Query 034299
Match_columns 98
No_of_seqs 103 out of 1021
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 20:36:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bw1_A SMX4 protein, U6 snRNA- 99.9 6.8E-26 2.3E-30 146.0 10.4 82 3-84 11-95 (96)
2 1h64_1 SnRNP SM-like protein; 99.9 1.5E-24 5.1E-29 133.6 10.0 72 2-77 4-75 (75)
3 1ljo_A Archaeal SM-like protei 99.9 3.2E-24 1.1E-28 132.8 10.3 73 1-77 4-77 (77)
4 1d3b_B Protein (small nuclear 99.9 1.9E-24 6.6E-29 137.4 9.1 77 2-78 4-86 (91)
5 4emk_C U6 snRNA-associated SM- 99.9 3.6E-24 1.2E-28 141.8 9.8 77 4-80 25-104 (113)
6 1i4k_A Putative snRNP SM-like 99.9 8E-24 2.7E-28 130.8 10.4 72 2-77 4-75 (77)
7 3s6n_F Small nuclear ribonucle 99.9 1.4E-23 4.7E-28 132.8 9.7 76 2-81 6-81 (86)
8 4emk_A U6 snRNA-associated SM- 99.9 4E-23 1.4E-27 132.8 10.8 73 2-77 20-92 (94)
9 4emk_B U6 snRNA-associated SM- 99.9 1.1E-23 3.9E-28 129.9 7.6 71 2-76 4-74 (75)
10 3s6n_G Small nuclear ribonucle 99.9 1.1E-23 3.6E-28 130.4 7.4 71 3-77 5-75 (76)
11 1th7_A SnRNP-2, small nuclear 99.9 3E-23 1E-27 129.5 9.4 71 3-77 10-80 (81)
12 1i8f_A Putative snRNP SM-like 99.9 3.9E-23 1.3E-27 129.1 9.1 70 2-76 11-80 (81)
13 1mgq_A SM-like protein; LSM, R 99.9 9.4E-23 3.2E-27 128.0 10.6 70 1-74 14-83 (83)
14 4emg_A Probable U6 snRNA-assoc 99.9 9.1E-23 3.1E-27 130.7 10.2 74 2-75 9-91 (93)
15 4emh_A Probable U6 snRNA-assoc 99.9 4.9E-23 1.7E-27 134.8 8.9 80 1-83 15-94 (105)
16 1n9r_A SMF, small nuclear ribo 99.9 7.4E-23 2.5E-27 131.3 9.0 72 1-76 20-92 (93)
17 2fwk_A U6 snRNA-associated SM- 99.9 2E-23 6.9E-28 139.3 6.0 82 1-82 27-119 (121)
18 1d3b_A Protein (small nuclear 99.9 2E-22 6.7E-27 124.5 9.8 72 1-76 4-75 (75)
19 3s6n_E Small nuclear ribonucle 99.9 1.7E-22 5.9E-27 129.4 6.9 72 2-76 16-91 (92)
20 3pgw_B SM B; protein-RNA compl 99.9 7.3E-22 2.5E-26 143.9 10.5 76 2-77 4-85 (231)
21 1b34_A Protein (small nuclear 99.9 7.4E-22 2.5E-26 131.5 9.1 73 1-77 1-73 (119)
22 1b34_B Protein (small nuclear 99.9 1.1E-21 3.7E-26 130.4 8.8 76 2-77 27-114 (118)
23 2y9a_D Small nuclear ribonucle 99.8 3.6E-20 1.2E-24 124.6 9.7 75 1-79 4-78 (126)
24 1m5q_A SMAP3, small nuclear ri 99.8 7.8E-20 2.7E-24 123.5 7.3 69 5-81 3-71 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 99.1 1.6E-10 5.3E-15 73.0 6.2 67 5-81 10-77 (86)
26 2ylb_A Protein HFQ; RNA-bindin 96.9 0.0022 7.5E-08 39.0 5.1 54 6-76 13-68 (74)
27 1u1s_A HFQ protein; SM-like ba 96.7 0.0035 1.2E-07 38.9 5.1 36 6-42 11-48 (82)
28 2fb7_A SM-like protein, LSM-14 96.5 0.0097 3.3E-07 37.8 6.2 75 4-78 11-91 (95)
29 2y90_A Protein HFQ; RNA-bindin 96.4 0.0039 1.3E-07 40.2 4.3 36 6-42 13-50 (104)
30 2vxe_A CG10686-PA; EDC3, CAR-1 96.4 0.025 8.4E-07 35.4 7.8 70 8-77 9-84 (88)
31 3sb2_A Protein HFQ; SM-like, R 96.3 0.0069 2.4E-07 37.2 4.7 54 6-76 12-67 (79)
32 1kq1_A HFQ, HOST factor for Q 96.2 0.012 4.2E-07 35.9 5.3 35 6-41 11-47 (77)
33 4a53_A EDC3; RNA binding prote 96.2 0.0092 3.1E-07 39.5 5.0 58 6-78 6-65 (125)
34 3ahu_A Protein HFQ; SM-like mo 96.1 0.012 4E-07 36.1 5.0 35 6-41 15-51 (78)
35 2qtx_A Uncharacterized protein 95.9 0.016 5.5E-07 34.9 4.9 29 11-39 24-52 (71)
36 2vc8_A Enhancer of mRNA-decapp 95.9 0.025 8.7E-07 35.0 5.8 64 8-78 5-70 (84)
37 3hfn_A ASL2047 protein; HFQ, S 95.4 0.11 3.7E-06 31.3 7.3 56 5-75 14-71 (72)
38 1ycy_A Conserved hypothetical 95.2 0.14 4.6E-06 30.3 7.0 41 6-47 10-50 (71)
39 1y96_B Gemin7, SIP3, GEM-assoc 94.7 0.28 9.7E-06 30.3 7.9 60 6-74 23-83 (85)
40 3hfo_A SSR3341 protein; HFQ, S 94.5 0.14 4.9E-06 30.6 6.0 55 5-74 12-68 (70)
41 2rm4_A CG6311-PB, DM EDC3; enh 94.1 0.35 1.2E-05 30.7 7.3 63 8-76 8-71 (103)
42 3rux_A BIRA bifunctional prote 92.5 0.19 6.5E-06 36.5 4.9 34 10-43 222-255 (270)
43 1ib8_A Conserved protein SP14. 91.8 0.2 7E-06 34.1 4.1 35 5-40 97-135 (164)
44 2eay_A Biotin [acetyl-COA-carb 88.4 0.38 1.3E-05 34.1 3.3 32 10-43 186-217 (233)
45 1bia_A BIRA bifunctional prote 88.2 1.2 4.3E-05 32.7 6.2 34 9-43 270-303 (321)
46 2xk0_A Polycomb protein PCL; t 85.9 3.7 0.00013 24.3 6.1 40 10-49 17-57 (69)
47 2ej9_A Putative biotin ligase; 83.6 1.6 5.6E-05 30.8 4.6 32 10-42 190-221 (237)
48 2dxu_A Biotin--[acetyl-COA-car 79.2 1.6 5.5E-05 30.9 3.3 31 11-43 188-218 (235)
49 4hcz_A PHD finger protein 1; p 78.8 3.6 0.00012 23.6 4.1 39 11-49 6-47 (58)
50 3rkx_A Biotin-[acetyl-COA-carb 78.0 2.8 9.6E-05 31.0 4.4 33 10-43 277-309 (323)
51 2eqj_A Metal-response element- 77.7 7.7 0.00026 22.7 5.4 38 11-48 16-56 (66)
52 2e12_A SM-like motif, hypothet 77.4 2.7 9.3E-05 26.3 3.5 18 12-29 28-45 (101)
53 3bfm_A Biotin protein ligase-l 77.2 3.6 0.00012 28.9 4.6 29 10-43 192-220 (235)
54 2m0o_A PHD finger protein 1; t 67.7 4 0.00014 24.7 2.5 39 10-48 28-69 (79)
55 3fb9_A Uncharacterized protein 63.5 13 0.00044 23.0 4.4 28 5-32 18-49 (90)
56 3by7_A Uncharacterized protein 60.2 29 0.00098 21.8 7.1 62 16-79 7-79 (100)
57 2e5q_A PHD finger protein 19; 57.0 17 0.00059 21.0 3.8 38 11-48 10-50 (63)
58 2qqr_A JMJC domain-containing 52.0 19 0.00067 23.2 3.9 24 10-33 7-30 (118)
59 1x4r_A PARP14 protein; WWE dom 50.3 0.91 3.1E-05 28.8 -2.7 20 26-45 34-53 (99)
60 2e5p_A Protein PHF1, PHD finge 46.1 43 0.0015 19.6 5.9 38 11-48 12-52 (68)
61 1ky9_A Protease DO, DEGP, HTRA 41.8 41 0.0014 25.6 5.0 30 13-42 111-140 (448)
62 4a8c_A Periplasmic PH-dependen 41.4 41 0.0014 25.4 4.9 30 13-42 88-117 (436)
63 1sg5_A ORF, hypothetical prote 41.1 10 0.00035 23.1 1.2 51 10-72 23-73 (86)
64 2xdp_A Lysine-specific demethy 38.7 41 0.0014 21.7 3.9 23 11-33 67-89 (123)
65 2wr8_A Putative uncharacterize 37.1 31 0.0011 24.9 3.4 21 22-42 171-191 (259)
66 2qqr_A JMJC domain-containing 36.5 48 0.0016 21.3 3.9 22 11-32 66-87 (118)
67 2zbv_A Uncharacterized conserv 35.3 34 0.0011 24.8 3.4 21 22-42 167-187 (263)
68 3stj_A Protease DEGQ; serine p 34.5 58 0.002 23.8 4.6 29 13-41 88-116 (345)
69 3qx1_A FAS-associated factor 1 33.9 26 0.00089 20.3 2.2 22 13-34 8-29 (84)
70 3sti_A Protease DEGQ; serine p 33.7 58 0.002 22.7 4.4 29 13-41 88-116 (245)
71 3p8d_A Medulloblastoma antigen 33.5 71 0.0024 18.4 4.2 25 11-35 9-33 (67)
72 3kl9_A PEPA, glutamyl aminopep 31.2 38 0.0013 25.1 3.2 24 8-31 95-118 (355)
73 3tee_A Flagella basal BODY P-r 31.2 33 0.0011 23.9 2.7 23 9-31 168-190 (219)
74 3pv2_A DEGQ; trypsin fold, PDZ 30.5 55 0.0019 24.9 4.1 30 13-42 102-131 (451)
75 3lgi_A Protease DEGS; stress-s 29.6 90 0.0031 21.2 4.7 28 13-40 77-104 (237)
76 3tjo_A Serine protease HTRA1; 29.0 93 0.0032 21.1 4.7 30 12-41 86-115 (231)
77 3qii_A PHD finger protein 20; 28.7 97 0.0033 18.7 4.2 26 10-35 23-48 (85)
78 1te0_A Protease DEGS; two doma 27.8 90 0.0031 22.2 4.6 30 13-42 66-95 (318)
79 1lcy_A HTRA2 serine protease; 27.8 94 0.0032 22.3 4.7 29 13-41 71-99 (325)
80 1y8t_A Hypothetical protein RV 26.7 80 0.0028 22.5 4.2 29 13-41 64-92 (324)
81 2cw5_A Bacterial fluorinating 24.6 41 0.0014 24.3 2.2 18 25-42 174-191 (255)
82 2equ_A PHD finger protein 20-l 23.5 1.2E+02 0.004 17.6 5.0 25 11-35 12-36 (74)
83 2p5z_X Type VI secretion syste 22.2 1.1E+02 0.0036 23.3 4.3 29 6-34 57-96 (491)
84 3mkv_A Putative amidohydrolase 22.2 18 0.00062 24.4 -0.1 24 12-35 398-421 (426)
85 2dzk_A UBX domain-containing p 22.2 74 0.0025 19.5 2.9 23 11-33 12-34 (109)
86 1sqr_A 50S ribosomal protein L 22.1 67 0.0023 19.9 2.6 36 5-40 33-68 (95)
87 2cr5_A Reproduction 8; UBX dom 21.9 64 0.0022 19.7 2.5 24 12-35 23-46 (109)
88 4gop_A Putative uncharacterize 21.9 1.3E+02 0.0046 18.6 4.1 28 5-41 11-38 (114)
89 3j21_c 50S ribosomal protein L 21.8 72 0.0025 19.4 2.6 35 5-39 33-67 (87)
90 1wj4_A KIAA0794 protein; UBX d 21.8 54 0.0019 20.7 2.2 23 13-35 44-66 (124)
91 2pi2_E Replication protein A 1 21.7 1.1E+02 0.0036 20.1 3.7 14 5-18 36-49 (142)
92 1rqp_A 5'-fluoro-5'-deoxyadeno 21.4 67 0.0023 23.8 2.9 22 21-42 198-220 (299)
93 3frn_A Flagellar protein FLGA; 21.2 72 0.0025 23.4 3.0 23 9-31 237-260 (278)
94 3num_A Serine protease HTRA1; 20.8 1.8E+02 0.0061 20.8 5.1 28 13-40 70-97 (332)
95 2q6k_A Chlorinase; complex wit 20.4 56 0.0019 23.8 2.3 21 22-42 172-193 (283)
96 4bbk_A Kindlin-1, fermitin fam 20.3 27 0.00091 23.9 0.5 43 28-71 41-83 (165)
No 1
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.8e-26 Score=145.99 Aligned_cols=82 Identities=22% Similarity=0.419 Sum_probs=70.2
Q ss_pred ChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCC---CeeEEEecEEEEcCCcEEEEEecCccc
Q 034299 3 GGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKE---GVQQLVLGLYIIRGDNISIVGEVDEEL 79 (98)
Q Consensus 3 ~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~---~~~~r~lg~v~irG~~I~~i~~~d~~~ 79 (98)
|.+.|.+++|++|+|+|+|||+|.|+|.|||+||||+|+||.|++..+++ +...+.+|+++|||++|++|.+.+++.
