Query 034297
Match_columns 99
No_of_seqs 84 out of 86
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 20:33:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034297.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034297hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h6va3 d.87.1.1 (A:367-499) M 41.0 11 0.00082 23.4 3.1 41 19-68 86-126 (133)
2 d1vfga1 a.173.1.1 (A:137-351) 37.4 9.8 0.00072 23.8 2.4 24 22-45 20-45 (215)
3 d1ynba1 a.211.1.1 (A:7-173) Hy 34.1 41 0.003 21.9 5.3 44 10-58 33-79 (167)
4 d2f2ac1 a.137.12.1 (C:3-94) Gl 27.0 33 0.0024 19.9 3.5 53 27-80 14-66 (92)
5 d1jk0a_ a.25.1.2 (A:) Ribonucl 23.8 29 0.0021 24.6 3.2 41 10-55 151-191 (334)
6 d1lvla3 d.87.1.1 (A:336-458) D 23.6 15 0.0011 22.4 1.4 31 18-55 81-111 (123)
7 d1ojta3 d.87.1.1 (A:471-598) D 23.3 15 0.0011 22.7 1.3 30 18-54 81-110 (128)
8 d2paqa1 a.211.1.1 (A:2-187) 5' 22.2 55 0.004 21.3 4.2 43 10-58 29-78 (186)
9 d1t8ta_ c.37.1.5 (A:) Heparan 21.5 10 0.00076 24.3 0.3 9 78-86 24-32 (271)
10 d1vkja_ c.37.1.5 (A:) Heparan 20.0 12 0.00085 23.4 0.3 9 79-87 13-21 (258)
No 1
>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=41.03 E-value=11 Score=23.35 Aligned_cols=41 Identities=20% Similarity=0.051 Sum_probs=29.3
Q ss_pred HHHHHHhhhhcCCChhHHHHHHHHhhcCcchhhhhhcCCcCCCCCCCCCC
Q 034297 19 LAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNP 68 (99)
Q Consensus 19 lsVAFyfGArlgfd~~eRkrLF~mINdLPTV~EvVtg~~~k~~~~~~~~~ 68 (99)
+++|.-.+..+ ..|-++|=-+||+-|.++. -.+.+.+..+|
T Consensus 86 ~~~ai~~~~t~-------~~l~~~i~~hPT~sE~~~~--l~~~~~s~~~~ 126 (133)
T d1h6va3 86 FAAALKCGLTK-------QQLDSTIGIHPVCAEIFTT--LSVTKRSGGDI 126 (133)
T ss_dssp HHHHHHTTCBH-------HHHHHSCCCTTCGGGGGGG--CCCBGGGCCCC
T ss_pred HHHHHHcCCCH-------HHHhhccccCCCHHHHHHH--hhhhhhccCCc
Confidence 45566666666 8888999999999999855 44455544444
No 2
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]}
Probab=37.39 E-value=9.8 Score=23.77 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=17.2
Q ss_pred HHHhhhhcCCC--hhHHHHHHHHhhc
Q 034297 22 AFYFGARFGFG--KNERKKLFQMIND 45 (99)
Q Consensus 22 AFyfGArlgfd--~~eRkrLF~mINd 45 (99)
|+-|+|||||. ++..+.+-.++|.
T Consensus 20 a~RF~ar~gf~i~~~T~~~i~~~~~~ 45 (215)
T d1vfga1 20 ALRFAGRLNFKLSRSTEKLLKQAVNL 45 (215)
T ss_dssp HHHHHHHHTCEECHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHc
Confidence 67888998865 6666667666664
No 3
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=34.05 E-value=41 Score=21.89 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=27.5
Q ss_pred hhhhhhhHHHHHHH-HhhhhcCCChh--HHHHHHHHhhcCcchhhhhhcCCc
Q 034297 10 VAVHSDSWLLAVAF-YFGARFGFGKN--ERKKLFQMINDLPTIFEVVTGNAK 58 (99)
Q Consensus 10 VAVHSDsWLlsVAF-yfGArlgfd~~--eRkrLF~mINdLPTV~EvVtg~~~ 58 (99)
||=| ||-+||.- .++...|-+.. +|.-...++-|+| |+.+|--.
T Consensus 33 VAeH--s~~vA~ia~~la~~~~~~~~~~~k~~~maL~HDl~---E~~~GDi~ 79 (167)
T d1ynba1 33 VAEH--NFRAAIIAFILALKSGESVEKACKAATAALFHDLH---EARTMDLH 79 (167)
T ss_dssp HHHH--HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTT---HHHHCCCC
T ss_pred HHHH--HHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH---HHhcCCCc
Confidence 5556 59888644 45555554443 3555566778876 78888543
No 4
>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]}
Probab=27.02 E-value=33 Score=19.92 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=38.3
Q ss_pred hhcCCChhHHHHHHHHhhcCcchhhhhhcCCcCCCCCCCCCCCccchhhhccCC
Q 034297 27 ARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNPFSGSRILRNFSG 80 (99)
Q Consensus 27 Arlgfd~~eRkrLF~mINdLPTV~EvVtg~~~k~~~~~~~~~~~~~~~~~~~~~ 80 (99)
|||+++.++...+-.-+|+.=.-++.+...... .-++..+|.+.+.++|.=.+
T Consensus 14 arL~l~deE~~~~~~~l~~Il~~~~~L~~vDt~-~vep~~~~~~~~~~lReD~~ 66 (92)
T d2f2ac1 14 ARLQISPEETEEMANTLESILDFAKQNDSADTE-GVEPTYHVLDLQNVLREDKA 66 (92)
T ss_dssp TTCCCCTTHHHHHHHHHHHHHHHHGGGGGSCCT-TCCCCSCSSCCCCCCBCCCC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcC-CCCCCccccccccCCCCCcC
Confidence 789999999999988888877777777665433 33555678877777776333
No 5
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Probab=23.80 E-value=29 Score=24.61 Aligned_cols=41 Identities=27% Similarity=0.355 Sum_probs=31.6
Q ss_pred hhhhhhhHHHHHHHHhhhhcCCChhHHHHHHHHhhcCcchhhhhhc
Q 034297 10 VAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTG 55 (99)
Q Consensus 10 VAVHSDsWLlsVAFyfGArlgfd~~eRkrLF~mINdLPTV~EvVtg 55 (99)
=++||++--.-+--| +-|..++..+|+.+...|.+.+=...
