~W~~~~~~~~dl~~l~a~~a~d~~mv~p~G~~~g~~~~~~~~~~~~g~~pgl~i~i~~l~~~~~-~~d~~vv~y~ 91 (128)
T 1tp6_A 13 HVAIRDWLAGDSRADALDALMARFAEDFSMVTPHGVVLDKTALGELFRSKGGTRPGLRIEIDGESLLAS-GVDGATLAYR 91 (128)
T ss_dssp HHHHHHHHHTCCCTTHHHHHHTTEEEEEEEECTTSCEEEHHHHHHHHHHHTTCSTTCEEEEEEEEEEEE-ETTEEEEEEE
T ss_pred HHHHHHHHcCCCcHhHHHHHHHhcCCCEEEECCCCeECCHHHHHHHHHHhhCCCCCeEEEEEEEEEEee-cCCEEEEEEE
Confidence 3455555554443 467888999999999876557889999999887643 2355666666555332 3455666544
Q ss_pred E
Q 034293 84 D 84 (99)
Q Consensus 84 G 84 (99)
+
T Consensus 92 ~ 92 (128)
T 1tp6_A 92 E 92 (128)
T ss_dssp E
T ss_pred E
Confidence 3
No 86
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=86.37 E-value=2.8 Score=25.83 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhHc-cChhhhhccccCCceEE--EcCc-cc-ccHHHHHHHHhc-CCCCceeEEEEEeeeee
Q 034293 7 AKAFVEHYYTTFD-ANRTGLANLYQEGSMLT--FEGQ-KI-QGSQNIVAKLTS-LPFQQCQHSITTVDCQP 71 (99)
Q Consensus 7 g~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~--~~g~-~~-~G~~~I~~~l~~-l~~~~~~~~i~s~D~q~ 71 (99)
-.+-++.|+..++ .+.+.|.+.|+|++.+. .+|. .. ...++..+.+.+ -|....++.|.++|...
T Consensus 14 I~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~~G~~l~~~~~~e~~~~v~~~~p~~~~~~~I~~I~i~g 84 (125)
T 3duk_A 14 ITEVLNVYMNAAESGTGEEMSAAFHKDATIFGYVGDKLAFNGPIKDLYDWHNSNGPAKNVQSRITNIDIVG 84 (125)
T ss_dssp HHHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEETTEEEEEEETHHHHHHHHHHCCCTTCEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEcCCCEEeeCCHHHHHHHHhccCCCCcccceEEEEEEEC
Confidence 3455899999998 47899999999999885 3565 22 245565555543 45457888998888643
No 87
>3lyg_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE GOL; 1.61A {Colwellia psychrerythraea}
Probab=85.77 E-value=1.4 Score=27.90 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=38.8
Q ss_pred HHHHHHHhHc-cChhhhhccccCCceEEEcC--cccccHHHHHH----HHhcCC
Q 034293 10 FVEHYYTTFD-ANRTGLANLYQEGSMLTFEG--QKIQGSQNIVA----KLTSLP 56 (99)
Q Consensus 10 Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~~g--~~~~G~~~I~~----~l~~l~ 56 (99)
-|+.=.+.+. .+-+.|...|.+++.+.|.| ..+.|++++.+ .+..||
T Consensus 7 iVqrlW~al~AgD~D~l~adyaeDaV~i~P~sa~vl~GR~~~r~a~~~L~~~lP 60 (120)
T 3lyg_A 7 IVQRGWEALGAGDFDTLVTDYVEKMIFIMPGQADVLKGRQAFRSALDNLGEILP 60 (120)
T ss_dssp HHHHHHHHHHHTCHHHHGGGEEEEEEEECSSTTCEEESHHHHHHHHTTHHHHSC
T ss_pred HHHHHHHHHhcCCHHHHHHhcccCeEEEccCccceeecHHHHHHHHHHHHhhCC
Confidence 3566667776 47899999999999999994 57999999999 666677
No 88
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=84.90 E-value=4.7 Score=24.37 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=39.8
Q ss_pred HHHHHHHhHc-cChhhhhccccCCceEE--EcCcccccHHHHHHHHh-cCCCCceeEEEEEeeeee
Q 034293 10 FVEHYYTTFD-ANRTGLANLYQEGSMLT--FEGQKIQGSQNIVAKLT-SLPFQQCQHSITTVDCQP 71 (99)
Q Consensus 10 Fv~~YY~~l~-~~r~~L~~fY~~~S~l~--~~g~~~~G~~~I~~~l~-~l~~~~~~~~i~s~D~q~ 71 (99)
-+..|-..|+ .+.+.|..+|.+++.+. ..|....|.++|.+ +. .++-...+..+..+....