T Consensus 11 p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~~ 90 (96)
T 3bw1_A 11 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSEDD 90 (96)
T ss_dssp HHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC---
T ss_pred HHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCccc
Confidence 67899999999999999999999999999999999999999999875432 356789999999999999999999988
Q ss_pred cccCC
Q 034299 80 DSHLD 84 (98)
Q Consensus 80 e~~~~ 84 (98)
++.+|
T Consensus 91 d~~~~ 95 (96)
T 3bw1_A 91 DGAVE 95 (96)
T ss_dssp --CCC
T ss_pred ccccc
Confidence 87776
No 2
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.92 E-value=1.5e-24 Score=133.58 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=65.2
Q ss_pred CChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecCc
Q 034299 2 SGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDE 77 (98)
Q Consensus 2 ~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d~ 77 (98)
.|.+.|.+++|++|+|+|+|||+|.|+|.|||+|||++|+||.|++. +...+.+|.++|||++|++|.++++
T Consensus 4 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~----~~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 4 RPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQD----GEVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEET----TEEEEEEEEEEECGGGEEEEEEC--
T ss_pred hHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEee----CCceeECCEEEECCCEEEEEEeCCC
Confidence 37889999999999999999999999999999999999999999874 2567899999999999999998764
No 3
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.91 E-value=3.2e-24 Score=132.77 Aligned_cols=73 Identities=25% Similarity=0.356 Sum_probs=66.6
Q ss_pred CCChhhHHhhcCCeEEEEECCC-cEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecCc
Q 034299 1 MSGGPGLESLVEQQISVITNDG-RNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDE 77 (98)
Q Consensus 1 m~~~~~L~~~i~k~V~V~l~~G-r~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d~ 77 (98)
|.|.+.|.++++++|+|+|++| +++.|+|.|||+|||++|+||+|++. +...+.+|.++|||++|++|.++|+
T Consensus 4 ~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~----~~~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 4 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKG----EEKVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEET----TEEEEEEEEEEECGGGEEEEEEC--
T ss_pred cchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEec----CCcEeECCeEEEeCCeEEEEEeCCC
Confidence 6788999999999999999999 99999999999999999999999873 3567899999999999999999864
No 4
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.91 E-value=1.9e-24 Score=137.41 Aligned_cols=77 Identities=27% Similarity=0.435 Sum_probs=65.9
Q ss_pred CChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEee-cC-----CCeeEEEecEEEEcCCcEEEEEec
Q 034299 2 SGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYS-TK-----EGVQQLVLGLYIIRGDNISIVGEV 75 (98)
Q Consensus 2 ~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~-~~-----~~~~~r~lg~v~irG~~I~~i~~~ 75 (98)
.|.+.|.+++|++|+|+|+|||+|.|+|.|||+||||+|+||+|++.. ++ .+...+.+|+++|||++|++|.+.
T Consensus 4 ~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~ 83 (91)
T 1d3b_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVE 83 (91)
T ss_dssp ---CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEE
T ss_pred ChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcC
Confidence 477899999999999999999999999999999999999999998643 21 235688999999999999999988
Q ss_pred Ccc
Q 034299 76 DEE 78 (98)
Q Consensus 76 d~~ 78 (98)
+..
T Consensus 84 ~~~ 86 (91)
T 1d3b_B 84 GPP 86 (91)
T ss_dssp ECC
T ss_pred CCC
Confidence 654
No 5
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.91 E-value=3.6e-24 Score=141.75 Aligned_cols=77 Identities=30% Similarity=0.528 Sum_probs=58.2
Q ss_pred hhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCC---CeeEEEecEEEEcCCcEEEEEecCcccc
Q 034299 4 GPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKE---GVQQLVLGLYIIRGDNISIVGEVDEELD 80 (98)
Q Consensus 4 ~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~---~~~~r~lg~v~irG~~I~~i~~~d~~~e 80 (98)
...|.+|++++|+|.|+|||+|.|+|.|||+||||+|+||.|++..++. ....+.+|+++|||++|++|.+.|...|
T Consensus 25 i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~ee 104 (113)
T 4emk_C 25 ILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGSEE 104 (113)
T ss_dssp -------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC----
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCcccc
Confidence 4689999999999999999999999999999999999999999865321 2468899999999999999999996554
No 6
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.91 E-value=8e-24 Score=130.78 Aligned_cols=72 Identities=25% Similarity=0.356 Sum_probs=66.1
Q ss_pred CChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecCc
Q 034299 2 SGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDE 77 (98)
Q Consensus 2 ~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d~ 77 (98)
.|.+.|.+++|++|+|+|+||++|.|+|.|||+|||++|+||.|++. +...+.+|.++|||++|++|.++|.
T Consensus 4 ~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~----~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (77)
T 1i4k_A 4 RPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQN----GEVVRKVGSVVIRGDTVVFVSPAPG 75 (77)
T ss_dssp CHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEET----TEEEEEEEEEEECGGGEEEEEECC-
T ss_pred cHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEec----CCcEeECCEEEECCCEEEEEEeCCC
Confidence 48889999999999999999999999999999999999999999874 2467899999999999999999875
No 7
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.90 E-value=1.4e-23 Score=132.84 Aligned_cols=76 Identities=26% Similarity=0.307 Sum_probs=65.7
Q ss_pred CChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecCccccc
Q 034299 2 SGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDEELDS 81 (98)
Q Consensus 2 ~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d~~~e~ 81 (98)
.|.+.|.+++|++|+|+|++|++|.|+|.|||+|||++|+||.|+.. +...+.+|.++|||++|++|.++|++.++
T Consensus 6 ~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~----g~~~~~lg~v~IRG~nI~~i~~~d~~~~~ 81 (86)
T 3s6n_F 6 NPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID----GALSGHLGEVLIRCNNVLYIRGVEEEEED 81 (86)
T ss_dssp CHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEET----TEEEEEESSEEECGGGEEEEEECC-----
T ss_pred CcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcC----CceeeEccEEEEeCCeEEEEEeCCccccc
Confidence 47789999999999999999999999999999999999999998752 34678999999999999999999877653
No 8
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.90 E-value=4e-23 Score=132.84 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=65.6
Q ss_pred CChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecCc
Q 034299 2 SGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDE 77 (98)
Q Consensus 2 ~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d~ 77 (98)
.|...|.++++++|+|+|++||+|.|+|.|||+||||+|+||+|++.+ +..++.+|.++|||++|++|.+..+
T Consensus 20 ~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~---~~~~~~lg~v~IRG~nI~~i~p~~~ 92 (94)
T 4emk_A 20 LPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTV---TGVTEKHSEMLLNGNGMCMLIPGGK 92 (94)
T ss_dssp CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETT---TCCEEEEEEEEECSTTEEEEEECC-
T ss_pred cCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecC---CCcEeEcCEEEEcCCEEEEEEeCCC
Confidence 577899999999999999999999999999999999999999999732 2457899999999999999998754
No 9
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.90 E-value=1.1e-23 Score=129.86 Aligned_cols=71 Identities=27% Similarity=0.410 Sum_probs=64.2
Q ss_pred CChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecC
Q 034299 2 SGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVD 76 (98)
Q Consensus 2 ~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d 76 (98)
.|.+.|.+++|++|+|+|+||++|.|+|.|||+|||++|+||.|++. +...+.+|.++|||++|++|.+.|
T Consensus 4 ~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~----~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVN----GKKTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp HHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEET----TEEEEEEEEEEEEGGGSSEEEEC-
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEec----CCcccEecEEEEcCCeEEEEEecC
Confidence 36679999999999999999999999999999999999999999862 346789999999999999999875
No 10
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.90 E-value=1.1e-23 Score=130.39 Aligned_cols=71 Identities=32% Similarity=0.623 Sum_probs=52.8
Q ss_pred ChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecCc
Q 034299 3 GGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDE 77 (98)
Q Consensus 3 ~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d~ 77 (98)
+.+.|.+++|++|+|+|+|||+|.|+|.|||+|||++|+||.|++.. .+.+.+|.++|||++|++|.+.|.
