BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034299
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RCP3|NAA38_PONAB N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo
abelii GN=NAA38 PE=3 SV=3
Length = 96
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 77/94 (81%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
LE+ + + ++VIT+DGR IVG LKGFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+
Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIV 62
Query: 65 RGDNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 98
RGDN++++GE+DEE DS LDL N+RA PL V H
Sbjct: 63 RGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>sp|Q6ZWM4|NAA38_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus
musculus GN=Naa38 PE=3 SV=3
Length = 96
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 77/94 (81%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
LE+ + + ++VIT+DGR IVG LKGFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+
Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIV 62
Query: 65 RGDNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 98
RGDN++++GE+DEE DS LDL N+RA PL V H
Sbjct: 63 RGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>sp|O95777|NAA38_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo
sapiens GN=NAA38 PE=1 SV=3
Length = 96
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 77/94 (81%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
LE+ + + ++VIT+DGR IVG LKGFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+
Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIV 62
Query: 65 RGDNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 98
RGDN++++GE+DEE DS LDL N+RA PL V H
Sbjct: 63 RGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>sp|Q3ZCE0|NAA38_BOVIN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Bos
taurus GN=NAA38 PE=3 SV=3
Length = 96
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 77/94 (81%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
LE+ + + ++VIT+DGR IVG LKGFDQ N+ILDESHERV+S+ +GV+Q+VLGLYI+
Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIV 62
Query: 65 RGDNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 98
RGDN++++GE+DEE DS LDL N+RA PL V H
Sbjct: 63 RGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>sp|Q1ZXD5|NAA38_DICDI N-alpha-acetyltransferase 38, NatC auxiliary subunit
OS=Dictyostelium discoideum GN=lsm8 PE=3 SV=1
Length = 94
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 74/92 (80%), Gaps = 1/92 (1%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
LES +++Q+ V+T DGR+I+G L+G DQ N++L++ HERVYS EG++ + LG+++I+G
Sbjct: 4 LESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSD-EGIEVIPLGVHLIKG 62
Query: 67 DNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 98
D+++++GEVD+ELD L+L + A P+KP++H
Sbjct: 63 DDVAVIGEVDDELDKKLNLKEIIAEPMKPIVH 94
>sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm8 PE=3 SV=1
Length = 94
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 67/92 (72%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L +EQ++ VITNDGR ++G LKGFD TN+IL +S ER+ S + ++ + LG+Y++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 67 DNISIVGEVDEELDSHLDLSNLRAHPLKPVIH 98
+N+++VG V+EELDS ++ + +R + V+H
Sbjct: 63 ENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH 94
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1
OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 1 MSGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
MS G G E V++++ V+ DGR +G+++ FDQ NI+L ++ ER+Y + LG
Sbjct: 1 MSSGLGDE--VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIY-VGDCYSDKNLG 57
Query: 61 LYIIRGDNISIVGEVD 76
L+ IRGDN+ I+GE+D
Sbjct: 58 LFFIRGDNVVILGEID 73
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSM1 PE=1 SV=1
Length = 172
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 9 SLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEG-VQQLVLGLYIIRGD 67
