Query 034300
Match_columns 98
No_of_seqs 224 out of 1145
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 11:58:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02008 fdx_plant ferredoxin 100.0 6.7E-31 1.5E-35 160.6 12.1 96 3-98 2-97 (97)
2 CHL00134 petF ferredoxin; Vali 100.0 9.6E-31 2.1E-35 160.5 11.8 97 1-98 1-99 (99)
3 PLN03136 Ferredoxin; Provision 100.0 1.2E-28 2.5E-33 160.4 11.3 96 1-97 52-147 (148)
4 PTZ00038 ferredoxin; Provision 100.0 1.3E-27 2.8E-32 160.7 11.2 96 2-98 94-189 (191)
5 PRK10713 2Fe-2S ferredoxin Yfa 99.9 1.2E-25 2.6E-30 134.2 9.7 82 4-91 2-84 (84)
6 PLN02593 adrenodoxin-like ferr 99.9 2.5E-24 5.4E-29 135.6 6.8 93 4-96 1-105 (117)
7 PRK07609 CDP-6-deoxy-delta-3,4 99.9 3E-23 6.6E-28 149.5 11.1 91 3-96 2-94 (339)
8 COG0633 Fdx Ferredoxin [Energy 99.9 9.5E-24 2.1E-28 130.1 6.9 91 6-96 4-100 (102)
9 cd00207 fer2 2Fe-2S iron-sulfu 99.9 5.1E-23 1.1E-27 121.6 9.0 80 11-90 5-84 (84)
10 PRK11872 antC anthranilate dio 99.9 7.2E-23 1.6E-27 148.1 11.6 91 4-94 3-95 (340)
11 TIGR01941 nqrF NADH:ubiquinone 99.9 1.5E-22 3.1E-27 149.4 9.5 93 1-93 27-122 (405)
12 TIGR02007 fdx_isc ferredoxin, 99.9 3E-22 6.6E-27 124.8 9.1 84 10-95 12-103 (110)
13 PTZ00490 Ferredoxin superfamil 99.9 1.8E-22 3.8E-27 130.7 7.8 94 3-96 35-140 (143)
14 PRK05713 hypothetical protein; 99.9 4.3E-22 9.4E-27 142.5 9.8 80 11-92 6-85 (312)
15 PF00111 Fer2: 2Fe-2S iron-sul 99.9 1.2E-21 2.5E-26 114.8 7.4 74 10-84 2-78 (78)
16 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 2.3E-21 4.9E-26 140.4 10.5 87 4-91 263-351 (352)
17 PRK10684 HCP oxidoreductase, N 99.9 2.8E-21 6E-26 139.2 9.6 84 4-90 249-332 (332)
18 PRK05464 Na(+)-translocating N 99.8 4E-20 8.7E-25 136.6 9.4 78 16-93 46-126 (409)
19 COG2871 NqrF Na+-transporting 99.8 9.1E-19 2E-23 124.2 6.1 81 14-94 45-128 (410)
20 COG3894 Uncharacterized metal- 99.7 2.9E-17 6.2E-22 122.9 5.5 90 4-97 2-92 (614)
21 KOG3309 Ferredoxin [Energy pro 99.6 5.3E-15 1.1E-19 95.8 6.1 96 3-98 43-149 (159)
22 PRK07569 bidirectional hydroge 99.6 4.6E-15 1E-19 102.9 6.3 73 1-94 1-79 (234)
23 PF13510 Fer2_4: 2Fe-2S iron-s 99.5 1.3E-14 2.8E-19 86.1 4.1 69 3-93 3-81 (82)
24 PRK08166 NADH dehydrogenase su 99.4 6.9E-13 1.5E-17 105.5 6.2 75 4-94 2-82 (847)
25 PRK06259 succinate dehydrogena 99.3 1.5E-11 3.2E-16 92.7 7.3 75 1-93 1-88 (486)
26 PTZ00305 NADH:ubiquinone oxido 99.3 1.3E-11 2.8E-16 87.8 6.1 67 10-94 72-145 (297)
27 PRK12814 putative NADPH-depend 99.2 3.8E-11 8.3E-16 93.5 6.5 73 1-94 1-79 (652)
28 PRK09130 NADH dehydrogenase su 99.1 9.5E-11 2.1E-15 91.8 6.0 71 4-94 2-78 (687)
29 COG1034 NuoG NADH dehydrogenas 99.1 1.2E-10 2.7E-15 91.0 6.0 71 3-94 1-77 (693)
30 PRK08493 NADH dehydrogenase su 99.0 5.8E-10 1.3E-14 88.8 6.4 68 4-94 2-75 (819)
31 TIGR01973 NuoG NADH-quinone ox 99.0 5.9E-10 1.3E-14 86.1 5.3 65 12-94 4-75 (603)
32 PRK13552 frdB fumarate reducta 99.0 1.1E-09 2.3E-14 76.5 5.5 52 15-84 25-82 (239)
33 PRK09129 NADH dehydrogenase su 99.0 8.9E-10 1.9E-14 87.2 5.8 70 4-94 2-77 (776)
34 PRK08640 sdhB succinate dehydr 98.9 1.5E-09 3.3E-14 76.1 5.0 59 14-90 23-97 (249)
35 PRK07860 NADH dehydrogenase su 98.9 2.1E-09 4.5E-14 85.5 6.0 69 3-92 4-78 (797)
36 PRK11433 aldehyde oxidoreducta 98.9 7.1E-09 1.5E-13 71.3 7.8 52 4-57 50-103 (217)
37 PF13085 Fer2_3: 2Fe-2S iron-s 98.9 1.8E-09 3.9E-14 67.3 3.8 53 15-85 20-78 (110)
38 PRK12386 fumarate reductase ir 98.9 6.2E-09 1.3E-13 73.2 5.9 53 14-84 20-78 (251)
39 PRK12385 fumarate reductase ir 98.8 4.1E-09 8.8E-14 73.8 4.2 73 1-91 4-93 (244)
40 PRK09908 xanthine dehydrogenas 98.8 1.2E-08 2.6E-13 67.2 5.8 52 4-57 7-59 (159)
41 PRK12577 succinate dehydrogena 98.8 1.8E-08 4E-13 73.2 7.3 40 14-53 19-64 (329)
42 PRK07570 succinate dehydrogena 98.8 1.2E-08 2.7E-13 71.6 4.7 57 16-84 22-89 (250)
43 COG3383 Uncharacterized anaero 98.7 2.8E-08 6.1E-13 78.2 6.3 73 1-94 1-79 (978)
44 PRK12575 succinate dehydrogena 98.7 3.6E-08 7.8E-13 68.7 5.8 57 16-90 25-90 (235)
45 PRK12576 succinate dehydrogena 98.7 9.6E-08 2.1E-12 68.1 7.1 54 3-57 8-73 (279)
46 TIGR03193 4hydroxCoAred 4-hydr 98.6 7.1E-08 1.5E-12 62.9 5.2 47 10-57 5-53 (148)
47 COG0479 FrdB Succinate dehydro 98.6 8.3E-08 1.8E-12 66.8 5.8 53 15-85 21-79 (234)
48 PLN00129 succinate dehydrogena 98.6 1.1E-07 2.5E-12 67.6 5.3 51 16-84 64-121 (276)
49 TIGR00384 dhsB succinate dehyd 98.6 3.6E-08 7.9E-13 67.9 2.7 43 14-57 15-63 (220)
50 COG2080 CoxS Aerobic-type carb 98.6 3.1E-07 6.6E-12 60.3 6.5 53 2-58 2-56 (156)
51 PRK05950 sdhB succinate dehydr 98.5 1.8E-07 3.8E-12 64.9 4.7 42 15-57 19-67 (232)
52 TIGR03198 pucE xanthine dehydr 98.4 5.8E-07 1.3E-11 58.9 5.3 50 6-57 4-55 (151)
53 TIGR02963 xanthine_xdhA xanthi 98.1 5.4E-06 1.2E-10 62.9 4.4 44 10-53 4-50 (467)
54 PRK09800 putative hypoxanthine 98.0 1.7E-05 3.6E-10 64.7 6.3 50 6-57 3-54 (956)
55 KOG2282 NADH-ubiquinone oxidor 97.9 1.7E-05 3.7E-10 60.7 4.8 66 11-94 37-108 (708)
56 TIGR03313 Se_sel_red_Mo probab 97.7 6.4E-05 1.4E-09 61.4 5.1 46 11-57 3-50 (951)
57 TIGR03311 Se_dep_Molyb_1 selen 97.7 8E-05 1.7E-09 60.1 5.1 43 12-57 6-50 (848)
58 PLN00192 aldehyde oxidase 97.7 7.7E-05 1.7E-09 62.7 5.1 49 5-54 5-56 (1344)
59 TIGR02969 mam_aldehyde_ox alde 97.5 0.00012 2.6E-09 61.6 4.5 48 6-54 3-53 (1330)
60 TIGR01372 soxA sarcosine oxida 96.9 0.0026 5.6E-08 52.3 6.0 73 5-93 12-95 (985)
61 COG4630 XdhA Xanthine dehydrog 96.8 0.0027 5.9E-08 47.4 5.1 50 3-53 6-58 (493)
62 KOG3049 Succinate dehydrogenas 96.7 0.0023 5E-08 44.5 3.8 52 16-85 68-126 (288)
63 KOG0430 Xanthine dehydrogenase 96.2 0.0065 1.4E-07 50.5 4.3 46 10-55 6-54 (1257)
64 cd01760 RBD Ubiquitin-like dom 95.4 0.035 7.7E-07 32.0 4.0 27 6-32 2-28 (72)
65 PLN02906 xanthine dehydrogenas 94.8 0.031 6.6E-07 47.6 3.5 32 23-54 1-33 (1319)
66 smart00455 RBD Raf-like Ras-bi 94.5 0.11 2.4E-06 29.7 4.3 26 7-32 3-28 (70)
67 PRK08364 sulfur carrier protei 94.2 0.13 2.8E-06 29.2 4.2 34 1-37 2-37 (70)
68 cd01816 Raf_RBD Ubiquitin doma 93.8 0.12 2.6E-06 29.9 3.4 28 6-33 2-29 (74)
69 PF02196 RBD: Raf-like Ras-bin 93.6 0.16 3.4E-06 29.0 3.8 45 6-57 3-49 (71)
70 PRK07440 hypothetical protein; 93.4 0.22 4.8E-06 28.3 4.2 30 3-37 4-33 (70)
71 PRK00054 dihydroorotate dehydr 93.0 0.1 2.2E-06 36.2 2.8 30 26-55 196-231 (250)
72 PRK06083 sulfur carrier protei 92.5 0.34 7.5E-06 28.7 4.2 31 1-36 16-46 (84)
73 PRK05659 sulfur carrier protei 92.5 0.25 5.5E-06 27.3 3.5 28 5-37 2-29 (66)
74 cd06218 DHOD_e_trans FAD/NAD b 91.9 0.27 5.9E-06 34.1 3.8 31 25-55 194-230 (246)
75 PRK01777 hypothetical protein; 91.6 0.71 1.5E-05 28.0 5.0 38 1-38 1-41 (95)
76 cd01817 RGS12_RBD Ubiquitin do 91.0 0.52 1.1E-05 27.3 3.7 41 8-57 4-48 (73)
77 PF02824 TGS: TGS domain; Int 90.4 0.55 1.2E-05 25.8 3.4 33 7-41 2-34 (60)
78 cd06219 DHOD_e_trans_like1 FAD 89.9 0.3 6.5E-06 33.9 2.5 28 26-53 195-228 (248)
79 PRK05863 sulfur carrier protei 89.3 0.91 2E-05 25.2 3.8 29 5-38 2-30 (65)
80 cd01818 TIAM1_RBD Ubiquitin do 89.0 0.84 1.8E-05 26.6 3.5 24 9-32 5-28 (77)
81 cd06221 sulfite_reductase_like 88.8 0.25 5.4E-06 34.4 1.5 28 25-52 204-240 (253)
82 cd06220 DHOD_e_trans_like2 FAD 88.3 0.69 1.5E-05 31.6 3.4 30 25-54 181-216 (233)
83 PF10418 DHODB_Fe-S_bind: Iron 87.9 0.26 5.5E-06 25.2 0.8 18 39-56 4-21 (40)
84 PRK08345 cytochrome-c3 hydroge 87.9 0.29 6.4E-06 34.8 1.4 32 25-56 226-266 (289)
85 COG2104 ThiS Sulfur transfer p 86.8 1.7 3.7E-05 24.7 3.9 29 4-37 3-31 (68)
86 PRK06944 sulfur carrier protei 86.6 1.3 2.8E-05 24.2 3.3 27 5-36 2-28 (65)
87 PRK06222 ferredoxin-NADP(+) re 86.0 0.54 1.2E-05 33.3 1.9 28 26-53 196-229 (281)
88 PF03990 DUF348: Domain of unk 85.6 2.1 4.5E-05 21.9 3.5 31 6-38 2-32 (43)
89 PRK08053 sulfur carrier protei 85.5 2.1 4.5E-05 23.8 3.8 28 5-37 2-29 (66)
90 PF03658 Ub-RnfH: RnfH family 85.5 1.6 3.4E-05 26.0 3.4 33 4-36 3-36 (84)
91 PRK05802 hypothetical protein; 84.3 0.87 1.9E-05 33.1 2.3 28 26-53 269-304 (320)
92 cd01791 Ubl5 UBL5 ubiquitin-li 83.0 3.8 8.1E-05 23.4 4.2 26 4-29 2-27 (73)
93 PRK12778 putative bifunctional 80.7 1.5 3.3E-05 35.3 2.7 28 26-53 196-229 (752)
94 PRK06437 hypothetical protein; 80.7 4.9 0.00011 22.5 4.1 24 13-36 10-33 (67)
95 PF11470 TUG-UBL1: GLUT4 regul 80.6 2.6 5.7E-05 23.7 2.9 24 10-33 3-26 (65)
96 TIGR02911 sulfite_red_B sulfit 79.4 0.74 1.6E-05 32.3 0.5 27 26-52 205-240 (261)
97 PRK06549 acetyl-CoA carboxylas 79.2 2 4.4E-05 27.4 2.4 19 1-22 1-20 (130)
98 PRK07696 sulfur carrier protei 76.4 6 0.00013 22.1 3.6 28 5-37 2-30 (67)
99 TIGR01683 thiS thiamine biosyn 75.8 4.6 0.0001 22.1 3.0 23 12-36 4-26 (64)
100 PF10531 SLBB: SLBB domain; I 75.6 6.4 0.00014 21.2 3.5 24 16-39 12-35 (59)
101 PRK08221 anaerobic sulfite red 74.3 1.2 2.5E-05 31.3 0.3 27 26-52 207-242 (263)
102 cd06192 DHOD_e_trans_like FAD/ 74.0 1.7 3.8E-05 29.8 1.1 16 38-53 213-228 (243)
103 cd01792 ISG15_repeat1 ISG15 ub 74.0 8.9 0.00019 21.9 4.0 26 4-29 3-28 (80)
104 PRK12775 putative trifunctiona 73.8 4.3 9.4E-05 34.1 3.5 28 26-53 196-229 (1006)
105 cd00565 ThiS ThiaminS ubiquiti 73.8 7.1 0.00015 21.4 3.4 23 12-36 5-27 (65)
106 PRK10972 Z-ring-associated pro 73.5 3 6.5E-05 25.9 2.0 31 1-32 1-33 (109)
107 cd01790 Herp_N Homocysteine-re 73.4 11 0.00023 22.0 4.2 28 4-31 2-31 (79)
108 cd01805 RAD23_N Ubiquitin-like 71.4 10 0.00022 21.2 3.8 25 5-29 2-26 (77)
109 cd01809 Scythe_N Ubiquitin-lik 71.0 10 0.00022 20.6 3.7 26 5-30 2-27 (72)
110 cd01668 TGS_RelA_SpoT TGS_RelA 70.5 6.2 0.00013 20.7 2.6 27 9-37 4-30 (60)
111 cd01803 Ubiquitin Ubiquitin. U 70.0 11 0.00024 20.7 3.8 26 5-30 2-27 (76)
112 PTZ00044 ubiquitin; Provisiona 69.4 12 0.00025 20.9 3.8 26 5-30 2-27 (76)
113 cd01810 ISG15_repeat2 ISG15 ub 69.1 14 0.0003 20.6 4.0 23 7-29 2-24 (74)
114 cd01807 GDX_N ubiquitin-like d 69.1 12 0.00026 20.9 3.7 26 5-30 2-27 (74)
115 COG4070 Predicted peptidyl-pro 68.9 7.3 0.00016 29.8 3.4 26 12-39 7-32 (512)
116 PRK12779 putative bifunctional 67.5 5.2 0.00011 33.4 2.7 28 26-53 862-895 (944)
117 cd01806 Nedd8 Nebb8-like ubiq 67.3 14 0.0003 20.3 3.8 26 5-30 2-27 (76)
118 cd01804 midnolin_N Ubiquitin-l 66.8 17 0.00038 20.6 4.2 25 5-29 3-27 (78)
119 PRK06567 putative bifunctional 65.4 3.5 7.6E-05 34.8 1.3 19 38-57 971-990 (1028)
120 cd01787 GRB7_RA RA (RAS-associ 64.4 23 0.00049 21.1 4.3 29 4-32 3-31 (85)
121 KOG0003 Ubiquitin/60s ribosoma 63.7 16 0.00034 22.9 3.7 26 1-29 1-26 (128)
122 cd01813 UBP_N UBP ubiquitin pr 63.7 12 0.00026 21.2 3.0 24 5-29 2-25 (74)
123 PF01476 LysM: LysM domain; I 63.5 8.3 0.00018 19.0 2.1 20 19-38 2-21 (44)
124 cd01802 AN1_N ubiquitin-like d 62.9 31 0.00067 20.9 4.9 26 4-29 28-53 (103)
125 PRK00969 hypothetical protein; 62.9 13 0.00029 29.0 3.9 34 4-42 2-35 (508)
126 PF04225 OapA: Opacity-associa 62.1 8.9 0.00019 22.5 2.3 22 16-37 3-24 (85)
127 PF14451 Ub-Mut7C: Mut7-C ubiq 61.7 25 0.00054 20.5 4.2 25 15-39 24-48 (81)
128 cd01794 DC_UbP_C dendritic cel 60.6 26 0.00056 19.6 4.0 20 10-29 5-24 (70)
129 COG3061 OapA Cell envelope opa 59.9 11 0.00023 26.5 2.7 26 13-38 157-182 (242)
130 PLN02799 Molybdopterin synthas 59.4 19 0.00042 20.4 3.5 33 1-33 1-38 (82)
131 COG3027 zapA Cell division pro 58.4 20 0.00043 22.1 3.5 30 1-33 1-32 (105)
132 cd01763 Sumo Small ubiquitin-r 56.9 37 0.0008 19.7 4.9 35 3-37 11-49 (87)
133 cd01995 ExsB ExsB is a transcr 56.7 8.8 0.00019 24.7 1.8 29 23-51 126-159 (169)
134 PF11543 UN_NPL4: Nuclear pore 55.9 24 0.00053 20.4 3.5 29 3-32 4-32 (80)
135 cd00118 LysM Lysin domain, fou 54.9 14 0.00031 17.1 2.1 21 17-37 2-22 (46)
136 COG1828 PurS Phosphoribosylfor 54.0 22 0.00048 21.0 3.0 32 1-36 1-32 (83)
137 cd01812 BAG1_N Ubiquitin-like 54.0 22 0.00048 19.3 3.0 26 5-31 2-27 (71)
138 TIGR02899 spore_safA spore coa 53.3 9.1 0.0002 18.4 1.2 19 20-38 1-19 (44)
139 PRK11092 bifunctional (p)ppGpp 52.5 19 0.0004 29.3 3.3 36 5-42 387-422 (702)
140 PF11976 Rad60-SLD: Ubiquitin- 52.3 31 0.00067 18.8 3.5 34 5-38 2-39 (72)
141 PRK06488 sulfur carrier protei 50.7 31 0.00068 18.7 3.3 27 5-37 2-28 (65)
142 cd01767 UBX UBX (ubiquitin reg 50.7 44 0.00095 18.7 4.3 26 4-29 3-28 (77)
143 cd01798 parkin_N amino-termina 50.2 33 0.00071 18.8 3.3 22 8-29 3-24 (70)
144 cd01796 DDI1_N DNA damage indu 50.0 30 0.00065 19.2 3.1 23 7-29 2-25 (71)
145 PRK10872 relA (p)ppGpp synthet 49.8 15 0.00033 30.1 2.4 36 5-42 405-440 (743)
146 PRK11840 bifunctional sulfur c 49.5 28 0.00062 25.7 3.6 28 5-37 2-29 (326)
147 TIGR00691 spoT_relA (p)ppGpp s 48.2 17 0.00037 29.3 2.6 36 5-42 361-396 (683)
148 PRK05641 putative acetyl-CoA c 47.6 20 0.00044 23.5 2.4 19 1-22 22-40 (153)
149 KOG4214 Myotrophin and similar 47.4 1.5 3.2E-05 27.1 -2.7 26 10-35 87-112 (117)
150 PRK11106 queuosine biosynthesi 46.2 16 0.00036 25.4 1.9 29 25-53 167-204 (231)
151 smart00166 UBX Domain present 45.5 56 0.0012 18.4 4.0 27 4-30 5-31 (80)
152 TIGR00601 rad23 UV excision re 45.1 37 0.0008 25.6 3.8 26 5-30 2-27 (378)
153 smart00213 UBQ Ubiquitin homol 44.8 46 0.00099 17.2 3.5 24 5-29 2-25 (64)
154 PF06508 QueC: Queuosine biosy 44.6 10 0.00022 26.0 0.7 25 26-50 166-197 (209)
155 cd01808 hPLIC_N Ubiquitin-like 44.3 54 0.0012 17.9 3.7 24 5-29 2-25 (71)
156 smart00257 LysM Lysin motif. 42.8 35 0.00076 15.3 2.4 20 18-37 2-21 (44)
157 TIGR00364 exsB protein. This p 42.1 24 0.00053 23.5 2.3 26 25-50 163-196 (201)
158 PRK08569 rpl18p 50S ribosomal 41.2 22 0.00047 24.4 1.8 18 25-42 118-135 (193)
159 cd01616 TGS The TGS domain, na 41.1 48 0.001 16.4 3.5 24 10-35 5-28 (60)
160 PRK04290 30S ribosomal protein 40.6 48 0.001 20.8 3.2 57 1-59 1-58 (115)
161 COG1356 tfx Transcriptional re 40.0 43 0.00094 21.6 3.0 26 15-40 67-99 (143)
162 cd06409 PB1_MUG70 The MUG70 pr 38.8 77 0.0017 18.8 3.8 34 5-38 2-39 (86)
163 PRK05783 hypothetical protein; 38.6 48 0.001 19.6 2.8 31 3-37 4-34 (84)
164 COG2914 Uncharacterized protei 37.4 98 0.0021 18.9 4.4 36 1-36 1-39 (99)
165 PF00789 UBX: UBX domain; Int 37.0 79 0.0017 17.7 4.0 27 3-29 6-32 (82)
166 cd01772 SAKS1_UBX SAKS1-like U 36.9 82 0.0018 17.9 4.1 28 4-31 5-32 (79)
167 PF14478 DUF4430: Domain of un 36.7 19 0.0004 19.9 0.9 17 23-40 1-17 (68)
168 COG2440 FixX Ferredoxin-like p 36.6 16 0.00034 22.4 0.5 14 45-58 69-83 (99)
169 PF00240 ubiquitin: Ubiquitin 36.3 42 0.00091 18.0 2.3 20 11-30 3-22 (69)
170 TIGR03027 pepcterm_export puta 36.2 58 0.0013 21.1 3.3 20 17-36 92-112 (165)
171 PRK14125 cell division suppres 34.8 56 0.0012 19.9 2.8 20 16-35 37-56 (103)
172 COG0317 SpoT Guanosine polypho 34.5 48 0.001 27.1 3.1 36 5-42 388-423 (701)
173 PRK15431 ferrous iron transpor 32.1 25 0.00054 20.6 0.9 13 37-49 52-64 (78)
174 PF02591 DUF164: Putative zinc 31.9 23 0.0005 18.8 0.7 15 43-57 22-36 (56)
175 PF11823 DUF3343: Protein of u 31.5 41 0.0009 18.7 1.8 28 25-52 16-47 (73)
176 PF14120 YhzD: YhzD-like prote 31.4 52 0.0011 18.3 2.1 24 1-24 1-27 (61)
177 PRK10509 bacterioferritin-asso 31.2 36 0.00079 18.8 1.5 30 24-53 12-46 (64)
178 PF07593 UnbV_ASPIC: ASPIC and 30.7 54 0.0012 18.2 2.2 22 5-26 46-68 (71)
179 PF09012 FeoC: FeoC like trans 30.3 30 0.00064 19.1 1.0 25 25-50 33-61 (69)
180 TIGR03268 methan_mark_3 putati 29.3 72 0.0016 25.1 3.2 29 12-42 4-32 (503)
181 PRK00413 thrS threonyl-tRNA sy 29.1 77 0.0017 25.1 3.5 29 4-36 2-30 (638)
182 cd04661 MRP_L46 Mitochondrial 28.9 44 0.00096 20.6 1.8 19 20-38 35-58 (132)
183 PF09379 FERM_N: FERM N-termin 28.9 74 0.0016 17.6 2.6 23 10-32 3-25 (80)
184 cd01797 NIRF_N amino-terminal 28.9 1.2E+02 0.0025 17.2 6.3 68 5-84 2-76 (78)
185 PF13670 PepSY_2: Peptidase pr 28.8 1.2E+02 0.0026 17.2 3.5 20 4-23 56-75 (83)
186 PF14453 ThiS-like: ThiS-like 28.7 1.1E+02 0.0023 16.8 3.0 38 5-59 2-39 (57)
187 TIGR01003 PTS_HPr_family Phosp 28.3 41 0.00089 19.3 1.4 30 1-34 1-30 (82)
188 PRK13782 phosphocarrier protei 27.8 40 0.00087 19.4 1.3 30 1-34 1-30 (82)
189 PF11966 SSURE: Fibronectin-bi 27.2 71 0.0015 18.6 2.2 18 19-36 32-49 (81)
190 PF06345 Drf_DAD: DRF Autoregu 27.2 40 0.00086 13.3 0.8 9 24-32 4-12 (15)
191 KOG0010 Ubiquitin-like protein 26.9 94 0.002 24.4 3.4 37 3-42 15-51 (493)
192 PRK11649 putative peptidase; P 26.1 1E+02 0.0022 23.7 3.5 21 16-36 96-116 (439)
193 PF09776 Mitoc_L55: Mitochondr 25.2 81 0.0018 19.8 2.4 25 3-27 44-68 (116)
194 KOG4616 Mitochondrial ribosoma 25.1 76 0.0016 19.9 2.2 17 4-20 58-74 (137)
195 TIGR03028 EpsE polysaccharide 24.9 1.2E+02 0.0026 21.0 3.5 22 17-38 176-197 (239)
196 PF01333 Apocytochr_F_C: Apocy 24.4 86 0.0019 19.8 2.4 24 4-27 24-47 (118)
197 KOG2775 Metallopeptidase [Gene 24.1 61 0.0013 24.2 1.9 28 20-47 106-148 (397)
198 smart00295 B41 Band 4.1 homolo 23.9 2.1E+02 0.0046 18.5 4.8 28 4-31 4-31 (207)
199 PF12916 DUF3834: Protein of u 23.8 37 0.0008 23.4 0.7 23 20-42 124-146 (201)
200 PF14601 TFX_C: DNA_binding pr 23.5 88 0.0019 18.5 2.2 25 16-40 15-46 (84)
201 PRK10850 PTS system phosphohis 23.5 52 0.0011 19.2 1.2 30 1-34 1-30 (85)
202 PRK01966 ddl D-alanyl-alanine 23.0 26 0.00057 25.3 -0.1 35 1-36 1-37 (333)
203 PRK06423 phosphoribosylformylg 23.0 94 0.002 17.4 2.2 30 3-36 2-31 (73)
204 PF14847 Ras_bdg_2: Ras-bindin 22.3 2E+02 0.0043 17.6 3.7 33 5-37 2-38 (105)
205 PRK10897 phosphohistidinoprote 22.2 49 0.0011 19.6 1.0 31 2-36 3-33 (90)
206 cd01770 p47_UBX p47-like ubiqu 21.8 1.7E+02 0.0037 16.7 4.4 26 4-29 5-30 (79)
207 PF13881 Rad60-SLD_2: Ubiquiti 21.7 2.1E+02 0.0045 17.6 4.4 29 3-31 2-31 (111)
208 COG4824 Phage-related holin (L 21.6 51 0.0011 21.2 1.0 21 19-39 95-115 (133)
209 PRK14540 nucleoside diphosphat 21.5 1.1E+02 0.0023 19.4 2.5 33 1-37 1-33 (134)
210 PF05164 ZapA: Cell division p 21.4 1E+02 0.0022 17.4 2.2 18 4-24 2-19 (89)
211 PF14044 NETI: NETI protein 21.4 92 0.002 17.1 1.8 15 18-32 2-16 (57)
212 PRK13780 phosphocarrier protei 21.0 60 0.0013 19.0 1.2 30 1-34 1-30 (88)
213 PRK13669 hypothetical protein; 20.8 32 0.00069 20.1 -0.1 32 27-59 20-56 (78)
214 KOG1667 Zn2+-binding protein M 20.8 46 0.001 24.1 0.7 20 29-48 133-152 (320)
215 KOG3217 Protein tyrosine phosp 20.6 85 0.0018 20.8 1.9 23 21-43 55-77 (159)
216 PF07362 CcdA: Post-segregatio 20.6 90 0.0019 17.7 1.8 26 17-42 4-29 (72)
217 CHL00075 rpl21 ribosomal prote 20.5 85 0.0018 19.4 1.8 22 1-26 1-22 (108)
218 cd01667 TGS_ThrRS_N TGS _ThrRS 20.5 1.3E+02 0.0028 14.8 3.3 21 11-33 6-26 (61)
219 cd04882 ACT_Bt0572_2 C-termina 20.5 1.1E+02 0.0025 15.6 2.2 22 16-37 43-64 (65)
220 PF04324 Fer2_BFD: BFD-like [2 20.2 22 0.00047 18.7 -0.8 29 25-53 13-47 (55)
221 PF09862 DUF2089: Protein of u 20.1 75 0.0016 19.9 1.5 26 45-71 14-39 (113)
No 1
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.97 E-value=6.7e-31 Score=160.62 Aligned_cols=96 Identities=71% Similarity=1.255 Sum_probs=89.6
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeE
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISY 82 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~ 82 (98)
.++|+|+.++|..+++++++|+|||++|+++|+++|++|++|.||+|+++|++|.+.+.+...|+++++++|++|+||++
T Consensus 2 ~~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~~ 81 (97)
T TIGR02008 2 TYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAY 81 (97)
T ss_pred eEEEEEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeCE
