BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034300
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P63|A Chain A, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2
Loop
pdb|3P63|B Chain B, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2
Loop
Length = 96
Score = 154 bits (390), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/96 (75%), Positives = 85/96 (88%), Gaps = 1/96 (1%)
Query: 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQS 61
A YK+ LI P G + E +DQYILDAAEEAG+DLPYSCRAGACSTCAGKL+SG+VDQS
Sbjct: 1 ATYKVTLINPTGNK-TIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQS 59
Query: 62 DGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
D SFLDD+Q+EAGY+LTC++YPTSDCVI++HKEEEL
Sbjct: 60 DQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 95
>pdb|1OFF|A Chain A, 2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803
Length = 97
Score = 149 bits (376), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/97 (72%), Positives = 84/97 (86%), Gaps = 1/97 (1%)
Query: 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ 60
MA Y +KLI P+GE E +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVDQ
Sbjct: 1 MASYTVKLITPDGESS-IECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQ 59
Query: 61 SDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct: 60 SDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96
>pdb|1RFK|A Chain A, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic
Cyanobacterium Mastigocladus Laminosus
pdb|1RFK|B Chain B, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic
Cyanobacterium Mastigocladus Laminosus
Length = 98
Score = 149 bits (375), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 71/97 (73%), Positives = 83/97 (85%), Gaps = 1/97 (1%)
Query: 2 AVYKIKLIG-PNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ 60
A YK+ LI G E +DQYILDAAEEAG+DLPYSCRAGACSTCAGKL+SG+VDQ
Sbjct: 1 ATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQ 60
Query: 61 SDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SD SFLDD+Q+EAGY+LTC++YPTSDCVI++HKEEEL
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 97
>pdb|1DOX|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure
And Tertiary Fold Of [2fe-2s] Ferredoxin From
Synechocystis Sp. Pcc 6803
pdb|1DOY|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure
And Tertiary Fold Of [2fe-2s] Ferredoxin From
Synechocystis Sp. Pcc 6803
pdb|2KAJ|A Chain A, Nmr Structure Of Gallium Substituted Ferredoxin
Length = 96
Score = 147 bits (370), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/96 (71%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Query: 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQS 61
A Y +KLI P+GE E +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVDQS
Sbjct: 1 ASYTVKLITPDGESS-IECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQS 59
Query: 62 DGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
D SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct: 60 DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 95
>pdb|1FXA|A Chain A, Crystallization And Structure Determination To
2.5-Angstroms Resolution Of The Oxidized [2fe-2s]
Ferredoxin Isolated From Anabaena 7120
pdb|1FXA|B Chain B, Crystallization And Structure Determination To
2.5-Angstroms Resolution Of The Oxidized [2fe-2s]
Ferredoxin Isolated From Anabaena 7120
pdb|1QT9|A Chain A, Oxidized [2fe-2s] Ferredoxin From Anabaena Pcc7119
pdb|1CZP|A Chain A, Anabaena Pcc7119 [2fe-2s] Ferredoxin In The Reduced And
Oxixized State At 1.17 A
pdb|1CZP|B Chain B, Anabaena Pcc7119 [2fe-2s] Ferredoxin In The Reduced And
Oxixized State At 1.17 A
pdb|1EWY|C Chain C, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 98
Score = 145 bits (367), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/97 (71%), Positives = 83/97 (85%), Gaps = 1/97 (1%)
Query: 2 AVYKIKLIG-PNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ 60
A +K+ LI G +HE E +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 61 SDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|2PVG|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin And Ferredoxin:thioredoxin Reductase
pdb|2PVO|D Chain D, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 96
Score = 144 bits (364), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 68/96 (70%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Query: 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQS 61
A Y +KLI P+GE E +D YILDAAEEAG++LPYSCRAGACSTCAGK+ +GSVDQS
Sbjct: 1 ASYTVKLITPDGESS-IECSDDTYILDAAEEAGLELPYSCRAGACSTCAGKITAGSVDQS 59
Query: 62 DGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
D SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct: 60 DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 95
>pdb|1QOG|A Chain A, Ferredoxin Mutation S47a
pdb|1QOG|B Chain B, Ferredoxin Mutation S47a
Length = 98
Score = 144 bits (364), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 83/97 (85%), Gaps = 1/97 (1%)
Query: 2 AVYKIKLIG-PNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ 60
A +K+ LI G +HE E +D+YILDAAEE G DLP+SCRAGAC+TCAGKLVSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACATCAGKLVSGTVDQ 60
Query: 61 SDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|1J7B|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E94k
Length = 98
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 83/97 (85%), Gaps = 1/97 (1%)
Query: 2 AVYKIKLIG-PNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ 60
A +K+ LI G +HE E +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 61 SDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HK+E+L
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKKEDL 97
>pdb|1J7C|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E95k
Length = 98
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 83/97 (85%), Gaps = 1/97 (1%)
Query: 2 AVYKIKLIG-PNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ 60
A +K+ LI G +HE E +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 61 SDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKE++L
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEKDL 97
>pdb|1QOF|A Chain A, Ferredoxin Mutation Q70k
pdb|1QOF|B Chain B, Ferredoxin Mutation Q70k
Length = 98
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 83/97 (85%), Gaps = 1/97 (1%)
Query: 2 AVYKIKLIG-PNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ 60
A +K+ LI G +HE E +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 61 SDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SD SFLDD+++EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct: 61 SDQSFLDDDKIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|1QOB|A Chain A, Ferredoxin Mutation D62k
pdb|1QOB|B Chain B, Ferredoxin Mutation D62k
Length = 98
Score = 143 bits (360), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 2 AVYKIKLIG-PNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ 60
A +K+ LI G +HE E +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 61 SDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
S SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct: 61 SKQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|1J7A|A Chain A, Structure Of The Anabaena Ferredoxin D68k Mutant
Length = 98
Score = 143 bits (360), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 2 AVYKIKLIG-PNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ 60
A +K+ LI G +HE E +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 61 SDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SD SFLD +Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct: 61 SDQSFLDKDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|1QOA|A Chain A, Ferredoxin Mutation C49s
pdb|1QOA|B Chain B, Ferredoxin Mutation C49s
Length = 98
Score = 143 bits (360), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 2 AVYKIKLIG-PNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ 60
A +K+ LI G +HE E +D+YILDAAEE G DLP+SCRAGACST AGKLVSG+VDQ
Sbjct: 1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTSAGKLVSGTVDQ 60
Query: 61 SDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97
>pdb|1PFD|A Chain A, The Solution Structure Of High Plant Parsley [2fe-2s]
Ferredoxin, Nmr, 18 Structures
Length = 96
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 82/96 (85%), Gaps = 1/96 (1%)
Query: 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQS 61
A Y +KLI P+GE EF+ +D Y+LD AEE G+D+PYSCRAG+CS+CAGK+VSGS+DQS
Sbjct: 1 ATYNVKLITPDGEV-EFKCDDDVYVLDQAEEEGIDIPYSCRAGSCSSCAGKVVSGSIDQS 59
Query: 62 DGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
D SFLDD QM+AGY+LTC +YPTSD VI++HKEEE+
Sbjct: 60 DQSFLDDEQMDAGYVLTCHAYPTSDVVIETHKEEEI 95
>pdb|1ROE|A Chain A, Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus
Elongatus
pdb|2CJN|A Chain A, Structure Of Ferredoxin, Nmr, Minimized Average
Structure
pdb|2CJO|A Chain A, Structure Of Ferredoxin, Nmr, 10 Structures
Length = 97
Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 78/96 (81%)
Query: 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQS 61
A YK+ L+ P+G E + ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQS
Sbjct: 1 ATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQS 60
Query: 62 DGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
D SFLDD+Q+E G++LTC++YP SDC I +++EEEL