S V+++I V+ DGR + GVL+ FDQ N+IL + ER+Y ++E + G+++IRG+
Sbjct: 48 SSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGE 107
Query: 68 NISIVGEVD 76
N+ ++GEVD
Sbjct: 108 NVVMLGEVD 116
>sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1
Length = 140
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L V++++ V+ DG+ ++G+L+ FDQ N++L + ER+Y + + G+YI+RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIY-VDDMYGDIDRGVYIVRG 74
Query: 67 DNISIVGE--VDEELDSHLDLSNLRAHPLKPV 96
+N+ ++GE +D+E D+ L + A L P+
Sbjct: 75 ENVVLLGELDLDKEYDAVKQLRRMPAEELYPL 106
>sp|Q5E9Z8|LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1
PE=2 SV=1
Length = 133
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 1 MSGGPGLESLVE---QQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQL 57
M+ PG SL+E ++ V+ DGR ++G L+ DQ N++L ++ ER++ K+ +
Sbjct: 1 MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDI 59
Query: 58 VLGLYIIRGDNISIVGEVDEELDSHLDLSNL 88
G++++RG+N+ ++GE+D E +S L +
Sbjct: 60 PRGIFVVRGENVVLLGEIDLEKESDTPLQQV 90
>sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1
PE=2 SV=1
Length = 133
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 1 MSGGPGLESLVE---QQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQL 57
M+ PG SL+E ++ V+ DGR ++G L+ DQ N++L ++ ER++ K+ +
Sbjct: 1 MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDI 59
Query: 58 VLGLYIIRGDNISIVGEVDEELDSHLDLSNL 88
G++++RG+N+ ++GE+D E +S L +
Sbjct: 60 PRGIFVVRGENVVLLGEIDLEKESDTPLQQV 90
>sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1
PE=1 SV=1
Length = 133
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 1 MSGGPGLESLVE---QQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQL 57
M+ PG SL+E ++ V+ DGR ++G L+ DQ N++L ++ ER++ K+ +
Sbjct: 1 MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDI 59
Query: 58 VLGLYIIRGDNISIVGEVDEELDSHLDLSNL 88
G++++RG+N+ ++GE+D E +S L +
Sbjct: 60 PRGIFVVRGENVVLLGEIDLEKESDTPLQQV 90
>sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1
SV=1
Length = 76
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++++S+ N GR++ G+L+GFD N+++DE E S QQ +G+ +I
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG----QQNNIGMVVI 62
Query: 65 RGDNI 69
RG++I
Sbjct: 63 RGNSI 67
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1
SV=1
Length = 76
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++++S+ N GR++ G+L+GFD N+++DE E S QQ +G+ +I
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG----QQNNIGMVVI 62
Query: 65 RGDNI 69
RG++I
Sbjct: 63 RGNSI 67
>sp|Q3ZBL0|RUXG_BOVIN Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3
SV=1
Length = 76
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++++S+ N GR++ G+L+GFD N+++DE E S QQ +G+ +I
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG----QQNNIGMVVI 62
Query: 65 RGDNI 69
RG++I
Sbjct: 63 RGNSI 67
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 12 EQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLV-----LGLYIIRG 66
+Q+I GR I G+LKGFDQ N++LD+ E++ + ++G +L LGL ++RG
Sbjct: 33 DQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG--KLTGAIRKLGLVVVRG 90
Query: 67 DNISIVGEVD 76
+ ++ +D
Sbjct: 91 TTLVLIAPMD 100
>sp|A8MWD9|RUXGL_HUMAN Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens
PE=2 SV=2
Length = 76
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++ S+ N GR++ G+L+GFD N+++DE E S QQ +G+ I
Sbjct: 7 PELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG----QQKNIGMVEI 62
Query: 65 RGDNI 69
RG++I
Sbjct: 63 RGNSI 67
>sp|Q54HF6|LSM7_DICDI Probable U6 snRNA-associated Sm-like protein LSm7
OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1
Length = 97
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGV----QQLVLGLY 62
L+ + ++I V GR + G+LKG+DQ NI LD++ E + ++ + ++ LGL
Sbjct: 15 LQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGLV 74
Query: 63 IIRGDNISIV 72
+ RG ++ +V