Confidence 57888877888777999999999999999999999999999999999999999999887666789889999999999999
Q ss_pred ECCCeEEEecCccccC
Q 034300 83 PTSDCVIQSHKEEELC 98 (98)
Q Consensus 83 ~~~d~~i~~~~~~~~~ 98 (98)
+.+|++|++++++++|
T Consensus 82 ~~~di~v~~~~~~~~~ 97 (97)
T TIGR02008 82 PTSDCTIETHKEEDLY 97 (97)
T ss_pred ECCCeEEEeccccccC
Confidence 9999999999999998
No 2
>CHL00134 petF ferredoxin; Validated
Probab=99.97 E-value=9.6e-31 Score=160.51 Aligned_cols=97 Identities=65% Similarity=1.142 Sum_probs=89.7
Q ss_pred CceEEEEEEcC--CCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEe
Q 034300 1 MAVYKIKLIGP--NGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLT 78 (98)
Q Consensus 1 M~~~~v~i~~~--~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~La 78 (98)
|..|+|+| .+ +|..+.|++++|+|||++|+++||++|++|+.|.||+|++++++|.+.+.+...|+.++.++|++|+
T Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~ 79 (99)
T CHL00134 1 MATYKVTL-LSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLT 79 (99)
T ss_pred CCeEEEEE-EecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEE
Confidence 77889998 44 6666789999999999999999999999999999999999999999988776678988999999999
Q ss_pred eeeEECCCeEEEecCccccC
Q 034300 79 CISYPTSDCVIQSHKEEELC 98 (98)
Q Consensus 79 Cq~~~~~d~~i~~~~~~~~~ 98 (98)
||++|.+|+.|++|.++++|
T Consensus 80 C~~~~~~d~~i~~~~~~~~~ 99 (99)
T CHL00134 80 CVAYPTSDCTILTHQEEELY 99 (99)
T ss_pred eeCEECCCeEEEeccccccC
Confidence 99999999999999999987
No 3
>PLN03136 Ferredoxin; Provisional
Probab=99.96 E-value=1.2e-28 Score=160.38 Aligned_cols=96 Identities=70% Similarity=1.230 Sum_probs=88.3
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeee
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCI 80 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq 80 (98)
|..++|+|+.++| .++|++++|+||||+|+++|+++||+|+.|.||+|++++++|.+++.+...|++++.++|++|+||
T Consensus 52 m~~~~V~l~~~~~-~~~~~~~~g~tILdAa~~~Gi~lp~sCr~G~CGtC~~~l~~G~V~~~~~~~L~~~e~~~G~~LaC~ 130 (148)
T PLN03136 52 MATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCV 130 (148)
T ss_pred eeeEEEEEecCCC-cEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEecCcCccCcccCCCHHHhcCCEEEEeE
Confidence 5678898866665 368999999999999999999999999999999999999999999887778999999999999999
Q ss_pred eEECCCeEEEecCcccc
Q 034300 81 SYPTSDCVIQSHKEEEL 97 (98)
Q Consensus 81 ~~~~~d~~i~~~~~~~~ 97 (98)
++|.+|++|++++++++
T Consensus 131 a~p~sD~~Ie~~~e~~l 147 (148)
T PLN03136 131 AYPTSDVVIETHKEEAI 147 (148)
T ss_pred eEECCCcEEecCChhhc
Confidence 99999999999999886
No 4
>PTZ00038 ferredoxin; Provisional
Probab=99.95 E-value=1.3e-27 Score=160.68 Aligned_cols=96 Identities=58% Similarity=1.081 Sum_probs=88.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeee
Q 034300 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCIS 81 (98)
Q Consensus 2 ~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~ 81 (98)
+.|+|+|..++|. +++++++|+|||++|+++||++|++|+.|.||+|++++++|++.+.+...|++++.++|++|+||+
T Consensus 94 ~~~~Vt~~~~~g~-~~~~v~~geTILdAae~aGI~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaCqa 172 (191)
T PTZ00038 94 LFYNITLQTPDGE-KVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTC 172 (191)
T ss_pred ceEEEEEEeCCCc-EEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEeEEeecccccCccccCCHHHhcCCEEEEeeC
Confidence 4678888556663 589999999999999999999999999999999999999999998888889999999999999999
Q ss_pred EECCCeEEEecCccccC
Q 034300 82 YPTSDCVIQSHKEEELC 98 (98)
Q Consensus 82 ~~~~d~~i~~~~~~~~~ 98 (98)
+|.+|++|++++++++|
T Consensus 173 ~p~sDi~Ie~p~e~~~~ 189 (191)
T PTZ00038 173 YPKSDCTIETHKEDELH 189 (191)
T ss_pred EECCCeEEecCChHHhc
Confidence 99999999999998775
No 5
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.93 E-value=1.2e-25 Score=134.15 Aligned_cols=82 Identities=28% Similarity=0.522 Sum_probs=68.9
Q ss_pred EEEEEEcCCCCEEEEEeCC-CchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeE
Q 034300 4 YKIKLIGPNGEEHEFEAQE-DQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISY 82 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~-g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~ 82 (98)
++|+| .++|. +|++++ ++|||+||+++|+++||+|+.|.||+|++++++|++.+.+.. ..+.++|++|+||++
T Consensus 2 ~~v~~-~~~~~--~~~~~~~~~tlL~a~~~~gi~~p~~Cr~G~Cg~C~~~~~sG~v~~~~~~---~~~~~~g~~L~C~~~ 75 (84)
T PRK10713 2 ARVTL-RITGT--QLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEP---LAFIQPGEILPCCCR 75 (84)
T ss_pred CEEEE-EeCCc--EEEecCCCCcHHHHHHHcCCCCCCCCCCeECCCCEeEEEeCeEecCCCc---cchhhCCEEEEeeCE
Confidence 44666 45664 788986 599999999999999999999999999999999999875432 225678999999999
Q ss_pred ECCCeEEEe
Q 034300 83 PTSDCVIQS 91 (98)
Q Consensus 83 ~~~d~~i~~ 91 (98)
|.+|++|++
T Consensus 76 p~sd~~ie~ 84 (84)
T PRK10713 76 AKGDIEIEM 84 (84)
T ss_pred ECCCEEEeC
Confidence 999999874
No 6
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.91 E-value=2.5e-24 Score=135.56 Aligned_cols=93 Identities=22% Similarity=0.349 Sum_probs=76.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc-cccccccEEEEeeeeee--c-----CCCCCCC-hhhhhCC
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR-AGACSTCAGKLVSGSVD--Q-----SDGSFLD-DNQMEAG 74 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~--~-----~~~~~l~-~~~~~~~ 74 (98)
++|+|+.++|+++++++++|+|||++++++|+++++.|+ .|.||+|+|+|+++... . .|...|+ ..+..++
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~ 80 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTET 80 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCC
Confidence 478888899988899999999999999999999999999 79999999999654321 1 1334555 3456789
Q ss_pred eEEeeeeEEC---CCeEEEecCccc
Q 034300 75 YLLTCISYPT---SDCVIQSHKEEE 96 (98)
Q Consensus 75 ~~LaCq~~~~---~d~~i~~~~~~~ 96 (98)
+|||||+.+. ++++|++|+.++
T Consensus 81 sRLaCQ~~v~~~~~~~~v~ip~~~~ 105 (117)
T PLN02593 81 SRLGCQVIAKPELDGMRLALPAATR 105 (117)
T ss_pred eEecceeEeecCCCCEEEEcCchhc
Confidence 9999999998 478999998753
No 7
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.90 E-value=3e-23 Score=149.49 Aligned_cols=91 Identities=40% Similarity=0.789 Sum_probs=81.1
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecC--CCCCCChhhhhCCeEEeee
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQS--DGSFLDDNQMEAGYLLTCI 80 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~--~~~~l~~~~~~~~~~LaCq 80 (98)
+++|+| .++|+ ++++++|+|||++|+++|++++++|+.|.||+|++++++|.+.+. +...|++++.++|++|+||
T Consensus 2 ~~~v~~-~~~~~--~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~ 78 (339)
T PRK07609 2 SFQVTL-QPSGR--QFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCC 78 (339)
T ss_pred cEEEEE-ecCCe--EEEeCCCCcHHHHHHHcCCCCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEee
Confidence 357888 56664 899999999999999999999999999999999999999999875 5567898889999999999
Q ss_pred eEECCCeEEEecCccc
Q 034300 81 SYPTSDCVIQSHKEEE 96 (98)
Q Consensus 81 ~~~~~d~~i~~~~~~~ 96 (98)
+++.+|++|+++....
T Consensus 79 ~~~~~d~~i~~~~~~~ 94 (339)
T PRK07609 79 AKPLSDLVLEAREVPA 94 (339)
T ss_pred CEECCCEEEEeccccc
Confidence 9999999999986543
No 8
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.90 E-value=9.5e-24 Score=130.08 Aligned_cols=91 Identities=32% Similarity=0.586 Sum_probs=68.6
Q ss_pred EEEEcCCCC-EEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeee--eeecCCC---CCCChhhhhCCeEEee
Q 034300 6 IKLIGPNGE-EHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSG--SVDQSDG---SFLDDNQMEAGYLLTC 79 (98)
Q Consensus 6 v~i~~~~g~-~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G--~~~~~~~---~~l~~~~~~~~~~LaC 79 (98)
+.|+.+++. ...+.++.|+|||++|+++||+++|+|+.|.||+|+|+|++| .+...+. .+|.+.....++||+|
T Consensus 4 ~~~v~~~~~~~~~~~~~~g~tiLe~a~~~gi~i~~~C~~g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~C 83 (102)
T COG0633 4 IAFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSC 83 (102)
T ss_pred eEEEeccCCcceEEeccCCcHHHHHHHHCCCcceecCCCCccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEee
Confidence 334444553 334555669999999999999999999999999999999999 5554432 3444345667799999
Q ss_pred eeEECCCeEEEecCccc
Q 034300 80 ISYPTSDCVIQSHKEEE 96 (98)
Q Consensus 80 q~~~~~d~~i~~~~~~~ 96 (98)
|+++.+|+.+++....+
T Consensus 84 q~~~~~d~~i~~~~~~~ 100 (102)
T COG0633 84 QCRVKGDLDIEVVEEPE 100 (102)
T ss_pred eeEECCCcceEEEeccC
Confidence 99999998876655443
No 9
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.90 E-value=5.1e-23 Score=121.61 Aligned_cols=80 Identities=51% Similarity=0.872 Sum_probs=72.1
Q ss_pred CCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeEECCCeEEE
Q 034300 11 PNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQ 90 (98)
Q Consensus 11 ~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~~~~d~~i~ 90 (98)
.+|..+++++++|+|||++++++|++++++|+.|.||+|+++|.+|.+.+.....++..+..+++||+||+++.+|++|+
T Consensus 5 ~~~~~~~~~~~~g~~ll~al~~~g~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~~i~v~ 84 (84)
T cd00207 5 VPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDGLVIE 84 (84)
T ss_pred cCCCCEEEEECCCCcHHHHHHHcCCCcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCCCcEEC
Confidence 34555789999999999999999999999999999999999999999988766777777888999999999999999874
No 10
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.89 E-value=7.2e-23 Score=148.08 Aligned_cols=91 Identities=31% Similarity=0.540 Sum_probs=79.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeec--CCCCCCChhhhhCCeEEeeee
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ--SDGSFLDDNQMEAGYLLTCIS 81 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~--~~~~~l~~~~~~~~~~LaCq~ 81 (98)
++|++..++|+...+++++|+|||++|+++|+.+|++|+.|.||+|++++++|.+.. .+...|++.+.+++++|+||+
T Consensus 3 ~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~ 82 (340)
T PRK11872 3 HKVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQT 82 (340)
T ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeC
Confidence 566664467877778999999999999999999999999999999999999999875 344568888889999999999
Q ss_pred EECCCeEEEecCc
Q 034300 82 YPTSDCVIQSHKE 94 (98)
Q Consensus 82 ~~~~d~~i~~~~~ 94 (98)
++.+|+.|+++.+
T Consensus 83 ~~~~d~~i~~~~~ 95 (340)
T PRK11872 83 RVKSDAAFYFDFD 95 (340)
T ss_pred EECCceEEEecCc
Confidence 9999999998753
No 11
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.88 E-value=1.5e-22 Score=149.40 Aligned_cols=93 Identities=18% Similarity=0.357 Sum_probs=81.6
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc-cccccccEEEEeeeeeecC--CCCCCChhhhhCCeEE
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR-AGACSTCAGKLVSGSVDQS--DGSFLDDNQMEAGYLL 77 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~--~~~~l~~~~~~~~~~L 77 (98)
|++++|+++..+|..+++++++|+|||++|+++|+++|+.|+ .|.||+|++++.+|.+... +...|++.+.++|+||
T Consensus 27 ~~~~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rL 106 (405)
T TIGR01941 27 VSSGDITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRL 106 (405)
T ss_pred cccccEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEE
Confidence 567778886666666799999999999999999999999999 6899999999999987643 4467888889999999
Q ss_pred eeeeEECCCeEEEecC
Q 034300 78 TCISYPTSDCVIQSHK 93 (98)
Q Consensus 78 aCq~~~~~d~~i~~~~ 93 (98)
+||+.+.+|++|+++.
T Consensus 107 aCq~~~~~d~~i~~~~ 122 (405)
T TIGR01941 107 SCQVKVKQDMSIEIPE 122 (405)
T ss_pred EeeCEECCCEEEEECc
Confidence 9999999999999874
No 12
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.88 E-value=3e-22 Score=124.82 Aligned_cols=84 Identities=29% Similarity=0.485 Sum_probs=68.0
Q ss_pred cCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc-cccccccEEEEeeeeeecCCCC-----CCChh-hhhCCeEEeeeeE
Q 034300 10 GPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR-AGACSTCAGKLVSGSVDQSDGS-----FLDDN-QMEAGYLLTCISY 82 (98)
Q Consensus 10 ~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~~~~-----~l~~~-~~~~~~~LaCq~~ 82 (98)
.|.| +++++++|+|||++|+++|++++++|+ .|.||+|+++|.+|........ .|+.. +..+++|||||++
T Consensus 12 ~p~~--~~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~~ 89 (110)
T TIGR02007 12 CPEG--AVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQAV 89 (110)
T ss_pred CCCC--eEEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeEE
Confidence 4666 489999999999999999999999999 7999999999999975544332 22221 3467899999999
Q ss_pred EC-CCeEEEecCcc
Q 034300 83 PT-SDCVIQSHKEE 95 (98)
Q Consensus 83 ~~-~d~~i~~~~~~ 95 (98)
+. +|++|+++...
T Consensus 90 ~~~~dl~v~~~~~~ 103 (110)
T TIGR02007 90 VADEDLVVEIPKYT 103 (110)
T ss_pred EcCCCEEEEECchh
Confidence 87 69999998654
No 13
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.88 E-value=1.8e-22 Score=130.73 Aligned_cols=94 Identities=16% Similarity=0.250 Sum_probs=78.7
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHc-CCCccCCCc-cccccccEEEEeeeeeec------CCCCCCChh-hhhC
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEA-GVDLPYSCR-AGACSTCAGKLVSGSVDQ------SDGSFLDDN-QMEA 73 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~-gi~i~~~C~-~G~Cg~C~v~v~~G~~~~------~~~~~l~~~-~~~~ 73 (98)
.++|+|+.++|..+++++++|+|||+++.++ ++++++.|+ .|.||+|+|+|.+|.... .|.+.|+.. +..+
T Consensus 35 ~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~~ 114 (143)
T PTZ00490 35 KVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKE 114 (143)
T ss_pred cEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCCC
Confidence 4688998899988899999999999999995 789999999 999999999998875332 234566655 6789
Q ss_pred CeEEeeeeEECC---CeEEEecCccc
Q 034300 74 GYLLTCISYPTS---DCVIQSHKEEE 96 (98)
Q Consensus 74 ~~~LaCq~~~~~---d~~i~~~~~~~ 96 (98)
++|||||+.+.+ +++|++|+...
T Consensus 115 gsRLaCQi~v~~~ldgl~V~vp~~~~ 140 (143)
T PTZ00490 115 TSRLACQVDLTPEMDGLEVELPSYVT 140 (143)
T ss_pred CcEEeeeEEEecCCCCEEEEeCcccc
Confidence 999999999985 56999998653
No 14
>PRK05713 hypothetical protein; Provisional
Probab=99.87 E-value=4.3e-22 Score=142.47 Aligned_cols=80 Identities=28% Similarity=0.537 Sum_probs=73.4
Q ss_pred CCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeEECCCeEEE
Q 034300 11 PNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQ 90 (98)
Q Consensus 11 ~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~~~~d~~i~ 90 (98)
++|+ +|++++|+|||++|+++||++|++|++|.||+|++++++|.+.......|++++.++|+||+||+++.+|+.|+
T Consensus 6 ~~~~--~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~ 83 (312)
T PRK05713 6 VGER--RWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGDLRVE 83 (312)
T ss_pred cCCe--EEEECCCCcHHHHHHHcCCCCCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECCceEEE
Confidence 4664 89999999999999999999999999999999999999999876555678888899999999999999999999
Q ss_pred ec
Q 034300 91 SH 92 (98)
Q Consensus 91 ~~ 92 (98)
++
T Consensus 84 ~~ 85 (312)
T PRK05713 84 VF 85 (312)
T ss_pred ec
Confidence 86
No 15
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.86 E-value=1.2e-21 Score=114.77 Aligned_cols=74 Identities=38% Similarity=0.724 Sum_probs=63.9
Q ss_pred cCCCCEEEEEeCCCch-HHHHHHHc-CCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCe-EEeeeeEEC
Q 034300 10 GPNGEEHEFEAQEDQY-ILDAAEEA-GVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGY-LLTCISYPT 84 (98)
Q Consensus 10 ~~~g~~~~i~~~~g~t-lL~a~~~~-gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~-~LaCq~~~~ 84 (98)
..+|+.++|++++|+| ||++|+++ |++++++|+.|.||+|+++|.+|++ +.....++.++..+++ ||+||++|+
T Consensus 2 ~i~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~-~~~~~~~~~~~~~~~~~rLaCq~~~t 78 (78)
T PF00111_consen 2 TINGKGVTVEVPPGETLLLDALERAGGIGIPYSCGGGGCGTCRVRVLEGEV-QSNETFLEDEELAEGGIRLACQTRVT 78 (78)
T ss_dssp ETTTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESEE-ETTTSSSHHHHHHTTEEEEGGGSEES
T ss_pred EECCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCCCccCCcEEEEeeCcc-cCCcccCCHHHHHcCCCcCCcEEEeC
Confidence 4588888999999999 99999999 9999999998889999999999999 4445566666666665 799999874
No 16
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.86 E-value=2.3e-21 Score=140.37 Aligned_cols=87 Identities=38% Similarity=0.737 Sum_probs=76.3
Q ss_pred EEEEEEcCCCCEEE-EEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeE
Q 034300 4 YKIKLIGPNGEEHE-FEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISY 82 (98)
Q Consensus 4 ~~v~i~~~~g~~~~-i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~ 82 (98)
++|+| ...|+... +.+++|+|||++|+++|+++|++|+.|.||+|++++++|.+.+.+...|+.++.++|++|+||++
T Consensus 263 ~~v~~-~~~~~~~~~~~~~~~~slL~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~ 341 (352)
T TIGR02160 263 SKVTV-TLDGRSTETSSLSRDESVLDAALRARPDLPFACKGGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVLTCQAY 341 (352)
T ss_pred eEEEE-EECCceEEEEecCCCCcHHHHHHHcCCCCcCCCCCccCCCCEEEEeccccccccccCCCHHHHhCCcEEEeeEE
Confidence 56777 45776443 57899999999999999999999999999999999999999987777789889999999999999
Q ss_pred ECCC-eEEEe
Q 034300 83 PTSD-CVIQS 91 (98)
Q Consensus 83 ~~~d-~~i~~ 91 (98)
|.+| ++|++
T Consensus 342 ~~~~~~~~~~ 351 (352)
T TIGR02160 342 PLSDKLVVDY 351 (352)
T ss_pred ECCCcEEEec
Confidence 9876 77754
No 17
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.86 E-value=2.8e-21 Score=139.23 Aligned_cols=84 Identities=31% Similarity=0.537 Sum_probs=74.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeEE
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYP 83 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~~ 83 (98)
++|++. ..| +++.+++|+|||++|+++|+++|++|+.|.||+|++++++|.+.+.....|++++.++|++|+||++|
T Consensus 249 ~~v~~~-~~~--~~~~~~~~~~lL~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~ 325 (332)
T PRK10684 249 LTFTKL-QPA--REFYAPVGTTLLEALESNKVPVVAACRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSCHP 325 (332)
T ss_pred eEEEEe-cCC--EEEEeCCCChHHHHHHHcCCCccCCCCCcCCCCCEEEEecCcccccccccCCHHHHhCCcEEEeeCEE
Confidence 456663 334 48999999999999999999999999999999999999999999877678999999999999999999
Q ss_pred CCCeEEE
Q 034300 84 TSDCVIQ 90 (98)
Q Consensus 84 ~~d~~i~ 90 (98)
.+|++|+
T Consensus 326 ~~d~~i~ 332 (332)
T PRK10684 326 QGDLVLA 332 (332)
T ss_pred CCCeEEC
Confidence 9998763
No 18
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.82 E-value=4e-20 Score=136.61 Aligned_cols=78 Identities=22% Similarity=0.402 Sum_probs=70.6
Q ss_pred EEEEeCCCchHHHHHHHcCCCccCCCc-cccccccEEEEeeeeeecC--CCCCCChhhhhCCeEEeeeeEECCCeEEEec
Q 034300 16 HEFEAQEDQYILDAAEEAGVDLPYSCR-AGACSTCAGKLVSGSVDQS--DGSFLDDNQMEAGYLLTCISYPTSDCVIQSH 92 (98)
Q Consensus 16 ~~i~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~--~~~~l~~~~~~~~~~LaCq~~~~~d~~i~~~ 92 (98)
+++++++|+|||++++++|+++|++|+ +|.||+|++++++|.+... +...|++.+.++++|||||+++.+|++|+++
T Consensus 46 ~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq~~~~~d~~ie~~ 125 (409)
T PRK05464 46 KTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQVKVKQDMKIEVP 125 (409)
T ss_pred EEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEeeCEECCCEEEEEC
Confidence 589999999999999999999999999 6999999999999987643 4556888888999999999999999999987
Q ss_pred C
Q 034300 93 K 93 (98)
Q Consensus 93 ~ 93 (98)
.
