Your job contains 1 sequence.
>034299
MSGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGEVDEELDSHLDLSNLRAHPLKPVIH
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 034299
(98 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0035271 - symbol:CG2021 species:7227 "Drosophila m... 326 2.1e-29 1
UNIPROTKB|Q3ZCE0 - symbol:NAA38 "N-alpha-acetyltransferas... 325 2.7e-29 1
UNIPROTKB|O95777 - symbol:NAA38 "N-alpha-acetyltransferas... 325 2.7e-29 1
MGI|MGI:1923772 - symbol:Naa38 "N(alpha)-acetyltransferas... 325 2.7e-29 1
DICTYBASE|DDB_G0288479 - symbol:lsm8 "putative U6 small n... 266 4.8e-23 1
GENEDB_PFALCIPARUM|MAL8P1.9 - symbol:MAL8P1.9 "u6 snRNA-a... 248 3.9e-21 1
UNIPROTKB|C0H4Y9 - symbol:MAL8P1.9 "U6 snRNA-associated S... 248 3.9e-21 1
POMBASE|SPCC1840.10 - symbol:lsm8 "U6 snRNP-associated pr... 235 9.2e-20 1
TAIR|locus:2011246 - symbol:LSM1A "SM-like 1A" species:37... 162 5.0e-12 1
DICTYBASE|DDB_G0279837 - symbol:lsm1 "LSM (like-Sm) domai... 158 1.3e-11 1
TAIR|locus:2087522 - symbol:LSM1B "SM-like 1B" species:37... 154 3.5e-11 1
CGD|CAL0004008 - symbol:orf19.7290 species:5476 "Candida ... 153 4.5e-11 1
POMBASE|SPBC3D6.08c - symbol:lsm1 "mRNA decapping complex... 151 7.4e-11 1
UNIPROTKB|G4MST0 - symbol:MGG_04539 "Uncharacterized prot... 147 2.0e-10 1
FB|FBgn0261067 - symbol:LSm1 species:7227 "Drosophila mel... 146 2.5e-10 1
SGD|S000003660 - symbol:LSM1 "Lsm (Like Sm) protein" spec... 144 4.1e-10 1
ZFIN|ZDB-GENE-040801-68 - symbol:lsm1 "LSM1 homolog, U6 s... 144 4.1e-10 1
UNIPROTKB|Q5E9Z8 - symbol:LSM1 "U6 snRNA-associated Sm-li... 143 5.2e-10 1
UNIPROTKB|E2R7S6 - symbol:LSM1 "Uncharacterized protein" ... 143 5.2e-10 1
UNIPROTKB|O15116 - symbol:LSM1 "U6 snRNA-associated Sm-li... 143 5.2e-10 1
UNIPROTKB|I3LCU8 - symbol:LSM1 "Uncharacterized protein" ... 143 5.2e-10 1
MGI|MGI:1914457 - symbol:Lsm1 "LSM1 homolog, U6 small nuc... 143 5.2e-10 1
RGD|1304967 - symbol:Lsm1 "LSM1 homolog, U6 small nuclear... 141 8.4e-10 1
WB|WBGene00003076 - symbol:lsm-1 species:6239 "Caenorhabd... 136 2.9e-09 1
POMBASE|SPCC285.12 - symbol:lsm7 "U6 snRNP-associated pro... 118 2.3e-07 1
ASPGD|ASPL0000049189 - symbol:AN1495 species:162425 "Emer... 116 3.8e-07 1
SGD|S000000831 - symbol:SMB1 "Core Sm protein Sm B" speci... 86 8.4e-07 2
UNIPROTKB|Q3ZBL0 - symbol:SNRPG "Small nuclear ribonucleo... 112 1.0e-06 1
UNIPROTKB|P62308 - symbol:SNRPG "Small nuclear ribonucleo... 112 1.0e-06 1
UNIPROTKB|F2Z5V2 - symbol:LOC100525867 "Uncharacterized p... 112 1.0e-06 1
RGD|1584713 - symbol:Snrpg "small nuclear ribonucleoprote... 112 1.0e-06 1
ASPGD|ASPL0000056132 - symbol:AN0767 species:162425 "Emer... 111 1.3e-06 1
UNIPROTKB|G4NLE3 - symbol:MGG_02938 "Uncharacterized prot... 110 1.6e-06 1
ZFIN|ZDB-GENE-040912-105 - symbol:zgc:103688 "zgc:103688"... 109 2.1e-06 1
POMBASE|SPBC4B4.05 - symbol:smg1 "U4/U6 x U5 tri-snRNP co... 108 2.6e-06 1
UNIPROTKB|G4MXF4 - symbol:MGG_10740 "Sm snRNP core protei... 107 3.4e-06 1
DICTYBASE|DDB_G0289499 - symbol:lsm7 "putative U6 small n... 104 7.0e-06 1
FB|FBgn0261791 - symbol:SmG "Small ribonucleoprotein part... 104 7.0e-06 1
UNIPROTKB|A8MWD9 - symbol:A8MWD9 "Small nuclear ribonucle... 104 7.0e-06 1
TAIR|locus:2056825 - symbol:EMB2816 "AT2G03870" species:3... 104 7.0e-06 1
GENEDB_PFALCIPARUM|MAL8P1.48 - symbol:MAL8P1.48 "small nu... 103 9.0e-06 1
WB|WBGene00003081 - symbol:lsm-7 species:6239 "Caenorhabd... 102 1.1e-05 1
WB|WBGene00004920 - symbol:snr-7 species:6239 "Caenorhabd... 102 1.1e-05 1
UNIPROTKB|Q23543 - symbol:lsm-7 "Protein LSM-7" species:6... 102 1.1e-05 1
DICTYBASE|DDB_G0282863 - symbol:snrpG "putative small nuc... 99 2.4e-05 1
TAIR|locus:2080777 - symbol:AT3G11500 "AT3G11500" species... 98 3.0e-05 1
WB|WBGene00004915 - symbol:snr-2 species:6239 "Caenorhabd... 97 3.9e-05 1
POMBASE|SPAC26A3.08 - symbol:smb1 "Sm snRNP core protein ... 95 6.3e-05 1
SGD|S000003783 - symbol:LSM8 "Lsm (Like Sm) protein" spec... 94 8.1e-05 1
TAIR|locus:2061446 - symbol:SNRNP-G "AT2G23930" species:3... 94 8.1e-05 1
DICTYBASE|DDB_G0302414 - symbol:snrpE "small nuclear ribo... 93 0.00010 1
GENEDB_PFALCIPARUM|PF14_0146 - symbol:PF14_0146 "ribonucl... 95 0.00014 1
UNIPROTKB|Q8ILU8 - symbol:PF14_0146 "Ribonucleoprotein, p... 95 0.00014 1
FB|FBgn0261790 - symbol:SmE "Small ribonucleoprotein part... 91 0.00017 1
GENEDB_PFALCIPARUM|MAL13P1.253 - symbol:MAL13P1.253 "smal... 91 0.00017 1
UNIPROTKB|Q8IDJ7 - symbol:MAL13P1.253 "Small nuclear ribo... 91 0.00017 1
SGD|S000002965 - symbol:SMX2 "Core Sm protein Sm G" speci... 91 0.00017 1
TAIR|locus:2156589 - symbol:SAD1 "SUPERSENSITIVE TO ABA A... 91 0.00017 1
UNIPROTKB|G4MSI0 - symbol:MGG_01450 "Sm snRNP core protei... 90 0.00021 1
ZFIN|ZDB-GENE-030131-8284 - symbol:lsm7 "LSM7 homolog, U6... 90 0.00021 1
ASPGD|ASPL0000007577 - symbol:AN6735 species:162425 "Emer... 89 0.00027 1
TAIR|locus:2053989 - symbol:AT2G18740 "AT2G18740" species... 89 0.00027 1
GENEDB_PFALCIPARUM|PFL0460w - symbol:PFL0460w "u6 snRNA-a... 88 0.00035 1
UNIPROTKB|Q9UK45 - symbol:LSM7 "U6 snRNA-associated Sm-li... 88 0.00035 1
UNIPROTKB|Q8I5V6 - symbol:PFL0460w "Lsm7 homologue, putat... 88 0.00035 1
SGD|S000005685 - symbol:SME1 "Core Sm protein Sm E" speci... 87 0.00045 1
TAIR|locus:2118781 - symbol:AT4G30330 "AT4G30330" species... 87 0.00045 1
FB|FBgn0261068 - symbol:LSm7 species:7227 "Drosophila mel... 86 0.00057 1
UNIPROTKB|E1C962 - symbol:E1C962 "Uncharacterized protein... 86 0.00057 1
SGD|S000006434 - symbol:LSM3 "Lsm (Like Sm) protein" spec... 86 0.00057 1
UNIPROTKB|J3QLE5 - symbol:SNRPN "Small nuclear ribonucleo... 87 0.00068 1
FB|FBgn0035675 - symbol:CG6610 species:7227 "Drosophila m... 85 0.00072 1
UNIPROTKB|F1ME11 - symbol:LOC100296197 "Uncharacterized p... 85 0.00072 1
SGD|S000005091 - symbol:LSM7 "Lsm (Like Sm) protein" spec... 85 0.00072 1
FB|FBgn0262601 - symbol:SmB "Small ribonucleoprotein part... 88 0.00083 1
WB|WBGene00004919 - symbol:snr-6 species:6239 "Caenorhabd... 84 0.00093 1
>FB|FBgn0035271 [details] [associations]
symbol:CG2021 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] INTERPRO:IPR001163 EMBL:AE014296
GO:GO:0071011 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
HSSP:P14678 EMBL:BT023632 RefSeq:NP_647660.1 UniGene:Dm.31160
SMR:Q9W087 IntAct:Q9W087 MINT:MINT-302001 STRING:Q9W087
EnsemblMetazoa:FBtr0072791 GeneID:38229 KEGG:dme:Dmel_CG2021
UCSC:CG2021-RA FlyBase:FBgn0035271 InParanoid:Q9W087
OrthoDB:EOG4MCVH1 GenomeRNAi:38229 NextBio:807639 Uniprot:Q9W087
Length = 95
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 57/93 (61%), Positives = 75/93 (80%)
Query: 6 GLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIR 65
GLES + +S+IT DGRN +G LKGFDQ NII+DE HERV+ST G++Q+VLGL+IIR
Sbjct: 3 GLESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHIIR 62
Query: 66 GDNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 98
GDNI+++G +DE +DS LDL+N+R PL PV+H
Sbjct: 63 GDNIAVIGLIDETIDSRLDLANIRGEPLGPVVH 95
>UNIPROTKB|Q3ZCE0 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
EMBL:AY644517 EMBL:BC102499 IPI:IPI00714062 RefSeq:NP_001029912.1
UniGene:Bt.73360 ProteinModelPortal:Q3ZCE0 SMR:Q3ZCE0 STRING:Q3ZCE0
Ensembl:ENSBTAT00000016780 GeneID:613630 KEGG:bta:613630 CTD:51691
HOVERGEN:HBG105578 InParanoid:Q3ZCE0 OrthoDB:EOG48SGVN
NextBio:20898677 Uniprot:Q3ZCE0
Length = 96
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 58/92 (63%), Positives = 77/92 (83%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
LE+ + + ++VIT+DGR IVG LKGFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 67 DNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 98
DN++++GE+DEE DS LDL N+RA PL V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>UNIPROTKB|O95777 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0030529
EMBL:AC006389 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII CTD:51691 HOVERGEN:HBG105578
OrthoDB:EOG48SGVN EMBL:AF182294 EMBL:BC002742 EMBL:BC022440
IPI:IPI00219871 RefSeq:NP_057284.1 UniGene:Hs.655046
ProteinModelPortal:O95777 SMR:O95777 DIP:DIP-31195N IntAct:O95777
MINT:MINT-1032595 STRING:O95777 PhosphoSite:O95777 PaxDb:O95777
PeptideAtlas:O95777 PRIDE:O95777 Ensembl:ENST00000249299
GeneID:51691 KEGG:hsa:51691 UCSC:uc003vjg.3 GeneCards:GC07P117824
HGNC:HGNC:20471 HPA:HPA020116 MIM:607288 neXtProt:NX_O95777
PharmGKB:PA165618166 InParanoid:O95777 PhylomeDB:O95777
GenomeRNAi:51691 NextBio:55698 ArrayExpress:O95777 Bgee:O95777
CleanEx:HS_LSM8 Genevestigator:O95777 GermOnline:ENSG00000128534
Uniprot:O95777
Length = 96
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 58/92 (63%), Positives = 77/92 (83%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
LE+ + + ++VIT+DGR IVG LKGFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 67 DNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 98
DN++++GE+DEE DS LDL N+RA PL V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>MGI|MGI:1923772 [details] [associations]
symbol:Naa38 "N(alpha)-acetyltransferase 38, NatC auxiliary
subunit" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] MGI:MGI:1923772
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
CTD:51691 HOVERGEN:HBG105578 OrthoDB:EOG48SGVN EMBL:AK088664
EMBL:AK167674 EMBL:BC019458 IPI:IPI00263042 RefSeq:NP_598700.1
UniGene:Mm.275158 ProteinModelPortal:Q6ZWM4 SMR:Q6ZWM4
STRING:Q6ZWM4 PhosphoSite:Q6ZWM4 PaxDb:Q6ZWM4 PRIDE:Q6ZWM4
DNASU:76522 Ensembl:ENSMUST00000056398 GeneID:76522 KEGG:mmu:76522
UCSC:uc009bao.1 InParanoid:Q6ZWM4 NextBio:345314 Bgee:Q6ZWM4
Genevestigator:Q6ZWM4 GermOnline:ENSMUSG00000044155 Uniprot:Q6ZWM4
Length = 96