T Consensus 5 ~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~----~~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 5 HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS----GQQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp ---------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC--------CBSSEEECSSSEEEEEC---
T ss_pred chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccC----CcEeEcCEEEECCCeEEEEEeccC
Confidence 45799999999999999999999999999999999999999998642 346789999999999999998863
No 11
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.90 E-value=3e-23 Score=129.54 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=64.1
Q ss_pred ChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecCc
Q 034299 3 GGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDE 77 (98)
Q Consensus 3 ~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d~ 77 (98)
|.+.|.+++|++|+|+|+|||+|.|+|.|||+|||++|+||+|++.. ...+.+|.++|||++|++|.++++
T Consensus 10 P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~----~~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 10 AHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp HHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSS----SCEEEEEEEEECGGGEEEEEEC--
T ss_pred hHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecC----CceeECCEEEECCCEEEEEEecCC
Confidence 66799999999999999999999999999999999999999998742 457899999999999999998864
No 12
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.89 E-value=3.9e-23 Score=129.13 Aligned_cols=70 Identities=27% Similarity=0.489 Sum_probs=64.4
Q ss_pred CChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecC
Q 034299 2 SGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVD 76 (98)
Q Consensus 2 ~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d 76 (98)
.|...|.++++++|+|+|+|||+|.|+|.|||+|||++|+||.|+ . +...+.+|.++|||++|++|.++|
T Consensus 11 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~--~---~~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 11 TLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI--I---DGNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp CHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE--E---TTEEEEEEEEEECGGGEEEEEECC
T ss_pred chHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE--c---CCcccCCCEEEECCCEEEEEEeCC
Confidence 467899999999999999999999999999999999999999998 2 246789999999999999999875
No 13
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.89 E-value=9.4e-23 Score=127.98 Aligned_cols=70 Identities=29% Similarity=0.411 Sum_probs=64.4
Q ss_pred CCChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEe
Q 034299 1 MSGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGE 74 (98)
Q Consensus 1 m~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~ 74 (98)
+.|...|.+++|++|+|+|+||++|.|+|.|||+|||++|+||+|++. +...+.+|.++|||++|++|.+
T Consensus 14 ~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~----~~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 14 QRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELED----GEVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp TCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEET----TEEEEEEEEEEECGGGEEEEEC
T ss_pred cChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEec----CCcccCCCEEEECCCEEEEEEC
Confidence 468889999999999999999999999999999999999999999874 2567899999999999999964
No 14
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.89 E-value=9.1e-23 Score=130.75 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=64.2
Q ss_pred CChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecC-CC--------eeEEEecEEEEcCCcEEEE
Q 034299 2 SGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK-EG--------VQQLVLGLYIIRGDNISIV 72 (98)
Q Consensus 2 ~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~-~~--------~~~r~lg~v~irG~~I~~i 72 (98)
.|...|.+++|++|+|+|++||+|.|+|.|||+||||+|+||.|++.... ++ ..++.+|+++|||++|++|
T Consensus 9 ~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~I 88 (93)
T 4emg_A 9 EPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILI 88 (93)
T ss_dssp CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEEE
T ss_pred CCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEEE
Confidence 47788999999999999999999999999999999999999999986421 11 3578999999999999999
Q ss_pred Eec
Q 034299 73 GEV 75 (98)
Q Consensus 73 ~~~ 75 (98)
.++
T Consensus 89 ~p~ 91 (93)
T 4emg_A 89 APP 91 (93)
T ss_dssp ECC
T ss_pred Eec
Confidence 875
No 15
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.89 E-value=4.9e-23 Score=134.79 Aligned_cols=80 Identities=26% Similarity=0.251 Sum_probs=55.5
Q ss_pred CCChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecCcccc
Q 034299 1 MSGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDEELD 80 (98)
Q Consensus 1 m~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d~~~e 80 (98)
+.|...|.+++|++|+|+|++|++|.|+|.+||+||||+|+||+|+.. ++...+.+|.++|||++|.+|..+|+.++
T Consensus 15 ~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~---dg~~~~~lg~v~IRG~nI~~I~~pd~l~d 91 (105)
T 4emh_A 15 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMP---DGDKFFRLPECYIRGNNIKYLRIQDEVLS 91 (105)
T ss_dssp -----------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECT---TSCEEEEEEEEEECGGGEEEEEC------
T ss_pred CcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEcc---CCceeeEcCeEEEeCCeEEEEecCHHHhh
Confidence 467889999999999999999999999999999999999999999743 23457889999999999999999998877
Q ss_pred ccC
Q 034299 81 SHL 83 (98)
Q Consensus 81 ~~~ 83 (98)
++.
T Consensus 92 ~p~ 94 (105)
T 4emh_A 92 QVA 94 (105)
T ss_dssp ---
T ss_pred hhh
Confidence 644
No 16
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.89 E-value=7.4e-23 Score=131.27 Aligned_cols=72 Identities=29% Similarity=0.361 Sum_probs=61.5
Q ss_pred CCChhhHHhhcCCeEEEEECCC-cEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecC
Q 034299 1 MSGGPGLESLVEQQISVITNDG-RNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVD 76 (98)
Q Consensus 1 m~~~~~L~~~i~k~V~V~l~~G-r~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d 76 (98)
|.|.+.|.+++|++|+|+|++| ++|.|+|.|||+|||++|+||+|++. +...+.+|.++|||++|++|.+++
T Consensus 20 ~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~----~~~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 20 VNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVA----GVSHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp ------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEET----TEEEEECCSEEECGGGEEEEEECC
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcC----CCeEeEcCEEEEcCCeEEEEEeCC
Confidence 4578899999999999999999 99999999999999999999999862 356789999999999999999875
No 17
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.88 E-value=2e-23 Score=139.33 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=66.5
Q ss_pred CCChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeec--C----CCee-----EEEecEEEEcCCcE
Q 034299 1 MSGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYST--K----EGVQ-----QLVLGLYIIRGDNI 69 (98)
Q Consensus 1 m~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~--~----~~~~-----~r~lg~v~irG~~I 69 (98)
+.|...|.++++++|+|+|++||+|.|+|+|||+||||+|+||+|++... + ++.. .+.+|+++|||++|
T Consensus 27 ~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nV 106 (121)
T 2fwk_A 27 ILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNV 106 (121)
T ss_dssp CCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGE
T ss_pred cCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEE
Confidence 35778899999999999999999999999999999999999999998541 1 1223 68899999999999
Q ss_pred EEEEecCcccccc
Q 034299 70 SIVGEVDEELDSH 82 (98)
Q Consensus 70 ~~i~~~d~~~e~~ 82 (98)
++|.+.+++.+..
T Consensus 107 v~I~~~~~~~~~~ 119 (121)
T 2fwk_A 107 AMLVPGGDPDSFN 119 (121)
T ss_dssp EEEESSSCC----
T ss_pred EEEEecCCCCCcC
Confidence 9999987765543
No 18
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.88 E-value=2e-22 Score=124.52 Aligned_cols=72 Identities=18% Similarity=0.057 Sum_probs=65.3
Q ss_pred CCChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecC
Q 034299 1 MSGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVD 76 (98)
Q Consensus 1 m~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d 76 (98)
|.|...|++++|++|+|+|++|++|+|+|.+||+|||++|+||+|+.. + ...+.+|.++|||++|.+|..+|
T Consensus 4 ~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~---~-~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR---D-GRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECT---T-SCEEEEEEEEECGGGEEEEEECC
T ss_pred cCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECC---C-CcEEEcCeEEEeCCEEEEEEcCC
Confidence 568889999999999999999999999999999999999999999852 2 24789999999999999999875
No 19
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.87 E-value=1.7e-22 Score=129.40 Aligned_cols=72 Identities=22% Similarity=0.349 Sum_probs=65.1
Q ss_pred CChhhHHhhcCCeEEEEE----CCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecC
Q 034299 2 SGGPGLESLVEQQISVIT----NDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVD 76 (98)
Q Consensus 2 ~~~~~L~~~i~k~V~V~l----~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d 76 (98)
.|...|.++++++++|++ ++||+|.|+|.|||+|||++|+||+|++.+ +..++.+|.++|||+||++|.+.+
T Consensus 16 ~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~---~~~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 16 QPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSK---TKSRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp CHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSS---SCCEEEEEEEEECGGGEEEEEEC-
T ss_pred CCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecC---CCceeEcCeEEEeCCEEEEEEeCC
Confidence 577899999999999999 999999999999999999999999998743 245789999999999999999875
No 20
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.87 E-value=7.3e-22 Score=143.91 Aligned_cols=76 Identities=28% Similarity=0.451 Sum_probs=66.6
Q ss_pred CChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEe-ecC-----CCeeEEEecEEEEcCCcEEEEEec
Q 034299 2 SGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVY-STK-----EGVQQLVLGLYIIRGDNISIVGEV 75 (98)
Q Consensus 2 ~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~-~~~-----~~~~~r~lg~v~irG~~I~~i~~~ 75 (98)
.+...|++|++|+|+|+|+|||+|+|+|+|||+||||+|+||+|++. +++ +..+++++|++||||+||++|...
T Consensus 4 ~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve 83 (231)
T 3pgw_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVE 83 (231)
T ss_pred CchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEec
Confidence 45679999999999999999999999999999999999999999974 221 235789999999999999999876
Q ss_pred Cc
Q 034299 76 DE 77 (98)
Q Consensus 76 d~ 77 (98)
+.
T Consensus 84 ~p 85 (231)
T 3pgw_B 84 GP 85 (231)
T ss_pred CC
Confidence 53
No 21
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.87 E-value=7.4e-22 Score=131.46 Aligned_cols=73 Identities=22% Similarity=0.257 Sum_probs=66.6
Q ss_pred CCChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecCc
Q 034299 1 MSGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDE 77 (98)
Q Consensus 1 m~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d~ 77 (98)
|.|..+|.++++++|+|+|++|++|.|+|.+||+||||+|+||+|+.. +...+.+|.++|||+||++|.++|.