T Consensus 126 ~ 126 (409)
T PRK05464 126 E 126 (409)
T ss_pred c
Confidence 4
No 19
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.76 E-value=9.1e-19 Score=124.18 Aligned_cols=81 Identities=19% Similarity=0.394 Sum_probs=72.8
Q ss_pred CEEEEEeCCCchHHHHHHHcCCCccCCCc-cccccccEEEEeeeeeec--CCCCCCChhhhhCCeEEeeeeEECCCeEEE
Q 034300 14 EEHEFEAQEDQYILDAAEEAGVDLPYSCR-AGACSTCAGKLVSGSVDQ--SDGSFLDDNQMEAGYLLTCISYPTSDCVIQ 90 (98)
Q Consensus 14 ~~~~i~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~--~~~~~l~~~~~~~~~~LaCq~~~~~d~~i~ 90 (98)
.++++++++|.+||.+|..+||.+++.|| .|+||.|+|+|.+|.-+. .|...++..+.++|+||+||+.+..||.+|
T Consensus 45 ~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RLsCQ~~Vk~dm~le 124 (410)
T COG2871 45 PEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRLSCQVNVKHDMDLE 124 (410)
T ss_pred hhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceEEEEecccccceee
Confidence 34689999999999999999999999999 899999999999886554 355678888999999999999999999999
Q ss_pred ecCc
Q 034300 91 SHKE 94 (98)
Q Consensus 91 ~~~~ 94 (98)
+|++
T Consensus 125 vpEe 128 (410)
T COG2871 125 VPEE 128 (410)
T ss_pred chHH
Confidence 9875
No 20
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.69 E-value=2.9e-17 Score=122.86 Aligned_cols=90 Identities=29% Similarity=0.409 Sum_probs=73.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc-cccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeE
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR-AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISY 82 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~ 82 (98)
.-|+| .|.|+ ..+ +.|.|||++|++.|+-+.+.|| +|+||+|.|-|.+|.....+..--..-....|||||||++
T Consensus 2 p~v~f-~psgk--r~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~ 77 (614)
T COG3894 2 PLVTF-MPSGK--RGE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQ 77 (614)
T ss_pred ceeEe-ecCCC--cCC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehh
Confidence 34788 89997 455 9999999999999999999999 9999999999999986543221112223456999999999
Q ss_pred ECCCeEEEecCcccc
Q 034300 83 PTSDCVIQSHKEEEL 97 (98)
Q Consensus 83 ~~~d~~i~~~~~~~~ 97 (98)
+.+|++|.+|++.++
T Consensus 78 v~gd~~i~ip~es~l 92 (614)
T COG3894 78 VLGDLVIFIPPESRL 92 (614)
T ss_pred hcCceEEEcCchhhH
Confidence 999999999998654
No 21
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.57 E-value=5.3e-15 Score=95.81 Aligned_cols=96 Identities=25% Similarity=0.346 Sum_probs=77.2
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc-cccccccEEEEeeeeeecC------CCCCCCh-hhhhCC
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR-AGACSTCAGKLVSGSVDQS------DGSFLDD-NQMEAG 74 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~------~~~~l~~-~~~~~~ 74 (98)
.++|+|+.+||.++.+....|+|||++|.++||+++..|. .-.|.+|+|.|-.-..... |.++|.. -.+.+.
T Consensus 43 ~i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~t 122 (159)
T KOG3309|consen 43 DIKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTET 122 (159)
T ss_pred eEEEEEECCCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhccccc
Confidence 4789999999999999999999999999999999999999 8899999999976543321 2233331 235678
Q ss_pred eEEeeeeEECC---CeEEEecCccccC
Q 034300 75 YLLTCISYPTS---DCVIQSHKEEELC 98 (98)
Q Consensus 75 ~~LaCq~~~~~---d~~i~~~~~~~~~ 98 (98)
+||.||..... +++|.+|+.-+.|
T Consensus 123 SRLGCQI~l~keldG~~v~vP~atrn~ 149 (159)
T KOG3309|consen 123 SRLGCQIVLTKELDGMRVAVPEATRNF 149 (159)
T ss_pred cccceEEEeccccCCcEEECccccccc
Confidence 99999999864 5899999876643
No 22
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.57 E-value=4.6e-15 Score=102.90 Aligned_cols=73 Identities=30% Similarity=0.605 Sum_probs=63.3
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc------cccccccEEEEeeeeeecCCCCCCChhhhhCC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR------AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAG 74 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~------~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~ 74 (98)
|++++|+| ||+ .|++++|+|||+||+++|+.+|+.|+ .|.|+.|+|+| +|. .+
T Consensus 1 m~~v~i~i---dg~--~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v-~g~---------------~~ 59 (234)
T PRK07569 1 MSVKTLTI---DDQ--LVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI-EGS---------------NK 59 (234)
T ss_pred CceEEEEE---CCE--EEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE-CCC---------------Cc
Confidence 77877777 886 69999999999999999999999998 89999999998 332 23
Q ss_pred eEEeeeeEECCCeEEEecCc
Q 034300 75 YLLTCISYPTSDCVIQSHKE 94 (98)
Q Consensus 75 ~~LaCq~~~~~d~~i~~~~~ 94 (98)
.+.||++.+..+|.|++.++
T Consensus 60 ~~~aC~t~v~~Gm~v~t~~~ 79 (234)
T PRK07569 60 LLPACVTPVAEGMVVQTNTP 79 (234)
T ss_pred cccCcCCCCCCCCEEEECCH
Confidence 56799999999999999765
No 23
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.52 E-value=1.3e-14 Score=86.12 Aligned_cols=69 Identities=25% Similarity=0.518 Sum_probs=47.1
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCcc----------ccccccEEEEeeeeeecCCCCCCChhhhh
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRA----------GACSTCAGKLVSGSVDQSDGSFLDDNQME 72 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~----------G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~ 72 (98)
+++|+| ||+ ++++++|+|||+||+++|+.+|+.|+. |.|+.|.|.|- |.
T Consensus 3 ~v~i~i---dG~--~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g~--------------- 61 (82)
T PF13510_consen 3 MVTITI---DGK--PVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-GE--------------- 61 (82)
T ss_dssp EEEEEE---TTE--EEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-SE---------------
T ss_pred EEEEEE---CCE--EEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-CC---------------
Confidence 344544 896 799999999999999999999999986 89999999983 22
Q ss_pred CCeEEeeeeEECCCeEEEecC
Q 034300 73 AGYLLTCISYPTSDCVIQSHK 93 (98)
Q Consensus 73 ~~~~LaCq~~~~~d~~i~~~~ 93 (98)
..+.||++.+.++|.|++.+
T Consensus 62 -~~v~AC~t~v~~GM~V~T~s 81 (82)
T PF13510_consen 62 -PNVRACSTPVEDGMVVETQS 81 (82)
T ss_dssp -EEEETTT-B--TTEEEE---
T ss_pred -cceEcccCCCcCCcEEEEeE
Confidence 23799999999999998865
No 24
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=99.38 E-value=6.9e-13 Score=105.55 Aligned_cols=75 Identities=28% Similarity=0.592 Sum_probs=63.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc------cccccccEEEEeeeeeecCCCCCCChhhhhCCeEE
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR------AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLL 77 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~------~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~L 77 (98)
.+|+| ||+ ++++++|+|||+|++++||.+|+.|+ .|.|+.|.|+|.+|..+ ..++.++
T Consensus 2 ~~i~i---dg~--~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~-----------~~~~~~~ 65 (847)
T PRK08166 2 ATIHV---DGK--EYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPED-----------TRGRLVM 65 (847)
T ss_pred eEEEE---CCE--EEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCcc-----------CCCCccc
Confidence 45666 885 79999999999999999999999998 69999999999987431 2345789
Q ss_pred eeeeEECCCeEEEecCc
Q 034300 78 TCISYPTSDCVIQSHKE 94 (98)
Q Consensus 78 aCq~~~~~d~~i~~~~~ 94 (98)
||++.+..+|+|++.++
T Consensus 66 aC~~~v~~gm~v~t~~~ 82 (847)
T PRK08166 66 SCMTPATDGTFISIDDP 82 (847)
T ss_pred CcCCCCCCCCEEEeCCH
Confidence 99999999999998764
No 25
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=99.27 E-value=1.5e-11 Score=92.75 Aligned_cols=75 Identities=29% Similarity=0.487 Sum_probs=60.3
Q ss_pred CceEEEEEEcCCC-------CEEEEEeCCCchHHHHHHH------cCCCccCCCccccccccEEEEeeeeeecCCCCCCC
Q 034300 1 MAVYKIKLIGPNG-------EEHEFEAQEDQYILDAAEE------AGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLD 67 (98)
Q Consensus 1 M~~~~v~i~~~~g-------~~~~i~~~~g~tlL~a~~~------~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~ 67 (98)
|++++++|+.-|. +++++++++|+|||++|++ .++.++++|+.|.||+|.++| +|.
T Consensus 1 ~~~~~~~i~r~~~~~~~~~~~~~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~---------- 69 (486)
T PRK06259 1 MKMITITVKRFDPEKDEPHFESYEVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI-NGE---------- 69 (486)
T ss_pred CceEEEEEEecCCCCCCceeEEEEEeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE-CCe----------
Confidence 7777877754432 2356677799999999995 667789999999999999995 654
Q ss_pred hhhhhCCeEEeeeeEECCCeEEEecC
Q 034300 68 DNQMEAGYLLTCISYPTSDCVIQSHK 93 (98)
Q Consensus 68 ~~~~~~~~~LaCq~~~~~d~~i~~~~ 93 (98)
.+|+|++.+.++++|+...
T Consensus 70 -------~~laC~~~~~~~~~i~~~~ 88 (486)
T PRK06259 70 -------PVLACKTEVEDGMIIEPLD 88 (486)
T ss_pred -------EecccccCCCCCCEEEecC
Confidence 4789999999999998764
No 26
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=99.25 E-value=1.3e-11 Score=87.78 Aligned_cols=67 Identities=21% Similarity=0.478 Sum_probs=56.5
Q ss_pred cCCCCEEEEEe-CCCchHHHHHHHcCCCccCCCc------cccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeE
Q 034300 10 GPNGEEHEFEA-QEDQYILDAAEEAGVDLPYSCR------AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISY 82 (98)
Q Consensus 10 ~~~g~~~~i~~-~~g~tlL~a~~~~gi~i~~~C~------~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~ 82 (98)
.+||+ ++++ ++|+|||+||+++||.||+-|. .|.|+.|.|.| +|. .+..-||.+.
T Consensus 72 ~IDGk--~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV-eG~---------------~~lv~AC~tp 133 (297)
T PTZ00305 72 FVNKR--PVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV-DGT---------------QNLVVSCATV 133 (297)
T ss_pred EECCE--EEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE-CCC---------------cCcccccCCc
Confidence 34896 8999 9999999999999999999998 57899999987 222 2356799999
Q ss_pred ECCCeEEEecCc
Q 034300 83 PTSDCVIQSHKE 94 (98)
Q Consensus 83 ~~~d~~i~~~~~ 94 (98)
+.++|+|.+.++
T Consensus 134 V~eGM~V~T~Se 145 (297)
T PTZ00305 134 ALPGMSIITDSR 145 (297)
T ss_pred CCCCCEEEeCCH
Confidence 999999998765
No 27
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.19 E-value=3.8e-11 Score=93.47 Aligned_cols=73 Identities=26% Similarity=0.550 Sum_probs=62.3
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc------cccccccEEEEeeeeeecCCCCCCChhhhhCC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR------AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAG 74 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~------~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~ 74 (98)
|++++|+| ||+ ++++++|+|||++|+++|+.+|+.|. .|.|+.|.|+| +|. .+
T Consensus 1 ~~~v~~~i---dg~--~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v-~g~---------------~~ 59 (652)
T PRK12814 1 MNTISLTI---NGR--SVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEI-KGK---------------NR 59 (652)
T ss_pred CCeEEEEE---CCE--EEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEE-CCC---------------cc
Confidence 77777777 885 89999999999999999999999997 68999999987 322 23
Q ss_pred eEEeeeeEECCCeEEEecCc
Q 034300 75 YLLTCISYPTSDCVIQSHKE 94 (98)
Q Consensus 75 ~~LaCq~~~~~d~~i~~~~~ 94 (98)
..+||++.+..+|.|++.++
T Consensus 60 ~~~aC~t~~~~Gm~v~t~~~ 79 (652)
T PRK12814 60 FVPACSTAVSEGMVIETENA 79 (652)
T ss_pred eecCcCCCCCCCCEEEeCcH
Confidence 57899999999999999765
No 28
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=99.13 E-value=9.5e-11 Score=91.85 Aligned_cols=71 Identities=28% Similarity=0.526 Sum_probs=59.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc------cccccccEEEEeeeeeecCCCCCCChhhhhCCeEE
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR------AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLL 77 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~------~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~L 77 (98)
++|+| ||+ ++++++|+|||||++++||.||+.|. .|.|..|.|.|..+. +...-
T Consensus 2 ~~~~I---dg~--~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~---------------~~~~~ 61 (687)
T PRK09130 2 VKLKV---DGK--EIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGP---------------PKPVA 61 (687)
T ss_pred eEEEE---CCE--EEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCC---------------CCccc
Confidence 45666 885 89999999999999999999999998 789999999984211 12466
Q ss_pred eeeeEECCCeEEEecCc
Q 034300 78 TCISYPTSDCVIQSHKE 94 (98)
Q Consensus 78 aCq~~~~~d~~i~~~~~ 94 (98)
||.+.+..+|+|.+.++
T Consensus 62 sC~~~v~~gm~v~T~s~ 78 (687)
T PRK09130 62 SCAMPVGEGMVIFTNTP 78 (687)
T ss_pred ccCCCCCCCCEEEeCCH
Confidence 99999999999999765
No 29
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=99.12 E-value=1.2e-10 Score=90.97 Aligned_cols=71 Identities=34% Similarity=0.630 Sum_probs=58.2
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc------cccccccEEEEeeeeeecCCCCCCChhhhhCCeE
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR------AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYL 76 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~------~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~ 76 (98)
|.||+| ||+ ++++++|+|||+|++++||+||+.|. .|.|..|.|.+-.+. ..+
T Consensus 1 m~tI~I---DG~--ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~----------------k~~ 59 (693)
T COG1034 1 MVTITI---DGK--EIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAP----------------KLV 59 (693)
T ss_pred CeEEEE---CCE--EEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCC----------------ccc
Confidence 345666 886 89999999999999999999999998 478888888873311 357
Q ss_pred EeeeeEECCCeEEEecCc
Q 034300 77 LTCISYPTSDCVIQSHKE 94 (98)
Q Consensus 77 LaCq~~~~~d~~i~~~~~ 94 (98)
.||.+.+..+|+|.+.++
T Consensus 60 ~SC~tpv~dGM~I~T~s~ 77 (693)
T COG1034 60 ASCATPVTDGMVISTNSE 77 (693)
T ss_pred cccccccCCCeEEecCCH
Confidence 799999999999988765
No 30
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=99.02 E-value=5.8e-10 Score=88.76 Aligned_cols=68 Identities=31% Similarity=0.551 Sum_probs=57.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc------cccccccEEEEeeeeeecCCCCCCChhhhhCCeEE
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR------AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLL 77 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~------~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~L 77 (98)
++|+| ||+ ++++++|+|||+||+++|+.+|+-|. .|.|+.|.|.| +|. ..+
T Consensus 2 v~i~I---dG~--~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV-~G~-----------------~~~ 58 (819)
T PRK08493 2 ITITI---NGK--ECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEA-DGK-----------------RVY 58 (819)
T ss_pred eEEEE---CCE--EEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEE-CCE-----------------Eec
Confidence 45666 896 78999999999999999999999885 58899999988 322 267
Q ss_pred eeeeEECCCeEEEecCc
Q 034300 78 TCISYPTSDCVIQSHKE 94 (98)
Q Consensus 78 aCq~~~~~d~~i~~~~~ 94 (98)
||++.+..+|+|++.++
T Consensus 59 AC~t~v~dGM~V~T~s~ 75 (819)
T PRK08493 59 SCNTKAKEGMNILTNTP 75 (819)
T ss_pred cccCCCCCCCEEEecCH
Confidence 99999999999998764
No 31
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=98.99 E-value=5.9e-10 Score=86.11 Aligned_cols=65 Identities=26% Similarity=0.506 Sum_probs=56.5
Q ss_pred CCCEEEEEeCCCchHHHHHHHcCCCccCCCc------cccccccEEEEeeeeeecCCCCCCChhhhhCC-eEEeeeeEEC
Q 034300 12 NGEEHEFEAQEDQYILDAAEEAGVDLPYSCR------AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAG-YLLTCISYPT 84 (98)
Q Consensus 12 ~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~------~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~-~~LaCq~~~~ 84 (98)
||+ ++++++|+|||+|++++||.||+.|+ .|.|..|.|.|. |. .. .+.||++.+.
T Consensus 4 dg~--~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~-g~---------------~~~~~~aC~~~~~ 65 (603)
T TIGR01973 4 DGK--ELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVE-KF---------------PDKPVASCATPVT 65 (603)
T ss_pred CCE--EEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEEC-CC---------------CCCcccccCCCCC
Confidence 885 89999999999999999999999998 799999999983 21 11 4779999999
Q ss_pred CCeEEEecCc
Q 034300 85 SDCVIQSHKE 94 (98)
Q Consensus 85 ~d~~i~~~~~ 94 (98)
++|+|.+.++
T Consensus 66 ~gm~v~t~~~ 75 (603)
T TIGR01973 66 DGMKISTNSE 75 (603)
T ss_pred CCCEEEeCCH
Confidence 9999998764
No 32
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=98.98 E-value=1.1e-09 Score=76.52 Aligned_cols=52 Identities=23% Similarity=0.526 Sum_probs=42.1
Q ss_pred EEEEEeCCCchHHHHHHHc------CCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeEEC
Q 034300 15 EHEFEAQEDQYILDAAEEA------GVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPT 84 (98)
Q Consensus 15 ~~~i~~~~g~tlL~a~~~~------gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~~~ 84 (98)
.++|+++++.|+|++|..- .+.+.++|+.|.||+|.++| +|. -+|||++.+.
T Consensus 25 ~y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~ 82 (239)
T PRK13552 25 TYQLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVI-NGR-----------------PTLACRTLTS 82 (239)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEE-CCe-----------------EhhhhhccHh
Confidence 4677778999999999763 26688999999999999998 433 4888988775
No 33
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=98.98 E-value=8.9e-10 Score=87.20 Aligned_cols=70 Identities=24% Similarity=0.499 Sum_probs=58.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc------cccccccEEEEeeeeeecCCCCCCChhhhhCCeEE
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR------AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLL 77 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~------~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~L 77 (98)
++|+| ||+ ++++++|+|||+|++++|+.||+.|. .|.|..|.|.| +|. ...+.
T Consensus 2 ~~~~i---dg~--~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v-~~~---------------~~~~~ 60 (776)
T PRK09129 2 VEIEI---DGK--KVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEV-EKA---------------PKPLP 60 (776)
T ss_pred eEEEE---CCE--EEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEE-CCC---------------CCcCc
Confidence 45666 896 89999999999999999999999999 58899999998 221 12467
Q ss_pred eeeeEECCCeEEEecCc
Q 034300 78 TCISYPTSDCVIQSHKE 94 (98)
Q Consensus 78 aCq~~~~~d~~i~~~~~ 94 (98)
||.+.+..+|+|.+.++
T Consensus 61 aC~~~~~~gm~v~t~~~ 77 (776)
T PRK09129 61 ACATPVTDGMKVFTRSE 77 (776)
T ss_pred ccCCCCCCCCEEEcCCH
Confidence 99999999999999765
No 34
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.93 E-value=1.5e-09 Score=76.12 Aligned_cols=59 Identities=19% Similarity=0.336 Sum_probs=44.3
Q ss_pred CEEEEEeCCCchHHHHHHHc-------------CCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeee
Q 034300 14 EEHEFEAQEDQYILDAAEEA-------------GVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCI 80 (98)
Q Consensus 14 ~~~~i~~~~g~tlL~a~~~~-------------gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq 80 (98)
++++|++.++.|+|++|..- -+.+.++|+.|.||+|.++| +|. -+|||+
T Consensus 23 q~y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~I-NG~-----------------p~LAC~ 84 (249)
T PRK08640 23 EEFEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVI-NGK-----------------PRQACT 84 (249)
T ss_pred EEEEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEE-CCc-----------------cchhhh
Confidence 34677777999999999753 15578999999999999998 433 378888
Q ss_pred eEEC---CCeEEE
Q 034300 81 SYPT---SDCVIQ 90 (98)
Q Consensus 81 ~~~~---~d~~i~ 90 (98)
+.+. +.++|+
T Consensus 85 t~v~~~~~~i~ie 97 (249)
T PRK08640 85 ALIDQLEQPIRLE 97 (249)
T ss_pred ChHHHcCCcEEEE
Confidence 8773 344554
No 35
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.92 E-value=2.1e-09 Score=85.51 Aligned_cols=69 Identities=23% Similarity=0.527 Sum_probs=58.2
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc------cccccccEEEEeeeeeecCCCCCCChhhhhCCeE
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR------AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYL 76 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~------~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~ 76 (98)
|++|+| ||+ ++++++|+|||+|++++||.||+.|. .|.|..|.|.| +|. ...+
T Consensus 4 ~v~~~i---dg~--~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev-~g~---------------~~~~ 62 (797)
T PRK07860 4 LVTLTI---DGV--EVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEV-EGQ---------------RKPQ 62 (797)
T ss_pred eEEEEE---CCE--EEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEE-CCC---------------cccc
Confidence 445555 896 89999999999999999999999998 68999999998 221 2246
Q ss_pred EeeeeEECCCeEEEec
Q 034300 77 LTCISYPTSDCVIQSH 92 (98)
Q Consensus 77 LaCq~~~~~d~~i~~~ 92 (98)
.||.+.+..+|+|++.
T Consensus 63 ~aC~t~v~~gm~V~t~ 78 (797)
T PRK07860 63 ASCTTTVTDGMVVKTQ 78 (797)
T ss_pred cccCCCCCCCcEEEeC
Confidence 6999999999999986
No 36
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=98.92 E-value=7.1e-09 Score=71.27 Aligned_cols=52 Identities=27% Similarity=0.508 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHc-CCC-ccCCCccccccccEEEEeeee
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEA-GVD-LPYSCRAGACSTCAGKLVSGS 57 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~~G~ 57 (98)
.+|+| ..||+.++++++++.+||++|+++ ++. .+++|+.|.||.|.|. ++|.