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 58/92 (63%), Positives = 77/92 (83%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
LE+ + + ++VIT+DGR IVG LKGFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 67 DNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 98
DN++++GE+DEE DS LDL N+RA PL V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>DICTYBASE|DDB_G0288479 [details] [associations]
symbol:lsm8 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0288479
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000111 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII RefSeq:XP_001134524.1
ProteinModelPortal:Q1ZXD5 STRING:Q1ZXD5 EnsemblProtists:DDB0233384
GeneID:8626646 KEGG:ddi:DDB_G0288479 Uniprot:Q1ZXD5
Length = 94
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 44/92 (47%), Positives = 74/92 (80%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
LES +++Q+ V+T DGR+I+G L+G DQ N++L++ HERVYS EG++ + LG+++I+G
Sbjct: 4 LESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSD-EGIEVIPLGVHLIKG 62
Query: 67 DNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 98
D+++++GEVD+ELD L+L + A P+KP++H
Sbjct: 63 DDVAVIGEVDDELDKKLNLKEIIAEPMKPIVH 94
>GENEDB_PFALCIPARUM|MAL8P1.9 [details] [associations]
symbol:MAL8P1.9 "u6 snRNA-associated sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0017070
"U6 snRNA binding" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017070
GO:GO:0005732 EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223549 KO:K12627 RefSeq:XP_002808886.1
ProteinModelPortal:C0H4Y9 EnsemblProtists:MAL8P1.9:mRNA
GeneID:2655440 KEGG:pfa:MAL8P1.9 EuPathDB:PlasmoDB:PF3D7_0829300
ProtClustDB:CLSZ2734129 Uniprot:C0H4Y9
Length = 95
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 45/92 (48%), Positives = 67/92 (72%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
+ES +E +I VITND R G LKGFDQ TNIIL HER+Y KE ++++ LG+YIIRG
Sbjct: 6 IESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCHERIY--KESMEKISLGVYIIRG 63
Query: 67 DNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 98
D ++++GE+DE++D ++ ++ LKP++H
Sbjct: 64 DTVTLIGEIDEDVDKNILHQKIKPQMLKPIVH 95
>UNIPROTKB|C0H4Y9 [details] [associations]
symbol:MAL8P1.9 "U6 snRNA-associated Sm-like protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=ISS] [GO:0017070 "U6
snRNA binding" evidence=ISS] INTERPRO:IPR001163 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017070 GO:GO:0005732
EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223549 KO:K12627 RefSeq:XP_002808886.1
ProteinModelPortal:C0H4Y9 EnsemblProtists:MAL8P1.9:mRNA
GeneID:2655440 KEGG:pfa:MAL8P1.9 EuPathDB:PlasmoDB:PF3D7_0829300
ProtClustDB:CLSZ2734129 Uniprot:C0H4Y9
Length = 95
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 45/92 (48%), Positives = 67/92 (72%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
+ES +E +I VITND R G LKGFDQ TNIIL HER+Y KE ++++ LG+YIIRG
Sbjct: 6 IESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCHERIY--KESMEKISLGVYIIRG 63
Query: 67 DNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 98
D ++++GE+DE++D ++ ++ LKP++H
Sbjct: 64 DTVTLIGEIDEDVDKNILHQKIKPQMLKPIVH 95
>POMBASE|SPCC1840.10 [details] [associations]
symbol:lsm8 "U6 snRNP-associated protein Lsm8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] PomBase:SPCC1840.10
INTERPRO:IPR001163 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0030532 GO:GO:0045292 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PIR:T41178 RefSeq:NP_588509.1
ProteinModelPortal:O74483 IntAct:O74483 STRING:O74483
EnsemblFungi:SPCC1840.10.1 GeneID:2539322 KEGG:spo:SPCC1840.10
eggNOG:NOG235625 HOGENOM:HOG000223549 KO:K12627 OMA:NHTVSII
OrthoDB:EOG48H0D6 NextBio:20800487 Uniprot:O74483
Length = 94
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 41/92 (44%), Positives = 67/92 (72%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L +EQ++ VITNDGR ++G LKGFD TN+IL +S ER+ S + ++ + LG+Y++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 67 DNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 98
+N+++VG V+EELDS ++ + +R + V+H
Sbjct: 63 ENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH 94
>TAIR|locus:2011246 [details] [associations]
symbol:LSM1A "SM-like 1A" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016070 "RNA metabolic process" evidence=IGI]
INTERPRO:IPR001163 EMBL:CP002684 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K12620 HSSP:Q8ZYG5 UniGene:At.15081
UniGene:At.22114 ProtClustDB:CLSN2687863 EMBL:AF411792
EMBL:AY094024 IPI:IPI00538869 RefSeq:NP_564072.1
ProteinModelPortal:Q945P8 SMR:Q945P8 STRING:Q945P8 PRIDE:Q945P8
EnsemblPlants:AT1G19120.1 GeneID:838495 KEGG:ath:AT1G19120
TAIR:At1g19120 InParanoid:Q945P8 OMA:AYERVIV PhylomeDB:Q945P8
Genevestigator:Q945P8 Uniprot:Q945P8
Length = 128
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 32/80 (40%), Positives = 56/80 (70%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L + +++++ V+ DGR ++G+L+ FDQ N +L+E++ERV + + LGLYIIRG
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIRG 73
Query: 67 DNISIVGEVD---EELDSHL 83
+N+ ++GE+D EEL +H+
Sbjct: 74 ENVVLIGELDVEKEELPAHM 93
>DICTYBASE|DDB_G0279837 [details] [associations]
symbol:lsm1 "LSM (like-Sm) domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
dictyBase:DDB_G0279837 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 GenomeReviews:CM000152_GR GO:GO:0006397 GO:GO:0000932
GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AAFI02000033
Pfam:PF01423 GO:GO:0000339 InterPro:IPR006649 SMART:SM00651
KO:K12620 OMA:IERIHVG RefSeq:XP_641509.1 HSSP:O26745
ProteinModelPortal:Q54W83 STRING:Q54W83 EnsemblProtists:DDB0233402
GeneID:8622249 KEGG:ddi:DDB_G0279837 eggNOG:COG1958
ProtClustDB:CLSZ2430662 Uniprot:Q54W83
Length = 129
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/78 (41%), Positives = 51/78 (65%)
Query: 1 MSGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
MS G G E V++++ V+ DGR +G+++ FDQ NI+L ++ ER+Y + LG
Sbjct: 1 MSSGLGDE--VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIY-VGDCYSDKNLG 57
Query: 61 LYIIRGDNISIVGEVDEE 78
L+ IRGDN+ I+GE+D +
Sbjct: 58 LFFIRGDNVVILGEIDPD 75
>TAIR|locus:2087522 [details] [associations]
symbol:LSM1B "SM-like 1B" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016070 "RNA metabolic process" evidence=IGI]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223544 KO:K12620 eggNOG:COG1958
HSSP:Q8ZYG5 EMBL:AY084768 EMBL:BT002795 EMBL:BT004340
IPI:IPI00537844 RefSeq:NP_566476.1 RefSeq:NP_850580.1
UniGene:At.39294 ProteinModelPortal:Q8LFL8 SMR:Q8LFL8 IntAct:Q8LFL8
STRING:Q8LFL8 PaxDb:Q8LFL8 PRIDE:Q8LFL8 EnsemblPlants:AT3G14080.1
EnsemblPlants:AT3G14080.2 GeneID:820624 KEGG:ath:AT3G14080
TAIR:At3g14080 InParanoid:Q8LFL8 OMA:TEREELP PhylomeDB:Q8LFL8
ProtClustDB:CLSN2687863 ArrayExpress:Q8LFL8 Genevestigator:Q8LFL8
Uniprot:Q8LFL8
Length = 128
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L S +++++ V+ DGR ++G L+ FDQ N +L+ + ERV E + LGLY+IRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRG 73
Query: 67 DNISIVGEVD---EELDSHL 83
+N+ ++GE+D EEL H+
Sbjct: 74 ENVVLIGELDTEREELPPHM 93
>CGD|CAL0004008 [details] [associations]
symbol:orf19.7290 species:5476 "Candida albicans" [GO:0000339
"RNA cap binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005845 "mRNA cap binding complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0000290 "deadenylation-dependent decapping
of nuclear-transcribed mRNA" evidence=IEA] CGD:CAL0004008
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AACQ01000069 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12620 eggNOG:COG1958 RefSeq:XP_716425.1
ProteinModelPortal:Q5A417 STRING:Q5A417 GeneID:3641913
KEGG:cal:CaO19.7290 Uniprot:Q5A417
Length = 167
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 29/80 (36%), Positives = 54/80 (67%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEG-----VQQLVLGLYIIR 65
V+++I V+ DGRN+ G+L+ FDQ N++L ++ ER+Y +EG + G++++R
Sbjct: 41 VDRKIFVLLKDGRNLFGILRTFDQFANLVLQDTLERIYLGEEGEAPTRFSETYRGVFMVR 100
Query: 66 GDNISIVGEVDEEL-DSHLD 84
G+N+ ++GE+D + D HL+
Sbjct: 101 GENVVMLGEMDIDTEDDHLE 120
>POMBASE|SPBC3D6.08c [details] [associations]
symbol:lsm1 "mRNA decapping complex subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000339 "RNA cap binding" evidence=ISO]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005845 "mRNA
cap binding complex" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] PomBase:SPBC3D6.08c INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005634 GO:GO:0008380 EMBL:CU329671 GO:GO:0006397
GenomeReviews:CU329671_GR GO:GO:0006396 GO:GO:0000932 GO:GO:0005845
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000290 Pfam:PF01423
GO:GO:0000339 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223544
KO:K12620 eggNOG:COG1958 PIR:T40368 RefSeq:NP_595520.1
ProteinModelPortal:P87173 STRING:P87173 EnsemblFungi:SPBC3D6.08c.1
GeneID:2540520 KEGG:spo:SPBC3D6.08c OMA:YTIERIY OrthoDB:EOG4GQTF9
NextBio:20801647 Uniprot:P87173
Length = 140
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 30/92 (32%), Positives = 57/92 (61%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L V++++ V+ DG+ ++G+L+ FDQ N++L + ER+Y + + G+YI+RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIY-VDDMYGDIDRGVYIVRG 74
Query: 67 DNISIVGEVD--EELDSHLDLSNLRAHPLKPV 96
+N+ ++GE+D +E D+ L + A L P+
Sbjct: 75 ENVVLLGELDLDKEYDAVKQLRRMPAEELYPL 106
>UNIPROTKB|G4MST0 [details] [associations]
symbol:MGG_04539 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12627 RefSeq:XP_003713591.1 ProteinModelPortal:G4MST0
EnsemblFungi:MGG_04539T0 GeneID:2678209 KEGG:mgr:MGG_04539
Uniprot:G4MST0
Length = 101