T Consensus 1 M~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~----~~~~~~lg~v~IRG~nI~~I~~pd~ 73 (119)
T 1b34_A 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLK----NREPVQLETLSIRGNNIRYFILPDS 73 (119)
T ss_dssp -CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECT----TSCCEEEEEEEECGGGEEEEECCTT
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecC----CCceeEcceEEEcCCeEEEEEeccc
Confidence 889999999999999999999999999999999999999999999852 2345789999999999999999886
No 22
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.86 E-value=1.1e-21 Score=130.37 Aligned_cols=76 Identities=21% Similarity=0.331 Sum_probs=62.6
Q ss_pred CChhhHHhhc--CCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeec-CC--C-------eeEEEecEEEEcCCcE
Q 034299 2 SGGPGLESLV--EQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYST-KE--G-------VQQLVLGLYIIRGDNI 69 (98)
Q Consensus 2 ~~~~~L~~~i--~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~-~~--~-------~~~r~lg~v~irG~~I 69 (98)
.|...|.+++ +++|+|.|++||+|.|+|.|||+||||+|+||.|++... +. + ..++.+|.+||||++|
T Consensus 27 ~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nV 106 (118)
T 1b34_B 27 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 106 (118)
T ss_dssp CHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGE
T ss_pred ChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEE
Confidence 5778999999 599999999999999999999999999999999987542 11 1 1367899999999999
Q ss_pred EEEEecCc
Q 034299 70 SIVGEVDE 77 (98)
Q Consensus 70 ~~i~~~d~ 77 (98)
++|.+.+.
T Consensus 107 v~I~~~~~ 114 (118)
T 1b34_B 107 IVVLRNPL 114 (118)
T ss_dssp EEEEECCC
T ss_pred EEEEeCch
Confidence 99998764
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.83 E-value=3.6e-20 Score=124.58 Aligned_cols=75 Identities=19% Similarity=0.084 Sum_probs=66.6
Q ss_pred CCChhhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecCccc
Q 034299 1 MSGGPGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDEEL 79 (98)
Q Consensus 1 m~~~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d~~~ 79 (98)
|.|..+|.+++|++|+|+|++|++|.|+|.+||+||||+|+||+|+.. ++ +...++.+||||++|.+|..+|.-.
T Consensus 4 ~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~---~g-~~~~l~~v~IRGnnI~~I~lpd~l~ 78 (126)
T 2y9a_D 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR---DG-RVAQLEQVYIRGSKIRFLILPDMLK 78 (126)
T ss_dssp CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECT---TS-CCEEEEEEEECGGGEEEEECCSSCS
T ss_pred ccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcC---CC-cEeecccEEEeCCEEEEEEcccccc
Confidence 468899999999999999999999999999999999999999999742 22 3678999999999999999887543
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.80 E-value=7.8e-20 Score=123.50 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=62.6
Q ss_pred hhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecCccccc
Q 034299 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDEELDS 81 (98)
Q Consensus 5 ~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d~~~e~ 81 (98)
+.|.+++|++|+|+|++|++|.|+|.|||+|||++|+||.|+. .+.+|.++|||++|++|.++++..+.
T Consensus 3 ~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~--------~~~lg~v~IRG~nI~~I~~~d~~~d~ 71 (130)
T 1m5q_A 3 AELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA--------GEKFNRVFIMYRYIVHIDSTERRIDM 71 (130)
T ss_dssp HHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT--------CCEEEEEEECGGGEEEEEECCCCCCH
T ss_pred hHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc--------CCEeceEEEeCCeEEEEEcCCcccCH
Confidence 5899999999999999999999999999999999999999962 24789999999999999999876443
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=99.11 E-value=1.6e-10 Score=72.95 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=57.7
Q ss_pred hhHHhhcCCeEEEEECCCcEEEEEEEEEc-CCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecCccccc
Q 034299 5 PGLESLVEQQISVITNDGRNIVGVLKGFD-QATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDEELDS 81 (98)
Q Consensus 5 ~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D-~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d~~~e~ 81 (98)
..|++|+||+|.|.+.||++|+|.|.+|| ...|++|.|+.+ ++ ....++|.|..|..|...++..++
T Consensus 10 ~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~~------~~----~~~~~iI~G~aI~eI~v~~~~~~~ 77 (86)
T 1y96_A 10 LEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLE------DG----SMSVTGIMGHAVQTVETMNEGDHR 77 (86)
T ss_dssp HHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEECT------TS----CEEEEEECGGGEEEEEEEECCCHH
T ss_pred HHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeeccc------CC----eEEEEEEecceEEEEEEecchhHH
Confidence 58999999999999999999999999999 999999999822 11 247899999999999988765543
No 26
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.86 E-value=0.0022 Score=38.99 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=41.3
Q ss_pred hHHhhc--CCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecC
Q 034299 6 GLESLV--EQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVD 76 (98)
Q Consensus 6 ~L~~~i--~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d 76 (98)
.|+++. ..+|.|.|.+|..+.|.+.+||+|+ +.|++. ...+|--..|..|.+..
T Consensus 13 ~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~-vlL~~~----------------~~~LIYKhAIsTI~p~~ 68 (74)
T 2ylb_A 13 FLNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLKNT----------------VSQMVYKHAISTVVPSR 68 (74)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSE-EEEESS----------------SEEEEEGGGEEEEEESS
T ss_pred HHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEECC----------------ceEEEEeeeEEEEeEcc
Confidence 456666 7899999999999999999999999 555431 23467777777777653
No 27
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.68 E-value=0.0035 Score=38.85 Aligned_cols=36 Identities=28% Similarity=0.460 Sum_probs=29.2
Q ss_pred hHHhhc--CCeEEEEECCCcEEEEEEEEEcCCCceEecc
Q 034299 6 GLESLV--EQQISVITNDGRNIVGVLKGFDQATNIILDE 42 (98)
Q Consensus 6 ~L~~~i--~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~ 42 (98)
.|+++. ..+|+|-|.+|-.+.|.+.+||+|+ +.|++
T Consensus 11 fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ft-VlL~~ 48 (82)
T 1u1s_A 11 YLNTLRKERVPVSIYLVNGIKLQGQIESFDQFV-ILLKN 48 (82)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEES
T ss_pred HHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceE-EEEec
Confidence 444444 6889999999999999999999999 55543
No 28
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.47 E-value=0.0097 Score=37.75 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=53.1
Q ss_pred hhhHHhhcCCeEEEEECCCcEEEEEEEEEc-CCCceEecceEEEEeecC--CC---eeEEEecEEEEcCCcEEEEEecCc
Q 034299 4 GPGLESLVEQQISVITNDGRNIVGVLKGFD-QATNIILDESHERVYSTK--EG---VQQLVLGLYIIRGDNISIVGEVDE 77 (98)
Q Consensus 4 ~~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D-~~~NlvL~~~~e~~~~~~--~~---~~~r~lg~v~irG~~I~~i~~~d~ 77 (98)
...-.+|+|+++.+..+.+-.|+|+|...| +..-+.|+|+.-+=+... ++ .......-++.||+.|.-+...+.
T Consensus 11 ~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e~ 90 (95)
T 2fb7_A 11 PSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEP 90 (95)
T ss_dssp -----CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESCC
T ss_pred CCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEecC
Confidence 345678999999999999999999999999 666788999855432211 10 123345788999999999887654
Q ss_pred c
Q 034299 78 E 78 (98)
Q Consensus 78 ~ 78 (98)
+
T Consensus 91 p 91 (95)
T 2fb7_A 91 P 91 (95)
T ss_dssp S
T ss_pred C
Confidence 3
No 29
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=96.45 E-value=0.0039 Score=40.21 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=29.0
Q ss_pred hHHhhcC--CeEEEEECCCcEEEEEEEEEcCCCceEecc
Q 034299 6 GLESLVE--QQISVITNDGRNIVGVLKGFDQATNIILDE 42 (98)
Q Consensus 6 ~L~~~i~--k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~ 42 (98)
.|+.+.. .+|.|.|.+|-.+.|.+.+||+|+ +.|++
T Consensus 13 fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~-VlL~~ 50 (104)
T 2y90_A 13 FLNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLKN 50 (104)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEES
T ss_pred HHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEEC
Confidence 4555554 489999999999999999999999 55543
No 30
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=96.43 E-value=0.025 Score=35.41 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=53.1
Q ss_pred HhhcCCeEEEEECCCcEEEEEEEEEc-CCCceEecceEEEEeecCCC-----eeEEEecEEEEcCCcEEEEEecCc
Q 034299 8 ESLVEQQISVITNDGRNIVGVLKGFD-QATNIILDESHERVYSTKEG-----VQQLVLGLYIIRGDNISIVGEVDE 77 (98)
Q Consensus 8 ~~~i~k~V~V~l~~Gr~i~G~L~~~D-~~~NlvL~~~~e~~~~~~~~-----~~~r~lg~v~irG~~I~~i~~~d~ 77 (98)
..|+|+++.+..+.+-.|+|+|...| +..-+.|+|+..+=+..... .......-++.||+.|.-+...+.
T Consensus 9 ~~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~ 84 (88)
T 2vxe_A 9 LPELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNN 84 (88)
T ss_dssp SCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCC
T ss_pred CcccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEecc
Confidence 56899999999999999999999999 66678899986653321111 122345788999999999887643
No 31
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.30 E-value=0.0069 Score=37.23 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=39.1
Q ss_pred hHHhhc--CCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecC
Q 034299 6 GLESLV--EQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVD 76 (98)
Q Consensus 6 ~L~~~i--~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d 76 (98)
.|+.+. ..+|.|.|.+|..+.|.+.+||+|+ +.|++- ...+|--.-|..|.+..
T Consensus 12 fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~-VlL~~g----------------~~qLIYKhAISTI~P~~ 67 (79)
T 3sb2_A 12 FLNALRKEHVPVSIYLVNGIKLQGHVESFDQYV-VLLRNT----------------VTQMVYKHAISTVVPAR 67 (79)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEESS----------------SEEEEEGGGEEEEEESS
T ss_pred HHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcE-EEEECC----------------ceEEEEeeeEEEEeecC
Confidence 445554 4669999999999999999999999 445321 12356677777777653
No 32
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.17 E-value=0.012 Score=35.90 Aligned_cols=35 Identities=23% Similarity=0.509 Sum_probs=29.4
Q ss_pred hHHhhc--CCeEEEEECCCcEEEEEEEEEcCCCceEec
Q 034299 6 GLESLV--EQQISVITNDGRNIVGVLKGFDQATNIILD 41 (98)
Q Consensus 6 ~L~~~i--~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~ 41 (98)
.|+++. ..+|.|.|.+|-.+.|.+.+||+|+ +.|.