T Consensus 50 ~~i~~-~VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTVl-VdG~ 103 (217)
T PRK11433 50 SPVTL-KVNGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVL-VNGR 103 (217)
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEEE-ECCE
Confidence 34665 469988889999999999999975 554 8899999999999994 4664
No 37
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=98.89 E-value=1.8e-09 Score=67.31 Aligned_cols=53 Identities=30% Similarity=0.595 Sum_probs=40.5
Q ss_pred EEEEEeCCCchHHHHHHH------cCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeEECC
Q 034300 15 EHEFEAQEDQYILDAAEE------AGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTS 85 (98)
Q Consensus 15 ~~~i~~~~g~tlL~a~~~------~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~~~~ 85 (98)
.++++++++.|+|++|.. .-+...++|+.|.||+|.++| .|. -+|||.+.+.+
T Consensus 20 ~y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~~ 78 (110)
T PF13085_consen 20 EYEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRI-NGR-----------------PRLACKTQVDD 78 (110)
T ss_dssp EEEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEE-TTE-----------------EEEGGGSBGGG
T ss_pred EEEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEE-CCc-----------------eecceeeEchh
Confidence 467889999999999965 256689999999999999998 333 48999988764
No 38
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.86 E-value=6.2e-09 Score=73.17 Aligned_cols=53 Identities=23% Similarity=0.615 Sum_probs=42.9
Q ss_pred CEEEEEeCCCchHHHHHHHcCC------CccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeEEC
Q 034300 14 EEHEFEAQEDQYILDAAEEAGV------DLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPT 84 (98)
Q Consensus 14 ~~~~i~~~~g~tlL~a~~~~gi------~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~~~ 84 (98)
+.++++++++.|||++|+..+. .+.++|+.|.||+|.+.| +|. -+|||.+.+.
T Consensus 20 q~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~I-nG~-----------------p~laC~t~~~ 78 (251)
T PRK12386 20 QDYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEI-NGR-----------------PRLMCMTRMS 78 (251)
T ss_pred EEEEEeCCCCCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEE-Ccc-----------------EeccHHhHHH
Confidence 4577888899999999998664 678999999999999998 433 3778877653
No 39
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.83 E-value=4.1e-09 Score=73.76 Aligned_cols=73 Identities=22% Similarity=0.396 Sum_probs=50.2
Q ss_pred CceEEEEEEcCCC--------CEEEEEeCCCchHHHHHHHc------CCCccCCCccccccccEEEEeeeeeecCCCCCC
Q 034300 1 MAVYKIKLIGPNG--------EEHEFEAQEDQYILDAAEEA------GVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFL 66 (98)
Q Consensus 1 M~~~~v~i~~~~g--------~~~~i~~~~g~tlL~a~~~~------gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l 66 (98)
|.+++|+|...+. +.+.++++++.|||++|... .+...++|+.|.||+|.++| +|.
T Consensus 4 ~~~v~~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~I-nG~--------- 73 (244)
T PRK12385 4 MKNLKIEVLRYNPEVDTEPHSQTYEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNV--------- 73 (244)
T ss_pred CcEEEEEEEeeCCCCCCCceeEEEEeeCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceE-Ccc---------
Confidence 4455666544332 34567778999999999553 34567899999999999998 332
Q ss_pred ChhhhhCCeEEeeeeEEC---CCeEEEe
Q 034300 67 DDNQMEAGYLLTCISYPT---SDCVIQS 91 (98)
Q Consensus 67 ~~~~~~~~~~LaCq~~~~---~d~~i~~ 91 (98)
.+|||++.+. +.++|+-
T Consensus 74 --------~~laC~t~~~~~~~~~~ieP 93 (244)
T PRK12385 74 --------PKLACKTFLRDYTGGMKVEA 93 (244)
T ss_pred --------ChhhHhhHHHHcCCCeEEee
Confidence 2678877765 2555553
No 40
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=98.82 E-value=1.2e-08 Score=67.23 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=45.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC-ccCCCccccccccEEEEeeee
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD-LPYSCRAGACSTCAGKLVSGS 57 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~-i~~~C~~G~Cg~C~v~v~~G~ 57 (98)
..|+| ..||+.++++++++++||+.|++.|+. ...+|+.|.||+|.|.| +|.
T Consensus 7 ~~i~~-~vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlv-dg~ 59 (159)
T PRK09908 7 ITIEC-TINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLV-DGT 59 (159)
T ss_pred eeEEE-EECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEE-CCc
Confidence 45666 569998899999999999999998875 99999999999999997 554
No 41
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.81 E-value=1.8e-08 Score=73.15 Aligned_cols=40 Identities=23% Similarity=0.471 Sum_probs=35.1
Q ss_pred CEEEEEeCCCchHHHHHHHcCCCcc------CCCccccccccEEEE
Q 034300 14 EEHEFEAQEDQYILDAAEEAGVDLP------YSCRAGACSTCAGKL 53 (98)
Q Consensus 14 ~~~~i~~~~g~tlL~a~~~~gi~i~------~~C~~G~Cg~C~v~v 53 (98)
+.+++++++|+|||++|.+.++.++ .+|+.|.||+|.|+|
T Consensus 19 ~~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i 64 (329)
T PRK12577 19 QTYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI 64 (329)
T ss_pred EEEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE
Confidence 3578899999999999999998874 568889999999998
No 42
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=98.76 E-value=1.2e-08 Score=71.64 Aligned_cols=57 Identities=23% Similarity=0.358 Sum_probs=41.3
Q ss_pred EEEE-eCCCchHHHHHHHc----------CCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeEEC
Q 034300 16 HEFE-AQEDQYILDAAEEA----------GVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPT 84 (98)
Q Consensus 16 ~~i~-~~~g~tlL~a~~~~----------gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~~~ 84 (98)
++|+ +.++.|+|++|..- .+.+.++|+.|.||+|.++| .|.+.... .-+|||++.+.
T Consensus 22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~I-NG~p~~~~-----------~~~LAC~t~~~ 89 (250)
T PRK07570 22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVI-NGRPHGPD-----------RGTTTCQLHMR 89 (250)
T ss_pred EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEE-CCccCCCC-----------cccchhhhhhh
Confidence 4555 55899999999742 36689999999999999997 55542211 12788887753
No 43
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=98.73 E-value=2.8e-08 Score=78.21 Aligned_cols=73 Identities=29% Similarity=0.567 Sum_probs=57.0
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc------cccccccEEEEeeeeeecCCCCCCChhhhhCC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR------AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAG 74 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~------~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~ 74 (98)
|..+.|++ ..||+ ++++++|+|||+++.++||.||+.|. -++|.+|.|.+ +|.
T Consensus 1 m~~~~i~v-tidg~--~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEi-dG~----------------- 59 (978)
T COG3383 1 MAEKMITV-TIDGR--SIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEI-DGK----------------- 59 (978)
T ss_pred CCceeEEE-EECCe--EEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEe-cCc-----------------
Confidence 44333443 34886 89999999999999999999999998 36899998884 443
Q ss_pred eEEeeeeEECCCeEEEecCc
Q 034300 75 YLLTCISYPTSDCVIQSHKE 94 (98)
Q Consensus 75 ~~LaCq~~~~~d~~i~~~~~ 94 (98)
..-||.+.+..+++|.+.++
T Consensus 60 l~rsCsT~v~dGm~v~t~s~ 79 (978)
T COG3383 60 LVRSCSTPVEDGMVVRTNSE 79 (978)
T ss_pred eeccccccccCCcEEecccH
Confidence 35589888888888887654
No 44
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.71 E-value=3.6e-08 Score=68.73 Aligned_cols=57 Identities=25% Similarity=0.486 Sum_probs=41.2
Q ss_pred EEEEeCC-CchHHHHHHHc-----CCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeEEC---CC
Q 034300 16 HEFEAQE-DQYILDAAEEA-----GVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPT---SD 86 (98)
Q Consensus 16 ~~i~~~~-g~tlL~a~~~~-----gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~~~---~d 86 (98)
++|++.+ +.|+|++|..- .+.+.++|+.|.||+|.++| +|. -+|||++++. +.
T Consensus 25 y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~i-NG~-----------------~~LaC~t~~~~~~~~ 86 (235)
T PRK12575 25 YEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNI-NGR-----------------NGLACLTNMQALPRE 86 (235)
T ss_pred EEecCCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEE-CCe-----------------EcchhhCcHhHcCCC
Confidence 4444444 56999999753 35578999999999999998 433 5889988876 44
Q ss_pred eEEE
Q 034300 87 CVIQ 90 (98)
Q Consensus 87 ~~i~ 90 (98)
++|+
T Consensus 87 i~ie 90 (235)
T PRK12575 87 IVLR 90 (235)
T ss_pred EEEe
Confidence 5554
No 45
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.67 E-value=9.6e-08 Score=68.07 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=40.5
Q ss_pred eEEEEEEcCCC------CEEEEEeCCCchHHHHHHHcCCCc------cCCCccccccccEEEEeeee
Q 034300 3 VYKIKLIGPNG------EEHEFEAQEDQYILDAAEEAGVDL------PYSCRAGACSTCAGKLVSGS 57 (98)
Q Consensus 3 ~~~v~i~~~~g------~~~~i~~~~g~tlL~a~~~~gi~i------~~~C~~G~Cg~C~v~v~~G~ 57 (98)
+++++|+..+. +.+++++++|+|||++|.+.+..+ .++|+.|.||+|.+.| +|.
T Consensus 8 ~~~~~i~R~~~~~~~~~~~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I-NG~ 73 (279)
T PRK12576 8 EVIFKVKRYDPEKGSWWQEYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI-NGE 73 (279)
T ss_pred EEEEEEEecCCCCCCeEEEEEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEE-CCc
Confidence 34555544332 346789999999999999976543 5889999999999998 443
No 46
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=98.63 E-value=7.1e-08 Score=62.93 Aligned_cols=47 Identities=21% Similarity=0.484 Sum_probs=41.0
Q ss_pred cCCCCEEEEEeCCCchHHHHHHHc-CCC-ccCCCccccccccEEEEeeee
Q 034300 10 GPNGEEHEFEAQEDQYILDAAEEA-GVD-LPYSCRAGACSTCAGKLVSGS 57 (98)
Q Consensus 10 ~~~g~~~~i~~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~~G~ 57 (98)
..||+.++++++++++||+.|++. |+. ...+|+.|.||+|.|.| +|.
T Consensus 5 ~vNG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv-dg~ 53 (148)
T TIGR03193 5 TVNGRWREDAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV-DGR 53 (148)
T ss_pred EECCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE-CCe
Confidence 348988899999999999999974 765 99999999999999998 554
No 47
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=98.63 E-value=8.3e-08 Score=66.79 Aligned_cols=53 Identities=28% Similarity=0.481 Sum_probs=40.9
Q ss_pred EEEEEeCCCchHHHHHHH------cCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeEECC
Q 034300 15 EHEFEAQEDQYILDAAEE------AGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTS 85 (98)
Q Consensus 15 ~~~i~~~~g~tlL~a~~~------~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~~~~ 85 (98)
+++++..+|.|+|++|.. ..+.+.++|+.|+||+|.+.| .|. -+|||.+.+.+
T Consensus 21 ~yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~I-NG~-----------------prLAC~t~~~~ 79 (234)
T COG0479 21 TYEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNI-NGK-----------------PRLACKTLMKD 79 (234)
T ss_pred EEEecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEE-CCc-----------------cccchhchhhh
Confidence 355666699999999975 245689999999999999997 333 37888877654
No 48
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=98.57 E-value=1.1e-07 Score=67.62 Aligned_cols=51 Identities=24% Similarity=0.559 Sum_probs=39.0
Q ss_pred EEEEeCC-CchHHHHHHHc------CCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeEEC
Q 034300 16 HEFEAQE-DQYILDAAEEA------GVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPT 84 (98)
Q Consensus 16 ~~i~~~~-g~tlL~a~~~~------gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~~~ 84 (98)
++|++.+ +.|+|++|..- .+.+.++|+.|.||+|.++| +|. -+|||++++.
T Consensus 64 y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~I-NG~-----------------p~LAC~t~v~ 121 (276)
T PLN00129 64 YKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI-DGK-----------------NTLACLTKID 121 (276)
T ss_pred EEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEE-CCc-----------------ccccccccHh
Confidence 3455444 79999999762 25578999999999999998 333 4889988875
No 49
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=98.57 E-value=3.6e-08 Score=67.85 Aligned_cols=43 Identities=33% Similarity=0.582 Sum_probs=34.9
Q ss_pred CEEEEEeCCCchHHHHHHHcC------CCccCCCccccccccEEEEeeee
Q 034300 14 EEHEFEAQEDQYILDAAEEAG------VDLPYSCRAGACSTCAGKLVSGS 57 (98)
Q Consensus 14 ~~~~i~~~~g~tlL~a~~~~g------i~i~~~C~~G~Cg~C~v~v~~G~ 57 (98)
+.+++++++|+|||++|.+.+ +....+|+.|.||+|.|+| +|.
T Consensus 15 ~~~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v-nG~ 63 (220)
T TIGR00384 15 QSYEVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV-NGK 63 (220)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEE-CCE
Confidence 346778889999999998754 4467899999999999986 443
No 50
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=98.55 E-value=3.1e-07 Score=60.27 Aligned_cols=53 Identities=23% Similarity=0.505 Sum_probs=43.9
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCchHHHHHHH-cCCC-ccCCCccccccccEEEEeeeee
Q 034300 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEE-AGVD-LPYSCRAGACSTCAGKLVSGSV 58 (98)
Q Consensus 2 ~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~-~gi~-i~~~C~~G~Cg~C~v~v~~G~~ 58 (98)
+.+++++ ||+.+++++.|+++||++|++ .|+. ..++|+.|.||+|.|.+ +|+.
T Consensus 2 ~~i~ltv---NG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlv-DG~~ 56 (156)
T COG2080 2 MPITLTV---NGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLV-DGEA 56 (156)
T ss_pred CcEEEEE---CCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEE-CCeE
Confidence 4445555 999999999999999999995 5666 89999999999999986 6643
No 51
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.50 E-value=1.8e-07 Score=64.94 Aligned_cols=42 Identities=26% Similarity=0.401 Sum_probs=34.8
Q ss_pred EEEEEeC-CCchHHHHHHHcC-CC-----ccCCCccccccccEEEEeeee
Q 034300 15 EHEFEAQ-EDQYILDAAEEAG-VD-----LPYSCRAGACSTCAGKLVSGS 57 (98)
Q Consensus 15 ~~~i~~~-~g~tlL~a~~~~g-i~-----i~~~C~~G~Cg~C~v~v~~G~ 57 (98)
.++++++ +|+|||++|.+.+ .. ..++|+.|.||+|.|.| +|.
T Consensus 19 ~~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v-nG~ 67 (232)
T PRK05950 19 TYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI-NGK 67 (232)
T ss_pred EEEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE-CCc
Confidence 4678888 9999999999987 32 36889999999999998 443
No 52
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=98.42 E-value=5.8e-07 Score=58.88 Aligned_cols=50 Identities=22% Similarity=0.444 Sum_probs=42.3
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHc-CCC-ccCCCccccccccEEEEeeee
Q 034300 6 IKLIGPNGEEHEFEAQEDQYILDAAEEA-GVD-LPYSCRAGACSTCAGKLVSGS 57 (98)
Q Consensus 6 v~i~~~~g~~~~i~~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~~G~ 57 (98)
|+| ..||+.+++.++++++|++.|++. |+. .+.+|+.|.||.|.|.| +|.
T Consensus 4 i~f-~vNG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlv-dG~ 55 (151)
T TIGR03198 4 FRF-TVNGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI-DGK 55 (151)
T ss_pred EEE-EECCEEEEeecCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEE-CCc
Confidence 444 459998889999999999999974 776 88999999999999998 543
No 53
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=98.06 E-value=5.4e-06 Score=62.90 Aligned_cols=44 Identities=25% Similarity=0.484 Sum_probs=39.4
Q ss_pred cCCCCEEEE-EeCCCchHHHHHHHc-CCC-ccCCCccccccccEEEE
Q 034300 10 GPNGEEHEF-EAQEDQYILDAAEEA-GVD-LPYSCRAGACSTCAGKL 53 (98)
Q Consensus 10 ~~~g~~~~i-~~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v 53 (98)
..||+.+++ +++++++||+.++++ |+. ...+|+.|.||+|.|.|
T Consensus 4 ~~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~ 50 (467)
T TIGR02963 4 FLNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVV 50 (467)
T ss_pred EECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEE
Confidence 348988888 699999999999974 876 99999999999999998
No 54
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=97.99 E-value=1.7e-05 Score=64.71 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=41.8
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHcCCC-ccCC-CccccccccEEEEeeee
Q 034300 6 IKLIGPNGEEHEFEAQEDQYILDAAEEAGVD-LPYS-CRAGACSTCAGKLVSGS 57 (98)
Q Consensus 6 v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~-i~~~-C~~G~Cg~C~v~v~~G~ 57 (98)
|+| ..||+.++++++++++||+.|++.|+. ...+ |+.|.||+|.|.| +|.
T Consensus 3 i~~-~vNg~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~-dg~ 54 (956)
T PRK09800 3 IHF-TLNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIF-NGN 54 (956)
T ss_pred EEE-EECCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEE-CCe
Confidence 444 449998899999999999999998776 6666 8899999999997 554
No 55
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=97.92 E-value=1.7e-05 Score=60.70 Aligned_cols=66 Identities=20% Similarity=0.404 Sum_probs=51.8
Q ss_pred CCCCEEEEEeCCCchHHHHHHHcCCCccCCCc------cccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeEEC
Q 034300 11 PNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR------AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPT 84 (98)
Q Consensus 11 ~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~------~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~~~ 84 (98)
.||+ .+.+++|.|+|+|+...|++||..|+ .|.|..|.|.|.. .+.-+-+|-..+.
T Consensus 37 vd~~--~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek----------------spkpva~campvm 98 (708)
T KOG2282|consen 37 VDDQ--SVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK----------------SPKPVAACAMPVM 98 (708)
T ss_pred ECCe--eEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEecc----------------CCCcchhhccccc
Confidence 3674 89999999999999999999999998 5788888887743 2234667777777
Q ss_pred CCeEEEecCc
Q 034300 85 SDCVIQSHKE 94 (98)
Q Consensus 85 ~d~~i~~~~~ 94 (98)
..+.|.+.++
T Consensus 99 ~g~~iktns~ 108 (708)
T KOG2282|consen 99 KGWKIKTNSD 108 (708)
T ss_pred CCceeecCch
Confidence 7777776553
No 56
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=97.70 E-value=6.4e-05 Score=61.38 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=40.3
Q ss_pred CCCCEEEEEeCCCchHHHHHHHcCCC-ccC-CCccccccccEEEEeeee
Q 034300 11 PNGEEHEFEAQEDQYILDAAEEAGVD-LPY-SCRAGACSTCAGKLVSGS 57 (98)
Q Consensus 11 ~~g~~~~i~~~~g~tlL~a~~~~gi~-i~~-~C~~G~Cg~C~v~v~~G~ 57 (98)
.||+.++++++++++||+.|++.|+. +.. +|+.|.||+|.|.| +|.
T Consensus 3 ~Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~~g~CGaCtv~~-dg~ 50 (951)
T TIGR03313 3 LNGAPQTLECKLGENVQTLLFNMGMHSVRNSDDGFGFAGSDAILF-NGV 50 (951)
T ss_pred ECCEEEEEecCCCCCHHHHHHHCCCCCCcCCCCCcccCCCCEEEE-CCe
Confidence 38988899999999999999998876 777 69999999999987 554
No 57
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=97.66 E-value=8e-05 Score=60.15 Aligned_cols=43 Identities=28% Similarity=0.633 Sum_probs=37.8
Q ss_pred CCCEEEEEeCCCchHHHHHHH-cCCC-ccCCCccccccccEEEEeeee
Q 034300 12 NGEEHEFEAQEDQYILDAAEE-AGVD-LPYSCRAGACSTCAGKLVSGS 57 (98)
Q Consensus 12 ~g~~~~i~~~~g~tlL~a~~~-~gi~-i~~~C~~G~Cg~C~v~v~~G~ 57 (98)
||. +++++++++||+.|++ .|+. ...+|+.|.||+|.|.| +|.
T Consensus 6 ng~--~~~~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~-dg~ 50 (848)
T TIGR03311 6 NGR--EVDVNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV-NGK 50 (848)
T ss_pred CCE--EeeCCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE-CCe
Confidence 785 7889999999999997 4875 99999999999999998 554
No 58
>PLN00192 aldehyde oxidase
Probab=97.66 E-value=7.7e-05 Score=62.75 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=42.1
Q ss_pred EEEEEcCCCCEEEE-EeCCCchHHHHHHHc-CCC-ccCCCccccccccEEEEe
Q 034300 5 KIKLIGPNGEEHEF-EAQEDQYILDAAEEA-GVD-LPYSCRAGACSTCAGKLV 54 (98)
Q Consensus 5 ~v~i~~~~g~~~~i-~~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~ 54 (98)
.|+| ..||+.+++ +++++.|||+.|++. |+. ...+|+.|.||.|.|.|-
T Consensus 5 ~i~~-~vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v~ 56 (1344)
T PLN00192 5 SLVF-AVNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLLS 56 (1344)
T ss_pred eEEE-EECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEEe
Confidence 4555 569988888 699999999999974 876 999999999999999983
No 59
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=97.53 E-value=0.00012 Score=61.56 Aligned_cols=48 Identities=19% Similarity=0.431 Sum_probs=39.8
Q ss_pred EEEEcCCCCEE-EEEeCCCchHHHHHHHc-CCC-ccCCCccccccccEEEEe
Q 034300 6 IKLIGPNGEEH-EFEAQEDQYILDAAEEA-GVD-LPYSCRAGACSTCAGKLV 54 (98)
Q Consensus 6 v~i~~~~g~~~-~i~~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~ 54 (98)
|+| ..||+.+ ..++++++|||+.|++. |+. ...+|+.|.||+|.|.|-
T Consensus 3 ~~~-~~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~ 53 (1330)
T TIGR02969 3 LLF-YVNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMIS 53 (1330)
T ss_pred EEE-EECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEEC
Confidence 444 4489865 45899999999999974 876 999999999999999983
No 60
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.90 E-value=0.0026 Score=52.28 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=53.9
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCcc-----C------CCccccccccEEEEeeeeeecCCCCCCChhhhhC
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLP-----Y------SCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEA 73 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~-----~------~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~ 73 (98)
.|+| ..||+ .+++.+|+||..||+.+|+.+- + -|..|.|--|.|.|-.|.. ..
T Consensus 12 ~~~~-~~dg~--~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~-------------~~ 75 (985)
T TIGR01372 12 PLRF-TFDGK--SYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQ-------------RE 75 (985)
T ss_pred eEEE-EECCE--EeecCCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcC-------------CC
Confidence 3555 44896 8999999999999999997632 1 2767778999999933210 01
Q ss_pred CeEEeeeeEECCCeEEEecC
Q 034300 74 GYLLTCISYPTSDCVIQSHK 93 (98)
Q Consensus 74 ~~~LaCq~~~~~d~~i~~~~ 93 (98)
.-+.||++.+..+|.|+...
T Consensus 76 ~~~~ac~~~~~~gm~~~~~~ 95 (985)
T TIGR01372 76 PNTRATTQELYDGLVATSQN 95 (985)
T ss_pred CCccceeEEcccCCEEeccc
Confidence 13569999999999998754
No 61
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0027 Score=47.43 Aligned_cols=50 Identities=20% Similarity=0.442 Sum_probs=39.5
Q ss_pred eEEEEEEcCCCCEEEE-EeCCCchHHHHHH-HcCCC-ccCCCccccccccEEEE
Q 034300 3 VYKIKLIGPNGEEHEF-EAQEDQYILDAAE-EAGVD-LPYSCRAGACSTCAGKL 53 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i-~~~~g~tlL~a~~-~~gi~-i~~~C~~G~Cg~C~v~v 53 (98)
+.+|.|+ .||+.+.+ .++|..||||.|+ +.++. -.-+|..|-||.|.|-|
T Consensus 6 ~~~irf~-lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlV 58 (493)
T COG4630 6 RNTIRFL-LNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLV 58 (493)
T ss_pred cceeEEE-ecCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEE
Confidence 3567773 47765544 6889999999998 56666 78899999999999876
No 62
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=96.73 E-value=0.0023 Score=44.46 Aligned_cols=52 Identities=27% Similarity=0.470 Sum_probs=36.7
Q ss_pred EEEEeC-CCchHHHHHHHc--C----CCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeEECC
Q 034300 16 HEFEAQ-EDQYILDAAEEA--G----VDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTS 85 (98)
Q Consensus 16 ~~i~~~-~g~tlL~a~~~~--g----i~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~~~~ 85 (98)
++|+.. -|--+|||+.+- . +.+..+|+.|+||+|.+.|- ..--|||.+.+..
