Query 034300
Match_columns 98
No_of_seqs 224 out of 1145
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 20:37:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1czp_A Ferredoxin I; [2Fe-2S] 100.0 3.4E-30 1.2E-34 156.5 12.3 96 3-98 2-98 (98)
2 1frr_A Ferredoxin I; electron 100.0 3.7E-30 1.3E-34 155.2 11.6 95 3-98 1-95 (95)
3 1a70_A Ferredoxin; iron-sulfur 100.0 3.3E-30 1.1E-34 156.3 10.9 95 3-98 2-96 (97)
4 1awd_A Ferredoxin; electron tr 100.0 3.9E-30 1.3E-34 155.2 11.1 94 4-98 1-94 (94)
5 1iue_A Ferredoxin; electron tr 100.0 5.1E-30 1.7E-34 155.8 9.7 95 3-98 2-96 (98)
6 1frd_A Heterocyst [2Fe-2S] fer 100.0 5E-29 1.7E-33 151.2 11.5 96 2-97 1-97 (98)
7 1wri_A Ferredoxin II, ferredox 100.0 7.7E-29 2.6E-33 149.3 10.8 93 3-97 1-93 (93)
8 1jq4_A Methane monooxygenase c 100.0 7.9E-29 2.7E-33 150.4 5.2 94 1-94 1-97 (98)
9 3hui_A Ferredoxin; cytochrome 99.9 3E-28 1E-32 154.2 3.7 95 2-96 20-126 (126)
10 2y5c_A Adrenodoxin-like protei 99.9 2.4E-28 8.2E-33 150.9 3.0 94 3-96 5-109 (109)
11 3lxf_A Ferredoxin; iron, iron- 99.9 3.2E-28 1.1E-32 149.5 3.2 91 5-95 2-104 (104)
12 2bt6_A Adrenodoxin 1; rutheniu 99.9 2.5E-27 8.7E-32 146.0 3.5 90 3-92 6-108 (108)
13 3ah7_A [2Fe-2S]ferredoxin; [2F 99.9 1.5E-26 5.3E-31 143.5 6.7 93 4-96 2-105 (113)
14 1xlq_A Putidaredoxin, PDX; [2F 99.9 4.2E-27 1.4E-31 144.5 3.6 91 5-95 2-105 (106)
15 1uwm_A Ferredoxin VI, FDVI; el 99.9 5.1E-27 1.8E-31 144.1 3.2 91 5-95 2-105 (106)
16 1krh_A Benzoate 1,2-dioxygenas 99.9 2.1E-25 7.1E-30 159.0 11.7 94 1-94 1-98 (338)
17 1b9r_A Protein (terpredoxin); 99.9 1.9E-27 6.5E-32 145.8 -0.2 90 5-94 2-104 (105)
18 2wlb_A ETP1-FD, electron trans 99.9 6.5E-26 2.2E-30 138.5 5.9 90 3-92 3-103 (103)
19 3zyy_X Iron-sulfur cluster bin 99.9 3.9E-25 1.3E-29 169.0 10.7 94 1-97 1-95 (631)
20 1doi_A 2Fe-2S ferredoxin; halo 99.9 1.7E-25 5.9E-30 141.9 7.2 89 4-94 28-118 (128)
21 1i7h_A Ferredoxin; 2Fe-2S,elec 99.9 3.1E-25 1E-29 137.3 7.3 93 4-96 2-105 (111)
22 3n9z_C Adrenodoxin; cytochrome 99.9 4.1E-26 1.4E-30 143.9 -3.5 94 2-95 4-110 (123)
23 2pia_A Phthalate dioxygenase r 99.9 5.8E-23 2E-27 145.9 9.8 84 3-91 237-321 (321)
24 1l5p_A Ferredoxin; [2Fe-2S] cl 99.9 7.7E-24 2.6E-28 127.4 3.7 80 5-87 2-86 (93)
25 1t3q_A Quinoline 2-oxidoreduct 99.4 6.8E-13 2.3E-17 87.2 6.3 68 5-91 11-82 (168)
26 3i9v_3 NADH-quinone oxidoreduc 99.4 1E-12 3.5E-17 102.7 6.5 81 11-94 6-98 (783)
27 1kf6_B Fumarate reductase iron 99.2 1.2E-11 4E-16 84.8 6.3 73 1-91 3-92 (243)
