Query 034297
Match_columns 99
No_of_seqs 84 out of 86
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 20:33:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o1z_A Ribonucleotide reductas 47.9 16 0.00054 27.8 3.4 36 11-51 130-165 (311)
2 3olj_A Ribonucleoside-diphosph 45.7 17 0.00057 27.2 3.2 37 10-51 105-141 (286)
3 4dmb_A HD domain-containing pr 38.9 37 0.0013 24.8 4.1 42 10-57 46-87 (204)
4 1h0o_A Ribonucleoside-diphosph 38.4 19 0.00065 28.5 2.6 36 11-51 171-206 (390)
5 4a58_A Ribonucleoside-diphosph 35.5 44 0.0015 25.5 4.2 40 8-51 111-150 (324)
6 1jk0_A RNR Y2, ribonucleoside- 33.0 35 0.0012 27.5 3.4 35 11-50 197-231 (419)
7 4dr0_A Ribonucleoside-diphosph 31.1 34 0.0012 26.5 2.9 35 11-51 120-154 (350)
8 3qfa_A Thioredoxin reductase 1 30.5 61 0.0021 25.0 4.3 33 18-57 471-503 (519)
9 3ddl_A Xanthorhodopsin; carote 29.1 30 0.001 26.1 2.3 44 5-53 18-61 (273)
10 1ynb_A Hypothetical protein AF 28.3 1.1E+02 0.0037 21.8 5.0 43 10-57 39-84 (173)
11 3u5s_A FAD-linked sulfhydryl o 25.0 31 0.0011 23.3 1.6 32 19-52 32-63 (126)
12 2k5c_A Uncharacterized protein 24.3 24 0.00083 24.3 0.9 22 24-47 61-82 (95)
13 1xx7_A Oxetanocin-like protein 23.1 1.1E+02 0.0036 21.7 4.1 41 10-56 38-84 (184)
No 1
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Probab=47.86 E-value=16 Score=27.78 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=28.5
Q ss_pred hhhhhhHHHHHHHHhhhhcCCChhHHHHHHHHhhcCcchhh
Q 034297 11 AVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFE 51 (99)
Q Consensus 11 AVHSDsWLlsVAFyfGArlgfd~~eRkrLF~mINdLPTV~E 51 (99)
||||.+--.-+-- ++-|..+|.++|..+.+.|.+.+
T Consensus 130 ~iHs~sYs~il~t-----l~~d~~e~~~~f~~~~~~p~l~~ 165 (311)
T 2o1z_A 130 NIHSETYSLLIDN-----YIKDEKERMNLFHAIENIPAVKN 165 (311)
T ss_dssp HHHHHHHHHHHHH-----HCCCHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHH-----HCCCHHHHHHHHHHHhcCHHHHH
Confidence 7899987654443 33489999999999999999864
No 2
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=45.71 E-value=17 Score=27.21 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=28.6
Q ss_pred hhhhhhhHHHHHHHHhhhhcCCChhHHHHHHHHhhcCcchhh
Q 034297 10 VAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFE 51 (99)
Q Consensus 10 VAVHSDsWLlsVAFyfGArlgfd~~eRkrLF~mINdLPTV~E 51 (99)
=||||++--.-+--+ +-|+.+|.++|+.+.+.|.+-+
T Consensus 105 E~iHs~sYs~il~tl-----~~d~~e~~~~f~~~~~~p~l~~ 141 (286)
T 3olj_A 105 ENIHSEMYSLLIDTY-----IKDPKEREFLFNAIETMPCVKK 141 (286)
T ss_dssp HHHHHHHHHHHHHHH-----CCCHHHHHHHHTHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCHHHHH
Confidence 479999876555443 3489999999999999998744
No 3
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=38.90 E-value=37 Score=24.84 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=28.7
Q ss_pred hhhhhhhHHHHHHHHhhhhcCCChhHHHHHHHHhhcCcchhhhhhcCC
Q 034297 10 VAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNA 57 (99)
Q Consensus 10 VAVHSDsWLlsVAFyfGArlgfd~~eRkrLF~mINdLPTV~EvVtg~~ 57 (99)
||=| ||.+++-.++-+--+.|.+ |-....++-|+| |+++|--
T Consensus 46 VAEH--S~~vAliA~~l~~~~vD~~-r~~~maL~HDl~---E~~tGDi 87 (204)
T 4dmb_A 46 VSDH--MYRMAVMAMVIKDDRLNKD-RCVRLALVHDMA---ECIVGDI 87 (204)
T ss_dssp HHHH--HHHHHHHHHHSCCTTSCHH-HHHHHHHHTTTT---HHHHCCC
T ss_pred HHHH--HHHHHHHHHHHccccCCHH-HHHHHHHhcchH---HhhcCCC