T Consensus 68 y~vDL~~CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~------------------G~NtLACi~kId~ 126 (288)
T KOG3049|consen 68 YEVDLNDCGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIN------------------GTNTLACICKIDQ 126 (288)
T ss_pred eeecHHhcchHHHHHHHHhhcccCCceehhhhhhccccccceeccC------------------CCceeEEEEeecc
Confidence 444443 377899999763 2 33678999999999999872 2246777777654
No 63
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.0065 Score=50.52 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=37.2
Q ss_pred cCCCCEEEE-EeCCCchHHHHHHH-cCCC-ccCCCccccccccEEEEee
Q 034300 10 GPNGEEHEF-EAQEDQYILDAAEE-AGVD-LPYSCRAGACSTCAGKLVS 55 (98)
Q Consensus 10 ~~~g~~~~i-~~~~g~tlL~a~~~-~gi~-i~~~C~~G~Cg~C~v~v~~ 55 (98)
..||+..++ .++|+.||+..++. .++. ...+|+.|.||+|.|-+-.
T Consensus 6 ~VNG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls~ 54 (1257)
T KOG0430|consen 6 AINGKRVEVELLPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLSK 54 (1257)
T ss_pred EECCEEeeEecCCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEec
Confidence 458876544 46889999999986 4665 8999999999999998754
No 64
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=95.43 E-value=0.035 Score=32.01 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=22.9
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHH
Q 034300 6 IKLIGPNGEEHEFEAQEDQYILDAAEE 32 (98)
Q Consensus 6 v~i~~~~g~~~~i~~~~g~tlL~a~~~ 32 (98)
++++.|||+...+.+.+|+|+.|++..
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~ 28 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAK 28 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHH
Confidence 345579999889999999999998865
No 65
>PLN02906 xanthine dehydrogenase
Probab=94.83 E-value=0.031 Score=47.55 Aligned_cols=32 Identities=22% Similarity=0.567 Sum_probs=28.5
Q ss_pred CchHHHHHHHcCCC-ccCCCccccccccEEEEe
Q 034300 23 DQYILDAAEEAGVD-LPYSCRAGACSTCAGKLV 54 (98)
Q Consensus 23 g~tlL~a~~~~gi~-i~~~C~~G~Cg~C~v~v~ 54 (98)
++|||+.|++.|+. ...+|+.|.||+|.|.|-
T Consensus 1 ~~~ll~~LR~~~l~g~k~gC~~g~CGaCtv~~~ 33 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKLGCGEGGCGACTVMVS 33 (1319)
T ss_pred CCcHHHHHHhCCCCCCCCCcCCCCCCCeEEEEC
Confidence 46899999987765 899999999999999984
No 66
>smart00455 RBD Raf-like Ras-binding domain.
Probab=94.46 E-value=0.11 Score=29.65 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.3
Q ss_pred EEEcCCCCEEEEEeCCCchHHHHHHH
Q 034300 7 KLIGPNGEEHEFEAQEDQYILDAAEE 32 (98)
Q Consensus 7 ~i~~~~g~~~~i~~~~g~tlL~a~~~ 32 (98)
++..|||+...+.+.||+||.|++..
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~ 28 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAK 28 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHH
Confidence 34579999889999999999998865
No 67
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=94.24 E-value=0.13 Score=29.20 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=26.6
Q ss_pred CceEEEEEEcCCCC--EEEEEeCCCchHHHHHHHcCCCc
Q 034300 1 MAVYKIKLIGPNGE--EHEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 1 M~~~~v~i~~~~g~--~~~i~~~~g~tlL~a~~~~gi~i 37 (98)
|.|++|++ +|+ ..+++++++.|+.+.+.+.+++.
T Consensus 2 ~~mm~v~v---ng~~~~~~~~~~~~~tv~~ll~~l~~~~ 37 (70)
T PRK08364 2 MLMIRVKV---IGRGIEKEIEWRKGMKVADILRAVGFNT 37 (70)
T ss_pred ceEEEEEE---eccccceEEEcCCCCcHHHHHHHcCCCC
Confidence 56777877 454 45788899999999999888753
No 68
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=93.76 E-value=0.12 Score=29.94 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=22.9
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHc
Q 034300 6 IKLIGPNGEEHEFEAQEDQYILDAAEEA 33 (98)
Q Consensus 6 v~i~~~~g~~~~i~~~~g~tlL~a~~~~ 33 (98)
|+++.||.+...+++.+|+||-||+.++
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~Ka 29 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKA 29 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHH
Confidence 4556789887789999999999988763
No 69
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=93.57 E-value=0.16 Score=29.05 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=29.8
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc--cccccccEEEEeeee
Q 034300 6 IKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR--AGACSTCAGKLVSGS 57 (98)
Q Consensus 6 v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~--~G~Cg~C~v~v~~G~ 57 (98)
+.++.|||+...+.+.+|+|+-|++... |. .=....|.++...+.
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~-------~~kr~L~~~~~~V~~~~~~ 49 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKA-------CKKRGLNPECCDVRLVGEK 49 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHH-------HHTTT--CCCEEEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHH-------HHHcCCCHHHEEEEEcCCC
Confidence 4455699998889999999999998663 22 123445677765543
No 70
>PRK07440 hypothetical protein; Provisional
Probab=93.38 E-value=0.22 Score=28.32 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=23.7
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i 37 (98)
+++|++ ||+ .++++++.||.+.+.+.+++.
T Consensus 4 ~m~i~v---NG~--~~~~~~~~tl~~lL~~l~~~~ 33 (70)
T PRK07440 4 PITLQV---NGE--TRTCSSGTSLPDLLQQLGFNP 33 (70)
T ss_pred ceEEEE---CCE--EEEcCCCCCHHHHHHHcCCCC
Confidence 445555 886 688899999999999888864
No 71
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=92.97 E-value=0.1 Score=36.20 Aligned_cols=30 Identities=23% Similarity=0.545 Sum_probs=22.4
Q ss_pred HHHHHHHcCCCc------cCCCccccccccEEEEee
Q 034300 26 ILDAAEEAGVDL------PYSCRAGACSTCAGKLVS 55 (98)
Q Consensus 26 lL~a~~~~gi~i------~~~C~~G~Cg~C~v~v~~ 55 (98)
+.++++++|++. ...||.|.||+|++.+..
T Consensus 196 v~~~l~~~Gv~~~~~~e~~m~cg~G~C~~C~~~~~~ 231 (250)
T PRK00054 196 VVEILKEKKVPAYVSLERRMKCGIGACGACVCDTET 231 (250)
T ss_pred HHHHHHHcCCcEEEEEcccccCcCcccCcCCcccCC
Confidence 555666778653 457999999999998633
No 72
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=92.52 E-value=0.34 Score=28.66 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=24.1
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
|.+++|++ ||+ ..+++++.||.+.+...+++
T Consensus 16 ~~~m~I~V---NG~--~~~~~~~~tl~~LL~~l~~~ 46 (84)
T PRK06083 16 MVLITISI---NDQ--SIQVDISSSLAQIIAQLSLP 46 (84)
T ss_pred CceEEEEE---CCe--EEEcCCCCcHHHHHHHcCCC
Confidence 45666766 886 67788999999999887764
No 73
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=92.46 E-value=0.25 Score=27.33 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=22.8
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCc
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i 37 (98)
+|++ ||+ .+++++|.||.+++.+.|++.
T Consensus 2 ~i~v---NG~--~~~~~~~~tl~~lL~~l~~~~ 29 (66)
T PRK05659 2 NIQL---NGE--PRELPDGESVAALLAREGLAG 29 (66)
T ss_pred EEEE---CCe--EEEcCCCCCHHHHHHhcCCCC
Confidence 4555 886 678899999999999988763
No 74
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=91.88 E-value=0.27 Score=34.07 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=23.8
Q ss_pred hHHHHHHHcCCCc------cCCCccccccccEEEEee
Q 034300 25 YILDAAEEAGVDL------PYSCRAGACSTCAGKLVS 55 (98)
Q Consensus 25 tlL~a~~~~gi~i------~~~C~~G~Cg~C~v~v~~ 55 (98)
.+.+++++.|++. +..|+.|.||.|+....+
T Consensus 194 ~~~~~L~~~Gv~~~~~~~~~~~~~~g~c~~c~~~~~~ 230 (246)
T cd06218 194 AVAELAAERGVPCQVSLEERMACGIGACLGCVVKTKD 230 (246)
T ss_pred HHHHHHHhcCCCEEEEecccccCccceecccEEEeec
Confidence 4555667778873 456999999999999864
No 75
>PRK01777 hypothetical protein; Validated
Probab=91.63 E-value=0.71 Score=27.95 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=27.3
Q ss_pred CceEEEEEEc--CCCC-EEEEEeCCCchHHHHHHHcCCCcc
Q 034300 1 MAVYKIKLIG--PNGE-EHEFEAQEDQYILDAAEEAGVDLP 38 (98)
Q Consensus 1 M~~~~v~i~~--~~g~-~~~i~~~~g~tlL~a~~~~gi~i~ 38 (98)
|.+++|++.. ++.. ...+++++|.|+-+++.+.||...
T Consensus 1 ~~~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~sgi~~~ 41 (95)
T PRK01777 1 MGKIRVEVVYALPERQYLQRLTLQEGATVEEAIRASGLLEL 41 (95)
T ss_pred CCeeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHcCCCcc
Confidence 5566666543 3322 246889999999999999999654
No 76
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=91.01 E-value=0.52 Score=27.27 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=29.7
Q ss_pred EEcCCCCEEEEEeCCCchHHHHHHH----cCCCccCCCccccccccEEEEeeee
Q 034300 8 LIGPNGEEHEFEAQEDQYILDAAEE----AGVDLPYSCRAGACSTCAGKLVSGS 57 (98)
Q Consensus 8 i~~~~g~~~~i~~~~g~tlL~a~~~----~gi~i~~~C~~G~Cg~C~v~v~~G~ 57 (98)
++.|||+...+.+.+|+||-|++.+ .|+. -..|.+....++
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~---------~~~~~vf~~g~~ 48 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGIN---------YAAVDLFLVGGD 48 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCC---------hhHEEEEEecCC
Confidence 3479999888999999999888765 3443 344677776544
No 77
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=90.36 E-value=0.55 Score=25.79 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=24.8
Q ss_pred EEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCC
Q 034300 7 KLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSC 41 (98)
Q Consensus 7 ~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C 41 (98)
++..|+|+ ..+++.|.|.+|+|..-+-.+...+
T Consensus 2 ~v~lpdG~--~~~~~~g~T~~d~A~~I~~~l~~~~ 34 (60)
T PF02824_consen 2 RVYLPDGS--IKELPEGSTVLDVAYSIHSSLAKRA 34 (60)
T ss_dssp EEEETTSC--EEEEETTBBHHHHHHHHSHHHHHCE
T ss_pred EEECCCCC--eeeCCCCCCHHHHHHHHCHHHHhhe
Confidence 34458997 6779999999999988765555444
No 78
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=89.88 E-value=0.3 Score=33.86 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=22.0
Q ss_pred HHHHHHHcCCCc------cCCCccccccccEEEE
Q 034300 26 ILDAAEEAGVDL------PYSCRAGACSTCAGKL 53 (98)
Q Consensus 26 lL~a~~~~gi~i------~~~C~~G~Cg~C~v~v 53 (98)
+.+.+++.|++. .-.||.|.|+.|.++.
T Consensus 195 ~~~~l~~~Gv~~~~s~e~~m~Cg~G~C~~C~~~~ 228 (248)
T cd06219 195 VSELTRPYGIPTVVSLNPIMVDGTGMCGACRVTV 228 (248)
T ss_pred HHHHHHHcCCCEEEEecccccCccceeeeEEEEe
Confidence 456666778873 4569999999999985
No 79
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=89.25 E-value=0.91 Score=25.23 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=22.9
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCcc
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLP 38 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~ 38 (98)
+|++ ||+ ..+++++.||.+.+...+++..
T Consensus 2 ~i~v---NG~--~~~~~~~~tl~~ll~~l~~~~~ 30 (65)
T PRK05863 2 IVVV---NEE--QVEVDEQTTVAALLDSLGFPEK 30 (65)
T ss_pred EEEE---CCE--EEEcCCCCcHHHHHHHcCCCCC
Confidence 4555 886 6778899999999999888643
No 80
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=88.96 E-value=0.84 Score=26.63 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=21.0
Q ss_pred EcCCCCEEEEEeCCCchHHHHHHH
Q 034300 9 IGPNGEEHEFEAQEDQYILDAAEE 32 (98)
Q Consensus 9 ~~~~g~~~~i~~~~g~tlL~a~~~ 32 (98)
..|||+...+.+.+|+|++|.|..
T Consensus 5 ~lPn~~~~~v~vrp~~tv~dvLe~ 28 (77)
T cd01818 5 CLPDNQPVLTYLRPGMSVEDFLES 28 (77)
T ss_pred ECCCCceEEEEECCCCCHHHHHHH
Confidence 468999889999999999998865
No 81
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=88.81 E-value=0.25 Score=34.38 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=21.8
Q ss_pred hHHHHHHHcCCC---cc------CCCccccccccEEE
Q 034300 25 YILDAAEEAGVD---LP------YSCRAGACSTCAGK 52 (98)
Q Consensus 25 tlL~a~~~~gi~---i~------~~C~~G~Cg~C~v~ 52 (98)
.+.++|++.|++ +. -.|+.|.||+|++.
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 204 FVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHcCCCHHHEEEehhhccccCCccccCcccC
Confidence 466777788886 33 45889999999987
No 82
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=88.33 E-value=0.69 Score=31.63 Aligned_cols=30 Identities=27% Similarity=0.559 Sum_probs=22.5
Q ss_pred hHHHHHHHcCCC------ccCCCccccccccEEEEe
Q 034300 25 YILDAAEEAGVD------LPYSCRAGACSTCAGKLV 54 (98)
Q Consensus 25 tlL~a~~~~gi~------i~~~C~~G~Cg~C~v~v~ 54 (98)
.+.+++++.|++ --..|+.|.||+|++...
T Consensus 181 ~~~~~L~~~g~~~~i~~e~f~~cg~g~C~~C~v~~~ 216 (233)
T cd06220 181 KVLEILDERGVRAQFSLERYMKCGIGICGSCCIDPT 216 (233)
T ss_pred HHHHHHHhcCCcEEEEecccccCcCCCcCccEeccC
Confidence 466667777774 135699999999999974
No 83
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=87.93 E-value=0.26 Score=25.18 Aligned_cols=18 Identities=33% Similarity=0.855 Sum_probs=13.7
Q ss_pred CCCccccccccEEEEeee
Q 034300 39 YSCRAGACSTCAGKLVSG 56 (98)
Q Consensus 39 ~~C~~G~Cg~C~v~v~~G 56 (98)
-.|+.|.|+.|.+...++
T Consensus 4 M~CG~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 4 MACGVGACGGCVVPVKDG 21 (40)
T ss_dssp -SSSSSSS-TTEEECSST
T ss_pred ccCCCcEeCCcEeeeecC
Confidence 469999999999998653
No 84
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=87.93 E-value=0.29 Score=34.79 Aligned_cols=32 Identities=16% Similarity=0.441 Sum_probs=24.2
Q ss_pred hHHHHHHHcCCC---------ccCCCccccccccEEEEeee
Q 034300 25 YILDAAEEAGVD---------LPYSCRAGACSTCAGKLVSG 56 (98)
Q Consensus 25 tlL~a~~~~gi~---------i~~~C~~G~Cg~C~v~v~~G 56 (98)
.+.+.+.+.|++ -.-.||.|.||.|+|....|
T Consensus 226 ~v~~~L~~~Gv~~~~i~~~l~~~m~cg~g~c~~c~~~~~~~ 266 (289)
T PRK08345 226 FVFKELINRGYRPERIYVTLERRMRCGIGKCGHCIVGTSTS 266 (289)
T ss_pred HHHHHHHHcCCCHHHEEEEehhcccccCcccCCCccCCCCc
Confidence 466677778875 24569999999999996443
No 85
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=86.80 E-value=1.7 Score=24.68 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=23.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCc
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i 37 (98)
++|.+ ||+ +++++++.|+.+.+.+.|++.
T Consensus 3 m~i~~---ng~--~~e~~~~~tv~dLL~~l~~~~ 31 (68)
T COG2104 3 MTIQL---NGK--EVEIAEGTTVADLLAQLGLNP 31 (68)
T ss_pred EEEEE---CCE--EEEcCCCCcHHHHHHHhCCCC
Confidence 35555 675 788999999999999999886
No 86
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=86.56 E-value=1.3 Score=24.25 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=21.9
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
+|++ ||+ .++++++.||.+++...++.
T Consensus 2 ~i~v---Ng~--~~~~~~~~tl~~ll~~l~~~ 28 (65)
T PRK06944 2 DIQL---NQQ--TLSLPDGATVADALAAYGAR 28 (65)
T ss_pred EEEE---CCE--EEECCCCCcHHHHHHhhCCC
Confidence 4555 786 78889999999999988875
No 87
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=85.99 E-value=0.54 Score=33.32 Aligned_cols=28 Identities=14% Similarity=0.381 Sum_probs=21.5
Q ss_pred HHHHHHHcCCCc------cCCCccccccccEEEE
Q 034300 26 ILDAAEEAGVDL------PYSCRAGACSTCAGKL 53 (98)
Q Consensus 26 lL~a~~~~gi~i------~~~C~~G~Cg~C~v~v 53 (98)
+.+.+.+.|+++ .-.||.|.|+.|.+..
T Consensus 196 v~~~l~~~gv~~~~sle~~M~CG~G~C~~C~v~~ 229 (281)
T PRK06222 196 VAELTKPYGIKTIVSLNPIMVDGTGMCGACRVTV 229 (281)
T ss_pred HHHHHHhcCCCEEEECcccccCcccccceeEEEE
Confidence 456666778763 4569999999999975
No 88
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=85.58 E-value=2.1 Score=21.85 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=22.6
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHcCCCcc
Q 034300 6 IKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLP 38 (98)
Q Consensus 6 v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~ 38 (98)
|+| ..+|+.+.+. ....|+-++|.++||.+.
T Consensus 2 Vtv-~~dG~~~~v~-T~a~tV~~~L~~~gI~l~ 32 (43)
T PF03990_consen 2 VTV-TVDGKEKTVY-TTASTVGDALKELGITLG 32 (43)
T ss_pred EEE-EECCEEEEEE-eCCCCHHHHHHhCCCCCC
Confidence 455 4489866665 445699999999999863
No 89
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=85.50 E-value=2.1 Score=23.77 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=22.1
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCc
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i 37 (98)
+|++ ||+ .++++++.||.+.+...++..
T Consensus 2 ~i~v---Ng~--~~~~~~~~tl~~ll~~l~~~~ 29 (66)
T PRK08053 2 QILF---NDQ--PMQCAAGQTVHELLEQLNQLQ 29 (66)
T ss_pred EEEE---CCe--EEEcCCCCCHHHHHHHcCCCC
Confidence 4555 886 678899999999998877764
No 90
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=85.49 E-value=1.6 Score=25.98 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=23.3
Q ss_pred EEEEEEcCCCC-EEEEEeCCCchHHHHHHHcCCC
Q 034300 4 YKIKLIGPNGE-EHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 4 ~~v~i~~~~g~-~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
+.|..-.|+.+ ..++++++|.|+.+|+++.|+.
T Consensus 3 VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~ 36 (84)
T PF03658_consen 3 VEVAYALPERQVILTLEVPEGTTVAQAIEASGIL 36 (84)
T ss_dssp EEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHH
T ss_pred EEEEEECCCeEEEEEEECCCcCcHHHHHHHcCch
Confidence 44544445543 2468999999999999999886
No 91
>PRK05802 hypothetical protein; Provisional
Probab=84.33 E-value=0.87 Score=33.10 Aligned_cols=28 Identities=21% Similarity=0.668 Sum_probs=20.8
Q ss_pred HHHHHHH--cCCCc------cCCCccccccccEEEE
Q 034300 26 ILDAAEE--AGVDL------PYSCRAGACSTCAGKL 53 (98)
Q Consensus 26 lL~a~~~--~gi~i------~~~C~~G~Cg~C~v~v 53 (98)
+.+.+.+ .+|+. .-.||.|.||.|.+..
T Consensus 269 v~~~l~~~~~~i~~~~Sle~~M~CG~G~Cg~C~v~~ 304 (320)
T PRK05802 269 IIEYLDKLNEKIKLSCSNNAKMCCGEGICGACTVRY 304 (320)
T ss_pred HHHHHhhhcCCceEEEeCCCeeeCcCccCCeeEEEE
Confidence 4444555 57765 5679999999999996
No 92
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=83.03 E-value=3.8 Score=23.36 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
++|+|....|+...+++++..|+.+.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~L 27 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDL 27 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHH
Confidence 45677666788888899999998874
No 93
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=80.74 E-value=1.5 Score=35.26 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=22.4
Q ss_pred HHHHHHHcCCCc------cCCCccccccccEEEE
Q 034300 26 ILDAAEEAGVDL------PYSCRAGACSTCAGKL 53 (98)
Q Consensus 26 lL~a~~~~gi~i------~~~C~~G~Cg~C~v~v 53 (98)
+.+.+.+.|++. .-.||.|.||.|.+..
T Consensus 196 v~~~l~~~gv~~~~Sle~~M~CG~G~C~~C~v~~ 229 (752)
T PRK12778 196 VCLLTKKYGIPTIVSLNTIMVDGTGMCGACRVTV 229 (752)
T ss_pred HHHHHHHcCCCEEEeCcccccCcccccCcceeEe
Confidence 456666788886 6779999999999964
No 94
>PRK06437 hypothetical protein; Provisional
Probab=80.72 E-value=4.9 Score=22.47 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.4
Q ss_pred CCEEEEEeCCCchHHHHHHHcCCC
Q 034300 13 GEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 13 g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
++.++++++++.|+.+.+.+.|++
T Consensus 10 ~~~~~~~i~~~~tv~dLL~~Lgi~ 33 (67)
T PRK06437 10 HINKTIEIDHELTVNDIIKDLGLD 33 (67)
T ss_pred CcceEEEcCCCCcHHHHHHHcCCC
Confidence 344688999999999999999886
No 95
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=80.55 E-value=2.6 Score=23.70 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=15.7
Q ss_pred cCCCCEEEEEeCCCchHHHHHHHc
Q 034300 10 GPNGEEHEFEAQEDQYILDAAEEA 33 (98)
Q Consensus 10 ~~~g~~~~i~~~~g~tlL~a~~~~ 33 (98)
.++++...|.+.|+.+|.+.+.++
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~ea 26 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEA 26 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHH
T ss_pred ccCCcEEEEEECCCCCHHHHHHHH
Confidence 678888899999999988887663
No 96
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=79.45 E-value=0.74 Score=32.26 Aligned_cols=27 Identities=19% Similarity=0.577 Sum_probs=19.9
Q ss_pred HHHHHHHcCCC---c------cCCCccccccccEEE
Q 034300 26 ILDAAEEAGVD---L------PYSCRAGACSTCAGK 52 (98)
Q Consensus 26 lL~a~~~~gi~---i------~~~C~~G~Cg~C~v~ 52 (98)
+.+.+.+.|++ | .-.|+.|.||.|+|.
T Consensus 205 ~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 205 TVQELLKKGIKEENIWVSYERKMCCGVGKCGHCKID 240 (261)
T ss_pred HHHHHHHcCCCHHHEEEEeccceeccCcCCCCcccC
Confidence 45556677875 1 245999999999887
No 97
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=79.18 E-value=2 Score=27.44 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=15.7
Q ss_pred Cc-eEEEEEEcCCCCEEEEEeCC
Q 034300 1 MA-VYKIKLIGPNGEEHEFEAQE 22 (98)
Q Consensus 1 M~-~~~v~i~~~~g~~~~i~~~~ 22 (98)
|| +|+||+ ||+.|.+++++
T Consensus 1 mmk~~~itv---ng~~y~V~vee 20 (130)
T PRK06549 1 MLRKFKITI---DGKEYLVEMEE 20 (130)
T ss_pred CCceEEEEE---CCEEEEEEEEE
Confidence 55 688888 89989888887
No 98
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=76.40 E-value=6 Score=22.07 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=21.2
Q ss_pred EEEEEcCCCCEEEEEeCCC-chHHHHHHHcCCCc
Q 034300 5 KIKLIGPNGEEHEFEAQED-QYILDAAEEAGVDL 37 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g-~tlL~a~~~~gi~i 37 (98)
+|++ ||+ .++++++ .||.+.+...|++.
T Consensus 2 ~I~v---NG~--~~~~~~~~~tv~~lL~~l~~~~ 30 (67)
T PRK07696 2 NLKI---NGN--QIEVPESVKTVAELLTHLELDN 30 (67)
T ss_pred EEEE---CCE--EEEcCCCcccHHHHHHHcCCCC
Confidence 4555 886 6677887 68999999888763
No 99
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=75.83 E-value=4.6 Score=22.13 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=19.9
Q ss_pred CCCEEEEEeCCCchHHHHHHHcCCC
Q 034300 12 NGEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 12 ~g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
||+ .++++++.||.+.+...+++
T Consensus 4 Ng~--~~~~~~~~tv~~ll~~l~~~ 26 (64)
T TIGR01683 4 NGE--PVEVEDGLTLAALLESLGLD 26 (64)
T ss_pred CCe--EEEcCCCCcHHHHHHHcCCC
Confidence 786 78889999999999998876
No 100
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=75.63 E-value=6.4 Score=21.20 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=18.5
Q ss_pred EEEEeCCCchHHHHHHHcCCCccC
Q 034300 16 HEFEAQEDQYILDAAEEAGVDLPY 39 (98)
Q Consensus 16 ~~i~~~~g~tlL~a~~~~gi~i~~ 39 (98)
-.++++.|.||+|++..+|=..+.