28 1ffv_A CUTS, iron-sulfur prote 99.2 2.4E-11 8.3E-16 79.5 6.5 72 1-91 1-76 (163)
29 1n62_A Carbon monoxide dehydro 99.2 2.6E-11 8.9E-16 79.5 6.4 72 1-91 1-76 (166)
30 1rm6_C 4-hydroxybenzoyl-COA re 99.2 2.3E-11 8E-16 79.4 5.9 68 5-91 4-75 (161)
31 3hrd_D Nicotinate dehydrogenas 99.2 3.4E-11 1.2E-15 78.6 6.5 52 1-53 1-54 (160)
32 3c8y_A Iron hydrogenase 1; dit 99.2 3.7E-11 1.3E-15 91.3 7.5 66 10-94 5-77 (574)
33 2bs2_B Quinol-fumarate reducta 99.1 1.1E-10 3.9E-15 79.8 6.1 67 1-85 1-83 (241)
34 2wdq_B Succinate dehydrogenase 98.9 1.5E-09 5.1E-14 74.0 6.1 65 3-85 2-81 (238)
35 2h88_B Succinate dehydrogenase 98.8 7.9E-09 2.7E-13 71.2 6.2 59 15-91 32-101 (252)
36 3vr8_B Iron-sulfur subunit of 98.6 1.2E-07 4E-12 66.7 6.2 42 15-57 56-104 (282)
37 1vlb_A Aldehyde oxidoreductase 98.5 2.3E-07 8E-12 73.8 7.1 50 1-53 1-52 (907)
38 3nvw_A Xanthine dehydrogenase/ 98.4 2.2E-07 7.5E-12 60.7 4.7 48 6-54 5-55 (164)
39 2w3s_A Xanthine dehydrogenase; 98.4 3.6E-07 1.2E-11 68.0 6.1 47 6-53 3-51 (462)
40 1dgj_A Aldehyde oxidoreductase 98.3 6.3E-07 2.2E-11 71.3 5.8 50 1-53 1-52 (907)
41 1y56_A Hypothetical protein PH 97.9 2.1E-05 7.1E-10 58.3 5.5 67 6-92 16-88 (493)
42 3unc_A Xanthine dehydrogenase/ 97.7 3.1E-05 1.1E-09 63.9 4.3 49 5-54 5-56 (1332)
43 3zyv_A AOH1; oxidoreductase, m 97.1 0.00054 1.9E-08 56.6 4.6 48 6-54 10-60 (1335)
44 2gag_A Heterotetrameric sarcos 96.8 0.0022 7.5E-08 51.3 6.3 71 5-91 22-106 (965)
45 3ny5_A Serine/threonine-protei 95.5 0.016 5.5E-07 34.4 3.7 49 1-54 11-59 (96)
46 1c1y_B Proto-onkogene serine/t 94.7 0.043 1.5E-06 31.3 3.7 44 6-54 4-47 (77)
47 1wxm_A A-RAF proto-oncogene se 94.4 0.051 1.8E-06 31.6 3.7 41 5-54 9-53 (86)
48 2l05_A Serine/threonine-protei 93.8 0.077 2.6E-06 31.3 3.7 41 5-54 19-63 (95)
49 1rrb_A RAF-1 RBD, RAF proto-on 92.9 0.14 4.9E-06 30.8 3.9 41 5-54 20-64 (107)
50 2al3_A TUG long isoform; TUG U 92.1 0.16 5.6E-06 29.7 3.4 32 5-36 11-46 (90)
51 3u7z_A Putative metal binding 91.7 0.4 1.4E-05 28.5 4.9 32 2-34 7-40 (101)
52 2kmm_A Guanosine-3',5'-BIS(dip 90.6 0.34 1.2E-05 26.2 3.6 28 8-37 5-32 (73)
53 1uh6_A Ubiquitin-like 5; beta- 90.6 0.4 1.4E-05 28.4 4.1 39 1-39 26-68 (100)
54 2l32_A Small archaeal modifier 90.4 0.51 1.8E-05 26.3 4.3 34 3-38 2-35 (74)
55 3hvz_A Uncharacterized protein 90.0 0.45 1.5E-05 26.9 3.8 32 5-38 7-38 (78)
56 2uyz_B Small ubiquitin-related 90.0 0.54 1.8E-05 25.7 4.1 37 1-37 1-41 (79)
57 3plu_A Ubiquitin-like modifier 89.9 0.56 1.9E-05 27.5 4.3 36 2-37 20-59 (93)