Confidence 4555 5999887776554334654 667778888987 7788843
No 4
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A
Probab=38.43 E-value=19 Score=28.54 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=28.3
Q ss_pred hhhhhhHHHHHHHHhhhhcCCChhHHHHHHHHhhcCcchhh
Q 034297 11 AVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFE 51 (99)
Q Consensus 11 AVHSDsWLlsVAFyfGArlgfd~~eRkrLF~mINdLPTV~E 51 (99)
||||.+.-.-+-- ++-|..+|.++|..+.+.|.|-+
T Consensus 171 aiHsesYS~il~t-----l~~d~~e~~~if~~~~~~p~l~~ 206 (390)
T 1h0o_A 171 NIHSEMYSLLIDT-----YIKDPKEREYLFNAIETMPCVKK 206 (390)
T ss_dssp HHHHHHHHHHHHH-----HCCCHHHHHHHHTHHHHCHHHHH
T ss_pred HHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHhCHHHHH
Confidence 7899987654433 44589999999999999998753
No 5
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase, epstein-BARR virus, R2 subunit; 1.68A {Human herpesvirus 4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A 4a5i_A 4a5j_A
Probab=35.50 E-value=44 Score=25.54 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=29.2
Q ss_pred hHhhhhhhhHHHHHHHHhhhhcCCChhHHHHHHHHhhcCcchhh
Q 034297 8 SLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFE 51 (99)
Q Consensus 8 SLVAVHSDsWLlsVAFyfGArlgfd~~eRkrLF~mINdLPTV~E 51 (99)
..=+|||.+--.-+--++. -|+.+|..+|..+.+.|.+-+
T Consensus 111 ~~E~iHs~sYs~il~tl~~----~d~~e~~~~f~~~~~~p~l~~ 150 (324)
T 4a58_A 111 AMENVHGETYANILNMLFD----GDRAAMNAYAEAIMTDEALQA 150 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHhCHHHHH
Confidence 3447999987655544332 378899999999999998754
No 6
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Probab=33.03 E-value=35 Score=27.45 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=27.4
Q ss_pred hhhhhhHHHHHHHHhhhhcCCChhHHHHHHHHhhcCcchh
Q 034297 11 AVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIF 50 (99)
Q Consensus 11 AVHSDsWLlsVAFyfGArlgfd~~eRkrLF~mINdLPTV~ 50 (99)
|||+.+.-.-+-- ++-|+.+|.++|..+.+.|.|.
T Consensus 197 aIHsesYS~il~t-----l~~d~~e~~~iF~~i~~~p~L~ 231 (419)
T 1jk0_A 197 NIHSETYSLLIDT-----YIKDPKESEFLFNAIHTIPEIG 231 (419)
T ss_dssp HHHHHHHHHHHHH-----HCCCHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHH-----hCCCHHHHHHHHHHHhhCHHHH
Confidence 7899987654443 3347899999999999999885
No 7
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=31.10 E-value=34 Score=26.53 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=27.1
Q ss_pred hhhhhhHHHHHHHHhhhhcCCChhHHHHHHHHhhcCcchhh
Q 034297 11 AVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFE 51 (99)
Q Consensus 11 AVHSDsWLlsVAFyfGArlgfd~~eRkrLF~mINdLPTV~E 51 (99)
||||.+--.-+--+ . +.++|.++|..+.+.|.|-+
T Consensus 120 aiHs~sYs~il~tl----~--~~~e~~~~f~~~~~~p~l~~ 154 (350)
T 4dr0_A 120 AVHAKSYSNIFMTL----A--PTETINEVFEWVKQNKYLQK 154 (350)
T ss_dssp HTHHHHHHHHHHHH----S--CHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHH----c--CchhHHHHHHHHhcCHHHHH
Confidence 49999876655544 2 66889999999999998754
No 8
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=30.46 E-value=61 Score=25.03 Aligned_cols=33 Identities=30% Similarity=0.172 Sum_probs=27.5
Q ss_pred HHHHHHHhhhhcCCChhHHHHHHHHhhcCcchhhhhhcCC
Q 034297 18 LLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNA 57 (99)
Q Consensus 18 LlsVAFyfGArlgfd~~eRkrLF~mINdLPTV~EvVtg~~ 57 (99)
.+++|...|+.. ..|-.+|--+||.-|++....