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 34/91 (37%), Positives = 52/91 (57%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLV----LGLY 62
L S V++++ ++T DGR ++G L D NIIL ER + +G + V +G
Sbjct: 5 LNSYVDKRVVIMTTDGRMLIGTLINSDNQANIILYNVTERHIAPADGDEDSVDRPSVGTE 64
Query: 63 IIRGDNISIVGEVDEELDSHLDLSNLRAHPL 93
IIRG I +VG VDEEL+ +D + +R P+
Sbjct: 65 IIRGSTILVVGLVDEELEGSIDWTKVRGEPI 95
>FB|FBgn0261067 [details] [associations]
symbol:LSm1 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IMP] INTERPRO:IPR001163 EMBL:AE013599
GO:GO:0005681 GO:GO:0000398 GO:GO:0033962 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27257 GeneTree:ENSGT00570000079167 KO:K12620
OMA:IERIHVG HSSP:Q8ZYG5 EMBL:BT022249 RefSeq:NP_611559.1
UniGene:Dm.26990 SMR:Q9W2K2 IntAct:Q9W2K2 MINT:MINT-289058
STRING:Q9W2K2 EnsemblMetazoa:FBtr0071628 GeneID:37413
KEGG:dme:Dmel_CG4279 UCSC:CG4279-RA FlyBase:FBgn0261067
InParanoid:Q9W2K2 OrthoDB:EOG4GTHWB GenomeRNAi:37413 NextBio:803505
Uniprot:Q9W2K2
Length = 137
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 28/88 (31%), Positives = 53/88 (60%)
Query: 1 MSGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
++G L V++++ V+ DGR ++G L+ DQ N++L + ER++ E + G
Sbjct: 7 LAGTAHLLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIHVGNE-YGDIPRG 65
Query: 61 LYIIRGDNISIVGEVDEELDSHLDLSNL 88
++IIRG+N+ ++GE+D E + L L +
Sbjct: 66 VFIIRGENVVLLGEIDREKEQKLPLKEI 93
>SGD|S000003660 [details] [associations]
symbol:LSM1 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000339 "RNA cap binding"
evidence=IGI;IMP;IPI] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA;IMP;IDA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI;IMP]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IGI;IMP;IPI] [GO:0005845 "mRNA
cap binding complex" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] SGD:S000003660 INTERPRO:IPR001163 GO:GO:0005634
EMBL:BK006943 GO:GO:0006397 GO:GO:0000932 GO:GO:0005845
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000290 Pfam:PF01423
GO:GO:0000339 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544 KO:K12620
eggNOG:COG1958 OrthoDB:EOG4GQTF9 EMBL:Z49399 EMBL:AY558307
PIR:S56905 RefSeq:NP_012411.1 ProteinModelPortal:P47017 SMR:P47017
DIP:DIP-1330N IntAct:P47017 MINT:MINT-390497 STRING:P47017
PaxDb:P47017 PeptideAtlas:P47017 EnsemblFungi:YJL124C GeneID:853318
KEGG:sce:YJL124C CYGD:YJL124c OMA:FMVRGEN NextBio:973666
Genevestigator:P47017 GermOnline:YJL124C Uniprot:P47017
Length = 172
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 31/78 (39%), Positives = 53/78 (67%)
Query: 9 SLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEG-VQQLVLGLYIIRGD 67
S V+++I V+ DGR + GVL+ FDQ N+IL + ER+Y ++E + G+++IRG+
Sbjct: 48 SSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGE 107
Query: 68 NISIVGEVD-EELDSHLD 84
N+ ++GEVD ++ D L+
Sbjct: 108 NVVMLGEVDIDKEDQPLE 125
>ZFIN|ZDB-GENE-040801-68 [details] [associations]
symbol:lsm1 "LSM1 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040801-68 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27257
eggNOG:NOG236501 GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544
HOVERGEN:HBG027238 KO:K12620 OMA:IERIHVG OrthoDB:EOG4BRWN3
EMBL:CR931937 EMBL:BC078334 IPI:IPI00505530 RefSeq:NP_001003551.1
UniGene:Dr.76743 STRING:Q6DBW5 Ensembl:ENSDART00000063392
GeneID:445157 KEGG:dre:445157 InParanoid:Q6DBW5 NextBio:20831919
Uniprot:Q6DBW5
Length = 133
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 29/83 (34%), Positives = 53/83 (63%)
Query: 5 PGLESLVE---QQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGL 61
PG SL+E ++ V+ DGR ++G+L+ DQ N++L ++ ER++ K+ + G+
Sbjct: 5 PGTASLIEDIDKKHLVLLRDGRTLIGILRSIDQFANLVLHQTVERIHVGKK-FGDIPRGI 63
Query: 62 YIIRGDNISIVGEVDEELDSHLD 84
+++RG+N+ ++GEVD LD D
Sbjct: 64 FVVRGENVVLLGEVD--LDKECD 84
>UNIPROTKB|Q5E9Z8 [details] [associations]
symbol:LSM1 "U6 snRNA-associated Sm-like protein LSm1"
species:9913 "Bos taurus" [GO:0071044 "histone mRNA catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 GO:GO:0071044 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
EMBL:BT020738 EMBL:BT020771 EMBL:BT020779 IPI:IPI00696891
RefSeq:NP_001017952.1 UniGene:Bt.2005 ProteinModelPortal:Q5E9Z8
STRING:Q5E9Z8 Ensembl:ENSBTAT00000002113 GeneID:535447
KEGG:bta:535447 CTD:27257 eggNOG:NOG236501
GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544
HOVERGEN:HBG027238 InParanoid:Q5E9Z8 KO:K12620 OMA:IERIHVG
OrthoDB:EOG4BRWN3 NextBio:20876751 ArrayExpress:Q5E9Z8
Uniprot:Q5E9Z8
Length = 133
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 28/87 (32%), Positives = 54/87 (62%)
Query: 5 PGLESLVE---QQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGL 61
PG SL+E ++ V+ DGR ++G L+ DQ N++L ++ ER++ K+ + G+
Sbjct: 5 PGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGI 63
Query: 62 YIIRGDNISIVGEVDEELDSHLDLSNL 88
+++RG+N+ ++GE+D E +S L +
Sbjct: 64 FVVRGENVVLLGEIDLEKESDTPLQQV 90
>UNIPROTKB|E2R7S6 [details] [associations]
symbol:LSM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0005737 GO:GO:0071044 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27257
GeneTree:ENSGT00570000079167 KO:K12620 OMA:IERIHVG
EMBL:AAEX03010393 RefSeq:XP_532806.3 ProteinModelPortal:E2R7S6
SMR:E2R7S6 PRIDE:E2R7S6 Ensembl:ENSCAFT00000009901 GeneID:475587
KEGG:cfa:475587 NextBio:20851398 Uniprot:E2R7S6
Length = 133
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 28/87 (32%), Positives = 54/87 (62%)
Query: 5 PGLESLVE---QQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGL 61
PG SL+E ++ V+ DGR ++G L+ DQ N++L ++ ER++ K+ + G+
Sbjct: 5 PGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGI 63
Query: 62 YIIRGDNISIVGEVDEELDSHLDLSNL 88
+++RG+N+ ++GE+D E +S L +
Sbjct: 64 FVVRGENVVLLGEIDLEKESDTPLQQV 90
>UNIPROTKB|O15116 [details] [associations]
symbol:LSM1 "U6 snRNA-associated Sm-like protein LSm1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=TAS]
[GO:0071044 "histone mRNA catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 EMBL:AF000177 INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005634 EMBL:CH471080 GO:GO:0006397 GO:GO:0003723
GO:GO:0030529 GO:GO:0071044 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0000375 GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27257 eggNOG:NOG236501 HOGENOM:HOG000223544
HOVERGEN:HBG027238 KO:K12620 OMA:IERIHVG OrthoDB:EOG4BRWN3
EMBL:AJ238094 EMBL:AK312159 EMBL:BC001767 IPI:IPI00004436
RefSeq:NP_055277.1 UniGene:Hs.425311 ProteinModelPortal:O15116
SMR:O15116 DIP:DIP-31130N IntAct:O15116 MINT:MINT-1036791
STRING:O15116 PhosphoSite:O15116 PaxDb:O15116 PeptideAtlas:O15116
PRIDE:O15116 DNASU:27257 Ensembl:ENST00000311351 GeneID:27257
KEGG:hsa:27257 UCSC:uc003xkw.3 GeneCards:GC08M038020
HGNC:HGNC:20472 HPA:HPA024601 MIM:607281 neXtProt:NX_O15116
PharmGKB:PA134864226 InParanoid:O15116 PhylomeDB:O15116
GenomeRNAi:27257 NextBio:50202 ArrayExpress:O15116 Bgee:O15116
CleanEx:HS_LSM1 Genevestigator:O15116 GermOnline:ENSG00000175324
Uniprot:O15116
Length = 133
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 28/87 (32%), Positives = 54/87 (62%)
Query: 5 PGLESLVE---QQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGL 61
PG SL+E ++ V+ DGR ++G L+ DQ N++L ++ ER++ K+ + G+
Sbjct: 5 PGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGI 63
Query: 62 YIIRGDNISIVGEVDEELDSHLDLSNL 88
+++RG+N+ ++GE+D E +S L +
Sbjct: 64 FVVRGENVVLLGEIDLEKESDTPLQQV 90
>UNIPROTKB|I3LCU8 [details] [associations]
symbol:LSM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0005737
GO:GO:0071044 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 GeneTree:ENSGT00570000079167
OMA:IERIHVG EMBL:FP565893 Ensembl:ENSSSCT00000027118 Uniprot:I3LCU8
Length = 133
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 28/87 (32%), Positives = 54/87 (62%)
Query: 5 PGLESLVE---QQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGL 61
PG SL+E ++ V+ DGR ++G L+ DQ N++L ++ ER++ K+ + G+
Sbjct: 5 PGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGI 63
Query: 62 YIIRGDNISIVGEVDEELDSHLDLSNL 88
+++RG+N+ ++GE+D E +S L +
Sbjct: 64 FVVRGENVVLLGEIDLEKESDTPLQQV 90
>MGI|MGI:1914457 [details] [associations]
symbol:Lsm1 "LSM1 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=ISO] MGI:MGI:1914457 INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 GO:GO:0071044 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
CTD:27257 eggNOG:NOG236501 GeneTree:ENSGT00570000079167
HOGENOM:HOG000223544 HOVERGEN:HBG027238 KO:K12620 OMA:IERIHVG
OrthoDB:EOG4BRWN3 EMBL:BC021460 IPI:IPI00121579 RefSeq:NP_080308.1
UniGene:Mm.30198 ProteinModelPortal:Q8VC85 SMR:Q8VC85 STRING:Q8VC85
PhosphoSite:Q8VC85 REPRODUCTION-2DPAGE:Q8VC85 PaxDb:Q8VC85
PRIDE:Q8VC85 DNASU:67207 Ensembl:ENSMUST00000038421 GeneID:67207
KEGG:mmu:67207 InParanoid:Q8VC85 NextBio:323882 Bgee:Q8VC85
Genevestigator:Q8VC85 GermOnline:ENSMUSG00000037296 Uniprot:Q8VC85
Length = 133
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 28/87 (32%), Positives = 54/87 (62%)
Query: 5 PGLESLVE---QQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGL 61
PG SL+E ++ V+ DGR ++G L+ DQ N++L ++ ER++ K+ + G+
Sbjct: 5 PGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGI 63
Query: 62 YIIRGDNISIVGEVDEELDSHLDLSNL 88
+++RG+N+ ++GE+D E +S L +
Sbjct: 64 FVVRGENVVLLGEIDLEKESDTPLQQV 90
>RGD|1304967 [details] [associations]
symbol:Lsm1 "LSM1 homolog, U6 small nuclear RNA associated (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA;ISO] RGD:1304967 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0005737 EMBL:CH473970 GO:GO:0071044 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
CTD:27257 GeneTree:ENSGT00570000079167 KO:K12620 OMA:IERIHVG