Sbjct: 75 VCRGSSVMMV 84
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVY-STKEGVQQLVLGLYI 63
P ++ +++++ + N GR + G+L+GFD N++LD++ E +TK + G+ +
Sbjct: 7 PEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNI-----GMVV 61
Query: 64 IRGDNISIVGEVDE 77
IRG++I +V +D
Sbjct: 62 IRGNSIVMVEALDR 75
>sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B
OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1
Length = 160
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 14 QISVITNDGRNIVGVLKGFDQATNIILDESHE------RVYSTKEGVQQLVLGLYIIRGD 67
++ +I DGR +G K FD+ NI+L E E + +G ++ +LGL ++RG+
Sbjct: 16 RMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLVRGE 75
Query: 68 NI 69
+I
Sbjct: 76 HI 77
>sp|P40018|RSMB_YEAST Small nuclear ribonucleoprotein-associated protein B
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SMB1 PE=1 SV=1
Length = 196
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 18/81 (22%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDES-HERVYST-----------KEG- 53
L +L++ ++ V+T DGR +G L FD+ N++L+E ERV T K+G
Sbjct: 12 LANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRPRKDSKDGT 71
Query: 54 -----VQQLVLGLYIIRGDNI 69
V++ VLGL I+RG+ I
Sbjct: 72 TLNIKVEKRVLGLTILRGEQI 92
>sp|Q54RX0|RUXG_DICDI Probable small nuclear ribonucleoprotein G OS=Dictyostelium
discoideum GN=snrpG PE=3 SV=1
Length = 85
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L L+++++++ N R + G+L+GFD NI L ++ E V T ++ +G+ II
Sbjct: 9 PDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPT----EKYEIGMVII 64
Query: 65 RGDNI 69
RG++I
Sbjct: 65 RGNSI 69
>sp|Q10163|RSMB_SCHPO Small nuclear ribonucleoprotein-associated protein B
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smb1 PE=1 SV=1
Length = 147
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 9 SLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGV-------QQLVLGL 61
SL+ ++V T DGR VG L FD N++L + E + K+ V ++ +LGL
Sbjct: 8 SLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGL 67
Query: 62 YIIRGDNI 69
I+RG+ I
Sbjct: 68 VILRGEFI 75
>sp|O74966|RUXG_SCHPO Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smg1 PE=1 SV=1
Length = 77
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 2 SGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGL 61
+G P L+ +++Q+ V N R + GVL+G+D NI+L++S E K +++ +G
Sbjct: 4 AGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEE----KVDGEKVKIGS 59
Query: 62 YIIRGDNISIVGEVDE 77
IRG+++ ++ +D+
Sbjct: 60 VAIRGNSVIMIETLDK 75
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G OS=Caenorhabditis
elegans GN=snr-7 PE=3 SV=1
Length = 77
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++++ + N R + G+L+GFD N+++DE+ E Y G + LG+ +I
Sbjct: 7 PELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVE--YQKDGG--SVNLGMTVI 62
Query: 65 RGDNISIV 72
RG+++ I+
Sbjct: 63 RGNSVVIM 70
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++Q+ + R IVG L+GFDQ N+++D + E G ++ +G+ +I
Sbjct: 8 PALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVE-----VNGNEKNDIGMVVI 62
Query: 65 RGDNISIV 72
RG+++ V
Sbjct: 63 RGNSVVTV 70
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis
thaliana GN=At2g23930 PE=2 SV=1
Length = 80
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
P L+ +++++ + N R + G L+GFDQ N+++D + E G + +G+ +I
Sbjct: 8 PDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVI 62
Query: 65 RGDNISIV 72
RG++I V
Sbjct: 63 RGNSIVTV 70
>sp|P47093|LSM8_YEAST U6 snRNA-associated Sm-like protein LSm8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM8 PE=1
SV=2
Length = 109
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L+ + +++ +I DG ++ L GFD+ TN+ + R+ ++ + ++RG
Sbjct: 5 LKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRIS------KEFICKAQLLRG 58
Query: 67 DNISIVGEVDEELDSHL 83
I++VG +D E D L
Sbjct: 59 SEIALVGLIDAENDDSL 75
>sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein-associated protein N OS=Rattus