T Consensus 11 fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~-VlL~ 47 (77)
T 1kq1_A 11 ALENFKANQTEVTVFFLNGFQMKGVIEEYDKYV-VSLN 47 (77)
T ss_dssp HHHHHHHHTCEEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcE-EEEE
Confidence 455666 7899999999999999999999999 4443
No 33
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.16 E-value=0.0092 Score=39.54 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=45.0
Q ss_pred hHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEe--cceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecCcc
Q 034299 6 GLESLVEQQISVITNDGRNIVGVLKGFDQATNIIL--DESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDEE 78 (98)
Q Consensus 6 ~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL--~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d~~ 78 (98)
.+.+|+|+.|.|+|+||..+.|++..+|.. +|.| ++|...+. -|+.+.|.-+..++.+
T Consensus 6 ~~sqFlGy~V~v~LkDgs~~qG~I~~vd~k-~LtL~~~~a~~s~~--------------~I~asdI~DLkVl~~~ 65 (125)
T 4a53_A 6 SVADFYGSNVEVLLNNDSKARGVITNFDSS-NSILQLRLANDSTK--------------SIVTKDIKDLRILPKN 65 (125)
T ss_dssp CHHHHTTCEEEEEETTSCEEEEEEEEEETT-TTEEEEEETTTEEE--------------EEEGGGEEEEEECCSC
T ss_pred cHHHhcCceEEEEECCCCEeeEEEEeecCC-eeEEeccccccccc--------------eeecccccceeeeecc
Confidence 368999999999999999999999999854 4777 88844321 5777777777666543
No 34
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.12 E-value=0.012 Score=36.09 Aligned_cols=35 Identities=29% Similarity=0.511 Sum_probs=28.9
Q ss_pred hHHhhc--CCeEEEEECCCcEEEEEEEEEcCCCceEec
Q 034299 6 GLESLV--EQQISVITNDGRNIVGVLKGFDQATNIILD 41 (98)
Q Consensus 6 ~L~~~i--~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~ 41 (98)
.|+++. ..+|+|-|.+|..+.|.+.+||+|+ +.|+
T Consensus 15 fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~-VlL~ 51 (78)
T 3ahu_A 15 FLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFT-VLLE 51 (78)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceE-EEEE
Confidence 445555 7899999999999999999999999 4443
No 35
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.91 E-value=0.016 Score=34.89 Aligned_cols=29 Identities=7% Similarity=0.256 Sum_probs=25.5
Q ss_pred cCCeEEEEECCCcEEEEEEEEEcCCCceE
Q 034299 11 VEQQISVITNDGRNIVGVLKGFDQATNII 39 (98)
Q Consensus 11 i~k~V~V~l~~Gr~i~G~L~~~D~~~Nlv 39 (98)
-..+|+|-|.+|-.+.|.+.+||+|+=++
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll 52 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMV 52 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 36789999999999999999999999444
No 36
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=95.89 E-value=0.025 Score=35.02 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=49.4
Q ss_pred HhhcCCeEEEEECCCc-EEEEEEEEEcC-CCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecCcc
Q 034299 8 ESLVEQQISVITNDGR-NIVGVLKGFDQ-ATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVDEE 78 (98)
Q Consensus 8 ~~~i~k~V~V~l~~Gr-~i~G~L~~~D~-~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d~~ 78 (98)
.+|+|+.|.+..+++- .|.|.+..+|. ..||.|.++.. ++. +.....+.+++..|..+...+.+
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f~------NG~-~~~s~eVtls~~DI~~L~ii~~~ 70 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFH------NGV-KCLVPEVTFRAGDITELKILEIP 70 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEEE------TTE-ECSSSEEEEEGGGCSEEEEEECC
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhhh------CCC-CCCCcEEEEEecChhheEEEecC
Confidence 4899999999999998 99999999995 46899999942 122 22334588888888777765543
No 37
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=95.43 E-value=0.11 Score=31.28 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=40.7
Q ss_pred hhHHhhc--CCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEec
Q 034299 5 PGLESLV--EQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEV 75 (98)
Q Consensus 5 ~~L~~~i--~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~ 75 (98)
..|+.|+ .++|.|.|.+|..+.|++.-+|.++ +.|.+..+ ..++|.-..|++|.+.
T Consensus 14 R~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~c-l~L~~~~~--------------~~~LI~R~AI~~Ikp~ 71 (72)
T 3hfn_A 14 RQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTC-VCIADENS--------------RQTTIWKQAIAYLQPK 71 (72)
T ss_dssp HHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSE-EEEEC-----------------CEEEEEGGGEEEEEEC
T ss_pred HHHHHHHhhCceEEEEecCCCEEEEEEEEECCCE-EEEEcCCC--------------CeEEEEeeeeEEEEeC
Confidence 3567777 4788999999999999999999998 44444311 1356777777777653
No 38
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=95.20 E-value=0.14 Score=30.34 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=33.5
Q ss_pred hHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEE
Q 034299 6 GLESLVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERV 47 (98)
Q Consensus 6 ~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~ 47 (98)
.|++|-|++|-+..-+...|+|.|.-||.-. +.|+|++.+.
T Consensus 10 tL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~ 50 (71)
T 1ycy_A 10 VLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI 50 (71)
T ss_dssp HHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETT
T ss_pred HHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHh
Confidence 5789999999999999999999999999887 8899998864
No 39
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=94.72 E-value=0.28 Score=30.34 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=47.2
Q ss_pred hHHhhcCCeEEEEECCCcEEEEEEEEEc-CCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEe
Q 034299 6 GLESLVEQQISVITNDGRNIVGVLKGFD-QATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGE 74 (98)
Q Consensus 6 ~L~~~i~k~V~V~l~~Gr~i~G~L~~~D-~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~ 74 (98)
.|....|++|.+.+.++-++.|++.++| ...|+..++- ..|- | .....++|++.|.++..
T Consensus 23 ~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L----~TPi-G----v~~eAlLR~~Dii~~sF 83 (85)
T 1y96_B 23 SLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQL----QTPI-G----VQAEALLRCSDIISYTF 83 (85)
T ss_dssp HHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEE----CCTT-C----CEEEEEEEGGGEEEEEE
T ss_pred HHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhc----CCCc-c----cchhhhhhcCCEEEEEe
Confidence 4566789999999999999999999999 6778776663 1121 1 25678999999999875
No 40
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=94.53 E-value=0.14 Score=30.58 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=39.2
Q ss_pred hhHHhhc--CCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEe
Q 034299 5 PGLESLV--EQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGE 74 (98)
Q Consensus 5 ~~L~~~i--~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~ 74 (98)
..|+.|+ ..+|.|.|.+|..+.|.+.-+|.++ +.|.+... -.++|.-..|++|.+
T Consensus 12 R~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~c-l~L~~~~~--------------~~~LI~r~AI~~I~p 68 (70)
T 3hfo_A 12 RQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDG-LGLVDDSE--------------RSTIVRLAAIAYITP 68 (70)
T ss_dssp HHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSE-EEEECTTC--------------CEEEEEGGGEEEEEE
T ss_pred HHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCE-EEEEcCCC--------------CeEEEEeeeeEEEee
Confidence 3566666 5889999999999999999999998 44444211 123566666776654
No 41
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=94.06 E-value=0.35 Score=30.68 Aligned_cols=63 Identities=8% Similarity=0.154 Sum_probs=47.9
Q ss_pred HhhcCCeEEEEECCCc-EEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEEEecC
Q 034299 8 ESLVEQQISVITNDGR-NIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGEVD 76 (98)
Q Consensus 8 ~~~i~k~V~V~l~~Gr-~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i~~~d 76 (98)
++|+|+-|.|.+.+-- .|.|.+..+|+ .+|.|.+|...-.. -+.....|.++-..|..+...+
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFrNGip-----lk~~~~EVtLsa~DI~~L~IIe 71 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFRNGVP-----LRKQNAEVVLKCTDIRSIDLIE 71 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEETTEE-----CSCSSSCEEEETTTEEEEEEEE
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhhcCcC-----cCCCCceEEEEecchhheeeec
Confidence 5899999999999986 99999999996 44999888653110 1234567778888888777754
No 42
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=92.47 E-value=0.19 Score=36.53 Aligned_cols=34 Identities=21% Similarity=0.460 Sum_probs=30.8
Q ss_pred hcCCeEEEEECCCcEEEEEEEEEcCCCceEecce
Q 034299 10 LVEQQISVITNDGRNIVGVLKGFDQATNIILDES 43 (98)
Q Consensus 10 ~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~ 43 (98)
++|++|++...+|..+.|+..++|....|+|+..
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 4689999998889999999999999999999764
No 43
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=91.76 E-value=0.2 Score=34.06 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=28.8
Q ss_pred hhHHhhcCCeEEEEEC----CCcEEEEEEEEEcCCCceEe
Q 034299 5 PGLESLVEQQISVITN----DGRNIVGVLKGFDQATNIIL 40 (98)
Q Consensus 5 ~~L~~~i~k~V~V~l~----~Gr~i~G~L~~~D~~~NlvL 40 (98)
.++.+++|+.|.|+++ +.+.++|+|.++|... +.|
T Consensus 97 ~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~-v~l 135 (164)
T 1ib8_A 97 DAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDE-LTM 135 (164)
T ss_dssp HHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTE-EEE
T ss_pred HHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCCE-EEE
Confidence 4678999999999993 4589999999999753 555
No 44
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=88.38 E-value=0.38 Score=34.07 Aligned_cols=32 Identities=13% Similarity=0.343 Sum_probs=27.0
Q ss_pred hcCCeEEEEECCCcEEEEEEEEEcCCCceEecce
Q 034299 10 LVEQQISVITNDGRNIVGVLKGFDQATNIILDES 43 (98)
Q Consensus 10 ~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~ 43 (98)
++|++|++...++ +.|+..++|.+..|+|+..
T Consensus 186 ~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~ 217 (233)
T 2eay_A 186 YLGEEVKLLGEGK--ITGKLVGLSEKGGALILTE 217 (233)
T ss_dssp TTTSEEEETTEEE--EEEEEEEECTTSCEEEEET
T ss_pred ccCCEEEEEECCe--EEEEEEEECCCCeEEEEEC
Confidence 4689999876544 9999999999999999753
No 45
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=88.18 E-value=1.2 Score=32.65 Aligned_cols=34 Identities=18% Similarity=0.606 Sum_probs=28.8
Q ss_pred hhcCCeEEEEECCCcEEEEEEEEEcCCCceEecce
Q 034299 9 SLVEQQISVITNDGRNIVGVLKGFDQATNIILDES 43 (98)
Q Consensus 9 ~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~ 43 (98)
.++|++|++... +..+.|+..++|..+.|+++..
T Consensus 270 ~~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~~ 303 (321)
T 1bia_A 270 NFINRPVKLIIG-DKEIFGISRGIDKQGALLLEQD 303 (321)
T ss_dssp TTTTSEEEEEET-TEEEEEEEEEECTTSCEEEEET
T ss_pred hhcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEEC
Confidence 347999999875 4589999999999999999753
No 46
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=85.88 E-value=3.7 Score=24.30 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=29.7
Q ss_pred hcCCeEEEEECCCcEEEEEEEEEcCCCc-eEecceEEEEee
Q 034299 10 LVEQQISVITNDGRNIVGVLKGFDQATN-IILDESHERVYS 49 (98)
Q Consensus 10 ~i~k~V~V~l~~Gr~i~G~L~~~D~~~N-lvL~~~~e~~~~ 49 (98)
.+|..|.++.+||+.|-|++....+..= +..+|-.+.|..
