BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034297
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 2 QEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQPK 61
QE++ +V+ SD W G+ + +G ++ + +++ + G A +P
Sbjct: 132 QEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFLCVVS--KELHNTPYGTASEPS 189
Query: 62 DPYLLNPFSGSRI 74
+ + GSR+
Sbjct: 190 EKAKILQERGSRM 202
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 24 YFGARFGFGKNERKKLFQMIND 45
+ G R G ERK++ QM+ND
Sbjct: 380 FVGVRLSRGLEERKEILQMLND 401
>pdb|3V7N|A Chain A, Crystal Structure Of Threonine Synthase (Thrc) From From
Burkholderia Thailandensis
Length = 487
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 36 RKKLFQMINDLPTIFEVVTGNAKQPKD 62
R F + LP FEVV NA+Q KD
Sbjct: 453 RPAAFDGLEALPQRFEVVDANAQQVKD 479
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
Length = 692
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 29 FGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNPFSG 71
+G K F+ + D T +E TG + +P +NP+SG
Sbjct: 494 YGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSG 536
>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
Length = 692
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 29 FGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNPFSG 71
+G K F+ + D T +E TG + +P +NP+SG
Sbjct: 494 YGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSG 536
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 29 FGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNPFSG 71
+G K F+ + D T +E TG + +P +NP+SG
Sbjct: 478 YGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSG 520
>pdb|3NBJ|A Chain A, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|B Chain B, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|C Chain C, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|D Chain D, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|E Chain E, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|F Chain F, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
Length = 657
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 29 FGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNPFSG 71
+G K F+ + D T +E TG + +P +NP+SG
Sbjct: 478 YGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSG 520
>pdb|3NBB|A Chain A, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|B Chain B, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|C Chain C, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|D Chain D, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|E Chain E, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|F Chain F, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
Length = 663
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 29 FGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNPFSG 71
+G K F+ + D T +E TG + +P +NP+SG
Sbjct: 481 YGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSG 523
>pdb|2OOV|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 29 FGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNPFSG 71
+G K F+ + D T +E TG + +P +NP+SG
Sbjct: 482 YGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSG 524
>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 29 FGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNPFSG 71
+G K F+ + D T +E TG + +P +NP+SG
Sbjct: 482 YGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSG 524
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 29 FGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNPFSG 71
+G K F+ + D T +E TG + +P +NP+SG
Sbjct: 477 YGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSG 519
>pdb|3ONK|A Chain A, Yeast Ent3_enth Domain
pdb|3ONL|A Chain A, Yeast Ent3_enth-Vti1p_habc Complex Structure
pdb|3ONL|B Chain B, Yeast Ent3_enth-Vti1p_habc Complex Structure
Length = 150
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 72 SRILRNFSGRCGSSWRWLQRNLKLI 96
S I R F+ + GS WR + + L+L+
Sbjct: 50 SMIFRRFTEKAGSEWRQIYKALQLL 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,219,477
Number of Sequences: 62578
Number of extensions: 116582
Number of successful extensions: 273
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 12
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)