T Consensus 151 E~IHsesYS~ii~tl-----~~d~~e~~~lf~~~~~~~~i~~k~~~ 191 (334)
T d1jk0a_ 151 ENIHSETYSLLIDTY-----IKDPKESEFLFNAIHTIPEIGEKAEW 191 (334)
T ss_dssp HHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----ccchhHHHHHHHHHHHCHHHHHHHHH
Confidence 368999876665544 34899999999999999999875443
No 6
>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}
Probab=23.63 E-value=15 Score=22.44 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhcCCChhHHHHHHHHhhcCcchhhhhhc
Q 034297 18 LLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTG 55 (99)
Q Consensus 18 LlsVAFyfGArlgfd~~eRkrLF~mINdLPTV~EvVtg 55 (99)
.+++|...|..+ ..|-.+|--+||.-|++..
T Consensus 81 ~~~lai~~~~t~-------~~l~~~i~~hPT~sE~~~~ 111 (123)
T d1lvla3 81 AFAQSLEMGACL-------EDVAGTIHAHPTLGEAVQE 111 (123)
T ss_dssp HHHHHHHHTCBH-------HHHHTSCCCTTCTTHHHHH
T ss_pred HHHHHHHcCCCH-------HHHhcCCCCCCCHHHHHHH
Confidence 367788888888 8899999999999998854
No 7
>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Probab=23.29 E-value=15 Score=22.72 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=24.9
Q ss_pred HHHHHHHhhhhcCCChhHHHHHHHHhhcCcchhhhhh
Q 034297 18 LLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVT 54 (99)
Q Consensus 18 LlsVAFyfGArlgfd~~eRkrLF~mINdLPTV~EvVt 54 (99)
.+++|.-.|..+ ..|-.||=-+||+-|.+.
T Consensus 81 ~~~lai~~~~t~-------~~l~~~i~~hPT~sE~l~ 110 (128)
T d1ojta3 81 EVCLAIEMGCDA-------ADIGKTIHPHPTLGESIG 110 (128)
T ss_dssp HHHHHHHTTCBH-------HHHHTSCCCSSSSTTHHH
T ss_pred HHHHHHHcCCCH-------HHHhhCcCcCCCHHHHHH
Confidence 467777777777 899999999999999874
No 8
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]}
Probab=22.23 E-value=55 Score=21.27 Aligned_cols=43 Identities=35% Similarity=0.450 Sum_probs=25.3
Q ss_pred hhhhhhhHHHHHHHHhhh-----hcC--CChhHHHHHHHHhhcCcchhhhhhcCCc
Q 034297 10 VAVHSDSWLLAVAFYFGA-----RFG--FGKNERKKLFQMINDLPTIFEVVTGNAK 58 (99)
Q Consensus 10 VAVHSDsWLlsVAFyfGA-----rlg--fd~~eRkrLF~mINdLPTV~EvVtg~~~ 58 (99)
||=|| |-+|+-.++-+ ++| .|.+ |--...++-|+| |+++|--.
T Consensus 29 VAeHs--~~vA~ia~~l~~~~~~~~g~~vd~~-k~~~~aL~HDl~---E~~~GDi~ 78 (186)
T d2paqa1 29 VSEHS--LQVAMVAHALAAIKNRKFGGNVNAE-RIALLAMYHDAS---EVLTGDLP 78 (186)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHSCCCCCHH-HHHHHHHHTTTT---HHHHCCCC
T ss_pred HHHHH--HHHHHHHHHHhHHHhhhccccCCHH-HHHHHHHHcchH---HHHcCCCC
Confidence 56664 77776444332 222 3554 555567788887 77888543
No 9
>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine 3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.46 E-value=10 Score=24.27 Aligned_cols=9 Identities=11% Similarity=-0.082 Sum_probs=7.6
Q ss_pred cCCCCCcch
Q 034297 78 FSGRCGSSW 86 (99)
Q Consensus 78 ~~~~~~~~~ 86 (99)
--||||++|
T Consensus 24 G~pKsGTT~ 32 (271)
T d1t8ta_ 24 GVKKGGTRA 32 (271)
T ss_dssp ECTTSSHHH
T ss_pred CCCCchHHH
Confidence 469999997
No 10
>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.97 E-value=12 Score=23.39 Aligned_cols=9 Identities=11% Similarity=0.032 Sum_probs=7.4
Q ss_pred CCCCCcchH
Q 034297 79 SGRCGSSWR 87 (99)
Q Consensus 79 ~~~~~~~~~ 87 (99)
-||||++|=
T Consensus 13 ~prsGTT~L 21 (258)
T d1vkja_ 13 VRKGGTRAL 21 (258)
T ss_dssp CTTSSHHHH
T ss_pred CCCchHHHH
Confidence 589999984
Done!