norvegicus GN=Snrpn PE=2 SV=1
Length = 240
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYII 64
++ ++ I DGR +G K FD+ N+IL + E R K Q + VLGL ++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 65 RGDNI 69
RG+N+
Sbjct: 73 RGENL 77
>sp|Q5R6I0|RSMN_PONAB Small nuclear ribonucleoprotein-associated protein N OS=Pongo
abelii GN=SNRPN PE=2 SV=1
Length = 240
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYII 64
++ ++ I DGR +G K FD+ N+IL + E R K Q + VLGL ++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 65 RGDNI 69
RG+N+
Sbjct: 73 RGENL 77
>sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N OS=Mus
musculus GN=Snrpn PE=2 SV=1
Length = 240
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYII 64
++ ++ I DGR +G K FD+ N+IL + E R K Q + VLGL ++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 65 RGDNI 69
RG+N+
Sbjct: 73 RGENL 77
>sp|Q60HD3|RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N OS=Macaca
fascicularis GN=SNRPN PE=2 SV=1
Length = 240
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYII 64
++ ++ I DGR +G K FD+ N+IL + E R K Q + VLGL ++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 65 RGDNI 69
RG+N+
Sbjct: 73 RGENL 77
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N OS=Homo
sapiens GN=SNRPN PE=1 SV=1
Length = 240
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYII 64
++ ++ I DGR +G K FD+ N+IL + E R K Q + VLGL ++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 65 RGDNI 69
RG+N+
Sbjct: 73 RGENL 77
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' OS=Gallus
gallus GN=SNRPB PE=2 SV=1
Length = 240
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYII 64
++ ++ I DGR +G K FD+ N+IL + E R K Q + VLGL ++
Sbjct: 13 IDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLL 72
Query: 65 RGDNI 69
RG+N+
Sbjct: 73 RGENL 77
>sp|Q17QN3|RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N OS=Bos
taurus GN=SNRPN PE=2 SV=1
Length = 240
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYII 64
++ ++ I DGR +G K FD+ N+IL + E R K Q + VLGL ++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 65 RGDNI 69
RG+N+
Sbjct: 73 RGENL 77
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B'
OS=Monodelphis domestica GN=SNRPB PE=2 SV=1
Length = 240
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYII 64
++ ++ I DGR +G K FD+ N+IL + E R K Q + VLGL ++
Sbjct: 13 IDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 65 RGDNI 69
RG+N+
Sbjct: 73 RGENL 77
>sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus
musculus GN=Snrpb PE=1 SV=1
Length = 231
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYII 64
++ ++ I DGR +G K FD+ N+IL + E R K Q + VLGL ++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 65 RGDNI 69
RG+N+
Sbjct: 73 RGENL 77
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B'
OS=Homo sapiens GN=SNRPB PE=1 SV=2
Length = 240
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYII 64
++ ++ I DGR +G K FD+ N+IL + E R K Q + VLGL ++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 65 RGDNI 69
RG+N+
Sbjct: 73 RGENL 77
>sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B'
OS=Erinaceus europaeus GN=SNRPB PE=2 SV=1
Length = 240
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYII 64
++ ++ I DGR +G K FD+ N+IL + E R K Q + VLGL ++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 65 RGDNI 69
RG+N+
Sbjct: 73 RGENL 77
>sp|Q58DW4|RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' OS=Bos
taurus GN=SNRPB PE=2 SV=1
Length = 240
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYII 64
++ ++ I DGR +G K FD+ N+IL + E R K Q + VLGL ++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 65 RGDNI 69
RG+N+
Sbjct: 73 RGENL 77
>sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B' OS=Macropus
eugenii GN=SNRPB PE=2 SV=1
Length = 240
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYII 64