OrthoDB:EOG4BRWN3 IPI:IPI00359977 RefSeq:NP_001102346.1
UniGene:Rn.128606 Ensembl:ENSRNOT00000020721 GeneID:364624
KEGG:rno:364624 UCSC:RGD:1304967 NextBio:685701 Uniprot:D3ZWB1
Length = 133
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 5 PGLESLVE---QQISVITNDGRNIVGVLKGFDQATNIILDESHERVY-STKEGVQQLVLG 60
PG SL+E ++ V+ DGR ++G L+ DQ N++L ++ ER++ K G + G
Sbjct: 5 PGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGRKYG--DIPRG 62
Query: 61 LYIIRGDNISIVGEVDEELDSHLDLSNL 88
++++RG+N+ ++GE+D E +S L +
Sbjct: 63 IFVVRGENVVLLGEIDLEKESDTPLQQV 90
>WB|WBGene00003076 [details] [associations]
symbol:lsm-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] INTERPRO:IPR001163
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0000932
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG236501 GeneTree:ENSGT00570000079167
HOGENOM:HOG000223544 KO:K12620 EMBL:Z69302 PIR:T22035
RefSeq:NP_496385.1 HSSP:Q8ZYG5 ProteinModelPortal:Q20229 SMR:Q20229
STRING:Q20229 PaxDb:Q20229 EnsemblMetazoa:F40F8.9 GeneID:174700
KEGG:cel:CELE_F40F8.9 UCSC:F40F8.9 CTD:174700 WormBase:F40F8.9
InParanoid:Q20229 OMA:YYSEISH NextBio:885130 Uniprot:Q20229
Length = 125
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 5 PGLESLVEQ---QISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGL 61
PG SL EQ ++ V+ DGR ++G L+ DQ N+IL++ ER + K + G
Sbjct: 9 PGAISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCET-GQGF 67
Query: 62 YIIRGDNISIVGEVDEELDSHL 83
+IRG+N+ + GE+D+ +++ L
Sbjct: 68 MLIRGENVELAGEIDDTIETGL 89
>POMBASE|SPCC285.12 [details] [associations]
symbol:lsm7 "U6 snRNP-associated protein Lsm7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0030490 "maturation of
SSU-rRNA" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] PomBase:SPCC285.12 INTERPRO:IPR001163
GO:GO:0005829 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0008033 GO:GO:0006402 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490 GO:GO:0045292
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PDB:3SWN PDB:4EMK PDBsum:3SWN PDBsum:4EMK eggNOG:NOG276686
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 PIR:T41258 RefSeq:NP_588340.1
ProteinModelPortal:O74499 STRING:O74499 EnsemblFungi:SPCC285.12.1
GeneID:2538964 KEGG:spo:SPCC285.12 OrthoDB:EOG4BGD5N
EvolutionaryTrace:O74499 NextBio:20800139 Uniprot:O74499
Length = 113
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 12 EQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEG-VQQLV--LGLYIIRGDN 68
+Q+I GR I G+LKGFDQ N++LD+ E++ + ++G + + LGL ++RG
Sbjct: 33 DQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTT 92
Query: 69 ISIVGEVD--EEL 79
+ ++ +D EE+
Sbjct: 93 LVLIAPMDGSEEI 105
>ASPGD|ASPL0000049189 [details] [associations]
symbol:AN1495 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:BN001307 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
EMBL:AACD01000023 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223546 KO:K11099 OMA:VVIMEPK OrthoDB:EOG4XWK7N
RefSeq:XP_659099.1 ProteinModelPortal:Q5BD85 STRING:Q5BD85
EnsemblFungi:CADANIAT00008119 GeneID:2874980 KEGG:ani:AN1495.2
Uniprot:Q5BD85
Length = 78
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 22/65 (33%), Positives = 42/65 (64%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +E+++ N R ++GVL+G+D NI+LDE+ E K G +++ +G+ +I
Sbjct: 6 PELKKYMEKRVFCELNGNRKVIGVLRGYDVFMNIVLDEAFEE----KPGGEKVAIGMIVI 61
Query: 65 RGDNI 69
RG+++
Sbjct: 62 RGNSV 66
>SGD|S000000831 [details] [associations]
symbol:SMB1 "Core Sm protein Sm B" species:4932
"Saccharomyces cerevisiae" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IPI] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA] [GO:0071004
"U2-type prespliceosome" evidence=IDA] SGD:S000000831
INTERPRO:IPR001163 GO:GO:0005682 GO:GO:0003723 EMBL:BK006939
EMBL:U18778 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0071004 RefSeq:NP_010949.4 GeneID:856754
KEGG:sce:YER032W Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 GO:GO:0005685 RefSeq:NP_010946.3 GeneID:856751
KEGG:sce:YER029C KO:K11086 HOGENOM:HOG000188899
GeneTree:ENSGT00670000098029 OrthoDB:EOG4JMC0B EMBL:AY558450
PIR:S50487 ProteinModelPortal:P40018 SMR:P40018 DIP:DIP-843N
IntAct:P40018 MINT:MINT-515980 STRING:P40018 PaxDb:P40018
PeptideAtlas:P40018 EnsemblFungi:YER029C CYGD:YER029c OMA:RGEQILS
NextBio:982902 Genevestigator:P40018 GermOnline:YER029C
Uniprot:P40018
Length = 196
Score = 86 (35.3 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDES-HERVYSTK 51
L +L++ ++ V+T DGR +G L FD+ N++L+E ERV T+
Sbjct: 12 LANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQ 57
Score = 45 (20.9 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 54 VQQLVLGLYIIRGDNI-SIVGEVDEEL 79
V++ VLGL I+RG+ I S V E D+ L
Sbjct: 77 VEKRVLGLTILRGEQILSTVVE-DKPL 102
>UNIPROTKB|Q3ZBL0 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOVERGEN:HBG000513 OrthoDB:EOG4BRWND KO:K11099 EMBL:BC103236
IPI:IPI00688337 RefSeq:NP_001035633.1 UniGene:Bt.70615
ProteinModelPortal:Q3ZBL0 SMR:Q3ZBL0 STRING:Q3ZBL0 PRIDE:Q3ZBL0
Ensembl:ENSBTAT00000007241 GeneID:522621 KEGG:bta:522621 CTD:6637
GeneTree:ENSGT00510000046985 InParanoid:Q3ZBL0 OMA:ESVEMAP
NextBio:20873564 Uniprot:Q3ZBL0
Length = 76
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++++S+ N GR++ G+L+GFD N+++DE E S G QQ +G+ +I
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS---G-QQNNIGMVVI 62
Query: 65 RGDNI 69
RG++I
Sbjct: 63 RGNSI 67
>UNIPROTKB|P62308 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=NAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0005683 "U7 snRNP"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0000387 "spliceosomal snRNP assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471053 GO:GO:0005654
Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 HOVERGEN:HBG000513
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
UniGene:Hs.631639 KO:K11099 CTD:6637 OMA:ESVEMAP EMBL:X85373
EMBL:CR456918 EMBL:AC079338 EMBL:BC000070 EMBL:BC022432
EMBL:BC066302 EMBL:BC070166 EMBL:BC071880 EMBL:BC106055
IPI:IPI00016572 PIR:S55054 RefSeq:NP_003087.1 UniGene:Hs.465167
UniGene:Hs.516076 UniGene:Hs.654528 ProteinModelPortal:P62308
SMR:P62308 DIP:DIP-34627N IntAct:P62308 MINT:MINT-1527983
STRING:P62308 PhosphoSite:P62308 DMDM:59800216 PeptideAtlas:P62308
PRIDE:P62308 DNASU:6637 Ensembl:ENST00000272348 GeneID:6637
KEGG:hsa:6637 UCSC:uc002sgp.3 GeneCards:GC02M070508 HGNC:HGNC:11163
MIM:603542 neXtProt:NX_P62308 PharmGKB:PA36004 InParanoid:P62308
PhylomeDB:P62308 ChiTaRS:SNRPG EvolutionaryTrace:P62308
GenomeRNAi:6637 NextBio:25857 ArrayExpress:P62308 Bgee:P62308
CleanEx:HS_SNRPG Genevestigator:P62308 GermOnline:ENSG00000143977
Uniprot:P62308
Length = 76
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++++S+ N GR++ G+L+GFD N+++DE E S G QQ +G+ +I
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS---G-QQNNIGMVVI 62
Query: 65 RGDNI 69
RG++I
Sbjct: 63 RGNSI 67
>UNIPROTKB|F2Z5V2 [details] [associations]
symbol:LOC100525867 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K11099
GeneTree:ENSGT00510000046985 OMA:ESVEMAP EMBL:FP476045
RefSeq:XP_003125100.1 UniGene:Ssc.27001 ProteinModelPortal:F2Z5V2
SMR:F2Z5V2 PRIDE:F2Z5V2 Ensembl:ENSSSCT00000031595 GeneID:100525867
KEGG:ssc:100525867 Uniprot:F2Z5V2
Length = 76
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++++S+ N GR++ G+L+GFD N+++DE E S G QQ +G+ +I
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS---G-QQNNIGMVVI 62
Query: 65 RGDNI 69
RG++I
Sbjct: 63 RGNSI 67
>RGD|1584713 [details] [associations]
symbol:Snrpg "small nuclear ribonucleoprotein polypeptide G"
species:10116 "Rattus norvegicus" [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] RGD:1584713 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:CH473957 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
KO:K11099 CTD:6637 GeneTree:ENSGT00510000046985 OMA:ESVEMAP
EMBL:BC168750 IPI:IPI00211261 RefSeq:NP_001128557.1
RefSeq:XP_001079708.1 RefSeq:XP_003748887.1 UniGene:Rn.2397
SMR:B5DEP7 STRING:B5DEP7 Ensembl:ENSRNOT00000022367 GeneID:681031
GeneID:687679 KEGG:rno:681031 KEGG:rno:687679 UCSC:RGD:1584713
RGD:2321722 NextBio:720014 Genevestigator:B5DEP7 Uniprot:B5DEP7
Length = 76
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++++S+ N GR++ G+L+GFD N+++DE E S G QQ +G+ +I
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS---G-QQNNIGMVVI 62
Query: 65 RGDNI 69
RG++I
Sbjct: 63 RGNSI 67
>ASPGD|ASPL0000056132 [details] [associations]
symbol:AN0767 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163 EMBL:BN001308
GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AACD01000012 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 OrthoDB:EOG4BGD5N
RefSeq:XP_658371.1 ProteinModelPortal:Q5BFB3 STRING:Q5BFB3
EnsemblFungi:CADANIAT00001898 GeneID:2876542 KEGG:ani:AN0767.2
Uniprot:Q5BFB3
Length = 136
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L +++++ V N GR + G+LKG+DQ N++LD+ E + + LGL + RG
Sbjct: 53 LTKYMDKEVRVKFNGGREVSGILKGYDQLMNLVLDDVKESMRDDEGNETTRALGLIVARG 112
Query: 67 DNISIVGEVD 76
I ++ D
Sbjct: 113 TLIVLISPAD 122
>UNIPROTKB|G4NLE3 [details] [associations]
symbol:MGG_02938 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:CM001237 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 InterPro:IPR017132 PIRSF:PIRSF037188
RefSeq:XP_003720770.1 ProteinModelPortal:G4NLE3
EnsemblFungi:MGG_02938T0 GeneID:2682491 KEGG:mgr:MGG_02938
Uniprot:G4NLE3
Length = 146
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L +++++ V N GR ++G LKG+D N++LDE E + + LGL ++RG
Sbjct: 61 LAKYMDKEVQVKFNGGREVIGTLKGYDALMNLVLDEVKETMRDEEGNESSRPLGLVVVRG 120
Query: 67 DNISIVGEVD 76
+ + D