T Consensus 19 ~~~~y~~A~~~~D~~~l~~lf~~d~~~~~~~~~~~~~G~~~i~~-~~~~~~~~~~~~~~~~~~~~~ 83 (129)
T 2rcd_A 19 AFYRYEKALTGNDVAVLDELFWHDEKTVRYGAGENLYGIEEIRA-FRLARPSAGLDRALRNTVITT 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHBCCSTTCEEEETTEEEESHHHHHH-HHHHSCCTTCCCEEEEEEEEE
T ss_pred HHHHHHHHHhcCCHHHHHHhccCCCCEEEECCCCccCCHHHHHH-HHHhcCCCCCceEEEEEEEEE
Confidence 3445557776 58899999999997433 35678899999999 64 455222344444444444
No 89
>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}
Probab=84.19 E-value=1.1 Score=29.25 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=40.0
Q ss_pred HHHHHHHHHhHcc-ChhhhhccccCCceEEEc--CcccccHHHHHHHHhcC
Q 034293 8 KAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE--GQKIQGSQNIVAKLTSL 55 (99)
Q Consensus 8 ~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~--g~~~~G~~~I~~~l~~l 55 (99)
..+++.|+..+.+ +.+.|..+|.++..+.-. ..++.|.+++..+|..+
T Consensus 21 ~~~v~~f~~A~~~gD~~aL~~LlA~Dvv~~sP~~~~p~~Gr~av~~~l~~~ 71 (155)
T 3flj_A 21 HPTIARMQEVVAKGDESLIHALLAEDVRFMPPTYYKTWTGRDPVAAVLGHV 71 (155)
T ss_dssp CHHHHHHHHHHTTTCHHHHHTTEEEEEEEECSSSSCCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHhcCCCEEEECCCCCCCcCCHHHHHHHHHHH
Confidence 3578999999985 789999999999988743 56899999999988753
No 90
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=80.82 E-value=6 Score=23.96 Aligned_cols=64 Identities=9% Similarity=0.137 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEE---cCc-ccccHHHHHHHHhcC--CCCceeEEEEEeee
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTF---EGQ-KIQGSQNIVAKLTSL--PFQQCQHSITTVDC 69 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~---~g~-~~~G~~~I~~~l~~l--~~~~~~~~i~s~D~ 69 (99)
.-.+-+..|...++. +.+.|.+.|+|++.+.. +|. .....++..+.+.+- |.....+.|.+++.
T Consensus 13 aI~~~~~~y~~a~~~~D~~~l~~~f~~da~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~i 83 (128)
T 3blz_A 13 AIVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDNKLTGGPIQGLFDVIDNVFHPSPEAKAAIARIDI 83 (128)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTTSCEEEEETHHHHHHHHHTCCCCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEEeCCCcEEecCHHHHHHHHHhcCCCCccccCeEEEEEE
Confidence 445678999999984 78999999999998854 232 223355665555443 33356677766654
No 91
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=77.36 E-value=1.4 Score=29.26 Aligned_cols=44 Identities=9% Similarity=0.066 Sum_probs=34.6
Q ss_pred HHHHHHhHcc-ChhhhhccccCCceEEEcCcccccHHHHHHHHhc
Q 034293 11 VEHYYTTFDA-NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTS 54 (99)
Q Consensus 11 v~~YY~~l~~-~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~ 54 (99)
|+-=-...++ +|+.+..-|.++|...--..-+.|.++|.++|..