T Consensus 12 G~~~~~~g~tl~~~i~~AGG~~~~ 35 (59)
T PF10531_consen 12 GTYELPPGTTLSDAIAQAGGLTPR 35 (59)
T ss_dssp EEEEEETT-BHHHHHHCTTSBBTT
T ss_pred EEEEECCCCcHHHHHHHhCCCCCC
Confidence 368889999999999988765544
No 101
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=74.35 E-value=1.2 Score=31.30 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=20.4
Q ss_pred HHHHHHHcCCC---------ccCCCccccccccEEE
Q 034300 26 ILDAAEEAGVD---------LPYSCRAGACSTCAGK 52 (98)
Q Consensus 26 lL~a~~~~gi~---------i~~~C~~G~Cg~C~v~ 52 (98)
+.+.+++.|++ -.-.|+.|.||+|++.
T Consensus 207 ~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 207 TVLEFLKRGIKEENIWVSYERKMCCGVGKCGHCKID 242 (263)
T ss_pred HHHHHHHcCCCHHHEEEEecceeEccCcccCCcccC
Confidence 45566777875 2356999999999976
No 102
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=73.99 E-value=1.7 Score=29.75 Aligned_cols=16 Identities=31% Similarity=0.895 Sum_probs=14.0
Q ss_pred cCCCccccccccEEEE
Q 034300 38 PYSCRAGACSTCAGKL 53 (98)
Q Consensus 38 ~~~C~~G~Cg~C~v~v 53 (98)
.-.|+.|.||.|.+..
T Consensus 213 ~m~Cg~G~C~~C~~~~ 228 (243)
T cd06192 213 PMCCGIGICGACTIET 228 (243)
T ss_pred cccCccccccceEEEe
Confidence 4669999999999985
No 103
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=73.95 E-value=8.9 Score=21.87 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
++|+|...+|+...+++++..|+-+.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~l 28 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSEL 28 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHH
Confidence 46777777898888889999998764
No 104
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=73.85 E-value=4.3 Score=34.06 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=20.5
Q ss_pred HHHHHHHcCCC------ccCCCccccccccEEEE
Q 034300 26 ILDAAEEAGVD------LPYSCRAGACSTCAGKL 53 (98)
Q Consensus 26 lL~a~~~~gi~------i~~~C~~G~Cg~C~v~v 53 (98)
+.+.++..|++ -...|+.|.||.|++.+
T Consensus 196 v~~~~~~~gi~~~vSle~~M~cG~G~Cg~C~v~~ 229 (1006)
T PRK12775 196 CVETTRPFGVKTMVSLNAIMVDGTGMCGSCRVTV 229 (1006)
T ss_pred HHHHHHHCCCcEEECChhheeCccceeCCCEeee
Confidence 33445567874 24679999999999986
No 105
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=73.82 E-value=7.1 Score=21.40 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=19.6
Q ss_pred CCCEEEEEeCCCchHHHHHHHcCCC
Q 034300 12 NGEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 12 ~g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
||+ .++++++.|+.+.+...+++
T Consensus 5 Ng~--~~~~~~~~tv~~ll~~l~~~ 27 (65)
T cd00565 5 NGE--PREVEEGATLAELLEELGLD 27 (65)
T ss_pred CCe--EEEcCCCCCHHHHHHHcCCC
Confidence 775 78889999999999998865
No 106
>PRK10972 Z-ring-associated protein; Provisional
Probab=73.48 E-value=3 Score=25.94 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=22.0
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCc--hHHHHHHH
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQ--YILDAAEE 32 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~--tlL~a~~~ 32 (98)
|+...|.| ..-|+.+.|.+|+|+ .|++|+..
T Consensus 1 MS~~~v~v-~ILgr~y~v~Cp~~e~~~L~~AA~~ 33 (109)
T PRK10972 1 MSAQPVDI-QIFGRSLRVNCPPEQRDALNQAAED 33 (109)
T ss_pred CCCCceEE-EECCceeEecCChhHHHHHHHHHHH
Confidence 66444554 447888999999984 68888754
No 107
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=73.42 E-value=11 Score=22.04 Aligned_cols=28 Identities=7% Similarity=0.028 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCEEEEEe--CCCchHHHHHH
Q 034300 4 YKIKLIGPNGEEHEFEA--QEDQYILDAAE 31 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~--~~g~tlL~a~~ 31 (98)
++++|..++++...|++ ++..|+.+.=.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~ 31 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKT 31 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHH
Confidence 57888888998755555 89999988543
No 108
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=71.39 E-value=10 Score=21.16 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.5
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
+|+|...+|+...+++++..|+.+.
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~l 26 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAEL 26 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 3555557888889999999998775
No 109
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=71.05 E-value=10 Score=20.62 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+|.|..++|+...+++++..|+.+.-
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK 27 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDLK 27 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 45555678888899999999987753
No 110
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=70.51 E-value=6.2 Score=20.67 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=20.4
Q ss_pred EcCCCCEEEEEeCCCchHHHHHHHcCCCc
Q 034300 9 IGPNGEEHEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 9 ~~~~g~~~~i~~~~g~tlL~a~~~~gi~i 37 (98)
+.++|+ .++++.|.|+.+.+...+..+
T Consensus 4 ~~~~g~--~~~~~~~~t~~~~~~~~~~~~ 30 (60)
T cd01668 4 FTPKGE--IIELPAGATVLDFAYAIHTEI 30 (60)
T ss_pred ECCCCC--EEEcCCCCCHHHHHHHHChHh
Confidence 367886 678899999999887655443
No 111
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=69.97 E-value=11 Score=20.71 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=20.4
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+|+|...+|+...+++++..|+.+.-
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK 27 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVK 27 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHH
Confidence 35666678988889999999987754
No 112
>PTZ00044 ubiquitin; Provisional
Probab=69.41 E-value=12 Score=20.86 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+|.|...+|+...+.+.+..|+.+.-
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK 27 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVK 27 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 35555678988899999999987743
No 113
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=69.09 E-value=14 Score=20.64 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=18.7
Q ss_pred EEEcCCCCEEEEEeCCCchHHHH
Q 034300 7 KLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 7 ~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
.|..++|+...+++.+..|+.+.
T Consensus 2 ~vk~~~g~~~~l~v~~~~tV~~l 24 (74)
T cd01810 2 LVRNDKGRSSIYEVQLTQTVATL 24 (74)
T ss_pred EEECCCCCEEEEEECCcChHHHH
Confidence 45567888888999999999883
No 114
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=69.05 E-value=12 Score=20.88 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=20.0
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+|+|...+|+...+++.+.+|+-+.=
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK 27 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLK 27 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 35555568988889999999988743
No 115
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=68.86 E-value=7.3 Score=29.77 Aligned_cols=26 Identities=31% Similarity=0.357 Sum_probs=23.0
Q ss_pred CCCEEEEEeCCCchHHHHHHHcCCCccC
Q 034300 12 NGEEHEFEAQEDQYILDAAEEAGVDLPY 39 (98)
Q Consensus 12 ~g~~~~i~~~~g~tlL~a~~~~gi~i~~ 39 (98)
||+ +++++.|.||-||+...|.+.+-
T Consensus 7 nGe--ev~lp~gsTlrdalea~ga~y~e 32 (512)
T COG4070 7 NGE--EVTLPAGSTLRDALEASGASYIE 32 (512)
T ss_pred CCe--EecCCCcchHHHHHHhcCCcccC
Confidence 886 89999999999999999987654
No 116
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=67.48 E-value=5.2 Score=33.40 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=21.8
Q ss_pred HHHHHHHcCCCc------cCCCccccccccEEEE
Q 034300 26 ILDAAEEAGVDL------PYSCRAGACSTCAGKL 53 (98)
Q Consensus 26 lL~a~~~~gi~i------~~~C~~G~Cg~C~v~v 53 (98)
+.+.+++.|++. ...|+-|.||.|.+.+
T Consensus 862 v~~~l~~~Gv~~~vSlE~~M~CG~G~C~~C~v~~ 895 (944)
T PRK12779 862 VSDLTKPYGVKTVASLNSIMVDATGMCGACMVPV 895 (944)
T ss_pred HHHHHHHcCCCeEEeecccccCCCeeeCeeeeee
Confidence 455566778764 5679999999999985
No 117
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=67.32 E-value=14 Score=20.33 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=20.0
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+|+|...+|+...+++++..|+-+.-
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK 27 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIK 27 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHH
Confidence 45565678988889999999987744
No 118
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=66.78 E-value=17 Score=20.62 Aligned_cols=25 Identities=8% Similarity=0.279 Sum_probs=19.8
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
+|+|....|+...+++++..|+-+.
T Consensus 3 ~I~Vk~~~G~~~~l~v~~~~TV~~L 27 (78)
T cd01804 3 NLNIHSTTGTRFDLSVPPDETVEGL 27 (78)
T ss_pred EEEEEECCCCEEEEEECCcCHHHHH
Confidence 5666666788888999999998764
No 119
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=65.39 E-value=3.5 Score=34.76 Aligned_cols=19 Identities=32% Similarity=0.861 Sum_probs=15.9
Q ss_pred cCCCc-cccccccEEEEeeee
Q 034300 38 PYSCR-AGACSTCAGKLVSGS 57 (98)
Q Consensus 38 ~~~C~-~G~Cg~C~v~v~~G~ 57 (98)
|-.|. .|.||.|++++ .|+
T Consensus 971 ~M~c~m~giC~qC~~~~-~G~ 990 (1028)
T PRK06567 971 SMQCMMKGICGQCIQKV-KGE 990 (1028)
T ss_pred HHHHHhhhhhhhheEEe-cCe
Confidence 56699 99999999998 444
No 120
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=64.44 E-value=23 Score=21.09 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEE 32 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~ 32 (98)
.-|+|+..||..+++.+.+.+|..+++..
T Consensus 3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~ 31 (85)
T cd01787 3 QVVKVYSEDGASKSLEVDERMTARDVCQL 31 (85)
T ss_pred eEEEEEecCCCeeEEEEcCCCcHHHHHHH
Confidence 34667778999999999999999988764
No 121
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=63.71 E-value=16 Score=22.90 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=21.1
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
|+.+-++| .|++..++++|-+|++..
T Consensus 1 ~~~~~~~~---~GKT~~le~EpS~ti~~v 26 (128)
T KOG0003|consen 1 MQIFVKTL---TGKTITLEVEPSDTIDNV 26 (128)
T ss_pred CcEEEEEe---eCceEEEEecccchHHHH
Confidence 56667777 688888999999999874
No 122
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=63.71 E-value=12 Score=21.23 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=18.0
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
+|++ .-+|+.+.++++++.|+.+.
T Consensus 2 ~i~v-k~~g~~~~v~v~~~~Tv~~l 25 (74)
T cd01813 2 PVIV-KWGGQEYSVTTLSEDTVLDL 25 (74)
T ss_pred EEEE-EECCEEEEEEECCCCCHHHH
Confidence 3444 33788889999999999764
No 123
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=63.46 E-value=8.3 Score=18.98 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=13.3
Q ss_pred EeCCCchHHHHHHHcCCCcc
Q 034300 19 EAQEDQYILDAAEEAGVDLP 38 (98)
Q Consensus 19 ~~~~g~tlL~a~~~~gi~i~ 38 (98)
.+.+|+|+-..+.+.|+.+.
T Consensus 2 ~V~~gDtl~~IA~~~~~~~~ 21 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRYGISVD 21 (44)
T ss_dssp EE-TT--HHHHHHHTTS-HH
T ss_pred EECcCCcHHHHHhhhhhhHh
Confidence 57899999999999987753
No 124
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=62.94 E-value=31 Score=20.91 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
++|+|...+|+...+++++..|+-+.
T Consensus 28 M~I~Vk~l~G~~~~leV~~~~TV~~l 53 (103)
T cd01802 28 MELFIETLTGTCFELRVSPFETVISV 53 (103)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHH
Confidence 46777777898889999999998874
No 125
>PRK00969 hypothetical protein; Provisional
Probab=62.85 E-value=13 Score=29.01 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=27.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR 42 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~ 42 (98)
++|.+ ||+ .++++.|.||-|++..+|.+.+-++-
T Consensus 2 m~V~v---ng~--~~~v~~g~Tl~Dal~~s~~~y~~g~~ 35 (508)
T PRK00969 2 MSVKV---NGE--EVTVPEGSTLKDALKASGAPYIEGTN 35 (508)
T ss_pred eEEEE---CCE--EeecCCCCcHHHHHhhcCCCcCCCCE
Confidence 34666 786 78899999999999999988766553
No 126
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=62.06 E-value=8.9 Score=22.53 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=13.5
Q ss_pred EEEEeCCCchHHHHHHHcCCCc
Q 034300 16 HEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 16 ~~i~~~~g~tlL~a~~~~gi~i 37 (98)
.++.|++|+||-....+.|++.
T Consensus 3 ~~~~V~~GDtLs~iF~~~gls~ 24 (85)
T PF04225_consen 3 QEYTVKSGDTLSTIFRRAGLSA 24 (85)
T ss_dssp -EEE--TT--HHHHHHHTT--H
T ss_pred cEEEECCCCcHHHHHHHcCCCH
Confidence 3688999999999999999884
No 127
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=61.68 E-value=25 Score=20.52 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHcCCCccC
Q 034300 15 EHEFEAQEDQYILDAAEEAGVDLPY 39 (98)
Q Consensus 15 ~~~i~~~~g~tlL~a~~~~gi~i~~ 39 (98)
...+.+.++.||-+..++.|++.+-
T Consensus 24 ~~~~~~~~~~tvkd~IEsLGVP~tE 48 (81)
T PF14451_consen 24 PFTHPFDGGATVKDVIESLGVPHTE 48 (81)
T ss_pred ceEEecCCCCcHHHHHHHcCCChHH
Confidence 4567889999999999999999653
No 128
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=60.64 E-value=26 Score=19.57 Aligned_cols=20 Identities=5% Similarity=0.116 Sum_probs=16.9
Q ss_pred cCCCCEEEEEeCCCchHHHH
Q 034300 10 GPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 10 ~~~g~~~~i~~~~g~tlL~a 29 (98)
..+|+...+++++..|+.+.
T Consensus 5 ~~~G~~~~l~v~~~~TV~~l 24 (70)
T cd01794 5 LSTGKDVKLSVSSKDTVGQL 24 (70)
T ss_pred cCCCCEEEEEECCcChHHHH
Confidence 35788889999999999883
No 129
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]
Probab=59.90 E-value=11 Score=26.54 Aligned_cols=26 Identities=4% Similarity=0.221 Sum_probs=22.6
Q ss_pred CCEEEEEeCCCchHHHHHHHcCCCcc
Q 034300 13 GEEHEFEAQEDQYILDAAEEAGVDLP 38 (98)
Q Consensus 13 g~~~~i~~~~g~tlL~a~~~~gi~i~ 38 (98)
|.-+++.++.|.||.+..+.+++++.
T Consensus 157 g~wqsy~V~~G~TLaQlFRdn~Lpit 182 (242)
T COG3061 157 GNWQSYTVPQGKTLAQLFRDNNLPIT 182 (242)
T ss_pred ccceeEEecCCccHHHHHhccCCChH
Confidence 44568999999999999999999864
No 130
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=59.40 E-value=19 Score=20.43 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=21.2
Q ss_pred CceEEEEEEc----CCC-CEEEEEeCCCchHHHHHHHc
Q 034300 1 MAVYKIKLIG----PNG-EEHEFEAQEDQYILDAAEEA 33 (98)
Q Consensus 1 M~~~~v~i~~----~~g-~~~~i~~~~g~tlL~a~~~~ 33 (98)
||+++|.++. .-| ...+++++++.|+-+.+..-
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l 38 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAEL 38 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHH
Confidence 6777887743 223 23578888898876665544
No 131
>COG3027 zapA Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.38 E-value=20 Score=22.07 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=21.0
Q ss_pred CceEEEEEEcCCCCEEEEEeCCC--chHHHHHHHc
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQED--QYILDAAEEA 33 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g--~tlL~a~~~~ 33 (98)
|..++|+| +|+.+.+.+++| +.|.+++..-
T Consensus 1 ~~~VtI~I---~Gk~y~v~c~~~qee~L~~~A~~l 32 (105)
T COG3027 1 MAQVTITI---LGKSYRVNCPEEQEEHLRQAARLL 32 (105)
T ss_pred CCceEEEE---cCeeeEecCCCCcHHHHHHHHHHH
Confidence 44555555 899888888776 4688877653
No 132
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=56.95 E-value=37 Score=19.67 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=26.4
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i 37 (98)
.++|.+...+|+...|.+.+.++|..... +.|++.
T Consensus 11 ~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~ 49 (87)
T cd01763 11 HINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSM 49 (87)
T ss_pred eEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCc
Confidence 35677777889988999999999877654 356653
No 133
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=56.67 E-value=8.8 Score=24.74 Aligned_cols=29 Identities=31% Similarity=0.628 Sum_probs=21.4
Q ss_pred CchHHHHHHHcCCC--ccCCCcc---ccccccEE
Q 034300 23 DQYILDAAEEAGVD--LPYSCRA---GACSTCAG 51 (98)
Q Consensus 23 g~tlL~a~~~~gi~--i~~~C~~---G~Cg~C~v 51 (98)
-.-|++.+.+.|++ ..++|.. ..||+|.-
T Consensus 126 K~ei~~~~~~~g~~~~~s~sC~~~~~~~CG~C~~ 159 (169)
T cd01995 126 KAEIVRLGGELGVPLELTWSCYNGGEKHCGECDS 159 (169)
T ss_pred HHHHHHHHhHcCCChhheeeccCCCCCCCCCCHH
Confidence 34577888888987 6789983 37888853
No 134
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=55.95 E-value=24 Score=20.41 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=19.5
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEE 32 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~ 32 (98)
.+-|+|.-++|. ..|++++..|+-+....
T Consensus 4 ~milRvrS~dG~-~Rie~~~~~t~~~L~~k 32 (80)
T PF11543_consen 4 SMILRVRSKDGM-KRIEVSPSSTLSDLKEK 32 (80)
T ss_dssp --EEEEE-SSEE-EEEEE-TTSBHHHHHHH
T ss_pred cEEEEEECCCCC-EEEEcCCcccHHHHHHH
Confidence 456788778885 68999999998776543
No 135
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=54.91 E-value=14 Score=17.08 Aligned_cols=21 Identities=10% Similarity=0.343 Sum_probs=16.8
Q ss_pred EEEeCCCchHHHHHHHcCCCc
Q 034300 17 EFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 17 ~i~~~~g~tlL~a~~~~gi~i 37 (98)
.+.+.+|+|+-..+.+.|+..
T Consensus 2 ~~~v~~gdt~~~ia~~~~~~~ 22 (46)
T cd00118 2 TYTVKKGDTLSSIAQRYGISV 22 (46)
T ss_pred EEEECCCCCHHHHHHHHCcCH
Confidence 466789999999988887764
No 136
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=53.99 E-value=22 Score=21.03 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=23.7
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
|.+++|++....| +-=|.|+++..|+.+.|..
T Consensus 1 ~~~v~V~V~lK~~----VlDPqG~ti~~aL~~lg~~ 32 (83)
T COG1828 1 MYKVRVYVTLKPG----VLDPEGETIEKALHRLGYN 32 (83)
T ss_pred CeEEEEEEEeCCc----ccCchhHHHHHHHHHcCCc
Confidence 5666777644343 5458899999999999876
No 137
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=53.99 E-value=22 Score=19.28 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=18.8
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAE 31 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~ 31 (98)
+|++.. +|+..++++++..|+-+.-.
T Consensus 2 ~i~vk~-~g~~~~i~v~~~~tv~~lK~ 27 (71)
T cd01812 2 RVRVKH-GGESHDLSISSQATFGDLKK 27 (71)
T ss_pred EEEEEE-CCEEEEEEECCCCcHHHHHH
Confidence 466643 47778899999999877543
No 138
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=53.31 E-value=9.1 Score=18.43 Aligned_cols=19 Identities=26% Similarity=0.414 Sum_probs=14.7
Q ss_pred eCCCchHHHHHHHcCCCcc
Q 034300 20 AQEDQYILDAAEEAGVDLP 38 (98)
Q Consensus 20 ~~~g~tlL~a~~~~gi~i~ 38 (98)
+.+|+||.+.+.+.|+.+.
T Consensus 1 v~~gdtl~~IA~~~~~~~~ 19 (44)
T TIGR02899 1 VQKGDTLWKIAKKYGVDFD 19 (44)
T ss_pred CCCCCCHHHHHHHHCcCHH
Confidence 3678899999988877643
No 139
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=52.53 E-value=19 Score=29.33 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=30.4
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR 42 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~ 42 (98)
.|.++.|.|. .++.|.|.|.||.|-+-.-.+-+.|.
T Consensus 387 ~v~VfTP~G~--v~~LP~GaT~lDFAY~iHt~iG~~c~ 422 (702)
T PRK11092 387 EIYVFTPEGR--IVELPAGATPVDFAYAVHTDIGHACV 422 (702)
T ss_pred eEEEECCCCC--EEeCCCCCchhhhhHhhCchhhceeE
Confidence 4677799997 78999999999999988777877665
No 140
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=52.28 E-value=31 Score=18.83 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=23.8
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCcc
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDLP 38 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i~ 38 (98)
+|++...+|+...+.+.+.+++-.... +.|++.+
T Consensus 2 ~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~ 39 (72)
T PF11976_consen 2 TIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPE 39 (72)
T ss_dssp EEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCcc
Confidence 566666788888899999987665553 3566654
No 141
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=50.74 E-value=31 Score=18.70 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=18.3
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCc
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i 37 (98)
+|++ ||+ .+++ +..||.+.+...+++.
T Consensus 2 ~i~~---Ng~--~~~~-~~~tl~~Ll~~l~~~~ 28 (65)
T PRK06488 2 KLFV---NGE--TLQT-EATTLALLLAELDYEG 28 (65)
T ss_pred EEEE---CCe--EEEc-CcCcHHHHHHHcCCCC
Confidence 4555 886 4555 4569998888877653
No 142
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=50.65 E-value=44 Score=18.71 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
.+|.|..|||+..+.....++||-+.
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l 28 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDV 28 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHH
Confidence 45677779998777888888886554
No 143
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=50.25 E-value=33 Score=18.77 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=17.6
Q ss_pred EEcCCCCEEEEEeCCCchHHHH
Q 034300 8 LIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 8 i~~~~g~~~~i~~~~g~tlL~a 29 (98)
|...+|+...+++++..|+-+.
T Consensus 3 vk~~~g~~~~~~v~~~~tV~~l 24 (70)
T cd01798 3 VRTNTGHTFPVEVDPDTDIKQL 24 (70)
T ss_pred EEcCCCCEEEEEECCCChHHHH
Confidence 4456888888999999998873
No 144
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=49.95 E-value=30 Score=19.19 Aligned_cols=23 Identities=4% Similarity=0.088 Sum_probs=17.6
Q ss_pred EEEcC-CCCEEEEEeCCCchHHHH
Q 034300 7 KLIGP-NGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 7 ~i~~~-~g~~~~i~~~~g~tlL~a 29 (98)
+|..+ +|+...+++++..|+-+.
T Consensus 2 ~v~~~~~g~~~~l~v~~~~TV~~l 25 (71)
T cd01796 2 TVYTARSETTFSLDVDPDLELENF 25 (71)
T ss_pred EEEECCCCCEEEEEECCcCCHHHH
Confidence 34445 787789999999998874
No 145
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=49.80 E-value=15 Score=30.09 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=29.7
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR 42 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~ 42 (98)
.|.++.|+|+ .+.++.|.|.||.|-+-.-++-+.|.
T Consensus 405 ~V~VfTPkG~--~~~Lp~gaT~lDfAy~iHt~iG~~~~ 440 (743)
T PRK10872 405 RVYVFTPKGD--VVDLPAGSTPLDFAYHIHSDVGHRCI 440 (743)
T ss_pred eEEEECCCCC--eEEcCCCCcHHHHHHHHhHHHHhhce
Confidence 4677799997 79999999999999876666777775
No 146
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=49.52 E-value=28 Score=25.74 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=22.7
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCc
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i 37 (98)
+|++ ||+ .++++++.||.+.+...+++.