Sbjct: 121 TLLVAISPTD 130
>ZFIN|ZDB-GENE-040912-105 [details] [associations]
symbol:zgc:103688 "zgc:103688" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040912-105 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
HOGENOM:HOG000223546 KO:K11099 EMBL:BC081512 IPI:IPI00482230
RefSeq:NP_001004660.2 RefSeq:NP_001161373.1 UniGene:Dr.83589
ProteinModelPortal:Q66I63 STRING:Q66I63 PRIDE:Q66I63 GeneID:447922
KEGG:dre:447922 InParanoid:Q66I63 NextBio:20832442
ArrayExpress:Q66I63 Bgee:Q66I63 Uniprot:Q66I63
Length = 76
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 21/65 (32%), Positives = 42/65 (64%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++++S+ N GR++ G+L+GFD N+++D++ E G Q +G+ +I
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMA----PGGQMNTIGMVVI 62
Query: 65 RGDNI 69
RG++I
Sbjct: 63 RGNSI 67
>POMBASE|SPBC4B4.05 [details] [associations]
symbol:smg1 "U4/U6 x U5 tri-snRNP complex Sm snRNP core
protein Smg1" species:4896 "Schizosaccharomyces pombe" [GO:0000395
"mRNA 5'-splice site recognition" evidence=IC] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IC] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISS]
PomBase:SPBC4B4.05 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
GO:GO:0000395 HOGENOM:HOG000223546 KO:K11099 OMA:DLFLNVV PIR:T40477
RefSeq:NP_596422.1 ProteinModelPortal:O74966 IntAct:O74966
STRING:O74966 EnsemblFungi:SPBC4B4.05.1 GeneID:2540855
KEGG:spo:SPBC4B4.05 OrthoDB:EOG4XWK7N NextBio:20801971
Uniprot:O74966
Length = 77
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 23/76 (30%), Positives = 46/76 (60%)
Query: 2 SGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGL 61
+G P L+ +++Q+ V N R + GVL+G+D NI+L++S E K +++ +G
Sbjct: 4 AGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEE----KVDGEKVKIGS 59
Query: 62 YIIRGDNISIVGEVDE 77
IRG+++ ++ +D+
Sbjct: 60 VAIRGNSVIMIETLDK 75
>UNIPROTKB|G4MXF4 [details] [associations]
symbol:MGG_10740 "Sm snRNP core protein Smg1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 EMBL:CM001232
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11099 RefSeq:XP_003713291.1
ProteinModelPortal:G4MXF4 EnsemblFungi:MGG_10740T0 GeneID:2676245
KEGG:mgr:MGG_10740 Uniprot:G4MXF4
Length = 88
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 20/65 (30%), Positives = 43/65 (66%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++++ V N R +VGV++G+D NI+L+++ E K+G +++ +G +I
Sbjct: 6 PELKKYLDKKVFVQLNGSRKVVGVVRGYDVFLNIVLEDAFEE----KDGGEKVKIGTVVI 61
Query: 65 RGDNI 69
RG+++
Sbjct: 62 RGNSV 66
>DICTYBASE|DDB_G0289499 [details] [associations]
symbol:lsm7 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0289499
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000141 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
RefSeq:XP_636181.1 HSSP:O29386 ProteinModelPortal:Q54HF6
STRING:Q54HF6 EnsemblProtists:DDB0233196 GeneID:8627168
KEGG:ddi:DDB_G0289499 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 Uniprot:Q54HF6
Length = 97
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGV----QQLVLGLY 62
L+ + ++I V GR + G+LKG+DQ NI LD++ E + ++ + ++ LGL
Sbjct: 15 LQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGLV 74
Query: 63 IIRGDNISIV 72
+ RG ++ +V
Sbjct: 75 VCRGSSVMMV 84
>FB|FBgn0261791 [details] [associations]
symbol:SmG "Small ribonucleoprotein particle protein SmG"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] INTERPRO:IPR001163
GO:GO:0007052 EMBL:AE014298 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
EMBL:AY070698 EMBL:AY113538 RefSeq:NP_001138209.1
RefSeq:NP_573139.1 UniGene:Dm.19721 ProteinModelPortal:Q9VXE0
SMR:Q9VXE0 DIP:DIP-20715N IntAct:Q9VXE0 MINT:MINT-288468
STRING:Q9VXE0 PaxDb:Q9VXE0 PRIDE:Q9VXE0 EnsemblMetazoa:FBtr0074377
EnsemblMetazoa:FBtr0112993 GeneID:32636 KEGG:dme:Dmel_CG9742
CTD:32636 FlyBase:FBgn0261791 InParanoid:Q9VXE0 OrthoDB:EOG4GXD4H
PhylomeDB:Q9VXE0 ChiTaRS:SAMD4A GenomeRNAi:32636 NextBio:779578
Bgee:Q9VXE0 GermOnline:CG9742 Uniprot:Q9VXE0
Length = 76
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 22/73 (30%), Positives = 45/73 (61%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVY-STKEGVQQLVLGLYI 63
P ++ +++++ + N GR + G+L+GFD N++LD++ E +TK + G+ +
Sbjct: 7 PEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNI-----GMVV 61
Query: 64 IRGDNISIVGEVD 76
IRG++I +V +D
Sbjct: 62 IRGNSIVMVEALD 74
>UNIPROTKB|A8MWD9 [details] [associations]
symbol:A8MWD9 "Small nuclear ribonucleoprotein G-like
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC012318 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 EMBL:CK005235
IPI:IPI00745343 UniGene:Hs.631639 ProteinModelPortal:A8MWD9
SMR:A8MWD9 STRING:A8MWD9 PaxDb:A8MWD9 PRIDE:A8MWD9
neXtProt:NX_A8MWD9 InParanoid:A8MWD9 OrthoDB:EOG4BRWND
ArrayExpress:A8MWD9 Bgee:A8MWD9 Genevestigator:A8MWD9
Uniprot:A8MWD9
Length = 76
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++ S+ N GR++ G+L+GFD N+++DE E S G QQ +G+ I
Sbjct: 7 PELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS---G-QQKNIGMVEI 62
Query: 65 RGDNI 69
RG++I
Sbjct: 63 RGNSI 67
>TAIR|locus:2056825 [details] [associations]
symbol:EMB2816 "AT2G03870" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002685 GenomeReviews:CT485783_GR InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O29386 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 HOGENOM:HOG000223548
EMBL:AC007196 EMBL:BT003087 EMBL:AK227358 IPI:IPI00526989
PIR:B84453 RefSeq:NP_178480.1 RefSeq:NP_849931.1 UniGene:At.41365
ProteinModelPortal:Q9SI54 SMR:Q9SI54 IntAct:Q9SI54 STRING:Q9SI54
PaxDb:Q9SI54 PRIDE:Q9SI54 ProMEX:Q9SI54 DNASU:814913
EnsemblPlants:AT2G03870.1 EnsemblPlants:AT2G03870.2 GeneID:814913
KEGG:ath:AT2G03870 TAIR:At2g03870 InParanoid:Q9SI54
PhylomeDB:Q9SI54 ProtClustDB:CLSN2683856 ArrayExpress:Q9SI54
Genevestigator:Q9SI54 Uniprot:Q9SI54
Length = 99
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGV----QQLVLGLY 62
L V++ + V GR + G LKG+DQ N++LDE+ E V + + Q LGL
Sbjct: 11 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLI 70
Query: 63 IIRGDNISIVGEVD--EEL 79
+ RG + +V D EE+
Sbjct: 71 VCRGTAVMLVSPTDGTEEI 89
>GENEDB_PFALCIPARUM|MAL8P1.48 [details] [associations]
symbol:MAL8P1.48 "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844507 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223546 KO:K11099
OMA:DLFLNVV HSSP:O29885 RefSeq:XP_001349302.1
ProteinModelPortal:Q8IB57 EnsemblProtists:MAL8P1.48:mRNA
GeneID:2655346 KEGG:pfa:MAL8P1.48 EuPathDB:PlasmoDB:PF3D7_0822300
ProtClustDB:CLSZ2432380 Uniprot:Q8IB57
Length = 83
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 22/69 (31%), Positives = 43/69 (62%)
Query: 4 GPGLE--SLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGL 61
GP + +E+++ + N R +VG+L+G+D N++LD + E K+ +Q+ +G+
Sbjct: 9 GPASDFRKFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLDNTME----IKKD-EQIDIGV 63
Query: 62 YIIRGDNIS 70
+IRG++IS
Sbjct: 64 VVIRGNSIS 72
>WB|WBGene00003081 [details] [associations]
symbol:lsm-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKE----GVQQLVLGLY 62
L ++++I V GR GVL+GFDQ N++LD+ E + + G + LGL
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLI 75
Query: 63 IIRGDNISIVGEVD 76
+ RG I++V D
Sbjct: 76 VARGTAITVVSPAD 89
>WB|WBGene00004920 [details] [associations]
symbol:snr-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0043186 "P
granule" evidence=IDA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0016246 GO:GO:0008380
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003723
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
EMBL:FO081276 HOGENOM:HOG000223546 KO:K11099
GeneTree:ENSGT00510000046985 EMBL:AF303264 RefSeq:NP_491032.1
UniGene:Cel.19416 ProteinModelPortal:Q9N4G9 SMR:Q9N4G9
IntAct:Q9N4G9 STRING:Q9N4G9 PaxDb:Q9N4G9 EnsemblMetazoa:Y71F9B.4.1
EnsemblMetazoa:Y71F9B.4.2 GeneID:171834 KEGG:cel:CELE_Y71F9B.4
UCSC:Y71F9B.4 CTD:171834 WormBase:Y71F9B.4 InParanoid:Q9N4G9
OMA:VVIMEPK NextBio:872901 Uniprot:Q9N4G9
Length = 77
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 22/68 (32%), Positives = 44/68 (64%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++++ + N R + G+L+GFD N+++DE+ E Y K+G + LG+ +I
Sbjct: 7 PELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVE--YQ-KDG-GSVNLGMTVI 62
Query: 65 RGDNISIV 72
RG+++ I+
Sbjct: 63 RGNSVVIM 70
>UNIPROTKB|Q23543 [details] [associations]
symbol:lsm-7 "Protein LSM-7" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKE----GVQQLVLGLY 62
L ++++I V GR GVL+GFDQ N++LD+ E + + G + LGL
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLI 75
Query: 63 IIRGDNISIVGEVD 76
+ RG I++V D
Sbjct: 76 VARGTAITVVSPAD 89
>DICTYBASE|DDB_G0282863 [details] [associations]
symbol:snrpG "putative small nuclear
ribonucleoprotein G" species:44689 "Dictyostelium discoideum"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0282863 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 KO:K11099 OMA:VVIMEPK RefSeq:XP_639367.1
ProteinModelPortal:Q54RX0 STRING:Q54RX0 PRIDE:Q54RX0
EnsemblProtists:DDB0233197 GeneID:8623807 KEGG:ddi:DDB_G0282863
eggNOG:NOG244831 Uniprot:Q54RX0
Length = 85
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L L+++++++ N R + G+L+GFD NI L ++ E V T ++ +G+ II
Sbjct: 9 PDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPT----EKYEIGMVII 64
Query: 65 RGDNISIV 72
RG++I ++
Sbjct: 65 RGNSILLM 72
>TAIR|locus:2080777 [details] [associations]
symbol:AT3G11500 "AT3G11500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0005730 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC008153 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O29386 HOGENOM:HOG000223546 KO:K11099
ProtClustDB:CLSN2683015 EMBL:AY062818 EMBL:BT001203 IPI:IPI00542169