T Consensus 23 Vr~AEDaWNsrdP~rValAYT~Ds~WRNR~eF~~GR~eI~~FLtr 67 (166)
T 2imj_A 23 IRLAEDGWNSRDPERVSLAYTLDTQWRNRAEFAHNREEAKAFLTR 67 (166)
T ss_dssp HHHHHHHHTTTCHHHHHTTEEEEEEEEETTEEECSHHHHHHHHHH
T ss_pred HHHHHhhhcccChHHHhhccCCCCceeccccccCcHHHHHHHHHH
Confidence 4444456664 7999999999999865556779999999999865
No 92
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=71.91 E-value=15 Score=22.83 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=33.6
Q ss_pred HHHHHHHHHhHc-cChhhhhccccCCc--eEEEcCcccccHHHHHHHHhc
Q 034293 8 KAFVEHYYTTFD-ANRTGLANLYQEGS--MLTFEGQKIQGSQNIVAKLTS 54 (99)
Q Consensus 8 ~~Fv~~YY~~l~-~~r~~L~~fY~~~S--~l~~~g~~~~G~~~I~~~l~~ 54 (99)
.+...+|+..|+ ++.+.|..+|.++. .+...+-...|.++|.+.+.+
T Consensus 13 ~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~~g~~~G~~~i~~~~~~ 62 (145)
T 3soy_A 13 TEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRGHERGWSQIAENFYG 62 (145)
T ss_dssp HHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEETTEEEESHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcCCCcccCHHHHHHHHHH
Confidence 344566776665 68999999998764 333333457999999888864
No 93
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=64.96 E-value=20 Score=21.57 Aligned_cols=65 Identities=8% Similarity=0.088 Sum_probs=39.7
Q ss_pred HHHHHHHHHhHc-cChhhhhccccCCceEEEcCcccccHHHHHHHHhcCCCCceeEEEEEeeeeee
Q 034293 8 KAFVEHYYTTFD-ANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPS 72 (99)
Q Consensus 8 ~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~ 72 (99)
.+..++|+..+. .+.+.|..++.|+..+.+.+-...+.++..+.+.+-..+..+..+.....+..
T Consensus 17 ~~l~~~~~~A~~~~D~~~l~~L~~~d~~~v~~~G~~~~~~~~l~~~~~g~~~~~~~~~~~~~v~~~ 82 (134)
T 3fsd_A 17 AFYEERLRAAMLTGDLKGLETLLADDLAFVDHTGCVKTKQTHLEPYRAGLLKLSRLDLSDAVVRAA 82 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECTTSCEECHHHHHHHHHTTCEEEEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHhCCHHHHHhhcCCCEEEECCCCcCccHHHHHHHHHcCCceEEEEEEeccEEEEe
Confidence 345677777665 68999999999998777643333455555555554221123445555566663
No 94
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=63.82 E-value=6.3 Score=24.81 Aligned_cols=52 Identities=12% Similarity=0.225 Sum_probs=37.7
Q ss_pred ccChhhhhccccCCceEEEc---CcccccHHHHHHHHhcCCCC-ceeEEEEEeeeee
Q 034293 19 DANRTGLANLYQEGSMLTFE---GQKIQGSQNIVAKLTSLPFQ-QCQHSITTVDCQP 71 (99)
Q Consensus 19 ~~~r~~L~~fY~~~S~l~~~---g~~~~G~~~I~~~l~~l~~~-~~~~~i~s~D~q~ 71 (99)
..+.+.+..+|.|+.++ ++ ++.+.|.+++..+|..+.-+ .+.++|.....|.
T Consensus 29 ~gD~~~~~~lyapDvt~-fDp~~~~~~~G~~a~r~yf~~~~~~~~~~~ei~~p~V~v 84 (134)
T 3ke7_A 29 STDPMAFVELSDTDVIY-FDPSLETKIEGLEQLRTYYKGMQLPPADHFDMIRPVVQV 84 (134)
T ss_dssp CSCTTHHHHHEEEEEEE-ECTTCSSCEESHHHHHHHHHHHCCCCCSEEEEEEEEEEE
T ss_pred CCCHHHHHHhcCCCEEE-EcCCCccccCCHHHHHHHHHhcccCCcceEEEeCCeEEE
Confidence 46899999999999774 33 35789999999999885422 2456676655555
No 95
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=62.97 E-value=25 Score=21.99 Aligned_cols=66 Identities=8% Similarity=-0.014 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhHc-cChhhhhccccCCceEE-E--cCcccccHHHHHHHHhcCCCCceeEEEEEeeeeee
Q 034293 7 AKAFVEHYYTTFD-ANRTGLANLYQEGSMLT-F--EGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPS 72 (99)
Q Consensus 7 g~~Fv~~YY~~l~-~~r~~L~~fY~~~S~l~-~--~g~~~~G~~~I~~~l~~l~~~~~~~~i~s~D~q~~ 72 (99)
-.+.++++...+. .+.+.+.++|.|+-++- + .|+.+.|.+.+...+...+.+.....+.....+..