58 3kwl_A Uncharacterized protein 87.8 0.95 3.3E-05 33.9 5.3 39 15-61 44-82 (514)
59 3phx_B Ubiquitin-like protein 85.3 1.8 6.1E-05 23.5 4.4 35 3-37 4-42 (79)
60 3kdv_A DDRB, DNA damage respon 85.3 1.2 4E-05 28.8 3.9 31 3-33 7-37 (184)
61 1wh3_A 59 kDa 2'-5'-oligoadeny 84.1 1.7 5.7E-05 24.1 4.0 29 2-30 6-34 (87)
62 1v2y_A 3300001G02RIK protein; 84.0 2.1 7.3E-05 25.3 4.6 27 3-29 7-33 (105)
63 1tyg_B YJBS; alpha beta barrel 84.0 0.83 2.8E-05 26.3 2.6 28 4-36 21-49 (87)
64 3mtn_B UBA80, ubcep1, ubiquiti 83.4 2.3 8E-05 23.1 4.4 35 3-37 3-41 (85)
65 2hj8_A Interferon-induced 17 k 83.4 1.8 6.3E-05 24.2 4.0 28 3-30 4-31 (88)
66 2k5p_A THis protein, thiamine- 82.5 1.3 4.4E-05 24.8 3.0 28 5-37 2-31 (78)
67 2gow_A HCG-1 protein, ubiquiti 82.4 2.4 8.3E-05 25.9 4.5 28 3-30 17-44 (125)
68 3u30_A Ubiquitin, linear DI-ub 81.6 7.5 0.00026 24.3 8.8 76 3-89 20-99 (172)
69 1ep3_B Dihydroorotate dehydrog 81.3 0.86 2.9E-05 30.5 2.3 28 26-54 206-239 (262)
70 2wyq_A HHR23A, UV excision rep 81.3 2.9 9.9E-05 22.9 4.2 27 3-29 5-31 (85)
71 1wgd_A Homocysteine-responsive 80.5 2.2 7.5E-05 24.1 3.6 29 1-29 5-35 (93)
72 3dbh_I NEDD8; cell cycle, acti 79.2 4.5 0.00015 22.2 4.6 35 3-37 12-50 (88)
73 2bwf_A Ubiquitin-like protein 79.1 2.5 8.5E-05 22.6 3.4 26 4-30 5-30 (77)
74 1wia_A Hypothetical ubiquitin- 78.7 3.3 0.00011 23.4 4.0 31 2-32 6-36 (95)
75 4dwf_A HLA-B-associated transc 78.0 3.8 0.00013 22.7 4.1 28 3-30 5-32 (90)
76 1ryj_A Unknown; beta/alpha pro 77.2 2.2 7.7E-05 23.1 2.8 31 3-36 4-36 (70)
77 2kdb_A Homocysteine-responsive 77.0 4.1 0.00014 23.7 4.1 28 2-29 22-51 (99)
78 3n3k_B Ubiquitin; hydrolase, p 76.7 2.6 9E-05 23.0 3.1 67 4-82 4-75 (85)
79 2hj1_A Hypothetical protein; s 76.6 2 6.7E-05 25.2 2.6 22 16-37 28-49 (97)
80 2kdi_A Ubiquitin, vacuolar pro 76.1 9.6 0.00033 22.4 5.8 75 4-89 10-88 (114)
81 1f0z_A THis protein; ubiquitin 76.0 2.4 8.1E-05 22.6 2.7 27 5-36 2-28 (66)
82 2kl0_A Putative thiamin biosyn 75.5 2.5 8.7E-05 23.2 2.7 26 5-36 2-27 (73)
83 1ndd_A NEDD8, protein (ubiquit 75.2 4.6 0.00016 21.2 3.8 26 5-30 2-27 (76)
84 1wwt_A Threonyl-tRNA synthetas 74.7 6.5 0.00022 21.9 4.5 32 6-39 12-44 (88)
85 4eew_A Large proline-rich prot 74.6 5.2 0.00018 22.0 4.0 35 3-37 17-55 (88)
86 2kk8_A Uncharacterized protein 74.4 5.8 0.0002 22.0 4.2 27 4-30 11-37 (84)
87 3m62_B UV excision repair prot 74.3 2.8 9.5E-05 24.5 2.9 26 5-30 3-28 (106)
88 2dzi_A Ubiquitin-like protein 74.1 6.3 0.00022 21.1 4.2 28 3-30 7-34 (81)