RefSeq:NP_187757.1 UniGene:At.27222 ProteinModelPortal:Q9CAX7
SMR:Q9CAX7 STRING:Q9CAX7 PRIDE:Q9CAX7 DNASU:820323
EnsemblPlants:AT3G11500.1 GeneID:820323 KEGG:ath:AT3G11500
TAIR:At3g11500 InParanoid:Q9CAX7 OMA:NIGMVEI PhylomeDB:Q9CAX7
ArrayExpress:Q9CAX7 Genevestigator:Q9CAX7 Uniprot:Q9CAX7
Length = 79
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++++ + N R +VG L+GFDQ N+++D + E G + +G+ +I
Sbjct: 8 PDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE-----VNGDDKTDIGMVVI 62
Query: 65 RGDNISIV 72
RG++I V
Sbjct: 63 RGNSIVTV 70
>WB|WBGene00004915 [details] [associations]
symbol:snr-2 species:6239 "Caenorhabditis elegans"
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0002119 GO:GO:0000003 GO:GO:0003723 GO:GO:0030529
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K11086
HOGENOM:HOG000188899 EMBL:Z92773 PIR:T26289 RefSeq:NP_493348.1
ProteinModelPortal:P91918 SMR:P91918 IntAct:P91918 STRING:P91918
PaxDb:P91918 EnsemblMetazoa:W08E3.1.1 EnsemblMetazoa:W08E3.1.2
GeneID:173204 KEGG:cel:CELE_W08E3.1 UCSC:W08E3.1 CTD:173204
WormBase:W08E3.1 GeneTree:ENSGT00670000098029 InParanoid:P91918
OMA:AECEEHR NextBio:878703 Uniprot:P91918
Length = 160
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 14 QISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTK-----EGVQQLVLGLYIIRGD 67
++ +I DGR +G K FD+ NI+L E E R K +G ++ +LGL ++RG+
Sbjct: 16 RMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLVRGE 75
Query: 68 NI 69
+I
Sbjct: 76 HI 77
>POMBASE|SPAC26A3.08 [details] [associations]
symbol:smb1 "Sm snRNP core protein Smb1" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IC] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=ISO] PomBase:SPAC26A3.08
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
GO:GO:0000395 KO:K11086 HOGENOM:HOG000188899 PIR:T38396
RefSeq:NP_594151.1 ProteinModelPortal:Q10163 IntAct:Q10163
STRING:Q10163 EnsemblFungi:SPAC26A3.08.1 GeneID:2542684
KEGG:spo:SPAC26A3.08 OMA:QEYRHIK OrthoDB:EOG4JMC0B NextBio:20803732
Uniprot:Q10163
Length = 147
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 3 GGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGV-------Q 55
G + SL+ ++V T DGR VG L FD N++L + E + K+ V +
Sbjct: 2 GTTKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEE 61
Query: 56 QLVLGLYIIRGDNI 69
+ +LGL I+RG+ I
Sbjct: 62 KRMLGLVILRGEFI 75
>SGD|S000003783 [details] [associations]
symbol:LSM8 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IDA] [GO:0005688 "U6 snRNP" evidence=IDA;TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0006397 "mRNA
processing" evidence=IEA] SGD:S000003783 INTERPRO:IPR001163
GO:GO:0005737 GO:GO:0005730 EMBL:BK006943 EMBL:X87297 GO:GO:0008033
EMBL:X87611 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0046540 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K12627 OrthoDB:EOG48H0D6
EMBL:Z49522 PIR:S55211 RefSeq:NP_012556.2 ProteinModelPortal:P47093
SMR:P47093 DIP:DIP-903N IntAct:P47093 MINT:MINT-383498
STRING:P47093 PaxDb:P47093 PeptideAtlas:P47093 EnsemblFungi:YJR022W
GeneID:853479 KEGG:sce:YJR022W CYGD:YJR022w eggNOG:NOG258647
HOGENOM:HOG000000816 NextBio:974089 Genevestigator:P47093
GermOnline:YJR022W Uniprot:P47093
Length = 109
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L+ + +++ +I DG ++ L GFD+ TN+ + R+ +KE + ++RG
Sbjct: 5 LKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRI--SKE----FICKAQLLRG 58
Query: 67 DNISIVGEVDEELDSHL 83
I++VG +D E D L
Sbjct: 59 SEIALVGLIDAENDDSL 75
>TAIR|locus:2061446 [details] [associations]
symbol:SNRNP-G "AT2G23930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AC005170 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 EMBL:BT002035 EMBL:BT006498 EMBL:AY088256
IPI:IPI00541782 PIR:E84630 RefSeq:NP_179971.1 UniGene:At.27766
ProteinModelPortal:O82221 SMR:O82221 STRING:O82221 PRIDE:O82221
EnsemblPlants:AT2G23930.1 GeneID:816925 KEGG:ath:AT2G23930
GeneFarm:4625 TAIR:At2g23930 HOGENOM:HOG000223546 InParanoid:O82221
KO:K11099 OMA:DLFLNVV PhylomeDB:O82221 ProtClustDB:CLSN2683015
Genevestigator:O82221 GermOnline:AT2G23930 Uniprot:O82221
Length = 80
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++++ + N R + G L+GFDQ N+++D + E G + +G+ +I
Sbjct: 8 PDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVI 62
Query: 65 RGDNISIV 72
RG++I V
Sbjct: 63 RGNSIVTV 70
>DICTYBASE|DDB_G0302414 [details] [associations]
symbol:snrpE "small nuclear ribonucleoprotein E"
species:44689 "Dictyostelium discoideum" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] [GO:0005685 "U1 snRNP" evidence=ISS] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR027078
dictyBase:DDB_G0302414 INTERPRO:IPR001163 GenomeReviews:CM000154_GR
GO:GO:0003676 EMBL:AAFI02000109 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 GO:GO:0005685 KO:K11097 PANTHER:PTHR11193 OMA:VQIWLYE
RefSeq:XP_002649120.1 EnsemblProtists:DDB0302415 GeneID:8626537
KEGG:ddi:DDB_G0302414 Uniprot:C7G054
Length = 92
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L E QI + N I GV+ G D+ N++LD + E S K+ ++ LG +++G
Sbjct: 21 LTQKTEVQIMLFENTDIRIQGVIIGLDEYMNLVLDNASE--LSIKKKTKK-PLGQILLKG 77
Query: 67 DNISIVGE 74
DNIS+V E
Sbjct: 78 DNISLVLE 85
>GENEDB_PFALCIPARUM|PF14_0146 [details] [associations]
symbol:PF14_0146 "ribonucleoprotein, putative"
species:5833 "Plasmodium falciparum" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:P14678 KO:K11086 HOGENOM:HOG000188899
RefSeq:XP_001348319.1 ProteinModelPortal:Q8ILU8
EnsemblProtists:PF14_0146:mRNA GeneID:811727 KEGG:pfa:PF14_0146
EuPathDB:PlasmoDB:PF3D7_1414800 ProtClustDB:CLSZ2431968
Uniprot:Q8ILU8
Length = 201
Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
Identities = 22/67 (32%), Positives = 42/67 (62%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHE--RVYSTKEGVQQL--VLGLY 62
LE+ ++ ++ V +D R VG +D+ NI+L ++ E +V S + ++++ V+GL
Sbjct: 7 LETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIKRVVGLI 66
Query: 63 IIRGDNI 69
+IRG+NI
Sbjct: 67 LIRGENI 73
>UNIPROTKB|Q8ILU8 [details] [associations]
symbol:PF14_0146 "Ribonucleoprotein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0005681 GO:GO:0003676
EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:P14678 KO:K11086
HOGENOM:HOG000188899 RefSeq:XP_001348319.1
ProteinModelPortal:Q8ILU8 EnsemblProtists:PF14_0146:mRNA
GeneID:811727 KEGG:pfa:PF14_0146 EuPathDB:PlasmoDB:PF3D7_1414800
ProtClustDB:CLSZ2431968 Uniprot:Q8ILU8
Length = 201
Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
Identities = 22/67 (32%), Positives = 42/67 (62%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHE--RVYSTKEGVQQL--VLGLY 62
LE+ ++ ++ V +D R VG +D+ NI+L ++ E +V S + ++++ V+GL
Sbjct: 7 LETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIKRVVGLI 66
Query: 63 IIRGDNI 69
+IRG+NI
Sbjct: 67 LIRGENI 73
>FB|FBgn0261790 [details] [associations]
symbol:SmE "Small ribonucleoprotein particle protein SmE"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR027078 INTERPRO:IPR001163 EMBL:AE014134 GO:GO:0003723
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:BT003597
RefSeq:NP_609162.1 UniGene:Dm.33848 ProteinModelPortal:Q9VLV5
SMR:Q9VLV5 DIP:DIP-18284N IntAct:Q9VLV5 MINT:MINT-342402
STRING:Q9VLV5 PaxDb:Q9VLV5 PRIDE:Q9VLV5 EnsemblMetazoa:FBtr0079560
GeneID:34080 KEGG:dme:Dmel_CG18591 UCSC:CG18591-RA CTD:34080
FlyBase:FBgn0261790 InParanoid:Q9VLV5 OrthoDB:EOG4R7STC
PhylomeDB:Q9VLV5 GenomeRNAi:34080 NextBio:786757 Bgee:Q9VLV5
GermOnline:CG18591 Uniprot:Q9VLV5
Length = 94
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L++ Q+ + N I G + GFD+ N++LD++ E T+ Q+ LG +++G
Sbjct: 24 LQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTR---QRRNLGRIMLKG 80
Query: 67 DNISIVGEVDEELD 80
DNI+++ V D
Sbjct: 81 DNITLIQNVSPTKD 94
>GENEDB_PFALCIPARUM|MAL13P1.253 [details] [associations]
symbol:MAL13P1.253 "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0006396
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844509 GO:GO:0005732
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE
RefSeq:XP_001350215.1 ProteinModelPortal:Q8IDJ7
EnsemblProtists:MAL13P1.253:mRNA GeneID:813814 KEGG:pfa:MAL13P1.253
EuPathDB:PlasmoDB:PF3D7_1350200 ProtClustDB:PTZ00138 Uniprot:Q8IDJ7
Length = 93
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 14 QISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVG 73
QI + I G++ GFD+ N++LD++ E S K+ ++ LG +++GD I+++
Sbjct: 30 QIWLYDKPDMRIEGIILGFDEYMNMVLDQTKE--ISVKKNTKK-ELGKILLKGDTITLIM 86
Query: 74 EVDEE 78
EV E
Sbjct: 87 EVKNE 91
>UNIPROTKB|Q8IDJ7 [details] [associations]
symbol:MAL13P1.253 "Small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0006396 "RNA processing" evidence=ISS] InterPro:IPR027078
INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0006396 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AL844509 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K11097 PANTHER:PTHR11193
HOGENOM:HOG000223543 OMA:VQIWLYE RefSeq:XP_001350215.1
ProteinModelPortal:Q8IDJ7 EnsemblProtists:MAL13P1.253:mRNA
GeneID:813814 KEGG:pfa:MAL13P1.253 EuPathDB:PlasmoDB:PF3D7_1350200
ProtClustDB:PTZ00138 Uniprot:Q8IDJ7
Length = 93
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 14 QISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVG 73
QI + I G++ GFD+ N++LD++ E S K+ ++ LG +++GD I+++
Sbjct: 30 QIWLYDKPDMRIEGIILGFDEYMNMVLDQTKE--ISVKKNTKK-ELGKILLKGDTITLIM 86
Query: 74 EVDEE 78
EV E
Sbjct: 87 EVKNE 91
>SGD|S000002965 [details] [associations]
symbol:SMX2 "Core Sm protein Sm G" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IDA] SGD:S000002965 INTERPRO:IPR001163 EMBL:D50617