T Consensus 14 I~~~~~~~~~Ai~~gD~~~~~~l~~~dv~~Fd~~~~g~~~~g~~~~r~~f~~~~~~~~~~~~~~~~V~~~ 83 (143)
T 2f86_B 14 IVRVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALGNLIEGIEFHRFYFDGNRKNQVHTTMLNPNVHII 83 (143)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTCCEETTHHHHTTSSSCSCCSCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHccCHHHHHHhcCCCEEEEccCcCCccccCHHHHHHHHhcccCCcceeEEEcceEEEe
Confidence 3467888998887 58899999999886653 3 57789999998866544222244556666666664
No 96
>4gb5_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, snoal-like domain, unknown function; HET: PGE; 1.55A {Kribbella flavida}
Probab=50.71 E-value=40 Score=20.68 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhHccC-hhhhh-ccccCCceEEEc---C--cccccHHHHHHHHhc--CCCCceeEEEEEeee
Q 034293 7 AKAFVEHYYTTFDAN-RTGLA-NLYQEGSMLTFE---G--QKIQGSQNIVAKLTS--LPFQQCQHSITTVDC 69 (99)
Q Consensus 7 g~~Fv~~YY~~l~~~-r~~L~-~fY~~~S~l~~~---g--~~~~G~~~I~~~l~~--l~~~~~~~~i~s~D~ 69 (99)
-.+.+..|-..+|.. .+.|. .+|.+++.+-+. | ....|.++|.+.+.. -++..+.|.+.....
T Consensus 13 I~~L~~rY~~~~D~~d~~~l~~~~ft~Da~~d~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~t~H~~~n~~I 84 (159)
T 4gb5_A 13 IIELFGRYADIADLKEFTDLPRRVHTDPLTIDFESVTGMPPMTVPLSDYGAALRASFGAFSATHHAITGHVV 84 (159)
T ss_dssp HHHHHHHHHHHHHTTCCSSHHHHHEEEEEEEECHHHHCCCCEEECHHHHHHHHHHHHTTCSEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhhCcCCEEEEecCCCCCcccccHHHHHHHHHHHhccCCceEEEecCCceE
Confidence 346788999999965 47774 799999988763 2 346789999887754 234477887665443
No 97
>2b1x_B Naphthalene dioxygenase small subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: d.17.4.4 PDB: 2b24_B
Probab=45.88 E-value=40 Score=21.29 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc---C-----------cc---cccHHHHHHHHhc---------CCC
Q 034293 5 SVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE---G-----------QK---IQGSQNIVAKLTS---------LPF 57 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~---g-----------~~---~~G~~~I~~~l~~---------l~~ 57 (99)
.-..+|+-.|=..+|. +.+.+..+|.+++.+... + .. ..|.+.+.+.+.. .|.
T Consensus 13 ~~I~~ll~rya~~lD~~d~d~w~~lft~D~~y~~p~~~~~~~~~~~d~~~~~~~~~~~~~~l~~rv~~l~~~~~~~~~p~ 92 (172)
T 2b1x_B 13 REITEWLYMEAELLDAGKYREWLALVTEDLSYVVPIRVTREREAVTDVVEGMTHMDDDADSMEMRVLRLETEYAWAEDPP 92 (172)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEEEECCCCTTSSCCEEEEEEEEEECHHHHHHHHHHHTSSCCGGGSSC
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHhccCCEEEEEEeecccccccccCCCcccEEEeCCHHHHHHHHHHHhcCcccccCCC
Confidence 4567899999999996 558999999999886431 1 11 1367777764432 356
Q ss_pred CceeEEEEEeeeee
Q 034293 58 QQCQHSITTVDCQP 71 (99)
Q Consensus 58 ~~~~~~i~s~D~q~ 71 (99)
..+.|.|..+-.-.