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~ 57 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCE 57 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEEC
T ss_pred ccCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeee
Confidence 4689999999999999999976664433 344666666654
No 47
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=83.59 E-value=1.6 Score=30.79 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=28.6
Q ss_pred hcCCeEEEEECCCcEEEEEEEEEcCCCceEecc
Q 034299 10 LVEQQISVITNDGRNIVGVLKGFDQATNIILDE 42 (98)
Q Consensus 10 ~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~ 42 (98)
++|++|++...++..+.|+..++|....|+ +.
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 479999999888877999999999999998 64
No 48
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=79.23 E-value=1.6 Score=30.91 Aligned_cols=31 Identities=10% Similarity=0.336 Sum_probs=24.5
Q ss_pred cCCeEEEEECCCcEEEEEEEEEcCCCceEecce
Q 034299 11 VEQQISVITNDGRNIVGVLKGFDQATNIILDES 43 (98)
Q Consensus 11 i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~ 43 (98)
+|++|++...++ +.|+..++|.+..|+++..
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~ 218 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRLD 218 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEECT
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEEC
Confidence 699999987766 9999999999999999753
No 49
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=78.85 E-value=3.6 Score=23.55 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=30.4
Q ss_pred cCCeEEEEECCCcEEEEEEEEEcCCC---ceEecceEEEEee
Q 034299 11 VEQQISVITNDGRNIVGVLKGFDQAT---NIILDESHERVYS 49 (98)
Q Consensus 11 i~k~V~V~l~~Gr~i~G~L~~~D~~~---NlvL~~~~e~~~~ 49 (98)
.|.-|.++-+||+.|-|++..+|+.. =+...|-.+.|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~ 47 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVL 47 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEE
Confidence 47889999999999999999998653 3455666666643
No 50
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=78.02 E-value=2.8 Score=30.99 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=27.5
Q ss_pred hcCCeEEEEECCCcEEEEEEEEEcCCCceEecce
Q 034299 10 LVEQQISVITNDGRNIVGVLKGFDQATNIILDES 43 (98)
Q Consensus 10 ~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~ 43 (98)
++|++|++... +..+.|+..++|....|+|++.
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~~ 309 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRDE 309 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEET
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEEC
Confidence 56899999764 5689999999999999999753
No 51
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=77.70 E-value=7.7 Score=22.72 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=28.8
Q ss_pred cCCeEEEEECCCcEEEEEEEEEcCC-C--ceEecceEEEEe
Q 034299 11 VEQQISVITNDGRNIVGVLKGFDQA-T--NIILDESHERVY 48 (98)
Q Consensus 11 i~k~V~V~l~~Gr~i~G~L~~~D~~-~--NlvL~~~~e~~~ 48 (98)
.|..|+.+-.||+.|.|++..+++. . =+...|..++|.
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~ 56 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWV 56 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred CCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEE
Confidence 5788999999999999999999974 2 233455555553
No 52
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=77.38 E-value=2.7 Score=26.30 Aligned_cols=18 Identities=22% Similarity=0.566 Sum_probs=16.4
Q ss_pred CCeEEEEECCCcEEEEEE
Q 034299 12 EQQISVITNDGRNIVGVL 29 (98)
Q Consensus 12 ~k~V~V~l~~Gr~i~G~L 29 (98)
..+|+++|.||+.+.|++
T Consensus 28 q~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 28 QERVRIELDDGSMIAGTV 45 (101)
T ss_dssp TCEEEEEETTSCEEEEEE
T ss_pred eeEEEEEEcCCCeEeeee
Confidence 378999999999999997
No 53
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=77.15 E-value=3.6 Score=28.85 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=25.3
Q ss_pred hcCCeEEEEECCCcEEEEEEEEEcCCCceEecce
Q 034299 10 LVEQQISVITNDGRNIVGVLKGFDQATNIILDES 43 (98)
Q Consensus 10 ~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~ 43 (98)
++|++|++ +| +.|+..++|....|+++..
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~~ 220 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRDE 220 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEECS
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEeC
Confidence 47899999 45 9999999999999999753
No 54
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=67.68 E-value=4 Score=24.70 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=30.2
Q ss_pred hcCCeEEEEECCCcEEEEEEEEEcCC---CceEecceEEEEe
Q 034299 10 LVEQQISVITNDGRNIVGVLKGFDQA---TNIILDESHERVY 48 (98)
Q Consensus 10 ~i~k~V~V~l~~Gr~i~G~L~~~D~~---~NlvL~~~~e~~~ 48 (98)
..|.-|.++-+||+.|-|++..+|.. +=+.+.|-.++|.
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~ 69 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 69 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEE
Confidence 46889999999999999999999864 3355566666654
No 55
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=63.51 E-value=13 Score=22.98 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.9
Q ss_pred hhHHhhcCCeEEEEECCCc----EEEEEEEEE
Q 034299 5 PGLESLVEQQISVITNDGR----NIVGVLKGF 32 (98)
Q Consensus 5 ~~L~~~i~k~V~V~l~~Gr----~i~G~L~~~ 32 (98)
..|..++|++|.++.+.|| +-.|+|...
T Consensus 18 ~~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 18 EEIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 4688999999999999996 578888764
No 56
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=60.21 E-value=29 Score=21.76 Aligned_cols=62 Identities=8% Similarity=0.117 Sum_probs=44.1
Q ss_pred EEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCC---C----eeEE----EecEEEEcCCcEEEEEecCccc
Q 034299 16 SVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKE---G----VQQL----VLGLYIIRGDNISIVGEVDEEL 79 (98)
Q Consensus 16 ~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~---~----~~~r----~lg~v~irG~~I~~i~~~d~~~ 79 (98)
.++|++|.++.|.+.-.|.. +.++|..+.+....+ + ...+ .-..++||.+.|+++..+.++.
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~~eV 79 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKDDI 79 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBCHHH
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCCHHH
Confidence 46799999999999966543 889999887753221 1 1110 1357899999999999887654
No 57
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.97 E-value=17 Score=21.00 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=29.9
Q ss_pred cCCeEEEEECCCcEEEEEEEEEcCC---CceEecceEEEEe
Q 034299 11 VEQQISVITNDGRNIVGVLKGFDQA---TNIILDESHERVY 48 (98)
Q Consensus 11 i~k~V~V~l~~Gr~i~G~L~~~D~~---~NlvL~~~~e~~~ 48 (98)
.|.-|..+-+||+.|-|++..+|.. +=+...|..+.|.
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv 50 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWV 50 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCSTTSEEEEEETTSCEEEE
T ss_pred cCCEEEEEecCCCEEEEEEEEEecCCCEEEEEEccCceeEE
Confidence 5788999999999999999999955 4455566666654
No 58
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=52.05 E-value=19 Score=23.16 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=21.6
Q ss_pred hcCCeEEEEECCCcEEEEEEEEEc
Q 034299 10 LVEQQISVITNDGRNIVGVLKGFD 33 (98)
Q Consensus 10 ~i~k~V~V~l~~Gr~i~G~L~~~D 33 (98)
-+|.+|..+-++||.|.|++.+..
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEE
T ss_pred ccCCEEEEECCCCCEEeEEEEEEe
Confidence 368999999999999999998875
No 59
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=50.31 E-value=0.91 Score=28.75 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=17.2
Q ss_pred EEEEEEEcCCCceEecceEE
Q 034299 26 VGVLKGFDQATNIILDESHE 45 (98)
Q Consensus 26 ~G~L~~~D~~~NlvL~~~~e 45 (98)
-|++.+||+-.|+.|++|..
T Consensus 34 ~~~~~~FDk~TNl~LEeA~~ 53 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAWK 53 (99)
T ss_dssp SSCEEECCTTHHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHHH
Confidence 46789999999999999953
No 60
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.12 E-value=43 Score=19.57 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=29.9
Q ss_pred cCCeEEEEECCCcEEEEEEEEEcCCC---ceEecceEEEEe
Q 034299 11 VEQQISVITNDGRNIVGVLKGFDQAT---NIILDESHERVY 48 (98)
Q Consensus 11 i~k~V~V~l~~Gr~i~G~L~~~D~~~---NlvL~~~~e~~~ 48 (98)
.|.-|..+-+||+.|-|++..+|... =+...|..++|.
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv 52 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 52 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred cCCEEEEEecCCcEEEeEEEEEecCCcEEEEEEccCCeeee
Confidence 57889999999999999999999543 344567666664
No 61
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=41.82 E-value=41 Score=25.63 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=25.9
Q ss_pred CeEEEEECCCcEEEEEEEEEcCCCceEecc
Q 034299 13 QQISVITNDGRNIVGVLKGFDQATNIILDE 42 (98)
Q Consensus 13 k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~ 42 (98)
..+.|.+.||+.+.+++.++|...+|-|=.
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlk 140 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQ 140 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEE
Confidence 478999999999999999999988876543
No 62
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=41.44 E-value=41 Score=25.42 Aligned_cols=30 Identities=40% Similarity=0.530 Sum_probs=25.9
Q ss_pred CeEEEEECCCcEEEEEEEEEcCCCceEecc
Q 034299 13 QQISVITNDGRNIVGVLKGFDQATNIILDE 42 (98)
Q Consensus 13 k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~ 42 (98)
.++.|.+.+|+.+.+++.++|...+|-|=.
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllk 117 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQ 117 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEE
Confidence 578999999999999999999888776543
No 63
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=41.07 E-value=10 Score=23.06 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=31.8
Q ss_pred hcCCeEEEEECCCcEEEEEEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEEE
Q 034299 10 LVEQQISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 72 (98)
Q Consensus 10 ~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~i 72 (98)
..+.+++++++||..+.|+.. .+...+-.|+..-.. .-+...||=+.|..+
T Consensus 23 ~~~~~l~l~l~dGe~~~g~a~------D~~~~~k~E~L~l~~------~~~~~~irLD~I~s~ 73 (86)
T 1sg5_A 23 QHHLMLTLELKDGEKLQAKAS------DLVSRKNVEYLVVEA------AGETRELRLDKITSF 73 (86)
T ss_dssp TTTTCEEEECTTTCCEEESSC------EEECCSSSCEEEEEE------TTEEEEESTTCCSEE
T ss_pred HcCCeEEEEEeCCCEEEEEEE------eeEEcCceEEEEEEc------CCCEEEEEchhhhhc
Confidence 457899999999998888543 233444445443211 123445777777777
No 64
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=38.72 E-value=41 Score=21.72 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=20.7
Q ss_pred cCCeEEEEECCCcEEEEEEEEEc
Q 034299 11 VEQQISVITNDGRNIVGVLKGFD 33 (98)
Q Consensus 11 i~k~V~V~l~~Gr~i~G~L~~~D 33 (98)
.|..|.|.-.||..|.|++.+.-
T Consensus 67 ~G~~V~V~W~DG~~y~a~f~g~~ 89 (123)
T 2xdp_A 67 EGEVVQVKWPDGKLYGAKYFGSN 89 (123)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCEEEEEcCCCCEEeEEEeeee
Confidence 57899999999999999999873
No 65
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=37.11 E-value=31 Score=24.93 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=17.9
Q ss_pred CcEEEEEEEEEcCCCceEecc
Q 034299 22 GRNIVGVLKGFDQATNIILDE 42 (98)
Q Consensus 22 Gr~i~G~L~~~D~~~NlvL~~ 42 (98)
+..+.|.+.-+|.|.|++..=
T Consensus 171 ~~~i~g~V~~iD~FGN~iTnI 191 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVILNL 191 (259)
T ss_dssp TTEEEEEEEEECTTCCEEESC
T ss_pred CCeEEEEEEEEcccCChhhcC
Confidence 456899999999999998654
No 66
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=36.55 E-value=48 Score=21.28 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=20.1
Q ss_pred cCCeEEEEECCCcEEEEEEEEE
Q 034299 11 VEQQISVITNDGRNIVGVLKGF 32 (98)
Q Consensus 11 i~k~V~V~l~~Gr~i~G~L~~~ 32 (98)
.|..|.|.-.||..|.|++.|.
