BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034296
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VK9|A Chain A, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|B Chain B, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|C Chain C, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|D Chain D, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
Length = 216
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 10 TESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPA-----DSFPNASRWYDSVSSH 64
+ L+ LD++L G+ Y++G LT D+ + A+V A + N RWY++V S
Sbjct: 132 VQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKS- 190
Query: 65 IAPSF 69
AP +
Sbjct: 191 TAPGY 195
>pdb|4FQU|A Chain A, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
pdb|4FQU|B Chain B, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
pdb|4FQU|C Chain C, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
pdb|4FQU|D Chain D, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
pdb|4FQU|E Chain E, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
pdb|4FQU|F Chain F, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
pdb|4FQU|G Chain G, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
pdb|4FQU|H Chain H, Glutathionyl-hydroquinone Reductase Pcpf Of Sphingobium
Chlorophenolicum
Length = 313
Score = 32.3 bits (72), Expect = 0.061, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 14 LKSLDQYLSGKSYISGNQLTKDDIKVYAAVL-------------VKPADSFPNASRWYDS 60
L L+++L+G+ ++ G++LT+ DI+++ ++ ++ +PN SR
Sbjct: 206 LDWLEEHLTGREWLVGDRLTEADIRLFPTLVRFDAIYHGHFKCNLRRIADYPNLSRLVGK 265
Query: 61 VSSH--IAPSFPGKAVGVRVDGKGAPVDAAAAKPV 93
++SH +AP+ + G V+ PV
Sbjct: 266 LASHERVAPTINLRHAKAHYYGSHPSVNPTGIVPV 300
>pdb|3PPU|A Chain A, Crystal Structure Of The Glutathione-S-Transferase Xi From
Phanerochaete Chrysosporium
pdb|3PPU|B Chain B, Crystal Structure Of The Glutathione-S-Transferase Xi From
Phanerochaete Chrysosporium
Length = 352
Score = 32.0 bits (71), Expect = 0.081, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 14/58 (24%)
Query: 14 LKSLDQYLSGKSYISGNQLTKDDIKVYAAV--------------LVKPADSFPNASRW 57
L L++ L G+ Y+ G QLT+ DI+++ + L D +PN RW
Sbjct: 245 LDRLEKXLEGQDYLIGGQLTEADIRLFVTIVRFDPVYVTHFKCNLRTIRDGYPNLHRW 302
>pdb|3R3E|A Chain A, The Glutathione Bound Structure Of Yqjg, A Glutathione
Transferase Homolog From Escherichia Coli K-12
pdb|3R3E|B Chain B, The Glutathione Bound Structure Of Yqjg, A Glutathione
Transferase Homolog From Escherichia Coli K-12
pdb|4G0I|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg Of Escherichia
Coli
pdb|4G0I|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg Of Escherichia
Coli
pdb|4G0K|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gs-menadione
pdb|4G0K|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gs-menadione
pdb|4G0L|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gsh
pdb|4G0L|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gsh
Length = 328
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 14 LKSLDQYLSGKSYISGNQLTKDDIKVYAAVL 44
L L+Q L Y++GNQLT+ DI+++ ++
Sbjct: 217 LARLEQILGQHRYLTGNQLTEADIRLWTTLV 247
>pdb|4HZ4|A Chain A, Crystal Structure Of Glutathione S-Transferase B4xh91
(Target Efi- 501787) From Actinobacillus
Pleuropneumoniae
Length = 217
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 21 LSGKSYISGNQLTKDDIKV-----YAAVLVKPADSFPNASRWYDSVSSH 64
L GK++I G QLT D + + V AD +PN +R+ + + +H
Sbjct: 144 LEGKTWIVGEQLTGADFALSFPLQWGLNYVNKAD-YPNITRYLEQIETH 191
>pdb|3AY8|A Chain A, Glutathione S-Transferase Unclassified 2 From Bombyx Mori
Length = 216
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 12 SGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPA-----DSFPNASRWYDSVSSHIA 66
S L L+Q+L +++ + T D +YA++ A SFPN RW +
Sbjct: 136 STLSFLNQFLEKTKWVAADHPTIADTSIYASMSSILAVGWDISSFPNIQRWIKDC--LLL 193
Query: 67 PSFPGKAVGVRVDG 80
P P G R G
Sbjct: 194 PGAPENEDGARTFG 207
>pdb|1PD2|1 Chain 1, Crystal Structure Of Hematopoietic Prostaglandin D
Synthase Complex With Glutathione
pdb|1PD2|2 Chain 2, Crystal Structure Of Hematopoietic Prostaglandin D
Synthase Complex With Glutathione
Length = 199
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 4 TFSDLHTESG---LKSLDQYLSGKSYISGNQLT 33
TF+DL T LK LD YL K + GN +T
Sbjct: 115 TFNDLLTRQAPHLLKDLDTYLGDKEWFIGNYVT 147
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 37 IKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVRVDGKGAPVD-----AAAAK 91