EMBL:BK006940 GO:GO:0005682 GO:GO:0003723 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z46255 GO:GO:0046540
GO:GO:0071004 EMBL:M20880 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GO:GO:0005685 HOGENOM:HOG000223546
KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
OrthoDB:EOG4XWK7N EMBL:L31794 EMBL:AY558463 PIR:S48322
RefSeq:NP_116636.1 ProteinModelPortal:P40204 SMR:P40204
DIP:DIP-6683N IntAct:P40204 MINT:MINT-613464 STRING:P40204
PaxDb:P40204 EnsemblFungi:YFL017W-A GeneID:850528
KEGG:sce:YFL017W-A CYGD:YFL017w-a NextBio:966271
Genevestigator:P40204 GermOnline:YFL017W-A Uniprot:P40204
Length = 77
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 22/77 (28%), Positives = 44/77 (57%)
Query: 1 MSGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
M P L+ ++++I + N R + G+L+G+D N++LD++ E + ++ LG
Sbjct: 1 MVSTPELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAME--INGEDPANNHQLG 58
Query: 61 LY-IIRGDNISIVGEVD 76
L +IRG++I + +D
Sbjct: 59 LQTVIRGNSIISLEALD 75
>TAIR|locus:2156589 [details] [associations]
symbol:SAD1 "SUPERSENSITIVE TO ABA AND DROUGHT 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0009737 EMBL:CP002688 GO:GO:0009414
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AB012242
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K12624 OMA:CIGSRIW
UniGene:At.49146 UniGene:At.6838 HSSP:O29885 EMBL:AY034896
EMBL:BT025700 IPI:IPI00538376 RefSeq:NP_199698.1
ProteinModelPortal:Q9FKB0 SMR:Q9FKB0 STRING:Q9FKB0 PRIDE:Q9FKB0
EnsemblPlants:AT5G48870.1 GeneID:834945 KEGG:ath:AT5G48870
TAIR:At5g48870 InParanoid:Q9FKB0 PhylomeDB:Q9FKB0
ProtClustDB:CLSN2686781 Genevestigator:Q9FKB0 Uniprot:Q9FKB0
Length = 88
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYS-TKEGVQQLVLGLYIIR 65
++ + +I VI + +VG+LKGFD N++L++ E Y T EG + L ++
Sbjct: 14 IDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTE--YEITAEGRRVTKLDQILLN 71
Query: 66 GDNISIV 72
G+NI+I+
Sbjct: 72 GNNIAIL 78
>UNIPROTKB|G4MSI0 [details] [associations]
symbol:MGG_01450 "Sm snRNP core protein Sme1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR027078
INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K11097
PANTHER:PTHR11193 RefSeq:XP_003714403.1 ProteinModelPortal:G4MSI0
EnsemblFungi:MGG_01450T0 GeneID:2679702 KEGG:mgr:MGG_01450
Uniprot:G4MSI0
Length = 95
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 22 GRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQL--VLGLYIIRGDNISIV 72
G I G ++GFD+ N+++D++ E TK+ ++ LG +++GDN+S++
Sbjct: 39 GIRIEGKIRGFDEFMNLVIDDAIEVKQITKDNTEEKRRPLGQILLKGDNVSLI 91
>ZFIN|ZDB-GENE-030131-8284 [details] [associations]
symbol:lsm7 "LSM7 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-030131-8284 EMBL:BX908398 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG276686 KO:K12626 InterPro:IPR017132 PIRSF:PIRSF037188
CTD:51690 HOVERGEN:HBG000513 OrthoDB:EOG4GB77F
GeneTree:ENSGT00510000047872 EMBL:BC133957 IPI:IPI00610946
RefSeq:NP_001041471.1 UniGene:Dr.10033 STRING:A4FVI7
Ensembl:ENSDART00000081188 GeneID:573047 KEGG:dre:573047
InParanoid:A4FVI7 NextBio:20891033 Uniprot:A4FVI7
Length = 103
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERV------YSTKEGVQQLVLG 60
L +++ I V GR GVLKGFD N++LD + E + Y E +QL G
Sbjct: 15 LSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQL--G 72
Query: 61 LYIIRGDNISIV 72
L + RG ++ ++
Sbjct: 73 LVVCRGTSVVLI 84
>ASPGD|ASPL0000007577 [details] [associations]
symbol:AN6735 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0003676
EMBL:BN001301 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
HOGENOM:HOG000223543 OMA:VQIWLYE EnsemblFungi:CADANIAT00007528
Uniprot:C8V1X5
Length = 94
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 25 IVGVLKGFDQATNIILDESHERVYSTK-EGVQQLVLGLYIIRGDNISIVGEV 75
I G ++GFD+ N+++D++ E +TK E ++ LG +++GDN+S++ V
Sbjct: 42 IEGKIRGFDEFMNLVIDDAVEVRLATKSEEEKRRPLGQILLKGDNVSLIQAV 93
>TAIR|locus:2053989 [details] [associations]
symbol:AT2G18740 "AT2G18740" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003676 GO:GO:0030529
EMBL:AC005724 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:O26745 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:PPINCIY
ProtClustDB:CLSN2683057 EMBL:AY086369 EMBL:BT005662 EMBL:AK118809
IPI:IPI00523358 PIR:A84568 RefSeq:NP_179464.1 UniGene:At.39949
ProteinModelPortal:Q9ZV45 SMR:Q9ZV45 IntAct:Q9ZV45 STRING:Q9ZV45
PRIDE:Q9ZV45 EnsemblPlants:AT2G18740.1 GeneID:816389
KEGG:ath:AT2G18740 TAIR:At2g18740 InParanoid:Q9ZV45
PhylomeDB:Q9ZV45 ArrayExpress:Q9ZV45 Genevestigator:Q9ZV45
Uniprot:Q9ZV45
Length = 88
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L+S QI + I G + GFD+ N++LDE+ E S K+ ++ LG +++G
Sbjct: 21 LQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEE--VSIKKNTRK-PLGRILLKG 77
Query: 67 DNISIV 72
DNI+++
Sbjct: 78 DNITLM 83
>GENEDB_PFALCIPARUM|PFL0460w [details] [associations]
symbol:PFL0460w "u6 snRNA-associated Sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005634
"nucleus" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] INTERPRO:IPR001163 GO:GO:0005681
EMBL:AE014188 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 RefSeq:XP_001350501.1 HSSP:O29885
ProteinModelPortal:Q8I5V6 PRIDE:Q8I5V6
EnsemblProtists:PFL0460w:mRNA GeneID:811145 KEGG:pfa:PFL0460w
EuPathDB:PlasmoDB:PF3D7_1209200 ProtClustDB:CLSZ2431821
Uniprot:Q8I5V6
Length = 108
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 19/74 (25%), Positives = 40/74 (54%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGV----QQLVLGLY 62
++ + Q+I V + GR +VG L G D N++LD++ E + + + +GL
Sbjct: 21 IKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDPNDSFVVTDKTRSIGLI 80
Query: 63 IIRGDNISIVGEVD 76
+ RG +++++ V+
Sbjct: 81 VARGTSVALITPVE 94
>UNIPROTKB|Q9UK45 [details] [associations]
symbol:LSM7 "U6 snRNA-associated Sm-like protein LSm7"
species:9606 "Homo sapiens" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AF182293 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
GO:GO:0030529 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 EMBL:AC005258 EMBL:BC018621
IPI:IPI00007163 RefSeq:NP_057283.1 UniGene:Hs.512610
ProteinModelPortal:Q9UK45 SMR:Q9UK45 DIP:DIP-31129N IntAct:Q9UK45
MINT:MINT-1036641 STRING:Q9UK45 PhosphoSite:Q9UK45 DMDM:10720075
PaxDb:Q9UK45 PRIDE:Q9UK45 DNASU:51690 Ensembl:ENST00000252622
GeneID:51690 KEGG:hsa:51690 UCSC:uc002lvp.4 CTD:51690
GeneCards:GC19M002321 HGNC:HGNC:20470 HPA:HPA041850 MIM:607287
neXtProt:NX_Q9UK45 PharmGKB:PA134888612 HOGENOM:HOG000223548
HOVERGEN:HBG000513 OrthoDB:EOG4GB77F GenomeRNAi:51690 NextBio:55694
Bgee:Q9UK45 CleanEx:HS_LSM7 Genevestigator:Q9UK45
GermOnline:ENSG00000130332 Uniprot:Q9UK45
Length = 103
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERV------YSTKEGVQQLVLG 60
L +++ I V GR G+LKGFD N++LD + E + Y E +QL G
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQL--G 72
Query: 61 LYIIRGDNISIV 72
L + RG ++ ++
Sbjct: 73 LVVCRGTSVVLI 84
>UNIPROTKB|Q8I5V6 [details] [associations]
symbol:PFL0460w "Lsm7 homologue, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=ISS]
INTERPRO:IPR001163 GO:GO:0005681 EMBL:AE014188 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 HOGENOM:HOG000223548
RefSeq:XP_001350501.1 HSSP:O29885 ProteinModelPortal:Q8I5V6
PRIDE:Q8I5V6 EnsemblProtists:PFL0460w:mRNA GeneID:811145
KEGG:pfa:PFL0460w EuPathDB:PlasmoDB:PF3D7_1209200
ProtClustDB:CLSZ2431821 Uniprot:Q8I5V6
Length = 108
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 19/74 (25%), Positives = 40/74 (54%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGV----QQLVLGLY 62
++ + Q+I V + GR +VG L G D N++LD++ E + + + +GL
Sbjct: 21 IKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDPNDSFVVTDKTRSIGLI 80
Query: 63 IIRGDNISIVGEVD 76
+ RG +++++ V+
Sbjct: 81 VARGTSVALITPVE 94
>SGD|S000005685 [details] [associations]
symbol:SME1 "Core Sm protein Sm E" species:4932
"Saccharomyces cerevisiae" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;IPI] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] InterPro:IPR027078
SGD:S000005685 INTERPRO:IPR001163 GO:GO:0005737 EMBL:BK006948
GO:GO:0005682 GO:GO:0003723 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0071004 EMBL:U55020
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GO:GO:0005685 RefSeq:NP_014804.3 GeneID:854332 KEGG:sce:YOR161C
RefSeq:NP_014802.3 GeneID:854330 KEGG:sce:YOR159C KO:K11097
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 HOGENOM:HOG000223543
OMA:VQIWLYE OrthoDB:EOG49GPSD EMBL:X92449 EMBL:Z75067 EMBL:AY558029
PIR:S67047 ProteinModelPortal:Q12330 SMR:Q12330 DIP:DIP-1633N
IntAct:Q12330 MINT:MINT-396862 STRING:Q12330 PaxDb:Q12330
EnsemblFungi:YOR159C CYGD:YOR159c NextBio:976384
Genevestigator:Q12330 GermOnline:YOR159C Uniprot:Q12330
Length = 94
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 22 GRNIVGVLKGFDQATNIILDESHE-RVYST--KEGVQQ-LVLGLYIIRGDNISIVGEVD 76
G I G + GFD+ N+++DE+ E V S KE V++ LG +++GDNI+++ D
Sbjct: 36 GIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
>TAIR|locus:2118781 [details] [associations]
symbol:AT4G30330 "AT4G30330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=RCA] [GO:0016925 "protein sumoylation" evidence=RCA]
InterPro:IPR027078 INTERPRO:IPR001163 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O26745 eggNOG:COG1958 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE EMBL:AY087756
EMBL:BT024534 EMBL:AK175112 EMBL:AK175313 EMBL:AK176788
IPI:IPI00542865 RefSeq:NP_567844.1 UniGene:At.31841
ProteinModelPortal:Q8LAK5 SMR:Q8LAK5 IntAct:Q8LAK5 STRING:Q8LAK5
PaxDb:Q8LAK5 PRIDE:Q8LAK5 EnsemblPlants:AT4G30330.1 GeneID:829156
KEGG:ath:AT4G30330 TAIR:At4g30330 InParanoid:Q8LAK5
PhylomeDB:Q8LAK5 ProtClustDB:CLSN2683057 Genevestigator:Q8LAK5