T Consensus 471 ~~~~ai~~~~t~-------~~l~~~~~~hPt~~E~~~~~~ 503 (519)
T 3qfa_A 471 GFAAALKCGLTK-------KQLDSTIGIHPVCAEVFTTLS 503 (519)
T ss_dssp HHHHHHHTTCBH-------HHHHHSCCCTTCGGGGGGGCC
T ss_pred HHHHHHHCCCCH-------HHHhccccCCCChHHHHHHHH
Confidence 467788888877 788999999999999988744
No 9
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber}
Probab=29.09 E-value=30 Score=26.13 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=31.1
Q ss_pred chhhHhhhhhhhHHHHHHHHhhhhcCCChhHHHHHHHHhhcCcchhhhh
Q 034297 5 DWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVV 53 (99)
Q Consensus 5 DWLSLVAVHSDsWLlsVAFyfGArlgfd~~eRkrLF~mINdLPTV~EvV 53 (99)
|||.++.+ .=+.+..||+..+. ....++|+|-.+.-+.|..-.+
T Consensus 18 ~~lw~~~a---~m~~atl~F~~~~~--~v~~~~R~~~~v~~lit~IAai 61 (273)
T 3ddl_A 18 NMFSFTVA---TMTASFVFFVLARN--NVAPKYRISMMVSALVVFIAGY 61 (273)
T ss_dssp HHHHHHHH---HHHHHHHHHHHGGG--GSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHc--cCCcceehhhHHHHHHHHHHHH
Confidence 56665544 33556667888777 6778888888888888876554
No 10
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=28.32 E-value=1.1e+02 Score=21.75 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=27.1
Q ss_pred hhhhhhhHHHHH-HHHhhhhcCCChhH--HHHHHHHhhcCcchhhhhhcCC
Q 034297 10 VAVHSDSWLLAV-AFYFGARFGFGKNE--RKKLFQMINDLPTIFEVVTGNA 57 (99)
Q Consensus 10 VAVHSDsWLlsV-AFyfGArlgfd~~e--RkrLF~mINdLPTV~EvVtg~~ 57 (99)
||=|| |-+|+ |..++..-|.|.++ |.-...++-|+| |+.+|--
T Consensus 39 VAeHS--~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~---E~~~GDi 84 (173)
T 1ynb_A 39 VAEHN--FRAAIIAFILALKSGESVEKACKAATAALFHDLH---EARTMDL 84 (173)
T ss_dssp HHHHH--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTT---HHHHCCC
T ss_pred HHHHH--HHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchH---HhhccCC
Confidence 56665 88885 44454435668744 344456778877 7778855
No 11
>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*
Probab=24.99 E-value=31 Score=23.30 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=26.5
Q ss_pred HHHHHHhhhhcCCChhHHHHHHHHhhcCcchhhh
Q 034297 19 LAVAFYFGARFGFGKNERKKLFQMINDLPTIFEV 52 (99)
Q Consensus 19 lsVAFyfGArlgfd~~eRkrLF~mINdLPTV~Ev 52 (99)
=++|++|-..- +.++++.+.+.|..+|.+|=+
T Consensus 32 Htia~~yP~~P--t~~~k~~~~~fi~~l~~~lPC 63 (126)
T 3u5s_A 32 HTLAAYYPDLP--TPEQQQDMAQFIHLFSKFYPX 63 (126)
T ss_dssp HHHHHTSCSSC--CHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhhCCCCC--CHHHHHHHHHHHHHHHHhCCc
Confidence 36888887776 899999999999999988743
No 12
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=24.33 E-value=24 Score=24.31 Aligned_cols=22 Identities=27% Similarity=0.803 Sum_probs=19.0
Q ss_pred HhhhhcCCChhHHHHHHHHhhcCc
Q 034297 24 YFGARFGFGKNERKKLFQMINDLP 47 (99)
Q Consensus 24 yfGArlgfd~~eRkrLF~mINdLP 47 (99)
|||..| .++|-...|.++||.-
T Consensus 61 FyG~~L--p~~EaeKVFELLNdFk 82 (95)
T 2k5c_A 61 FYGKTL--PRREAEKVFELLNDFK 82 (95)
T ss_dssp EETTSS--CTTTHHHHHHHHHSCS
T ss_pred HhcccC--ChHHHHHHHHHHHHcc
Confidence 688888 8888899999999863
No 13
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=23.09 E-value=1.1e+02 Score=21.68 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=26.7
Q ss_pred hhhhhhhHHHHHHHHhhhh------cCCChhHHHHHHHHhhcCcchhhhhhcC
Q 034297 10 VAVHSDSWLLAVAFYFGAR------FGFGKNERKKLFQMINDLPTIFEVVTGN 56 (99)
Q Consensus 10 VAVHSDsWLlsVAFyfGAr------lgfd~~eRkrLF~mINdLPTV~EvVtg~ 56 (99)
||=| ||.+++-.+.-+. -+.|. +|..+..++-|+| |+++|-
T Consensus 38 vAeH--S~~vA~ia~~la~~~~~~~~~~d~-~r~~~~aL~HDl~---E~~~GD 84 (184)
T 1xx7_A 38 VADH--SYRVAFITLLLAEELKKKGVEIDV-EKALKIAIIHDLG---EAIITD 84 (184)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHTTTT---HHHHCC
T ss_pred HHHH--HHHHHHHHHHHHHHHhhccCCCCH-HHHHHHHHHcCcH---HhhcCC
Confidence 5666 4998875544333 24455 4566778899987 777883
Done!