T Consensus 66 ~G~~V~V~W~DG~~y~a~f~g~ 87 (118)
T 2qqr_A 66 EGEVVQVRWTDGQVYGAKFVAS 87 (118)
T ss_dssp TTCEEEEECTTSCEEEEEEEEE
T ss_pred CCCEEEEEcCCCCEeeeEEece
Confidence 5789999999999999999975
No 67
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=35.34 E-value=34 Score=24.78 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=17.8
Q ss_pred CcEEEEEEEEEcCCCceEecc
Q 034299 22 GRNIVGVLKGFDQATNIILDE 42 (98)
Q Consensus 22 Gr~i~G~L~~~D~~~NlvL~~ 42 (98)
+..+.|.+.-+|.|.|++.+=
T Consensus 167 ~~~i~g~V~~iD~FGN~iTnI 187 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVSTNI 187 (263)
T ss_dssp TTEEEEEEEEECTTCCEEEEE
T ss_pred CCeEEEEEEEEcccCChhhcC
Confidence 457899999999999998643
No 68
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=34.50 E-value=58 Score=23.85 Aligned_cols=29 Identities=41% Similarity=0.528 Sum_probs=24.9
Q ss_pred CeEEEEECCCcEEEEEEEEEcCCCceEec
Q 034299 13 QQISVITNDGRNIVGVLKGFDQATNIILD 41 (98)
Q Consensus 13 k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~ 41 (98)
.++.|.+.+|+.+.+++.++|....|-|=
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlL 116 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALL 116 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEE
Confidence 46889999999999999999988876553
No 69
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=33.87 E-value=26 Score=20.34 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=18.7
Q ss_pred CeEEEEECCCcEEEEEEEEEcC
Q 034299 13 QQISVITNDGRNIVGVLKGFDQ 34 (98)
Q Consensus 13 k~V~V~l~~Gr~i~G~L~~~D~ 34 (98)
.+++|.+.||..+.++|..-|.
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~t 29 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNK 29 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSB
T ss_pred EEEEEECCCCCEEEEEeCCCCC
Confidence 4789999999999999987664
No 70
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=33.68 E-value=58 Score=22.70 Aligned_cols=29 Identities=41% Similarity=0.528 Sum_probs=24.3
Q ss_pred CeEEEEECCCcEEEEEEEEEcCCCceEec
Q 034299 13 QQISVITNDGRNIVGVLKGFDQATNIILD 41 (98)
Q Consensus 13 k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~ 41 (98)
.++.|.+.+|+.+.+.+.+.|....|-|=
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlL 116 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALL 116 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEE
Confidence 47889999999999999999988776543
No 71
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=33.50 E-value=71 Score=18.39 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=22.8
Q ss_pred cCCeEEEEECCCcEEEEEEEEEcCC
Q 034299 11 VEQQISVITNDGRNIVGVLKGFDQA 35 (98)
Q Consensus 11 i~k~V~V~l~~Gr~i~G~L~~~D~~ 35 (98)
+|.++...-.||+.|.+++.+++..
T Consensus 9 vGd~vmArW~D~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 9 INEQVLACWSDCRFYPAKVTAVNKD 33 (67)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECTT
T ss_pred cCCEEEEEcCCCCEeeEEEEEECCC
Confidence 5888999999999999999999976
No 72
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=31.24 E-value=38 Score=25.11 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.0
Q ss_pred HhhcCCeEEEEECCCcEEEEEEEE
Q 034299 8 ESLVEQQISVITNDGRNIVGVLKG 31 (98)
Q Consensus 8 ~~~i~k~V~V~l~~Gr~i~G~L~~ 31 (98)
.-+.+++|+|..++|+.+.|++-+
T Consensus 95 ~~~~~~~v~i~t~~g~~~~Gvig~ 118 (355)
T 3kl9_A 95 MVVSSQRFKLLTRDGHEIPVISGS 118 (355)
T ss_dssp TTCSSCEEEEECTTSCEEEEEEC-
T ss_pred cccCCCEEEEEcCCCCEEEEEEeC
Confidence 456789999999999999998854
No 73
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=31.17 E-value=33 Score=23.92 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.6
Q ss_pred hhcCCeEEEEECCCcEEEEEEEE
Q 034299 9 SLVEQQISVITNDGRNIVGVLKG 31 (98)
Q Consensus 9 ~~i~k~V~V~l~~Gr~i~G~L~~ 31 (98)
..+|..|+|.+.+|+++.|+..+
T Consensus 168 G~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 168 AAVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp BCTTSEEEEEETTSCEEEEEECT
T ss_pred cCCCCEEEEECCCCCEEEEEEec
Confidence 45789999999999999998764
No 74
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=30.49 E-value=55 Score=24.93 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=25.7
Q ss_pred CeEEEEECCCcEEEEEEEEEcCCCceEecc
Q 034299 13 QQISVITNDGRNIVGVLKGFDQATNIILDE 42 (98)
Q Consensus 13 k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~ 42 (98)
..+.|.+.||+.+.+++.++|...+|-|=.
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLk 131 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLK 131 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEE
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEE
Confidence 468899999999999999999988876543
No 75
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=29.57 E-value=90 Score=21.16 Aligned_cols=28 Identities=36% Similarity=0.493 Sum_probs=24.5
Q ss_pred CeEEEEECCCcEEEEEEEEEcCCCceEe
Q 034299 13 QQISVITNDGRNIVGVLKGFDQATNIIL 40 (98)
Q Consensus 13 k~V~V~l~~Gr~i~G~L~~~D~~~NlvL 40 (98)
..+.|.+.+|+.+.+++.++|....|-|
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAl 104 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAV 104 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEE
Confidence 5788999999999999999998877655
No 76
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=29.00 E-value=93 Score=21.11 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=25.4
Q ss_pred CCeEEEEECCCcEEEEEEEEEcCCCceEec
Q 034299 12 EQQISVITNDGRNIVGVLKGFDQATNIILD 41 (98)
Q Consensus 12 ~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~ 41 (98)
...+.|.+.+|+.+.+++.++|....|-|=
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL 115 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALI 115 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEE
Confidence 357899999999999999999987776553
No 77
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=28.69 E-value=97 Score=18.72 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=23.5
Q ss_pred hcCCeEEEEECCCcEEEEEEEEEcCC
Q 034299 10 LVEQQISVITNDGRNIVGVLKGFDQA 35 (98)
Q Consensus 10 ~i~k~V~V~l~~Gr~i~G~L~~~D~~ 35 (98)
.+|.+|..+-.||+.|-+++.++++.
T Consensus 23 ~vGd~VlArW~D~~yYPAkI~sV~~~ 48 (85)
T 3qii_A 23 QINEQVLACWSDCRFYPAKVTAVNKD 48 (85)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECTT
T ss_pred ccCCEEEEEeCCCCEeeEEEEEECCC
Confidence 36889999999999999999999986
No 78
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=27.77 E-value=90 Score=22.22 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=25.2
Q ss_pred CeEEEEECCCcEEEEEEEEEcCCCceEecc
Q 034299 13 QQISVITNDGRNIVGVLKGFDQATNIILDE 42 (98)
Q Consensus 13 k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~~ 42 (98)
..+.|.+.+|+.+.+++.++|...++-|=.
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk 95 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLI 95 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEE
Confidence 468899999999999999999888776533
No 79
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=27.75 E-value=94 Score=22.30 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=24.7
Q ss_pred CeEEEEECCCcEEEEEEEEEcCCCceEec
Q 034299 13 QQISVITNDGRNIVGVLKGFDQATNIILD 41 (98)
Q Consensus 13 k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~ 41 (98)
..+.|.+.+|+.+.+++.++|....|-|=
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAll 99 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATL 99 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEE
Confidence 57899999999999999999987776553
No 80
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=26.74 E-value=80 Score=22.47 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.0
Q ss_pred CeEEEEECCCcEEEEEEEEEcCCCceEec
Q 034299 13 QQISVITNDGRNIVGVLKGFDQATNIILD 41 (98)
Q Consensus 13 k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~ 41 (98)
..+.|.+.+|+.+.+++.++|...+|-|=
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAll 92 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVV 92 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEE
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEE
Confidence 48999999999999999999988776653
No 81
>2cw5_A Bacterial fluorinating enzyme homolog; alpha and beta protein (A/B), beta barrel, structural genomics, NPPSFA; 1.94A {Thermus thermophilus}
Probab=24.59 E-value=41 Score=24.27 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=16.1
Q ss_pred EEEEEEEEcCCCceEecc
Q 034299 25 IVGVLKGFDQATNIILDE 42 (98)
Q Consensus 25 i~G~L~~~D~~~NlvL~~ 42 (98)
+.|.+.-+|.|.|++.+=
T Consensus 174 i~g~V~~iD~FGN~iTnI 191 (255)
T 2cw5_A 174 PEGEVLTFDRFGNAITTL 191 (255)
T ss_dssp SEEEEEEECTTCCEEESB
T ss_pred cEEEEEEEcccCCceecC
Confidence 899999999999998654
No 82
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.47 E-value=1.2e+02 Score=17.60 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=22.1
Q ss_pred cCCeEEEEECCCcEEEEEEEEEcCC
Q 034299 11 VEQQISVITNDGRNIVGVLKGFDQA 35 (98)
Q Consensus 11 i~k~V~V~l~~Gr~i~G~L~~~D~~ 35 (98)
+|..+.....||..|.+++.+++..
T Consensus 12 vGd~clA~wsDg~~Y~A~I~~v~~~ 36 (74)
T 2equ_A 12 AGEEVLARWTDCRYYPAKIEAINKE 36 (74)
T ss_dssp TTCEEEEECSSSSEEEEEEEEESTT
T ss_pred CCCEEEEECCCCCEEEEEEEEECCC
Confidence 4788888889999999999999864
No 83
>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Probab=22.22 E-value=1.1e+02 Score=23.30 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=23.7
Q ss_pred hHHhhcCCeEEEEECC----------C-cEEEEEEEEEcC
Q 034299 6 GLESLVEQQISVITND----------G-RNIVGVLKGFDQ 34 (98)
Q Consensus 6 ~L~~~i~k~V~V~l~~----------G-r~i~G~L~~~D~ 34 (98)
.+.+++|+++.+.+.. . |.+.|.+..+..