Uniprot:Q8LAK5
Length = 88
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L+S QI + I G + GFD+ N++LDE+ E S K+ ++ LG +++G
Sbjct: 21 LQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEE--VSIKKKTRK-PLGRILLKG 77
Query: 67 DNISIV 72
DNI+++
Sbjct: 78 DNITLM 83
>FB|FBgn0261068 [details] [associations]
symbol:LSm7 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
INTERPRO:IPR001163 EMBL:AE014134 GO:GO:0022008 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
CTD:51690 GeneTree:ENSGT00510000047872 HSSP:O29885 EMBL:AY113637
RefSeq:NP_001246045.1 RefSeq:NP_609807.1 UniGene:Dm.19844
SMR:Q9VJI7 IntAct:Q9VJI7 MINT:MINT-827616 STRING:Q9VJI7
EnsemblMetazoa:FBtr0080934 EnsemblMetazoa:FBtr0308804 GeneID:35003
KEGG:dme:Dmel_CG13277 UCSC:CG13277-RA FlyBase:FBgn0261068
InParanoid:Q9VJI7 OrthoDB:EOG41G1MQ GenomeRNAi:35003 NextBio:791341
Uniprot:Q9VJI7
Length = 110
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGV-----QQLVLGL 61
L +E+QI V GR G+LKG+D N++LD + E + + E Q LGL
Sbjct: 24 LSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLGL 83
Query: 62 YIIRGDNISIV 72
+ RG + ++
Sbjct: 84 VVCRGTALVLI 94
>UNIPROTKB|E1C962 [details] [associations]
symbol:E1C962 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071044 "histone mRNA catabolic
process" evidence=IEA] GO:GO:0005634 GO:GO:0005737 GO:GO:0071044
GeneTree:ENSGT00570000079167 EMBL:AADN02054859 EMBL:AADN02054860
IPI:IPI00588760 Ensembl:ENSGALT00000005131 OMA:QDIDSEC
Uniprot:E1C962
Length = 133
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 16/53 (30%), Positives = 35/53 (66%)
Query: 29 LKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDEELDS 81
L F + N++L ++ ER++ K+ + G++++RG+N+ ++GE+D E +S
Sbjct: 32 LSFFFLSANLVLHQTVERIHVGKK-YGDIPRGIFVVRGENVVLLGEIDLEKES 83
>SGD|S000006434 [details] [associations]
symbol:LSM3 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IDA;TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS;IPI] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=NAS;IDA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=TAS] SGD:S000006434 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0008033
GO:GO:0000956 GO:GO:0000398 EMBL:U21094 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 RefSeq:NP_013543.3
GeneID:851159 KEGG:sce:YLR438C-A KO:K12622 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG236203 GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
OMA:MVFVRGD OrthoDB:EOG4JQ77D EMBL:Z30582 EMBL:X06790 PIR:S78568
RefSeq:NP_013545.3 PDB:3BW1 PDBsum:3BW1 ProteinModelPortal:P57743
SMR:P57743 DIP:DIP-2587N IntAct:P57743 MINT:MINT-422505
STRING:P57743 PaxDb:P57743 PeptideAtlas:P57743
EnsemblFungi:YLR438C-A GeneID:851161 KEGG:sce:YLR440C
CYGD:YLR438c-a EvolutionaryTrace:P57743 NextBio:967948
Genevestigator:P57743 GermOnline:YLR438C-A Uniprot:P57743
Length = 89
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 18/78 (23%), Positives = 41/78 (52%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYS-TKEGVQQLV--LGLYIIRGD 67
+++++ + R +VG L+ FD NI+L ++ E +Y E + + + IRGD
Sbjct: 12 LDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGD 71
Query: 68 NISIVGEVDEELDSHLDL 85
++++ E+ D +++
Sbjct: 72 TVTLISTPSEDDDGAVEI 89
>UNIPROTKB|J3QLE5 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein N" species:9606 "Homo sapiens" [GO:0005685 "U1 snRNP"
evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HGNC:HGNC:11164 ChiTaRS:SNRPN EMBL:AC124312
EMBL:AC090602 EMBL:AC090983 Ensembl:ENST00000579070 Uniprot:J3QLE5
Length = 169
Score = 87 (35.7 bits), Expect = 0.00068, P = 0.00068
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYII 64
++ ++ I DGR +G K FD+ N+IL + E R K Q + VLGL ++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 65 RGDNI 69
RG+N+
Sbjct: 73 RGENL 77
>FB|FBgn0035675 [details] [associations]
symbol:CG6610 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=NAS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005681 "spliceosomal
complex" evidence=ISS] INTERPRO:IPR001163 EMBL:AE014296
GO:GO:0005681 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 eggNOG:COG1958 GeneTree:ENSGT00390000001455 KO:K12624
OMA:CIGSRIW EMBL:AY113521 RefSeq:NP_648022.1 UniGene:Dm.14483
SMR:Q9VRT7 IntAct:Q9VRT7 MINT:MINT-768745 STRING:Q9VRT7
EnsemblMetazoa:FBtr0077048 EnsemblMetazoa:FBtr0332059
EnsemblMetazoa:FBtr0332060 GeneID:38693 KEGG:dme:Dmel_CG6610
UCSC:CG6610-RA FlyBase:FBgn0035675 InParanoid:Q9VRT7
OrthoDB:EOG43TXC6 GenomeRNAi:38693 NextBio:809911 Uniprot:Q9VRT7
Length = 91
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
++ + +I +I + + +VG L GFD N++LD+ E +T +G + L ++ G
Sbjct: 19 VDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTE-YENTPDGRRITKLDQILLNG 77
Query: 67 DNISIV---GEVDE 77
+NI+++ GE+ E
Sbjct: 78 NNITMLVPGGELAE 91
>UNIPROTKB|F1ME11 [details] [associations]
symbol:LOC100296197 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR027078
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:DAAA02072295
IPI:IPI00905250 Ensembl:ENSBTAT00000057036 Uniprot:F1ME11
Length = 91
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 18/51 (35%), Positives = 34/51 (66%)
Query: 25 IVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEV 75
I G + GFD+ N++LD++ E ++S + +QL G +++GDNI+++ V
Sbjct: 42 IEGCIIGFDEYRNLVLDDAEE-IHSKTKSRKQL--GRIMLKGDNITLIQSV 89
>SGD|S000005091 [details] [associations]
symbol:LSM7 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=NAS;IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IMP] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005688 "U6 snRNP" evidence=IDA] SGD:S000005091
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005730 EMBL:BK006947
GO:GO:0003723 GO:GO:0008033 EMBL:Z46843 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 OrthoDB:EOG4BGD5N
EMBL:Z71423 PIR:S55137 RefSeq:NP_014252.2 ProteinModelPortal:P53905
SMR:P53905 DIP:DIP-1419N IntAct:P53905 MINT:MINT-398907
STRING:P53905 PaxDb:P53905 PeptideAtlas:P53905 EnsemblFungi:YNL147W
GeneID:855575 KEGG:sce:YNL147W CYGD:YNL147w
GeneTree:ENSGT00510000047872 OMA:ENNTELI NextBio:979694
Genevestigator:P53905 GermOnline:YNL147W Uniprot:P53905
Length = 115
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 12 EQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK-EGVQQLV------LGLYII 64
+ +I V G+ ++GVLKG+DQ N++LD++ E + + E +L+ LGL +I
Sbjct: 35 DSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVI 94
Query: 65 RG 66
RG
Sbjct: 95 RG 96
>FB|FBgn0262601 [details] [associations]
symbol:SmB "Small ribonucleoprotein particle protein SmB"
species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0016070 "RNA metabolic process" evidence=NAS]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0045495
"pole plasm" evidence=IDA] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0015030 "Cajal body" evidence=IDA] INTERPRO:IPR001163
GO:GO:0008406 GO:GO:0007052 EMBL:AE014134 GO:GO:0003723
GO:GO:0007281 GO:GO:0015030 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532
GO:GO:0045495 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11086 InterPro:IPR017131 PIRSF:PIRSF037187
GeneTree:ENSGT00670000098029 OMA:KNNKMIQ EMBL:L02919 EMBL:AY061171
PIR:JN0574 RefSeq:NP_001188780.1 RefSeq:NP_476921.1 UniGene:Dm.3699
ProteinModelPortal:Q05856 SMR:Q05856 DIP:DIP-18712N IntAct:Q05856
MINT:MINT-283074 STRING:Q05856 PaxDb:Q05856 PRIDE:Q05856
EnsemblMetazoa:FBtr0304118 GeneID:34426 KEGG:dme:Dmel_CG5352
CTD:34426 FlyBase:FBgn0262601 InParanoid:Q05856 OrthoDB:EOG4F7M2H
PhylomeDB:Q05856 GenomeRNAi:34426 NextBio:788434 Bgee:Q05856
GermOnline:CG5352 Uniprot:Q05856
Length = 199
Score = 88 (36.0 bits), Expect = 0.00083, P = 0.00083
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 14 QISVITNDGRNIVGVLKGFDQATNIILDESHE----RVYSTK--EGVQQLVLGLYIIRGD 67
++ ++ D R +G K FD+ N+IL + E R ++K E ++ VLG ++RG+
Sbjct: 16 RVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGE 75
Query: 68 NI 69
NI
Sbjct: 76 NI 77
>WB|WBGene00004919 [details] [associations]
symbol:snr-6 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0032940
"secretion by cell" evidence=IMP] [GO:0018996 "molting cycle,
collagen and cuticulin-based cuticle" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006997 "nucleus organization" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0032940
GO:GO:0008380 GO:GO:0018996 GO:GO:0006397 GO:GO:0040011
GO:GO:0003723 GO:GO:0007281 EMBL:Z98866 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006997 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 PANTHER:PTHR11193 PIR:T27041 RefSeq:NP_499620.1
UniGene:Cel.9740 ProteinModelPortal:Q9XTU6 SMR:Q9XTU6
DIP:DIP-24866N IntAct:Q9XTU6 MINT:MINT-1060547 STRING:Q9XTU6
PaxDb:Q9XTU6 EnsemblMetazoa:Y49E10.15 GeneID:176668
KEGG:cel:CELE_Y49E10.15 UCSC:Y49E10.15 CTD:176668
WormBase:Y49E10.15 GeneTree:ENSGT00390000012818
HOGENOM:HOG000223543 InParanoid:Q9XTU6 OMA:VQIWLYE NextBio:893536
Uniprot:Q9XTU6
Length = 90
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L++ QI + + + G + GFD+ N++ DE+ E TK G ++ G +++G
Sbjct: 21 LQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTK-GRNKI--GRILLKG 77
Query: 67 DNISIVGEVDEE 78
DNI+++ +E
Sbjct: 78 DNITLIHAAQQE 89
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.138 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 98 98 0.00091 102 3 11 22 0.44 30
29 0.45 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 76
No. of states in DFA: 455 (48 KB)
Total size of DFA: 87 KB (2068 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.51u 0.09s 11.60t Elapsed: 00:00:00
Total cpu time: 11.51u 0.09s 11.60t Elapsed: 00:00:00
Start: Fri May 10 20:23:40 2013 End: Fri May 10 20:23:40 2013