T Consensus 93 ~~t~H~i~n~~I~~ 106 (172)
T 2b1x_B 93 SRSRHFVTNVRVAT 106 (172)
T ss_dssp CEEEEEEEEEEEEE
T ss_pred CeEEEEecCEEEEE
Confidence 68899888777655
No 98
>4giw_A RUN and SH3 domain-containing protein 1; NGF-TRKA signaling pathway, NF-KB pathway, signaling protein; 2.00A {Homo sapiens}
Probab=43.77 E-value=6.5 Score=26.41 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=34.1
Q ss_pred HHHHHHHhHccChhhhhccccCCceEEE-cCcccccHHHHHHH---HhcCCCC
Q 034293 10 FVEHYYTTFDANRTGLANLYQEGSMLTF-EGQKIQGSQNIVAK---LTSLPFQ 58 (99)
Q Consensus 10 Fv~~YY~~l~~~r~~L~~fY~~~S~l~~-~g~~~~G~~~I~~~---l~~l~~~ 58 (99)
-+..|...+..+++-+.++|.+.|.|.- ++..-.+.+.|... |..+||.
T Consensus 132 ~L~~~l~~l~~~~~~l~~~Y~~~a~lr~s~~~~~~l~~~l~~~L~~L~~l~F~ 184 (198)
T 4giw_A 132 QLELWFSSLQEDAGLLSLMYMPTGFFSLARGGCPSLSTELLLLLQPLSVLTFH 184 (198)
T ss_dssp CHHHHHHHHHTCHHHHHHHBCTTSHHHHTSSBTTBHHHHHHHHHGGGGGSCCB
T ss_pred HHHHHHHHHHhChHHHHHHcCCchHhhcccccChHHHHhhhccccccccccee
Confidence 3457888999999999999999998752 23233455555554 5566664
No 99
>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange, transferase; 2.00A {Mus musculus} SCOP: d.223.1.1
Probab=38.03 E-value=37 Score=20.20 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCCCceeEEEEE
Q 034293 45 SQNIVAKLTSLPFQQCQHSITT 66 (99)
Q Consensus 45 ~~~I~~~l~~l~~~~~~~~i~s 66 (99)
.+.|.++|..|| .+.-...+
T Consensus 63 P~~vrekL~~lp--~I~~~L~~ 82 (88)
T 1mby_A 63 PEYIKQKLQLLS--SILLMFSN 82 (88)
T ss_dssp CHHHHHHHTTTC--CEEEEECC
T ss_pred cHHHHHHHhhhH--HHHHHHhc
Confidence 567999999999 66555544
No 100
>3eby_A Beta subunit of A putative aromatic-ring-hydroxyl dioxygenase; YP_001165631.1; 1.75A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.4
Probab=35.30 E-value=56 Score=20.55 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhHcc-ChhhhhccccCCceEEEc-------Ccc-----cccHHHHHHHHhcC------CCCceeEEEEE
Q 034293 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE-------GQK-----IQGSQNIVAKLTSL------PFQQCQHSITT 66 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~-~r~~L~~fY~~~S~l~~~-------g~~-----~~G~~~I~~~l~~l------~~~~~~~~i~s 66 (99)
-.++|+-.|=..+|. +-+....+|.++..+... |.+ ..|...+.+.+..+ |...+.|-|..
T Consensus 15 ~I~~ll~rya~~lD~~d~d~w~~lft~D~~y~~p~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~~~~p~~rt~H~vsn 94 (163)
T 3eby_A 15 AIDDFNAAYGLCLDDDRLEQWPTLFVDDCLYQVIARENVDNGLPAAVMYCDSKGMLADRVVALRKANVFPEHFNRHLIGR 94 (163)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTGGGEEEEEEEEEEEGGGGGSSSCCEEEEESSHHHHHHHHHHHHHTC----CEEEEEECC
T ss_pred HHHHHHHHHHHHhccccHHHHHHhhcCCEEEEeeccccCCCCCCcEEEEcCCHHHHHHHHHHhhccCCCCCcceeEEEcC
Confidence 456799999999996 559999999999987652 211 24676676655432 33478887776
Q ss_pred eee
Q 034293 67 VDC 69 (99)
Q Consensus 67 ~D~ 69 (99)
+-.