IK + VLV P + + YD I+ S G V +RV G + V +
Sbjct: 32 IKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQTGYVLTSTKN 91
Query: 92 PVCCCWRW 99
PV R+
Sbjct: 92 PVHATTRF 99
>pdb|3F1B|A Chain A, The Crystal Structure Of A Tetr-Like Transcriptional
Regulator From Rhodococcus Sp. Rha1
Length = 203
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 24 KSYISGNQLTKDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVRVDGKGA 83
++++ Q ++D + A L++ + P + ++ ++ IA G+AV RV G
Sbjct: 120 QAFVGSVQSSRDRLIELTAHLLESSTKDPEPGQDFELIA--IALVGAGEAVADRVAGGEI 177
Query: 84 PVDAAAAKPVCCCWR 98
VDAAA WR
Sbjct: 178 EVDAAADLLESLAWR 192
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 12 SGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPG 71
S K L L GK + IK + VLV P + + YD I+ S G
Sbjct: 280 SKYKDLGTILEGK-------IEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICG 332
Query: 72 KAVGVRVDGKGAPV 85
V +RV G + V
Sbjct: 333 DQVRLRVRGDDSDV 346
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 57 WYDSVSSHIAPSFPGKAVGVRVDGKG-APVDAAA 89
WY + ++ + P FPG A ++GKG AP D+ A
Sbjct: 151 WYHT-AAKLGPRFPGGADATLINGKGRAPSDSVA 183
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 57 WYDSVSSHIAPSFPGKAVGVRVDGKG-APVDAAA 89
WY + ++ + P FPG A ++GKG AP D+ A
Sbjct: 151 WYHT-AAKLGPRFPGGADATLINGKGRAPSDSVA 183
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 34 KDDIKVYAAVLVKPADSFPNA-SRWYDSVSSHIAPSFPGKAVGVRVD 79
+ D+ + LV PA SF N ++WY V H P+ P VG ++D
Sbjct: 74 QTDVSLICFSLVSPA-SFENVRAKWYPEVRHH-CPNTPIILVGTKLD 118
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 34 KDDIKVYAAVLVKPADSFPNA-SRWYDSVSSHIAPSFPGKAVGVRVD 79
+ D+ + LV PA SF N ++WY V H P+ P VG ++D
Sbjct: 78 QTDVSLICFSLVSPA-SFENVRAKWYPEVRHH-CPNTPIILVGTKLD 122
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 34 KDDIKVYAAVLVKPADSFPNA-SRWYDSVSSHIAPSFPGKAVGVRVD 79
+ D+ + LV PA SF N ++WY V H P+ P VG ++D
Sbjct: 74 QTDVSLICFSLVSPA-SFENVRAKWYPEVRHH-CPNTPIILVGTKLD 118
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 34 KDDIKVYAAVLVKPADSFPNA-SRWYDSVSSHIAPSFPGKAVGVRVD 79
+ D+ + LV PA SF N ++WY V H P+ P VG ++D
Sbjct: 76 QTDVSLICFSLVSPA-SFENVRAKWYPEVRHH-CPNTPIILVGTKLD 120
>pdb|2W61|A Chain A, Saccharomyces Cerevisiae Gas2p Apostructure (E176q Mutant)
Length = 555
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 26 YISGNQLTKDDIKVYAAVLVKPA 48
Y +GNQ+T D +A+ VK A
Sbjct: 171 YFAGNQVTNDHTNTFASPFVKAA 193
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 34 KDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVRVD 79
+ D+ + LV PA ++WY V H P+ P VG ++D
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHH-CPNTPIILVGTKLD 270
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 57 WYDSVSSHIAPSFPGKAVGVRVDGKG-APVDAAAAKPVCCCWR 98
WY + ++ + P+FP A ++GKG AP D++A V +
Sbjct: 151 WYHT-AAKLGPAFPNGADSTLINGKGRAPSDSSAQLSVVSVTK 192
>pdb|3SK3|A Chain A, Crystal Structure Of Salmonella Typhimurium Acetate Kinase
(Acka) With Citrate Bound At The Dimeric Interface
pdb|3SK3|B Chain B, Crystal Structure Of Salmonella Typhimurium Acetate Kinase
(Acka) With Citrate Bound At The Dimeric Interface
pdb|3SLC|A Chain A, Crystal Structure Of Apo Form Of Acetate Kinase (Acka)
From Salmonella Typhimurium
pdb|3SLC|B Chain B, Crystal Structure Of Apo Form Of Acetate Kinase (Acka)
From Salmonella Typhimurium
pdb|3SLC|C Chain C, Crystal Structure Of Apo Form Of Acetate Kinase (Acka)
From Salmonella Typhimurium
pdb|3SLC|D Chain D, Crystal Structure Of Apo Form Of Acetate Kinase (Acka)
From Salmonella Typhimurium
Length = 415
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 8 LHTESGLKSLDQYLSGKSYISGNQLTKDDIK----VYAAVLVKPADSF 51
L ESGL L + S Y+ N TK+D K VY L K S+
Sbjct: 285 LTKESGLLGLTEVTSDCRYVEDNYATKEDAKRAMDVYCHRLAKYIGSY 332
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 34 KDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVRVD 79
+ D+ + LV PA ++WY V H P+ P VG ++D
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHH-CPNTPIILVGTKLD 270
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 34 KDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVRVD 79
+ D+ + LV PA ++WY V H P+ P VG ++D
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHH-CPNTPIILVGTKLD 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,140,073
Number of Sequences: 62578
Number of extensions: 120953
Number of successful extensions: 346
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 24
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)