Sbjct: 61 DQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 96
>pdb|3AB5|A Chain A, Crystal Structure Of The 2fe 2s Ferredoxin From
Cyanidioschyzon Merolae
pdb|3AB5|B Chain B, Crystal Structure Of The 2fe 2s Ferredoxin From
Cyanidioschyzon Merolae
Length = 97
Score = 135 bits (339), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 79/96 (82%), Gaps = 1/96 (1%)
Query: 3 VYKIKLIGPN-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQS 61
+YKI+L+ G + + DQYILDAAEE GVDLPYSCRAGACSTCAGKLV GSVDQS
Sbjct: 1 MYKIQLVNQKEGIDVTIQCAGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQS 60
Query: 62 DGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
D SFLD++Q+ G++LTC++YPTSDCVIQ+H+EE L
Sbjct: 61 DQSFLDEDQISKGFILTCVAYPTSDCVIQTHQEEAL 96
>pdb|4FXC|A Chain A, Tertiary Structure Of [2fe-2s] Ferredoxin From Spirulina
Platensis Refined At 2.5 Angstroms Resolution:
Structural Comparisons Of Plant-Type Ferredoxins And An
Electrostatic Potential Analysis
Length = 98
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
Query: 2 AVYKIKLIG-PNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ 60
A YK+ LI G + +D YILDAAEEAG+DLPYSCRAGACSTCAG + SG++DQ
Sbjct: 1 ATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQ 60
Query: 61 SDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SD SFLDD+Q+EAGY+LTC++YPTSDC I++H+EE L
Sbjct: 61 SDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGL 97
>pdb|3B2G|A Chain A, Leptolyngbya Boryana Ferredoxin
pdb|3B2G|B Chain B, Leptolyngbya Boryana Ferredoxin
Length = 98
Score = 132 bits (333), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/95 (64%), Positives = 78/95 (82%), Gaps = 1/95 (1%)
Query: 4 YKIKLIGPN-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSD 62
+K+ LI G E +D+YILDAAEE G+DLPYSCRAGACSTCAGK+ +G+VDQSD
Sbjct: 3 FKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSD 62
Query: 63 GSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SFLDD+Q++AGY+LTC++YPTSDC I +H+EE+L
Sbjct: 63 QSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 97
>pdb|1GAQ|B Chain B, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|3B2F|A Chain A, Maize Ferredoxin 1
pdb|3B2F|B Chain B, Maize Ferredoxin 1
Length = 98
Score = 132 bits (332), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/96 (66%), Positives = 78/96 (81%), Gaps = 1/96 (1%)
Query: 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQS 61
A Y +KLI P GE E + +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSGSVDQS
Sbjct: 1 ATYNVKLITPEGEV-ELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQS 59
Query: 62 DGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
D S+LDD Q+ G++LTC +YPTSD VI++HKEEEL
Sbjct: 60 DQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEEL 95
>pdb|3AV8|A Chain A, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I
From Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|B Chain B, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I
From Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|C Chain C, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I
From Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|D Chain D, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I
From Aphanothece Sacrum At 1.46 A Resolution
Length = 97
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/97 (65%), Positives = 79/97 (81%), Gaps = 2/97 (2%)
Query: 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSV-DQ 60
A YK+ L P+G+ + +D+YILD AEE G+DLPYSCRAGACSTCAGKLVSG DQ
Sbjct: 1 ASYKVTLKTPDGD-NVITVPDDEYILDVAEEQGLDLPYSCRAGACSTCAGKLVSGPAPDQ 59
Query: 61 SDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SD SFLDD+Q++AGY+LTC++YPT DCVI++HKEE L
Sbjct: 60 SDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96
>pdb|1FXI|A Chain A, Structure Of The [2fe-2s] Ferredoxin I From The
Blue-Green Alga Aphanothece Sacrum At 2.2 Angstroms
Resolution
pdb|1FXI|B Chain B, Structure Of The [2fe-2s] Ferredoxin I From The
Blue-Green Alga Aphanothece Sacrum At 2.2 Angstroms
Resolution
pdb|1FXI|C Chain C, Structure Of The [2fe-2s] Ferredoxin I From The
Blue-Green Alga Aphanothece Sacrum At 2.2 Angstroms
Resolution
pdb|1FXI|D Chain D, Structure Of The [2fe-2s] Ferredoxin I From The
Blue-Green Alga Aphanothece Sacrum At 2.2 Angstroms
Resolution
Length = 96
Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 76/96 (79%), Gaps = 1/96 (1%)
Query: 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQS 61
A YK+ L P+G+ + +D+YILD AEE G+DLPYSCRAGACSTCAGKLVSG
Sbjct: 1 ASYKVTLKTPDGD-NVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDE 59
Query: 62 DGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
D SFLDD+Q++AGY+LTC++YPT DCVI++HKEE L