++ ++ I DGR +G K FD+ N+IL + E R K Q + VLGL ++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 65 RGDNI 69
RG+N+
Sbjct: 73 RGENL 77
>sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7
PE=3 SV=1
Length = 103
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERV------YSTKEGVQQLVLG 60
L +++ I V GR G+LKGFD N++LD + E + Y E +Q LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQ--LG 72
Query: 61 LYIIRGDNISIVGEVD 76
L + RG ++ ++ D
Sbjct: 73 LVVCRGTSVVLICPQD 88
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B
OS=Drosophila melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 14 QISVITNDGRNIVGVLKGFDQATNIILDESHE----RVYSTK--EGVQQLVLGLYIIRGD 67
++ ++ D R +G K FD+ N+IL + E R ++K E ++ VLG ++RG+
Sbjct: 16 RVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGE 75
Query: 68 NI 69
NI
Sbjct: 76 NI 77
>sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7
PE=1 SV=1
Length = 103
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERV------YSTKEGVQQLVLG 60
L +++ I V GR G+LKGFD N++LD + E + Y E +Q LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQ--LG 72
Query: 61 LYIIRGDNISIVGEVD 76
L + RG ++ ++ D
Sbjct: 73 LVVCRGTSVVLICPQD 88
>sp|Q9VLV5|RUXE_DROME Probable small nuclear ribonucleoprotein E OS=Drosophila
melanogaster GN=SmE PE=3 SV=1
Length = 94
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 14 QISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVG 73
Q+ + N I G + GFD+ N++LD++ E T+ Q+ LG +++GDNI+++
Sbjct: 31 QVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTR---QRRNLGRIMLKGDNITLIQ 87
Query: 74 EVDEELD 80
V D
Sbjct: 88 NVSPTKD 94
>sp|Q8SQH7|LSMH_ENCCU Probable U6 snRNA-associated Sm-like protein OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU07_1830 PE=3 SV=1
Length = 70
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
L+ +++++ V T G G L+GFD+ N++L S+ EG + VL +RG
Sbjct: 8 LKMYLKERVEVKTKSGEAYTGTLEGFDEHINLML------TCSSVEGSEDKVL---FLRG 58
Query: 67 DNISIVG 73
+NI VG
Sbjct: 59 ENILFVG 65
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 13/76 (17%)
Query: 4 GPGLESLVE------QQISVITNDGRNIVGVLKGFDQATNIILDESHERVYST-KEGVQQ 56
GP E++++ +I V G+ ++GVLKG+DQ N++LD++ E + + E +
Sbjct: 21 GPKREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTE 80
Query: 57 LV------LGLYIIRG 66
L+ LGL +IRG
Sbjct: 81 LISKNARKLGLTVIRG 96
>sp|A2BIG9|LSMD1_DANRE LSM domain-containing protein 1 OS=Danio rerio GN=lsmd1 PE=2 SV=1
Length = 109
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 7 LESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQ--QLVLGLYII 64
LE+L+ + + + DGR +VG+ D+ N+IL + E + ST Q VLGL +I
Sbjct: 28 LENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKSTDSLSQGEPRVLGLAMI 87
Query: 65 RGDNI 69
G ++
Sbjct: 88 PGHHV 92
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMX2 PE=1 SV=1
Length = 77
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 1 MSGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
M P L+ ++++I + N R + G+L+G+D N++LD++ E + ++ LG
Sbjct: 1 MVSTPELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAME--INGEDPANNHQLG 58
Query: 61 L-YIIRGDNI 69
L +IRG++I
Sbjct: 59 LQTVIRGNSI 68
>sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein-associated protein B (Fragment)
OS=Rattus norvegicus GN=Snrpb PE=2 SV=1
Length = 214
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 20 NDGRNIVGVLKGFDQATNIILDESHE-RVYSTKEGVQ-----QLVLGLYIIRGDNI 69
+GR +G K FD+ N+IL + E R K Q + VLGL ++RG+N+
Sbjct: 5 QNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 60
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.138 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,033,690
Number of Sequences: 539616
Number of extensions: 1502809
Number of successful extensions: 4056
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 3940
Number of HSP's gapped (non-prelim): 128
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)