T Consensus 95 ~~i 97 (163)
T 3eby_A 95 AVI 97 (163)
T ss_dssp CEE
T ss_pred EEE
Confidence 554
No 101
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=35.23 E-value=13 Score=19.95 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=14.8
Q ss_pred HHHHHHHHhHccChhhhh
Q 034293 9 AFVEHYYTTFDANRTGLA 26 (99)
Q Consensus 9 ~Fv~~YY~~l~~~r~~L~ 26 (99)
+|...|++.+...|+.|.
T Consensus 31 ~Faa~YF~~L~~~~~~~~ 48 (54)
T 2izy_A 31 DFAVEYFTRLREARRGLE 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHh
Confidence 689999999988777763
No 102
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=31.04 E-value=56 Score=19.64 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=24.5
Q ss_pred ccccHHHHHHHHhcCC-CCceeEEEEEeeeeee
Q 034293 41 KIQGSQNIVAKLTSLP-FQQCQHSITTVDCQPS 72 (99)
Q Consensus 41 ~~~G~~~I~~~l~~l~-~~~~~~~i~s~D~q~~ 72 (99)
.+...++.++.|.+|| |...+.+|+-+-.+|+
T Consensus 57 dv~s~~eLh~iL~~LPLfpym~i~VtpL~~HPs 89 (96)
T 1mli_A 57 DVPSVEALHDTLMQLPLFPYMDIEVDGLCRHPS 89 (96)
T ss_pred EcCCHHHHHHHHHhCCCCceEEEEEEEcccCCC
Confidence 3567889999999999 5556667777777774
No 103
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba oxygen binding, hexacoordinate, truncated, oxygen storage-T complex; HET: FLC HEM; 1.68A {Synechocystis SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A* 2hz3_A* 2hz2_A*
Probab=29.47 E-value=57 Score=19.46 Aligned_cols=25 Identities=8% Similarity=0.365 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhHccChhhhhccccC
Q 034293 6 VAKAFVEHYYTTFDANRTGLANLYQE 31 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~~r~~L~~fY~~ 31 (99)
....+|..||..+.++|+ |..++.+
T Consensus 13 ~i~~lv~~FY~~v~~dp~-l~~~F~~ 37 (124)
T 1s69_A 13 AVDLAVDKFYERVLQDDR-IKHFFAD 37 (124)
T ss_dssp HHHHHHHHHHHHHHTCTT-TGGGGTT
T ss_pred HHHHHHHHHHHHHHcChH-HHHHhCC
Confidence 456899999999998764 7777764
No 104
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=27.85 E-value=66 Score=19.13 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhHccChhhhhccccC
Q 034293 6 VAKAFVEHYYTTFDANRTGLANLYQE 31 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~~r~~L~~fY~~ 31 (99)
.-..+|..||..+.++|. |..+|.+
T Consensus 12 ~i~~lv~~FY~~v~~dp~-l~~~F~~ 36 (123)
T 2bmm_A 12 TFTRLARRFYEGVAADPV-LRPMYPE 36 (123)
T ss_dssp HHHHHHHHHHHHHHTCTT-TGGGSCC
T ss_pred HHHHHHHHHHHHHHhCHH-HHHhcCC
Confidence 456789999999998875 8888864
No 105
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=27.35 E-value=1.6 Score=25.17 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhHccCh
Q 034293 6 VAKAFVEHYYTTFDANR 22 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~~r 22 (99)
+|..|++.||..+|...
T Consensus 62 LGd~Fl~~~y~vfD~~~ 78 (87)
T 1b5f_B 62 LGDVFMRPYHTVFDYGN 78 (87)
T ss_dssp ECHHHHTTEEEEEETTT
T ss_pred echHHhccEEEEEECCC
Confidence 67899999999998543
No 106
>2dwk_A Protein RUFY3; RUN domain, effector, RAP2, bundle, protein binding, structural genomics, NPPSFA; 2.00A {Mus musculus} PDB: 2dwg_A 2cxf_A 2cxl_A
Probab=27.14 E-value=26 Score=23.09 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=29.5
Q ss_pred HHHHHHhHccChhhhhccccCCceEEEcCcccccHHHHHHHHhcCC
Q 034293 11 VEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLP 56 (99)
Q Consensus 11 v~~YY~~l~~~r~~L~~fY~~~S~l~~~g~~~~G~~~I~~~l~~l~ 56 (99)
+..|...+-.+++-+.+||.+.|.|.-+ . ...|...|..|.