T Consensus 2 ~I~V---NGk--~~el~e~~TL~dLL~~L~i~~ 29 (326)
T PRK11840 2 RIRL---NGE--PRQVPAGLTIAALLAELGLAP 29 (326)
T ss_pred EEEE---CCE--EEecCCCCcHHHHHHHcCCCC
Confidence 4555 786 688899999999999988864
No 147
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=48.20 E-value=17 Score=29.34 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=29.3
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR 42 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~ 42 (98)
.|.++.|.|. .+.++.|.|.||.|-+-.-++-+.|-
T Consensus 361 ~i~vfTPkG~--~~~lp~gst~~DfAy~ih~~~g~~~~ 396 (683)
T TIGR00691 361 EIYVFTPKGD--VVELPSGSTPVDFAYAVHTDVGNKCT 396 (683)
T ss_pred ceEEECCCCe--EEEcCCCCCHHHHHHHHhHHhHhcee
Confidence 4666689996 78999999999999877666777774
No 148
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=47.63 E-value=20 Score=23.46 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=13.8
Q ss_pred CceEEEEEEcCCCCEEEEEeCC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQE 22 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~ 22 (98)
|..|+|+| ||+.|.+++++
T Consensus 22 ~~~~~itv---nG~~y~V~vee 40 (153)
T PRK05641 22 PGKFRVSF---EGKTYEVEAKG 40 (153)
T ss_pred CccEEEEE---CCEEEEEEEEE
Confidence 33577777 89888888866
No 149
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=47.41 E-value=1.5 Score=27.08 Aligned_cols=26 Identities=23% Similarity=0.449 Sum_probs=20.9
Q ss_pred cCCCCEEEEEeCCCchHHHHHHHcCC
Q 034300 10 GPNGEEHEFEAQEDQYILDAAEEAGV 35 (98)
Q Consensus 10 ~~~g~~~~i~~~~g~tlL~a~~~~gi 35 (98)
..+|..+++..|.|.+++++..+..|
T Consensus 87 L~~GAdrt~~~PdG~~~~eate~edI 112 (117)
T KOG4214|consen 87 LQNGADRTIHAPDGTALIEATEEEDI 112 (117)
T ss_pred HHcCcccceeCCCchhHHhhccHHHH
Confidence 35677778999999999999877654
No 150
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=46.19 E-value=16 Score=25.43 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=19.4
Q ss_pred hHHHHHHHcC-CC----ccCCCccc----cccccEEEE
Q 034300 25 YILDAAEEAG-VD----LPYSCRAG----ACSTCAGKL 53 (98)
Q Consensus 25 tlL~a~~~~g-i~----i~~~C~~G----~Cg~C~v~v 53 (98)
-|.+.+.+.| ++ .-++|..| .||+|...+
T Consensus 167 eI~~l~~~lg~v~~~~~~T~SCy~g~~g~~CG~C~sC~ 204 (231)
T PRK11106 167 ETWALADYYGQLDLVRHETLTCYNGIKGDGCGHCAACH 204 (231)
T ss_pred HHHHHHHHcCCcccccCceeeccCcCCCCCCCCCHHHH
Confidence 3666677788 54 57899963 677775543
No 151
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=45.54 E-value=56 Score=18.45 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
.+|.|..|||+.......+.+||-+.-
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~ 31 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVY 31 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHH
Confidence 356676799998888889999876644
No 152
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.14 E-value=37 Score=25.56 Aligned_cols=26 Identities=4% Similarity=0.181 Sum_probs=20.9
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+|+|...+|+.+.|++.+..|+.+.=
T Consensus 2 kItVKtl~g~~~~IeV~~~~TV~dLK 27 (378)
T TIGR00601 2 TLTFKTLQQQKFKIDMEPDETVKELK 27 (378)
T ss_pred EEEEEeCCCCEEEEEeCCcChHHHHH
Confidence 46666678988899999999998854
No 153
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=44.79 E-value=46 Score=17.22 Aligned_cols=24 Identities=4% Similarity=0.115 Sum_probs=16.6
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
+|+|..++ +...++++++.|+.+.
T Consensus 2 ~i~vk~~~-~~~~~~v~~~~tv~~l 25 (64)
T smart00213 2 ELTVKTLD-GTITLEVKPSDTVSEL 25 (64)
T ss_pred EEEEEECC-ceEEEEECCCCcHHHH
Confidence 34554455 4678999999998664
No 154
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=44.56 E-value=10 Score=25.96 Aligned_cols=25 Identities=40% Similarity=0.856 Sum_probs=15.3
Q ss_pred HHHHHHHcCCC--ccCCCccc-----cccccE
Q 034300 26 ILDAAEEAGVD--LPYSCRAG-----ACSTCA 50 (98)
Q Consensus 26 lL~a~~~~gi~--i~~~C~~G-----~Cg~C~ 50 (98)
++..+.+.|++ .-++|..| .||.|.
T Consensus 166 iv~~~~~lg~~~~~T~SCy~~~~~~~~CG~C~ 197 (209)
T PF06508_consen 166 IVKLGVELGVPLELTWSCYRGGEKGKHCGRCP 197 (209)
T ss_dssp HHHHHHHTTHHHHH-B-STTS--BTTTTSSSH
T ss_pred HHHHHHHcCCCHHHccCCCCCCCCCCCCCCCH
Confidence 44555667755 67899955 678774
No 155
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=44.35 E-value=54 Score=17.94 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=18.6
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
+|+|..++|+ ..+++++..|+.+.
T Consensus 2 ~i~vk~~~g~-~~l~v~~~~TV~~l 25 (71)
T cd01808 2 KVTVKTPKDK-EEIEIAEDASVKDF 25 (71)
T ss_pred EEEEEcCCCC-EEEEECCCChHHHH
Confidence 4666667886 58999999998873
No 156
>smart00257 LysM Lysin motif.
Probab=42.85 E-value=35 Score=15.34 Aligned_cols=20 Identities=10% Similarity=0.340 Sum_probs=15.4
Q ss_pred EEeCCCchHHHHHHHcCCCc
Q 034300 18 FEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 18 i~~~~g~tlL~a~~~~gi~i 37 (98)
+.+.+|+|+-..+.+.++..
T Consensus 2 ~~v~~gdt~~~ia~~~~~~~ 21 (44)
T smart00257 2 YTVKKGDTLSSIARRYGISV 21 (44)
T ss_pred eEeCCCCCHHHHHHHhCCCH
Confidence 45788899998888877653
No 157
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=42.06 E-value=24 Score=23.47 Aligned_cols=26 Identities=42% Similarity=0.839 Sum_probs=19.2
Q ss_pred hHHHHHHHcC---CC--ccCCCcc---ccccccE
Q 034300 25 YILDAAEEAG---VD--LPYSCRA---GACSTCA 50 (98)
Q Consensus 25 tlL~a~~~~g---i~--i~~~C~~---G~Cg~C~ 50 (98)
-+++.+++.| ++ ..++|.. ..||+|.
T Consensus 163 eI~~la~~~g~~~~~~~~t~sC~~~~~~~CG~C~ 196 (201)
T TIGR00364 163 EIVQLADELGVLDLVIKLTYSCYAGGGEGCGKCP 196 (201)
T ss_pred HHHHHHHHcCCccccHhhCCcCCCcCCCCCCCCh
Confidence 4777888889 54 6789983 3688885
No 158
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=41.19 E-value=22 Score=24.40 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.2
Q ss_pred hHHHHHHHcCCCccCCCc
Q 034300 25 YILDAAEEAGVDLPYSCR 42 (98)
Q Consensus 25 tlL~a~~~~gi~i~~~C~ 42 (98)
-++++|+++|+.+|++=.
T Consensus 118 A~akgArd~GL~fPh~~~ 135 (193)
T PRK08569 118 AALKGAIDAGLEIPHGEE 135 (193)
T ss_pred HHHHHHHHcCCcCCCCCC
Confidence 588899999999999733
No 159
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=41.10 E-value=48 Score=16.43 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=17.7
Q ss_pred cCCCCEEEEEeCCCchHHHHHHHcCC
Q 034300 10 GPNGEEHEFEAQEDQYILDAAEEAGV 35 (98)
Q Consensus 10 ~~~g~~~~i~~~~g~tlL~a~~~~gi 35 (98)
.++|. .++++.|.|+.+.+.+...
T Consensus 5 ~~~~~--~~~~~~g~t~~~~~~~~~~ 28 (60)
T cd01616 5 TPDGS--AVELPKGATAMDFALKIHT 28 (60)
T ss_pred CCCCC--EEEcCCCCCHHHHHHHHHH
Confidence 45675 6778899999998876543
No 160
>PRK04290 30S ribosomal protein S6e; Validated
Probab=40.60 E-value=48 Score=20.83 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=31.7
Q ss_pred CceEEEEEEcCC-CCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeee
Q 034300 1 MAVYKIKLIGPN-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVD 59 (98)
Q Consensus 1 M~~~~v~i~~~~-g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~ 59 (98)
|+.+++.|..|. |+++.|+++.....-=.-++-|-.++.+.- |. --...+|..|...
T Consensus 1 m~~~Kl~IsdP~tG~~~~~ei~~~~~~~f~gkriG~evdg~~l-G~-~Gy~l~ItGGsDk 58 (115)
T PRK04290 1 MADFKVVVSDPKTGKAYQIEIDGAEANRLIGKKIGDEIDGSIV-GL-DGYKLKITGGSDK 58 (115)
T ss_pred CCceEEEEEcCCCCeEEEEEeCcHHHhhhhccccccEEcccee-CC-CCeEEEEecccCC
Confidence 777888887765 777788887664332111223333444332 11 3346777666543
No 161
>COG1356 tfx Transcriptional regulator [DNA replication, recombination and repair]
Probab=40.01 E-value=43 Score=21.60 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=19.3
Q ss_pred EEEEEeCCCchHHHHHH-------HcCCCccCC
Q 034300 15 EHEFEAQEDQYILDAAE-------EAGVDLPYS 40 (98)
Q Consensus 15 ~~~i~~~~g~tlL~a~~-------~~gi~i~~~ 40 (98)
...|.+++|+++.+.-. ++||.++|+
T Consensus 67 pv~i~v~aGe~~dei~e~l~k~adeagikV~~~ 99 (143)
T COG1356 67 PVSITVKAGEDIDEIPERLFKEADEAGIKVPYS 99 (143)
T ss_pred CeEEEecCCCcHHHHHHHHHHhccccccccccC
Confidence 45789999998776543 378888874
No 162
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=38.79 E-value=77 Score=18.77 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=23.4
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH----HHHcCCCcc
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDA----AEEAGVDLP 38 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a----~~~~gi~i~ 38 (98)
.++|..|.|+.+.|.+.+..++-+. +.+-|++..
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~ 39 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDF 39 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence 4566789999899999877665543 345566643
No 163
>PRK05783 hypothetical protein; Provisional
Probab=38.65 E-value=48 Score=19.59 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i 37 (98)
..+|.+....| +-=|.|+++..+|.+.|+.-
T Consensus 4 k~~V~V~lK~g----VlDPqG~aI~~aL~~lg~~~ 34 (84)
T PRK05783 4 YVELIIINKDS----VRDPEGETIQRYVIERYTGN 34 (84)
T ss_pred EEEEEEEECCC----CcCchHHHHHHHHHHcCCCC
Confidence 44555533333 44588999999998887653
No 164
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.42 E-value=98 Score=18.91 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=25.3
Q ss_pred CceEEEEEE--cCCCCE-EEEEeCCCchHHHHHHHcCCC
Q 034300 1 MAVYKIKLI--GPNGEE-HEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 1 M~~~~v~i~--~~~g~~-~~i~~~~g~tlL~a~~~~gi~ 36 (98)
|.++.|.+. .|+-+. .+++++.|.|+-+|.+..|+.
T Consensus 1 ~~~I~VevvyAlPerq~l~~v~v~egatV~dAi~~Sgll 39 (99)
T COG2914 1 PEMIAVEVVYALPERQYLCRVQLQEGATVEDAILASGLL 39 (99)
T ss_pred CceeEEEEEEEcCCcceEEEEEeccCcCHHHHHHhcchh
Confidence 445444443 354432 368999999999999999886
No 165
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=36.97 E-value=79 Score=17.69 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
..+|.|..|||+...-...+.+||-+.
T Consensus 6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l 32 (82)
T PF00789_consen 6 VVRIQVRLPDGSRLQRRFPKSDTLQDL 32 (82)
T ss_dssp EEEEEEEETTSTEEEEEEETTSBHHHH
T ss_pred EEEEEEECCCCCEEEEEECCcchHHHH
Confidence 345667779999878888888887554
No 166
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=36.86 E-value=82 Score=17.87 Aligned_cols=28 Identities=7% Similarity=0.027 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAE 31 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~ 31 (98)
.+|.|..|||+...-..+...+|-+...
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~ 32 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRL 32 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHH
Confidence 3566767999877778888888877553
No 167
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=36.69 E-value=19 Score=19.95 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=12.2
Q ss_pred CchHHHHHHHcCCCccCC
Q 034300 23 DQYILDAAEEAGVDLPYS 40 (98)
Q Consensus 23 g~tlL~a~~~~gi~i~~~ 40 (98)
|+|++++|.+++ .+...
T Consensus 1 G~t~~d~L~~~~-~v~~~ 17 (68)
T PF14478_consen 1 GSTLLDALKKNG-KVETS 17 (68)
T ss_dssp T-BHHHHHHHCT--EEEE
T ss_pred CccHHHHHHhcC-CeEEe
Confidence 689999999977 66555
No 168
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=36.56 E-value=16 Score=22.40 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=10.3
Q ss_pred cccccEEEEee-eee
Q 034300 45 ACSTCAGKLVS-GSV 58 (98)
Q Consensus 45 ~Cg~C~v~v~~-G~~ 58 (98)
.||+|+|--.. |.+
T Consensus 69 ECGTCRvlc~~~~~i 83 (99)
T COG2440 69 ECGTCRVLCPHSGLI 83 (99)
T ss_pred eccceeEecCCCcce
Confidence 59999997754 544
No 169
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=36.34 E-value=42 Score=18.01 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=16.6
Q ss_pred CCCCEEEEEeCCCchHHHHH
Q 034300 11 PNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 11 ~~g~~~~i~~~~g~tlL~a~ 30 (98)
.+|+.+.+++++..|+.+.=
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK 22 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLK 22 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHH
T ss_pred CCCcEEEEEECCCCCHHHhh
Confidence 47878899999999998753
No 170
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=36.24 E-value=58 Score=21.13 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.5
Q ss_pred EEEeCCCchHHHHHHHcC-CC
Q 034300 17 EFEAQEDQYILDAAEEAG-VD 36 (98)
Q Consensus 17 ~i~~~~g~tlL~a~~~~g-i~ 36 (98)
.+...++.||++|+..+| +.
T Consensus 92 ~y~~~~~~tl~~ai~~AGG~~ 112 (165)
T TIGR03027 92 ALPYREGMTLLDVMIAVGGLT 112 (165)
T ss_pred eeeeCCCCcHHHHHHHcCCCC
Confidence 577889999999998875 54
No 171
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=34.83 E-value=56 Score=19.89 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=17.3
Q ss_pred EEEEeCCCchHHHHHHHcCC
Q 034300 16 HEFEAQEDQYILDAAEEAGV 35 (98)
Q Consensus 16 ~~i~~~~g~tlL~a~~~~gi 35 (98)
.++++.+|+||.+.+++.+.
T Consensus 37 ~~~tV~~GDTLW~IA~~y~~ 56 (103)
T PRK14125 37 VEITVQEGDTLWALADQYAG 56 (103)
T ss_pred EEEEECCCCCHHHHHHHhCC
Confidence 47899999999999998754
No 172
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=34.50 E-value=48 Score=27.13 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=29.9
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR 42 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~ 42 (98)
.|.++.|.|+ .++.|.|.|.||.|-+---++-+.|-
T Consensus 388 ~VyvfTPkG~--vi~LP~GatplDFAY~vHt~iG~~c~ 423 (701)
T COG0317 388 RVYVFTPKGK--VIDLPKGATPLDFAYAVHTDIGHRCI 423 (701)
T ss_pred eEEEECCCCC--EEeCCCCCcchhhhhhhhchhcceee
Confidence 4666689996 79999999999999887777777775
No 173
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=32.10 E-value=25 Score=20.59 Aligned_cols=13 Identities=38% Similarity=1.155 Sum_probs=10.3
Q ss_pred ccCCCcccccccc
Q 034300 37 LPYSCRAGACSTC 49 (98)
Q Consensus 37 i~~~C~~G~Cg~C 49 (98)
-+.+|..|.|..|
T Consensus 52 ~~~gC~sGsCk~C 64 (78)
T PRK15431 52 EPDGCLSGSCKSC 64 (78)
T ss_pred CCCCCCCCCCCCC
Confidence 4567998889887
No 174
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=31.85 E-value=23 Score=18.84 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=12.2
Q ss_pred cccccccEEEEeeee
Q 034300 43 AGACSTCAGKLVSGS 57 (98)
Q Consensus 43 ~G~Cg~C~v~v~~G~ 57 (98)
.|.|+.|.+.|....
T Consensus 22 ~~~C~gC~~~l~~~~ 36 (56)
T PF02591_consen 22 GGTCSGCHMELPPQE 36 (56)
T ss_pred CCccCCCCEEcCHHH
Confidence 689999999996543
No 175
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.47 E-value=41 Score=18.75 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=20.1
Q ss_pred hHHHHHHHcCCC---ccCCCc-cccccccEEE
Q 034300 25 YILDAAEEAGVD---LPYSCR-AGACSTCAGK 52 (98)
Q Consensus 25 tlL~a~~~~gi~---i~~~C~-~G~Cg~C~v~ 52 (98)
-.-..++++|++ +|.... ...||.|..-
T Consensus 16 ~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~ 47 (73)
T PF11823_consen 16 KAEKLLKKNGIPVRLIPTPREISAGCGLALRF 47 (73)
T ss_pred HHHHHHHHCCCcEEEeCCChhccCCCCEEEEE
Confidence 344577788987 677777 7779998543
No 176
>PF14120 YhzD: YhzD-like protein
Probab=31.43 E-value=52 Score=18.32 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=17.3
Q ss_pred CceEEEEEEcCCCCE---EEEEeCCCc
Q 034300 1 MAVYKIKLIGPNGEE---HEFEAQEDQ 24 (98)
Q Consensus 1 M~~~~v~i~~~~g~~---~~i~~~~g~ 24 (98)
|..|.+|.+.++|.. -+|++..++
T Consensus 1 M~~Y~lTaFe~~Ge~lldE~feA~~D~ 27 (61)
T PF14120_consen 1 MKTYFLTAFEKSGEKLLDETFEAANDE 27 (61)
T ss_pred CCceEEEEECCCCchhhhcceecCCHH
Confidence 778999998888863 256666543
No 177
>PRK10509 bacterioferritin-associated ferredoxin; Provisional
Probab=31.24 E-value=36 Score=18.84 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=19.2
Q ss_pred chHHHHHHHcCCC----ccCCCc-cccccccEEEE
Q 034300 24 QYILDAAEEAGVD----LPYSCR-AGACSTCAGKL 53 (98)
Q Consensus 24 ~tlL~a~~~~gi~----i~~~C~-~G~Cg~C~v~v 53 (98)
..|.++..++|.. +....+ .+.||+|.-.+
T Consensus 12 ~~I~~ai~~~g~~s~~~l~~~~~~g~~CG~C~~~i 46 (64)
T PRK10509 12 KKIRQAVRQFHPQSFQQLRKFVPVGNQCGKCIRAA 46 (64)
T ss_pred HHHHHHHHHcCCCCHHHHHHhcCCCCCccchHHHH
Confidence 3567777666654 444455 56799997654
No 178
>PF07593 UnbV_ASPIC: ASPIC and UnbV; InterPro: IPR011519 This conserved sequence is found associated with IPR001440 from INTERPRO in several paralogous proteins in Rhodopirellula baltica. It is also found associated with IPR000413 from INTERPRO in several eukaryotic integrin-like proteins (e.g. human ASPIC Q9NQ78 from SWISSPROT) and in several other bacterial proteins (e.g. Q84HN1 from SWISSPROT) [].
Probab=30.73 E-value=54 Score=18.21 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=14.7
Q ss_pred EEEEEcCCCCEEEEE-eCCCchH
Q 034300 5 KIKLIGPNGEEHEFE-AQEDQYI 26 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~-~~~g~tl 26 (98)
+|+|..|+|+..+++ +++|+++
T Consensus 46 ~v~V~WP~G~~~~~~~~~~n~~~ 68 (71)
T PF07593_consen 46 SVEVRWPDGKVQTLENVAANQTL 68 (71)
T ss_pred EEEEECCCCCEEEEEccCCCCEE
Confidence 578888999866663 3456543
No 179
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=30.28 E-value=30 Score=19.10 Aligned_cols=25 Identities=28% Similarity=0.705 Sum_probs=13.9
Q ss_pred hHHHHHHHcCCC----ccCCCccccccccE
Q 034300 25 YILDAAEEAGVD----LPYSCRAGACSTCA 50 (98)
Q Consensus 25 tlL~a~~~~gi~----i~~~C~~G~Cg~C~ 50 (98)
.+|+.+.+.|.- .+..| .|.|+.|.
T Consensus 33 ~mL~~l~~kG~I~~~~~~~~~-~~~C~~C~ 61 (69)
T PF09012_consen 33 AMLEQLIRKGYIRKVDMSSCC-GGSCSSCG 61 (69)
T ss_dssp HHHHHHHCCTSCEEEEEE--S-SSSSSS-S
T ss_pred HHHHHHHHCCcEEEecCCCCC-CCCCCCCC
Confidence 456666666654 23334 77888885
No 180
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=29.34 E-value=72 Score=25.08 Aligned_cols=29 Identities=21% Similarity=0.262 Sum_probs=24.2
Q ss_pred CCCEEEEEeCCCchHHHHHHHcCCCccCCCc
Q 034300 12 NGEEHEFEAQEDQYILDAAEEAGVDLPYSCR 42 (98)
Q Consensus 12 ~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~ 42 (98)
||+ ..+++.|.||=||+..+|.+.+-++-
T Consensus 4 ng~--~~~vp~g~Tl~Dal~~s~~~y~~gs~ 32 (503)
T TIGR03268 4 NGE--EVTVPDGSTVRDALKASDAPYIEGAT 32 (503)
T ss_pred CCe--EeecCCCCcHHHHHhhcCCCcCCCCE
Confidence 775 78899999999999999888766554
No 181
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=29.13 E-value=77 Score=25.07 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
++|++ ++|+ .+.++.|.|+++.+.+....
T Consensus 2 ~~i~~--~~g~--~~~~~~gtt~~dia~~~~~~ 30 (638)
T PRK00413 2 IKITL--PDGS--VREFEAGVTVADVAASISPG 30 (638)
T ss_pred cEEEe--CCCC--EEEeCCCCCHHHHHHHhhhh
Confidence 45655 5675 56688999999999875443
No 182
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=28.89 E-value=44 Score=20.61 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=14.5
Q ss_pred eCCCchHHHHHHH-----cCCCcc
Q 034300 20 AQEDQYILDAAEE-----AGVDLP 38 (98)
Q Consensus 20 ~~~g~tlL~a~~~-----~gi~i~ 38 (98)
+++|+|+.+||.+ .|+.+.
T Consensus 35 ve~gEt~~eaa~REl~EEtGl~v~ 58 (132)
T cd04661 35 REEGETLRQTAERTLKELCGNNLK 58 (132)
T ss_pred ccCCCCHHHHHHHHHHHhhCCCce
Confidence 5789999999977 466543
No 183
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=28.88 E-value=74 Score=17.55 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=17.3
Q ss_pred cCCCCEEEEEeCCCchHHHHHHH
Q 034300 10 GPNGEEHEFEAQEDQYILDAAEE 32 (98)
Q Consensus 10 ~~~g~~~~i~~~~g~tlL~a~~~ 32 (98)
.+||...++++.+..+..+.+..
T Consensus 3 llD~~~~~~~v~~~~t~~~l~~~ 25 (80)
T PF09379_consen 3 LLDGTTKTFEVDPKTTGQDLLEQ 25 (80)
T ss_dssp ESSEEEEEEEEETTSBHHHHHHH
T ss_pred CcCCCcEEEEEcCCCcHHHHHHH
Confidence 37888889999998876665543
No 184
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=28.86 E-value=1.2e+02 Score=17.20 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=36.5
Q ss_pred EEEEEcCCCCE-EEEE-eCCCchHHHHH----HHcCCCccCCCccccccccEEEEe-eeeeecCCCCCCChhhhhCCeEE
Q 034300 5 KIKLIGPNGEE-HEFE-AQEDQYILDAA----EEAGVDLPYSCRAGACSTCAGKLV-SGSVDQSDGSFLDDNQMEAGYLL 77 (98)
Q Consensus 5 ~v~i~~~~g~~-~~i~-~~~g~tlL~a~----~~~gi~i~~~C~~G~Cg~C~v~v~-~G~~~~~~~~~l~~~~~~~~~~L 77 (98)
+|+|...+|+. ..++ +++..|+-+.= .+.|++. +-. ++. .|.. ..+...|++-....+..+
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~--~~Q---------rLi~~Gk~-L~D~~tL~~y~i~~~~~i 69 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEP--ECQ---------RLFYRGKQ-MEDGHTLFDYNVGLNDII 69 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCH--HHe---------EEEeCCEE-CCCCCCHHHcCCCCCCEE
Confidence 45666678875 3564 78888887632 3334332 222 222 3332 334455555555666666
Q ss_pred eeeeEEC
Q 034300 78 TCISYPT 84 (98)
Q Consensus 78 aCq~~~~ 84 (98)
-...++.
T Consensus 70 ~l~~~~~ 76 (78)
T cd01797 70 QLLVRQD 76 (78)
T ss_pred EEEEecC
Confidence 6665544
No 185
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=28.76 E-value=1.2e+02 Score=17.20 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=14.5
Q ss_pred EEEEEEcCCCCEEEEEeCCC
Q 034300 4 YKIKLIGPNGEEHEFEAQED 23 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g 23 (98)
++|+....+|+.+++.+.+.