T Consensus 57 ~l~~llg~~~~l~i~~~~~~g~~~g~~~r~~~GiVt~~~~ 96 (491)
T 2p5z_X 57 APESVLMQDGAFSLTAPPVQGMPVQTALRTLHGVITGFKH 96 (491)
T ss_dssp CGGGTTTCEEEEEECC----------CCEEEEEEEEEEEE
T ss_pred CHHHHcCCcEEEEEEcCCcccccCCccceEEEEEEEEEEE
Confidence 5678899999999952 2 889999988874
No 84
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=22.19 E-value=18 Score=24.42 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=16.0
Q ss_pred CCeEEEEECCCcEEEEEEEEEcCC
Q 034299 12 EQQISVITNDGRNIVGVLKGFDQA 35 (98)
Q Consensus 12 ~k~V~V~l~~Gr~i~G~L~~~D~~ 35 (98)
.++|.-++++||.+...|.+.|.+
T Consensus 398 ~~~v~~Vi~~G~vv~~~l~g~~G~ 421 (426)
T 3mkv_A 398 GEHIPLVMKDGRLFVNELEGHEGH 421 (426)
T ss_dssp STTCCEEEETTEEEEECCC-----
T ss_pred CCCccEEEECCEEEECCccCCCCC
Confidence 356777899999999999988865
No 85
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=22.16 E-value=74 Score=19.48 Aligned_cols=23 Identities=13% Similarity=0.106 Sum_probs=19.3
Q ss_pred cCCeEEEEECCCcEEEEEEEEEc
Q 034299 11 VEQQISVITNDGRNIVGVLKGFD 33 (98)
Q Consensus 11 i~k~V~V~l~~Gr~i~G~L~~~D 33 (98)
-..+++|+|-||..+.++|..-|
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~ 34 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDA 34 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTS
T ss_pred CcEEEEEECCCCCEEEEEeCCCC
Confidence 34789999999999999997654
No 86
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=22.15 E-value=67 Score=19.91 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=29.2
Q ss_pred hhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEe
Q 034299 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIIL 40 (98)
Q Consensus 5 ~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL 40 (98)
.+-..|+||+|.-..+.+|.+-|.+.---..-..+-
T Consensus 33 ~~a~fYlGKrvayvyka~rviwGKVtR~HGnsGvVr 68 (95)
T 1sqr_A 33 EEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVR 68 (95)
T ss_dssp HHHHHHTTCEEEECCSTTCCEEEEEEEESSSSSCEE
T ss_pred HHHHhhcCCeEEEEECCCCEEEEEEEeeeCCCCEEE
Confidence 345679999999999999999999988766655554
No 87
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=21.91 E-value=64 Score=19.73 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=19.9
Q ss_pred CCeEEEEECCCcEEEEEEEEEcCC
Q 034299 12 EQQISVITNDGRNIVGVLKGFDQA 35 (98)
Q Consensus 12 ~k~V~V~l~~Gr~i~G~L~~~D~~ 35 (98)
-.+|.|+|-||..+..+|..-|.-
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl 46 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNS 46 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBT
T ss_pred cEEEEEECCCCCEEEEEeCCCCCH
Confidence 368899999999999999887643
No 88
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=21.89 E-value=1.3e+02 Score=18.62 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=20.1
Q ss_pred hhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceEec
Q 034299 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNIILD 41 (98)
Q Consensus 5 ~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~NlvL~ 41 (98)
+.|.+|.|++|++ .|++.++|. .-++|+
T Consensus 11 ~~L~~~~g~~Vri--------vGkV~~~~g-~~~~l~ 38 (114)
T 4gop_A 11 SMLGQYVGQTVRI--------VGKVHKVTG-NTLLMQ 38 (114)
T ss_dssp TTGGGGTTSEEEE--------EEEEEEEET-TEEEEE
T ss_pred HHHHhhCCCeEEE--------EEEEeeeCC-CEEEEE
Confidence 4789999999985 566777776 444554
No 89
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=21.79 E-value=72 Score=19.41 Aligned_cols=35 Identities=9% Similarity=0.163 Sum_probs=28.0
Q ss_pred hhHHhhcCCeEEEEECCCcEEEEEEEEEcCCCceE
Q 034299 5 PGLESLVEQQISVITNDGRNIVGVLKGFDQATNII 39 (98)
Q Consensus 5 ~~L~~~i~k~V~V~l~~Gr~i~G~L~~~D~~~Nlv 39 (98)
.+-..|+||++.-..+.|+.+-|.+.---..-.++
T Consensus 33 ~~a~fylGKrvayv~~~g~~iwGKVtr~HGnsGvV 67 (87)
T 3j21_c 33 EEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAV 67 (87)
T ss_dssp HHHGGGTTCEEEECCSSSCCEEEEEEEECCSSSCE
T ss_pred HHHHhhcCceEEEEeCCCCEEEEEEEeeeCCCCeE
Confidence 34577999999999999999999988776555555
No 90
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=21.78 E-value=54 Score=20.72 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=19.5
Q ss_pred CeEEEEECCCcEEEEEEEEEcCC
Q 034299 13 QQISVITNDGRNIVGVLKGFDQA 35 (98)
Q Consensus 13 k~V~V~l~~Gr~i~G~L~~~D~~ 35 (98)
.+|+|+|-||..+.++|..-|.-
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~tl 66 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAKL 66 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSCH
T ss_pred EEEEEECCCCCEEEEEeCCCCCH
Confidence 67899999999999999876643
No 91
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=21.70 E-value=1.1e+02 Score=20.06 Aligned_cols=14 Identities=7% Similarity=0.349 Sum_probs=12.1
Q ss_pred hhHHhhcCCeEEEE
Q 034299 5 PGLESLVEQQISVI 18 (98)
Q Consensus 5 ~~L~~~i~k~V~V~ 18 (98)
+.|.+|+||+|++.
T Consensus 36 s~L~~fvGk~VriV 49 (142)
T 2pi2_E 36 GMLAQFIDKPVCFV 49 (142)
T ss_dssp GGGGGSTTCEEEEE
T ss_pred HHHHhhCCCEEEEE
Confidence 57899999999975
No 92
>1rqp_A 5'-fluoro-5'-deoxyadenosine synthase; fluorinase, central 7 stranded beta sheets, anti-parallel BE sheets, transferase; HET: SAM; 1.80A {Streptomyces cattleya} SCOP: b.141.1.1 c.132.1.1 PDB: 1rqr_A* 2c2w_A* 2c4t_A* 2c4u_A 2c5b_A* 2c5h_A* 2cbx_A* 2cc2_A* 2v7v_A* 2v7x_A* 2v7w_A* 2v7t_A* 2v7u_A*
Probab=21.36 E-value=67 Score=23.78 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=18.2
Q ss_pred CCcEEEEEEEEEc-CCCceEecc
Q 034299 21 DGRNIVGVLKGFD-QATNIILDE 42 (98)
Q Consensus 21 ~Gr~i~G~L~~~D-~~~NlvL~~ 42 (98)
++..+.|.+.-+| .|.|++.+=
T Consensus 198 ~~~~i~g~V~~iD~~FGNviTnI 220 (299)
T 1rqp_A 198 DGEALVGVVSAIDHPFGNVWTNI 220 (299)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEE
T ss_pred cCCeEEEEEEEECCCCCCeEecC
Confidence 3567899999999 999998543
No 93
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=21.20 E-value=72 Score=23.36 Aligned_cols=23 Identities=4% Similarity=0.293 Sum_probs=18.0
Q ss_pred hhcCCeEEEE-ECCCcEEEEEEEE
Q 034299 9 SLVEQQISVI-TNDGRNIVGVLKG 31 (98)
Q Consensus 9 ~~i~k~V~V~-l~~Gr~i~G~L~~ 31 (98)
...|..|+|+ +.+|+++.|+..+
T Consensus 237 Ga~Gd~IRVrNl~SgkiV~G~V~~ 260 (278)
T 3frn_A 237 GYLGETVRAMNVESRKYVFGRVER 260 (278)
T ss_dssp BCTTCEEEEEC--CCCEEEEEEET
T ss_pred CCCCCEEEEEECCCCCEEEEEEec
Confidence 4678999999 9999999998763
No 94
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=20.79 E-value=1.8e+02 Score=20.77 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=24.6
Q ss_pred CeEEEEECCCcEEEEEEEEEcCCCceEe
Q 034299 13 QQISVITNDGRNIVGVLKGFDQATNIIL 40 (98)
Q Consensus 13 k~V~V~l~~Gr~i~G~L~~~D~~~NlvL 40 (98)
..+.|.+.+|+.+.+.+..+|....|-|
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAl 97 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIAL 97 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEE
Confidence 5789999999999999999998877655
No 95
>2q6k_A Chlorinase; complex with adenosine, biosynthetic protein; HET: ADN; 1.55A {Salinispora tropica} PDB: 2q6i_A* 2q6o_A* 2q6l_A*
Probab=20.37 E-value=56 Score=23.83 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=15.9
Q ss_pred CcEEEEEEEEEc-CCCceEecc
Q 034299 22 GRNIVGVLKGFD-QATNIILDE 42 (98)
Q Consensus 22 Gr~i~G~L~~~D-~~~NlvL~~ 42 (98)
+..+.|.+.-+| .|.|++..=
T Consensus 172 ~~~i~g~V~~iD~~FGN~iTnI 193 (283)
T 2q6k_A 172 EGGIRGEVVRIDRAFGNVWTNI 193 (283)
T ss_dssp ---CEEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEEEECCCCCCEEecC
Confidence 456899999999 999998643
No 96
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=20.30 E-value=27 Score=23.88 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=24.6
Q ss_pred EEEEEcCCCceEecceEEEEeecCCCeeEEEecEEEEcCCcEEE
Q 034299 28 VLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISI 71 (98)
Q Consensus 28 ~L~~~D~~~NlvL~~~~e~~~~~~~~~~~r~lg~v~irG~~I~~ 71 (98)
+|++|=++. .+++|..-..+++++......++.+-+||..|+-
T Consensus 41 tLKgfKryW-fv~kDt~LsyYKSkEe~~geP~~~inLrGCEVtP 83 (165)
T 4bbk_A 41 MLKACKQYW-FVFKDTSIAYFKNKELEQGEPIEKLNLRGCEIVP 83 (165)
T ss_dssp ---CCEEEE-EEEETTEEEEESSGGGTTSCCSEEEECTTCEEEE
T ss_pred ccccceeEE-EEEeCCEEEEEcCHHHhcCCCceEEecCccEEec
Confidence 455555544 5666666555554432234578889999977763
Done!