T Consensus 119 L~~~l~~l~~~~~~l~~~Y~~~All~~~----e-~~~l~~~L~gL~ 159 (180)
T 2dwk_A 119 LSEYMKALINKKELLSEFYEVNALMMEE----E-GAIIAGLLVGLN 159 (180)
T ss_dssp HHHHHHHHHTCHHHHTTTBCTTSGGGSH----H-HHHHHHHGGGGG
T ss_pred HHHHHHHHHhChHHHHhhCCCCccccCc----c-HHHHHHHHhCcc
Confidence 3568888888999999999999987432 2 245666665554
No 107
>2gbw_B Biphenyl 2,3-dioxygenase beta subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_B* 2ckf_B
Probab=26.94 E-value=1.2e+02 Score=19.09 Aligned_cols=67 Identities=7% Similarity=0.008 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhHcc-Chhhhh-ccccCCceEEEc---C---------cc-------cccHHHHHHHHhc---------
Q 034293 5 SVAKAFVEHYYTTFDA-NRTGLA-NLYQEGSMLTFE---G---------QK-------IQGSQNIVAKLTS--------- 54 (99)
Q Consensus 5 ~ig~~Fv~~YY~~l~~-~r~~L~-~fY~~~S~l~~~---g---------~~-------~~G~~~I~~~l~~--------- 54 (99)
.-..+|+-.|=..+|. +.+.+. .+|.++..+... + -. ..|...+.+.+..
T Consensus 14 ~~I~~~l~rya~~lD~~d~d~w~~~lfteD~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~~~~~~ 93 (174)
T 2gbw_B 14 YDIEAHYRAEVRMFQTGQYREWLQGMVAEDIHYWMPIYEQRLTRDRRPDPTPDDAAIYNDDFGELKQRVERLYSGQVWME 93 (174)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTEEEEEEEEEECCCCCCTTCCCCCCCTTSCEEEEECHHHHHHHHHHTTTSCCGGG
T ss_pred HHHHHHHHHHHHHhccccHHHHHHhhccCCEEEEeeccccccccccccCCCcccceeEcCCHHHHHHHHHHHhcCCcccc
Confidence 3567899999999996 458889 999999887432 1 01 2456666665543
Q ss_pred CCCCceeEEEEEeeeee
Q 034293 55 LPFQQCQHSITTVDCQP 71 (99)
Q Consensus 55 l~~~~~~~~i~s~D~q~ 71 (99)
.|...+.|-|..+-.-.
T Consensus 94 ~p~~rt~H~isN~~i~~ 110 (174)
T 2gbw_B 94 DPPSKIRYFVSNVEAFE 110 (174)
T ss_dssp SSCCEEEEEEEEEEEEE
T ss_pred CCCCceEEEecCEEEEE
Confidence 34557889888776644
No 108
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=24.94 E-value=68 Score=19.30 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhHccChhhhhcccc
Q 034293 6 VAKAFVEHYYTTFDANRTGLANLYQ 30 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~~r~~L~~fY~ 30 (99)
.-..+|..||..+.+++. |..+|.
T Consensus 15 ~i~~lv~~FY~~v~~Dp~-l~~~F~ 38 (128)
T 2bkm_A 15 TVAKLVEAFYRRVAAHPD-LRPIFP 38 (128)
T ss_dssp HHHHHHHHHHHHHHHCTT-TGGGSC
T ss_pred HHHHHHHHHHHHHhcCHH-HHHHCc
Confidence 345789999999998875 888776
No 109
>1s2x_A CAG-Z; CAG pathogenicity island, type IV secretion system, unknown function; 1.90A {Helicobacter pylori} SCOP: a.47.3.1
Probab=23.97 E-value=46 Score=21.67 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHHHhHc
Q 034293 1 MDPDSVAKAFVEHYYTTFD 19 (99)
Q Consensus 1 m~~~~ig~~Fv~~YY~~l~ 19 (99)
-++.++-..|++.|-+.+.