Sbjct: 60 DQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 95
>pdb|1AWD|A Chain A, Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fusca
Length = 94
Score = 127 bits (319), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDG 63
YK+ L P+GEE E ED YILDAAEEAG+DLPYSCRAGACS+CAGK+ SG VDQSD
Sbjct: 1 YKVTLKTPSGEET-IECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQ 59
Query: 64 SFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SFLDD QM G++LTC++YPTSD I +H+E L
Sbjct: 60 SFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93
>pdb|1A70|A Chain A, Spinach Ferredoxin
Length = 97
Score = 125 bits (314), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
Query: 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDG 63
YK+ L+ P G EF+ +D YILDAAEE G+DLPYSCRAG+CS+CAGKL +GS++Q D
Sbjct: 3 YKVTLVTPTGN-VEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQ 61
Query: 64 SFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SFLDD+Q++ G++LTC +YP SD I++HK+EEL
Sbjct: 62 SFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEEL 95
>pdb|1FRR|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin I From
Equisetum Arvense At 1.8 Angstroms Resolution
pdb|1FRR|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin I From
Equisetum Arvense At 1.8 Angstroms Resolution
Length = 95
Score = 125 bits (313), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/94 (65%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDG 63
YK L P+GE + E ILDAAEEAG DLP+SCRAGACS+C GK+VSGSVD+S+G
Sbjct: 2 YKTVLKTPSGE-FTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEG 60
Query: 64 SFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SFLDD QME G++LTCI+ P SD VI++HKEEEL
Sbjct: 61 SFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94
>pdb|1IUE|A Chain A, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
pdb|1IUE|B Chain B, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
Length = 98
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQS 61
A Y I L +GE+ + E ED+YILDA+E V+LPYSCR G+CSTCA KLV G VD
Sbjct: 1 AFYNITLRTNDGEK-KIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDND 59
Query: 62 DGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
D S+LD+ Q++ Y+L C YP SDCVI++HKE+EL
Sbjct: 60 DQSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDEL 95
>pdb|1WRI|A Chain A, Crystal Structure Of Ferredoxin Isoform Ii From E.
Arvense
Length = 93
Score = 108 bits (270), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 71/94 (75%), Gaps = 2/94 (2%)
Query: 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDG 63
YK+ L P+G+ F+ + + ++D E DLP SC+AGACSTC GK+VSG+VDQS+G
Sbjct: 2 YKVTLKTPDGD-ITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEG 59
Query: 64 SFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 97
SFLDD Q+E GY+LTCI+ P SD VI++HKE+EL
Sbjct: 60 SFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93
>pdb|1FRD|A Chain A, Molecular Structure Of The Oxidized, Recombinant,
Heterocyst (2fe-2s) Ferredoxin From Anabaena 7120
Determined To 1.7 Angstroms Resolution
Length = 98
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 2 AVYKIKLIGPNGE-EHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ 60
A Y+++LI + + E E+ ILD AEE G++LP+SC +G+CS+C GK+V G VDQ
Sbjct: 1 ASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQ 60
Query: 61 SDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKE 94
SD FLDD QM G+ L C++YP S+C I++H+E
Sbjct: 61 SDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQE 94
>pdb|1E10|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
Length = 128
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 10 GPNGEEH-EFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDD 68
G +GE++ E E +YIL+AAE G D P+SCRAGAC+ CA + G +D L D
Sbjct: 31 GLDGEDYGTMEVAEGEYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSD 90
Query: 69 NQM-EAGYLLTCISYPTSDCV 88
++ E LTCI P +D V
Sbjct: 91 EEVEEKDVRLTCIGSPAADEV 111
>pdb|1E0Z|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
Length = 128
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 10 GPNGEEH-EFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDD 68
G +GE++ E E +YIL+AAE G D P+SCRAGAC+ CA + G +D L D
Sbjct: 31 GLDGEDYGTMEVAEGEYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSD 90
Query: 69 NQM-EAGYLLTCISYPTSDCV 88
++ E LTCI P +D V
Sbjct: 91 EEVEEKDVRLTCIGSPAADEV 111
>pdb|1DOI|A Chain A, 2fe-2s Ferredoxin From Haloarcula Marismortui
Length = 128
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 18 FEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQME-AGYL 76
E E +YIL+AAE G D P+SCRAGAC+ CA ++ G +D L D ++E
Sbjct: 40 LEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVR 99