T Consensus 56 yev~~~~~dG~~~ev~vD~~ 75 (83)
T PF13670_consen 56 YEVEARDKDGKKVEVYVDPA 75 (83)
T ss_pred EEEEEEECCCCEEEEEEcCC
Confidence 56776678888777777664
No 186
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=28.68 E-value=1.1e+02 Score=16.75 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=25.2
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeee
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVD 59 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~ 59 (98)
+|+| ||+ .++++++.||.+.-.+.+-+ .-+.|+.|-+.
T Consensus 2 ~I~v---N~k--~~~~~~~~tl~~lr~~~k~~------------~DI~I~NGF~~ 39 (57)
T PF14453_consen 2 KIKV---NEK--EIETEENTTLFELRKESKPD------------ADIVILNGFPT 39 (57)
T ss_pred EEEE---CCE--EEEcCCCcCHHHHHHhhCCC------------CCEEEEcCccc
Confidence 3555 775 78999999999876654331 12667777554
No 187
>TIGR01003 PTS_HPr_family Phosphotransferase System HPr (HPr) Family. The HPr family are bacterial proteins (or domains of proteins) which function in phosphoryl transfer system (PTS) systems. They include energy-coupling components which catalyze sugar uptake via a group translocation mechanism. The functions of most of these proteins are not known, but they presumably function in PTS-related regulatory capacities. All seed members are stand-alone HPr proteins, although the model also recognizes HPr domains of PTS fusion proteins. This family includes the related NPr protein.
Probab=28.28 E-value=41 Score=19.31 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=21.4
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAG 34 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~g 34 (98)
|...+++|..+.| +.++|-.-|.+.+.+..
T Consensus 1 M~~~~~~i~~~~G----lHaRpA~~lv~~a~~f~ 30 (82)
T TIGR01003 1 MLSKEVTIINKVG----LHARPAAILVKLASGFD 30 (82)
T ss_pred CceEEEEEcCCCc----ccHHHHHHHHHHHHhCC
Confidence 6677888866666 66777777777776543
No 188
>PRK13782 phosphocarrier protein Chr; Provisional
Probab=27.78 E-value=40 Score=19.36 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=22.0
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAG 34 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~g 34 (98)
|...+++|..+.| +.++|-.-|.+.+.+.+
T Consensus 1 M~~~~~~i~~~~G----lHaRPA~~lv~~a~~f~ 30 (82)
T PRK13782 1 MVQKRVEVSLKTG----LQARPAALFVQEANRFH 30 (82)
T ss_pred CceEEEEEcCCCc----ccHHHHHHHHHHHHhCC
Confidence 6666788866666 67888888888887543
No 189
>PF11966 SSURE: Fibronectin-binding repeat; InterPro: IPR021021 Streptococcal surface repeat domain - SSURE - is a protein fragment found to bind to extracellular matrix protein fibronectin but not to collagen or submaxillary mucin in Streptococci. Anti-SSURE antibodies recognised the corresponding protein on the surface of streptococcal cells. The full-length proteins are thus fibronectin-binding surface adhesins []. The proteins are further characterised by having an N-terminal motif resembling [YF]SIRKxxxGxxS[VIA] IPR005877 from INTERPRO and a C-terminal LPXTG motif-containing region which is a characteristic of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall (see IPR019931 from INTERPRO).
Probab=27.22 E-value=71 Score=18.64 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.4
Q ss_pred EeCCCchHHHHHHHcCCC
Q 034300 19 EAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 19 ~~~~g~tlL~a~~~~gi~ 36 (98)
.-..|+.|||.++.+|-.
T Consensus 32 ~Gk~~q~LLDqlraNGt~ 49 (81)
T PF11966_consen 32 AGKQGQALLDQLRANGTH 49 (81)
T ss_pred cCcchHHHHHHHHhCCce
Confidence 346689999999998864
No 190
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=27.18 E-value=40 Score=13.25 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=6.1
Q ss_pred chHHHHHHH
Q 034300 24 QYILDAAEE 32 (98)
Q Consensus 24 ~tlL~a~~~ 32 (98)
.+||+|+..
T Consensus 4 dsllealqt 12 (15)
T PF06345_consen 4 DSLLEALQT 12 (15)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 378888754
No 191
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=26.91 E-value=94 Score=24.40 Aligned_cols=37 Identities=11% Similarity=0.270 Sum_probs=26.8
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR 42 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~ 42 (98)
.++|+|..+++ +++|.|....|+++. +..|...+.|.
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~ql--KE~I~~~f~a~ 51 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQL--KELIAQRFGAP 51 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHH--HHHHHHhcCCC
Confidence 47899988888 589999999999984 33444444444
No 192
>PRK11649 putative peptidase; Provisional
Probab=26.14 E-value=1e+02 Score=23.66 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHcCCC
Q 034300 16 HEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 16 ~~i~~~~g~tlL~a~~~~gi~ 36 (98)
+++.+..|+||-..+.++|++
T Consensus 96 ~~~~Vk~GDTl~~iL~r~Gi~ 116 (439)
T PRK11649 96 HEYVVSTGDTLSSILNQYGID 116 (439)
T ss_pred EEEEeCCCCCHHHHHHHcCCC
Confidence 478899999999999999998
No 193
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=25.22 E-value=81 Score=19.85 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=16.8
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYIL 27 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL 27 (98)
+|.+.++.|||.++.|...+-.-|+
T Consensus 44 ~Ypv~lV~pDGSTI~Iry~EPR~ii 68 (116)
T PF09776_consen 44 LYPVLLVRPDGSTINIRYHEPRRII 68 (116)
T ss_pred hccEEEEecCCCEEEEeccChHHHh
Confidence 4678888999986655555544444
No 194
>KOG4616 consensus Mitochondrial ribosomal protein L55 [Translation, ribosomal structure and biogenesis]
Probab=25.09 E-value=76 Score=19.92 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=11.4
Q ss_pred EEEEEEcCCCCEEEEEe
Q 034300 4 YKIKLIGPNGEEHEFEA 20 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~ 20 (98)
|.+.|+.|||.+.-|.+
T Consensus 58 y~~kfi~pdgstimipa 74 (137)
T KOG4616|consen 58 YPTKFIQPDGSTIMIPA 74 (137)
T ss_pred cceeEEcCCCCeEeeec
Confidence 45678899998444443
No 195
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=24.95 E-value=1.2e+02 Score=20.97 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=17.9
Q ss_pred EEEeCCCchHHHHHHHcCCCcc
Q 034300 17 EFEAQEDQYILDAAEEAGVDLP 38 (98)
Q Consensus 17 ~i~~~~g~tlL~a~~~~gi~i~ 38 (98)
.++.+++.||++|+.++|=.-+
T Consensus 176 ~~~~~~~~tl~~al~~aGG~~~ 197 (239)
T TIGR03028 176 AYRLERNMTVMQALAQGGGLTP 197 (239)
T ss_pred EEEeCCCCCHHHHHHhcCCCCc
Confidence 5778899999999998765544
No 196
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=24.43 E-value=86 Score=19.79 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYIL 27 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL 27 (98)
+.|+|...+|+...-.+++|-.|+
T Consensus 24 ~~vtI~~~dG~~v~~~IP~GpeLi 47 (118)
T PF01333_consen 24 YEVTIETSDGETVVETIPAGPELI 47 (118)
T ss_dssp EEEEEETTTSEEEEEEEESSS-BS
T ss_pred EEEEEECCCCCEEEEecCCCCeEE
Confidence 568887788876666788887776
No 197
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=24.08 E-value=61 Score=24.15 Aligned_cols=28 Identities=18% Similarity=0.546 Sum_probs=20.8
Q ss_pred eCCCchHHHHH---------------HHcCCCccCCCcccccc
Q 034300 20 AQEDQYILDAA---------------EEAGVDLPYSCRAGACS 47 (98)
Q Consensus 20 ~~~g~tlL~a~---------------~~~gi~i~~~C~~G~Cg 47 (98)
+.||+|+++.. +.+||.+|.+|.--.|.
T Consensus 106 ikPGmtm~ei~e~iEnttR~li~e~gl~aGi~FPtG~SlN~cA 148 (397)
T KOG2775|consen 106 IKPGMTMIEICETIENTTRKLILENGLNAGIGFPTGCSLNHCA 148 (397)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHhccccccccCCCcccccchh
Confidence 56787777765 34799999999865664
No 198
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=23.87 E-value=2.1e+02 Score=18.46 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAE 31 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~ 31 (98)
..++|..+||...++.+.+..|.-+.+.
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~ 31 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLE 31 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHH
Confidence 4566666899988899998877666553
No 199
>PF12916 DUF3834: Protein of unknown function (DUF3834); InterPro: IPR024533 This family is likely to be related to solute-binding lipo-proteins.; PDB: 3MST_A.
Probab=23.77 E-value=37 Score=23.40 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=12.2
Q ss_pred eCCCchHHHHHHHcCCCccCCCc
Q 034300 20 AQEDQYILDAAEEAGVDLPYSCR 42 (98)
Q Consensus 20 ~~~g~tlL~a~~~~gi~i~~~C~ 42 (98)
+..|.++=|.+.+.|+.+|.+|+
T Consensus 124 ~~~G~~fEdl~~~~g~~~PgsCg 146 (201)
T PF12916_consen 124 FSKGETFEDLLGSLGLYAPGSCG 146 (201)
T ss_dssp T---EEHHHHHHHTT------EE
T ss_pred hccchhHHHHHhhcCCCCChhhh
Confidence 35689998899999999998887
No 200
>PF14601 TFX_C: DNA_binding protein, TFX, C-term; PDB: 1NR3_A.
Probab=23.54 E-value=88 Score=18.45 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=13.0
Q ss_pred EEEEeCCCchHHH-------HHHHcCCCccCC
Q 034300 16 HEFEAQEDQYILD-------AAEEAGVDLPYS 40 (98)
Q Consensus 16 ~~i~~~~g~tlL~-------a~~~~gi~i~~~ 40 (98)
..+++++|+.|++ .+.++||.++|+
T Consensus 15 v~i~i~~GtDl~diP~~if~~aDe~gIKV~y~ 46 (84)
T PF14601_consen 15 VRITIPAGTDLFDIPEIIFKEADEAGIKVRYD 46 (84)
T ss_dssp EEEEE--GGGHHHHHHHHHHHHHHHS-S----
T ss_pred EEEEEcCCCcHHHhHHHHHHHHhHcCCeeccC
Confidence 4678888887665 456689998875
No 201
>PRK10850 PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr; Provisional
Probab=23.46 E-value=52 Score=19.20 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=22.2
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAG 34 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~g 34 (98)
|...+++|..+.| +.++|-..|.+.+.+..
T Consensus 1 M~~~~v~I~n~~G----LHARPAa~lv~~a~~~~ 30 (85)
T PRK10850 1 MFQQEVTITAPNG----LHTRPAAQFVKEAKGFT 30 (85)
T ss_pred CceEEEEECCCCc----ccHHHHHHHHHHHHhCC
Confidence 6667788866666 67888888888877653
No 202
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=23.05 E-value=26 Score=25.32 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=26.2
Q ss_pred CceEEEEEEcCCCC--EEEEEeCCCchHHHHHHHcCCC
Q 034300 1 MAVYKIKLIGPNGE--EHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 1 M~~~~v~i~~~~g~--~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
|++.+|-++. .|. +++|....|.+++++|.+.|..
T Consensus 1 m~~~~i~vl~-GG~S~E~~vSl~s~~~v~~~l~~~~~~ 37 (333)
T PRK01966 1 MMKMRVALLF-GGRSAEHEVSLVSAKSVLKALDKEKYE 37 (333)
T ss_pred CCCcEEEEEe-CCCCCcchhhHHHHHHHHHHhcccCCE
Confidence 6666776643 442 4678888999999999988876
No 203
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=22.96 E-value=94 Score=17.41 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
.+.|.+....| +.=+.|+++.+++.+.|++
T Consensus 2 ~~~v~V~~k~g----v~Dp~G~ti~~~l~~lg~~ 31 (73)
T PRK06423 2 KFKVEVTYKPG----VEDPEALTILKNLNILGYN 31 (73)
T ss_pred eEEEEEEECCC----CcChHHHHHHHHHHHcCCC
Confidence 44555532333 4447789999999998765
No 204
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=22.33 E-value=2e+02 Score=17.62 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=22.0
Q ss_pred EEEEEcCCCCEEEEEeCC---CchHHH-HHHHcCCCc
Q 034300 5 KIKLIGPNGEEHEFEAQE---DQYILD-AAEEAGVDL 37 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~---g~tlL~-a~~~~gi~i 37 (98)
.|+|+..+|+.+.|++.. ++.|+. +|++.|+.-
T Consensus 2 vi~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 2 VIRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 567778999988999876 455555 666678775
No 205
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=22.20 E-value=49 Score=19.56 Aligned_cols=31 Identities=6% Similarity=0.164 Sum_probs=21.6
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC
Q 034300 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 2 ~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
...+++|..+.| +.++|-.-|.+.+.+..-.
T Consensus 3 ~~~~v~V~n~~G----LHARPAa~lv~~a~~f~s~ 33 (90)
T PRK10897 3 VKQTVEIKNKLG----MHARPAMKLFELVQGFDAE 33 (90)
T ss_pred EEEEEEECCCCC----ccHHHHHHHHHHHhhCCCE
Confidence 366788866666 7788888888887765433
No 206
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=21.78 E-value=1.7e+02 Score=16.65 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
-+|.|..|||+...-......||-+.
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l 30 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDV 30 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHH
Confidence 45667679998777788888887554
No 207
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=21.65 E-value=2.1e+02 Score=17.60 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCC-EEEEEeCCCchHHHHHH
Q 034300 3 VYKIKLIGPNGE-EHEFEAQEDQYILDAAE 31 (98)
Q Consensus 3 ~~~v~i~~~~g~-~~~i~~~~g~tlL~a~~ 31 (98)
.+.++|...+|. ...+.+++..|+-+.-+
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe 31 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKE 31 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHH
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHH
Confidence 357888888998 66899999988776543
No 208
>COG4824 Phage-related holin (Lysis protein) [General function prediction only]
Probab=21.59 E-value=51 Score=21.16 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=18.2
Q ss_pred EeCCCchHHHHHHHcCCCccC
Q 034300 19 EAQEDQYILDAAEEAGVDLPY 39 (98)
Q Consensus 19 ~~~~g~tlL~a~~~~gi~i~~ 39 (98)
-+.++-+|++-+-+-|+++|.
T Consensus 95 iaNE~isI~EN~s~lGlpvPe 115 (133)
T COG4824 95 IANEGISILENASRLGLPVPE 115 (133)
T ss_pred HHhhhHHHHHHHHHhCCCchH
Confidence 357889999999999999985
No 209
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=21.47 E-value=1.1e+02 Score=19.39 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=21.9
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCc
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i 37 (98)
|...++-++.|++-.. --. ..||+.+.++|+.|
T Consensus 1 ~~e~Tl~lIKPda~~~---~~~-g~Il~~i~~~Gf~I 33 (134)
T PRK14540 1 EKERTFVALKPDAVER---KLI-GKIIQRFENKGFEI 33 (134)
T ss_pred CceeEEEEECcchhhc---Cch-HHHHHHHHHcCCEE
Confidence 5566777778887310 112 36899999988875
No 210
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=21.40 E-value=1e+02 Score=17.44 Aligned_cols=18 Identities=17% Similarity=0.422 Sum_probs=12.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCc
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQ 24 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~ 24 (98)
++|+| .|+.++|.+++++
T Consensus 2 V~v~I---~G~~y~i~~~~~~ 19 (89)
T PF05164_consen 2 VKVTI---LGREYRIKCPDED 19 (89)
T ss_dssp EEEEE---TTEEEEECETGCG
T ss_pred eEEEE---CCEEEEeecCCCC
Confidence 34555 7988888866653
No 211
>PF14044 NETI: NETI protein
Probab=21.37 E-value=92 Score=17.11 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=12.0
Q ss_pred EEeCCCchHHHHHHH
Q 034300 18 FEAQEDQYILDAAEE 32 (98)
Q Consensus 18 i~~~~g~tlL~a~~~ 32 (98)
|++.+++||-+.|.+
T Consensus 2 FeV~enETI~~CL~R 16 (57)
T PF14044_consen 2 FEVEENETISDCLAR 16 (57)
T ss_pred eeccCCCcHHHHHHH
Confidence 678899999887755
No 212
>PRK13780 phosphocarrier protein HPr; Provisional
Probab=21.02 E-value=60 Score=19.03 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=21.9
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAG 34 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~g 34 (98)
|...+++|..+.| +.++|-.-|.+.+.+..
T Consensus 1 M~~~~~~I~n~~G----LHARPAa~lv~~a~~~~ 30 (88)
T PRK13780 1 MASKDFHITAETG----IHARPATLLVQTASKFD 30 (88)
T ss_pred CcEEEEEECCCCc----ccHHHHHHHHHHHHhCC
Confidence 6677788866666 67888878888876643
No 213
>PRK13669 hypothetical protein; Provisional
Probab=20.80 E-value=32 Score=20.14 Aligned_cols=32 Identities=38% Similarity=0.829 Sum_probs=20.2
Q ss_pred HHHHH-HcCCC-ccCCCccccccccEEE---Eeeeeee
Q 034300 27 LDAAE-EAGVD-LPYSCRAGACSTCAGK---LVSGSVD 59 (98)
Q Consensus 27 L~a~~-~~gi~-i~~~C~~G~Cg~C~v~---v~~G~~~ 59 (98)
.+.++ .-+++ +.++|- +.||.|+.+ ++.|++-
T Consensus 20 ~~~Le~dP~~dVie~gCl-s~CG~C~~~~FAlVng~~V 56 (78)
T PRK13669 20 FEKLEKDPNLDVLEYGCL-GYCGICSEGLFALVNGEVV 56 (78)
T ss_pred HHHHHhCCCceEEEcchh-hhCcCcccCceEEECCeEe
Confidence 44343 24666 789995 568888765 4677654
No 214
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=20.78 E-value=46 Score=24.09 Aligned_cols=20 Identities=40% Similarity=0.762 Sum_probs=15.7
Q ss_pred HHHHcCCCccCCCccccccc
Q 034300 29 AAEEAGVDLPYSCRAGACST 48 (98)
Q Consensus 29 a~~~~gi~i~~~C~~G~Cg~ 48 (98)
++..++|.+-.+|+++.|.+
T Consensus 133 a~q~~~I~iGtsCkN~GCs~ 152 (320)
T KOG1667|consen 133 AAQSADIQIGTSCKNNGCST 152 (320)
T ss_pred hhcCcCceeCCcccCCCcce
Confidence 33456899999999888875
No 215
>KOG3217 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=20.63 E-value=85 Score=20.78 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=19.6
Q ss_pred CCCchHHHHHHHcCCCccCCCcc
Q 034300 21 QEDQYILDAAEEAGVDLPYSCRA 43 (98)
Q Consensus 21 ~~g~tlL~a~~~~gi~i~~~C~~ 43 (98)
.|+-.-+++++++||.+.|-|+.
T Consensus 55 ~PD~R~~s~lK~hGI~~~H~aRq 77 (159)
T KOG3217|consen 55 SPDPRTLSILKKHGIKIDHLARQ 77 (159)
T ss_pred CCChHHHHHHHHcCCcchhhccc
Confidence 45667899999999999999883
No 216
>PF07362 CcdA: Post-segregation antitoxin CcdA; InterPro: IPR009956 This entry consists of several Enterobacterial post-segregation antitoxin CcdA proteins. The F plasmid-carried bacterial toxin, the CcdB protein, is known to act on DNA gyrase in two different ways. CcdB poisons the gyrase-DNA complex, blocking the passage of polymerases and leading to double-strand breakage of the DNA. Alternatively, in cells that overexpress CcdB, the A subunit of DNA gyrase (GyrA) has been found as an inactive complex with CcdB. Both poisoning and inactivation can be prevented and reversed in the presence of the F plasmid-encoded antidote, the CcdA protein [].; PDB: 3HPW_C 2H3C_A 2H3A_B 2ADN_B 2ADL_B.
Probab=20.58 E-value=90 Score=17.72 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=17.1
Q ss_pred EEEeCCCchHHHHHHHcCCCccCCCc
Q 034300 17 EFEAQEDQYILDAAEEAGVDLPYSCR 42 (98)
Q Consensus 17 ~i~~~~g~tlL~a~~~~gi~i~~~C~ 42 (98)
.+++.-+..||+.|++.||+|...+.
T Consensus 4 ~vnvtl~~dLl~~Ak~lgiNlS~~~e 29 (72)
T PF07362_consen 4 RVNVTLDSDLLAEAKALGINLSATLE 29 (72)
T ss_dssp EEEEEESSSTHHHHHHCT--SHHHHH
T ss_pred eeEEeECHHHHHHHHHcCCCHHHHHH
Confidence 34444455799999999999876554
No 217
>CHL00075 rpl21 ribosomal protein L21
Probab=20.49 E-value=85 Score=19.40 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=15.1
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchH
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYI 26 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tl 26 (98)
|+||-| +...|+ ++.+.+|+.|
T Consensus 1 ~~myAI--i~~gGk--QykV~~Gd~i 22 (108)
T CHL00075 1 MMTYAI--IEAGGK--QLWVEPGRFY 22 (108)
T ss_pred CcEEEE--EEECCE--EEEEeCCCEE
Confidence 677765 345675 6788888765
No 218
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=20.47 E-value=1.3e+02 Score=14.83 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=15.5
Q ss_pred CCCCEEEEEeCCCchHHHHHHHc
Q 034300 11 PNGEEHEFEAQEDQYILDAAEEA 33 (98)
Q Consensus 11 ~~g~~~~i~~~~g~tlL~a~~~~ 33 (98)
++|+ .+.++.|.|+.+.+...
T Consensus 6 ~~~~--~~~~~~~~t~~~~~~~~ 26 (61)
T cd01667 6 PDGS--VKEFPKGTTPLDIAKSI 26 (61)
T ss_pred CCCC--EEEeCCCCCHHHHHHHH
Confidence 5665 46678899999977654
No 219
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.46 E-value=1.1e+02 Score=15.63 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=16.9
Q ss_pred EEEEeCCCchHHHHHHHcCCCc
Q 034300 16 HEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 16 ~~i~~~~g~tlL~a~~~~gi~i 37 (98)
..+.++..+.+++.++++|+.+
T Consensus 43 v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 43 LIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred EEEEeCCHHHHHHHHHHCCceE
Confidence 4566777778999999998754
No 220
>PF04324 Fer2_BFD: BFD-like [2Fe-2S] binding domain; InterPro: IPR007419 The two Fe ions are each coordinated by two conserved cysteine residues. This domain occurs alone in small proteins such as bacterioferritin-associated ferredoxin (BFD, P13655 from SWISSPROT). The function of BFD is not known, but it may be a general redox and/or regulatory component involved in the iron storage or mobilisation functions of bacterioferritin in bacteria []. This domain is also found in nitrate reductase proteins in association with the nitrite and sulphite reductase 4Fe-4S domain (IPR006067 from INTERPRO), nitrite/sulphite reductase ferredoxin-like half domain (IPR005117 from INTERPRO) and pyridine nucleotide-disulphide oxidoreductase (IPR001327 from INTERPRO). It is also found in NifU nitrogen fixation proteins, in association with NifU-like N-terminal domain (IPR002871 from INTERPRO) and C-terminal domain (IPR001075 from INTERPRO).; PDB: 2HU9_A.
Probab=20.23 E-value=22 Score=18.69 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=10.0
Q ss_pred hHHHHHHH-cCCC----ccCCCc-cccccccEEEE
Q 034300 25 YILDAAEE-AGVD----LPYSCR-AGACSTCAGKL 53 (98)
Q Consensus 25 tlL~a~~~-~gi~----i~~~C~-~G~Cg~C~v~v 53 (98)
.|.+++++ +|.. +....+ ...||.|+-.+
T Consensus 13 ~I~~ai~~~~g~~t~~~i~~~t~~g~~Cg~C~~~v 47 (55)
T PF04324_consen 13 EIRDAIREDNGARTLEEIKRATGAGTGCGSCVPEV 47 (55)
T ss_dssp HHHHHHHH-H-----HHHHHHHTTSS-TH------
T ss_pred HHHHHHHhhcccchHHHHHHHcCCCCCCCCccccc
Confidence 46666654 5544 223333 44699998854
No 221
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=20.05 E-value=75 Score=19.88 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=19.4
Q ss_pred cccccEEEEeeeeeecCCCCCCChhhh
Q 034300 45 ACSTCAGKLVSGSVDQSDGSFLDDNQM 71 (98)
Q Consensus 45 ~Cg~C~v~v~~G~~~~~~~~~l~~~~~ 71 (98)
.|..|...| +|.....+-..|++++.
T Consensus 14 ~C~~C~t~i-~G~F~l~~~~~L~~E~~ 39 (113)
T PF09862_consen 14 KCPSCGTEI-EGEFELPWFARLSPEQL 39 (113)
T ss_pred EcCCCCCEE-EeeeccchhhcCCHHHH
Confidence 688998886 88888776666776543
Done!