T Consensus 29 ~nanevrdkfiqnyatslk 47 (206)
T 1s2x_A 29 RNANEVRDKFIQNYATSLK 47 (206)
T ss_dssp TTHHHHHHHHHHHHTGGGG
T ss_pred cchHHHHHHHHHHHHhhcc
Confidence 0788999999999988885
No 110
>1ux8_A YJBI protein; oxygen storage/transport, truncated hemoglobin, oxygen transport; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.1
Probab=22.91 E-value=72 Score=19.41 Aligned_cols=22 Identities=14% Similarity=0.465 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHccChhhhhcccc
Q 034293 8 KAFVEHYYTTFDANRTGLANLYQ 30 (99)
Q Consensus 8 ~~Fv~~YY~~l~~~r~~L~~fY~ 30 (99)
..+|..||..+.+++. |..+|.
T Consensus 18 ~~lv~~FY~~v~~Dp~-l~~~F~ 39 (132)
T 1ux8_A 18 SQLVDTFYERVASHPL-LKPIFP 39 (132)
T ss_dssp HHHHHHHHHHHHHCTT-TGGGSC
T ss_pred HHHHHHHHHHHHcChH-HHHHCc
Confidence 6899999999998875 888876
No 111
>3aq9_A Group 1 truncated hemoglobin; 2/2 fold hemoglobin, nitric oxide detoxification, oxygen BIN; HET: HEM; 1.74A {Tetrahymena pyriformis} PDB: 3aq5_A* 3aq6_A* 3aq8_A* 3aq7_A*
Probab=22.35 E-value=1.1e+02 Score=18.06 Aligned_cols=24 Identities=21% Similarity=0.402 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhHccChhhhhccccC
Q 034293 7 AKAFVEHYYTTFDANRTGLANLYQE 31 (99)
Q Consensus 7 g~~Fv~~YY~~l~~~r~~L~~fY~~ 31 (99)
-..+|..||..+.++| .|..+|.+
T Consensus 17 i~~lv~~FY~~v~~dp-~l~~~F~~ 40 (121)
T 3aq9_A 17 MKAAVPLFYKKVLADE-RVKHFFKN 40 (121)
T ss_dssp HHHHHHHHHHHHTTCT-TTGGGGTT
T ss_pred HHHHHHHHHHHHHcCH-HHHHhhCC
Confidence 4578999999998886 47777754
No 112
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=22.06 E-value=48 Score=21.14 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=12.6
Q ss_pred HHHHHHHHHhHccCh
Q 034293 8 KAFVEHYYTTFDANR 22 (99)
Q Consensus 8 ~~Fv~~YY~~l~~~r 22 (99)
-.|++.||..+...|
T Consensus 70 I~flR~fY~e~~~sP 84 (132)
T 1yx3_A 70 INFLREYYEEYQIAP 84 (132)
T ss_dssp HHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHCCCC
Confidence 479999999998754
No 113
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=21.67 E-value=1e+02 Score=18.09 Aligned_cols=25 Identities=16% Similarity=0.480 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhHccChhhhhccccC
Q 034293 6 VAKAFVEHYYTTFDANRTGLANLYQE 31 (99)
Q Consensus 6 ig~~Fv~~YY~~l~~~r~~L~~fY~~ 31 (99)
.-..+|..||..+.++| .|..+|.+
T Consensus 11 ~i~~lv~~FY~~v~~dp-~l~~~F~~ 35 (116)
T 1dlw_A 11 AVQAVTAQFYANIQADA-TVATFFNG 35 (116)
T ss_dssp HHHHHHHHHHHHHHTCT-TTGGGGTT
T ss_pred HHHHHHHHHHHHHHcCH-HHHHhcCC
Confidence 44678999999999886 47777764
No 114
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=21.65 E-value=50 Score=20.50 Aligned_cols=15 Identities=7% Similarity=0.479 Sum_probs=12.4
Q ss_pred HHHHHHHHHhHccCh
Q 034293 8 KAFVEHYYTTFDANR 22 (99)
Q Consensus 8 ~~Fv~~YY~~l~~~r 22 (99)
-.|+++||..+...|
T Consensus 54 I~flR~~Y~e~~~~P 68 (115)
T 1sau_A 54 IRYLRDYFIKYGVAP 68 (115)
T ss_dssp HHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHCCCC
Confidence 469999999998754
Done!