Query: 77 LTCISYPTSDCV 88
LTCI P +D V
Sbjct: 100 LTCIGSPDADEV 111
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 28 DAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDD----NQMEAGYLLTCISYP 83
DAA +++P CR G C TC SG+ D + ++++D + + GY+L C P
Sbjct: 28 DAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRP 87
Query: 84 TSDCVIQSHKEEELC 98
TSD V Q E+C
Sbjct: 88 TSDAVFQIQASSEVC 102
>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
Length = 631
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR-AGACSTCAGKLVSGSVD 59
MA YK+ L P ++ E E+ +++A AG+++ C AG C C ++V G
Sbjct: 1 MAEYKV-LFKP--DQKEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKR 57
Query: 60 QSDGSFLDDNQMEAGYLLTCISYPTSDCVIQ 90
L ++ GY+L C +YP SD +I+
Sbjct: 58 VESYGKLKQEEIAQGYVLACQTYPESDLIIE 88
>pdb|1JQ4|A Chain A, [2fe-2s] Domain Of Methane Monooxygenase Reductase From
Methylococcus Capsulatus (Bath)
Length = 98
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSD 62
V+ I + +GE FE + D+ ++ AA + L SCR G C+TC G D
Sbjct: 4 VHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKG 63
Query: 63 GSF--LDDNQMEAGYLLTCISYPTSDCVIQ 90
S L + E G +L C +YP +D I+
Sbjct: 64 CSVQALPPEEEEEGLVLLCRTYPKTDLEIE 93
>pdb|2PIA|A Chain A, Phthalate Dioxygenase Reductase: A Modular Structure For
Electron Transfer From Pyridine Nucleotides To [2fe-2s]
Length = 321
Score = 44.7 bits (104), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 18 FEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLL 77
FE ++ IL+ +A V +P SC +G C +C L SG D D DD + ++
Sbjct: 249 FEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRDMVLRDDEK--GTQIM 306
Query: 78 TCISYPTS 85
C+S S
Sbjct: 307 VCVSRAKS 314
>pdb|2WLB|A Chain A, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
pdb|2WLB|B Chain B, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
Length = 103
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAG-ACSTC 49
K+ + P G E E E ILD A +DL +C ACSTC
Sbjct: 5 KVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTC 50
>pdb|1E9M|A Chain A, Ferredoxin Vi From Rhodobacter Capsulatus
pdb|1UWM|A Chain A, Reduced Ferredoxin 6 From Rhodobacter Capsulatus
Length = 106
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD-LPYSC-RAGACSTCAGKLVSGSVDQSD 62
KI I NG HE EA+ +++AA + GV + C A ACSTC + VD+
Sbjct: 2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLP 61
Query: 63 GSFLDDNQM 71
+ + M
Sbjct: 62 KALPTETDM 70
>pdb|1I7H|A Chain A, Crystal Sturcuture Of Fdx
pdb|1I7H|B Chain B, Crystal Sturcuture Of Fdx
pdb|1I7H|C Chain C, Crystal Sturcuture Of Fdx
Length = 111
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 18 FEAQEDQYILDAAEEAGVDLPYSC-RAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYL 76
EA + ILDAA G+++ ++C ++ AC+TC + G + S +D+ ++ +
Sbjct: 19 LEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWG 78
Query: 77 L 77
L
Sbjct: 79 L 79
>pdb|3KL9|A Chain A, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|B Chain B, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|C Chain C, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|D Chain D, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|E Chain E, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|F Chain F, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|G Chain G, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|H Chain H, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|I Chain I, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|J Chain J, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|K Chain K, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|L Chain L, Crystal Structure Of Pepa From Streptococcus Pneumoniae
Length = 355
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 25 YILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSV 58
++L AEEAG+ Y C G A L +G V
Sbjct: 273 FLLTTAEEAGIKYQYYCGKGGTDAGAAHLKNGGV 306
>pdb|2Y5C|A Chain A, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
pdb|2Y5C|B Chain B, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
Length = 109
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAG-ACSTC 49
V + + +G+ + +L A+ GVDL +C A ACSTC
Sbjct: 5 VVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTC 52
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 8 LIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAG 51
+IG NG E E LD E+A D + AG C C G
Sbjct: 280 VIGANGVERIIEID-----LDKDEKAQFDKSVASVAGLCEACIG 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,030,459
Number of Sequences: 62578
Number of extensions: 103692
Number of successful extensions: 202
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 42
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)