89 1wgr_A Growth factor receptor- 73.6 8.6 0.00029 22.6 4.9 32 3-34 9-40 (100)
90 3v6c_B Ubiquitin; structural g 73.1 7.2 0.00025 21.7 4.4 36 3-38 17-56 (91)
91 2lxa_A Ubiquitin-like protein 73.1 1.9 6.6E-05 24.5 1.9 27 1-29 1-29 (87)
92 3a9j_A Ubiquitin; protein comp 72.9 5 0.00017 21.1 3.6 26 5-30 2-27 (76)
93 1wgh_A Ubiquitin-like 3, HCG-1 71.8 7.5 0.00026 23.3 4.4 27 3-29 16-42 (116)
94 2k02_A Ferrous iron transport 71.6 1.8 6.3E-05 24.9 1.5 24 26-49 36-64 (87)
95 1e0g_A Membrane-bound lytic mu 71.4 3.3 0.00011 20.1 2.4 22 17-38 4-25 (48)
96 2ojr_A Ubiquitin; lanthide-bin 70.7 8.9 0.0003 22.3 4.6 28 3-30 35-62 (111)
97 4a20_A Ubiquitin-like protein 69.6 7.2 0.00025 22.6 3.9 29 2-30 18-48 (98)
98 4hcn_B Polyubiquitin, ubiquiti 69.5 6.3 0.00021 22.4 3.6 34 4-37 23-60 (98)
99 3vdz_A Ubiquitin-40S ribosomal 69.0 9.8 0.00033 22.2 4.5 35 3-37 35-73 (111)
100 4fbj_B NEDD8; effector-HOST ta 68.6 6.9 0.00024 21.7 3.6 71 5-86 2-76 (88)
101 1v86_A DNA segment, CHR 7, way 67.7 6.7 0.00023 22.3 3.5 34 3-37 17-54 (95)
102 3k9o_B Ubiquitin, UBB+1; E2-25 67.5 7.4 0.00025 21.7 3.6 72 5-88 3-79 (96)
103 1v6e_A Cytoskeleton-associated 66.6 7.7 0.00026 21.9 3.6 30 1-30 5-35 (95)
104 1xn7_A Hypothetical protein YH 66.6 2.9 9.9E-05 23.4 1.6 25 26-50 36-65 (78)
105 2klc_A Ubiquilin-1; ubiquitin- 66.4 12 0.00042 21.4 4.5 34 2-36 24-61 (101)
106 1wyw_B Ubiquitin-like protein 65.3 9.9 0.00034 21.5 3.9 34 4-37 22-59 (97)
107 1uel_A HHR23B, UV excision rep 64.3 9.2 0.00031 21.5 3.6 25 5-29 2-26 (95)
108 1sif_A Ubiquitin; hydrophobic 63.5 9.7 0.00033 21.1 3.6 33 5-37 11-47 (88)
109 3rt3_B Ubiquitin-like protein 63.4 8.3 0.00028 23.7 3.5 74 5-90 4-85 (159)
110 1wf9_A NPL4 family protein; be 63.2 16 0.00055 21.1 4.6 34 3-37 7-45 (107)
111 1j8c_A Ubiquitin-like protein 62.8 15 0.00051 22.0 4.5 27 3-30 32-58 (125)
112 2dzj_A Synaptic glycoprotein S 62.7 9.4 0.00032 21.5 3.4 27 3-29 10-39 (88)
113 1ttn_A DC-UBP, dendritic cell- 62.5 12 0.00042 21.5 4.0 27 4-30 24-50 (106)
114 1wx8_A Riken cDNA 4931431F19; 61.4 16 0.00054 20.4 4.3 26 3-29 17-42 (96)
115 1wy8_A NP95-like ring finger p 60.9 16 0.00056 19.9 4.2 28 3-30 7-36 (89)
116 1t3u_A Conserved hypothetical 60.4 4.9 0.00017 23.4 1.9 30 1-31 1-33 (104)
117 1wgg_A Ubiquitin carboxyl-term 58.6 12 0.00039 21.4 3.3 35 3-38 7-46 (96)
118 1yx5_B Ubiquitin; proteasome, 58.0 23 0.00077 19.8 7.5 70 5-86 2-76 (98)
119 2faz_A Ubiquitin-like containi 57.7 17 0.00059 19.2 3.8 34 4-37 3-42 (78)
120 2djp_A Hypothetical protein SB 57.4 5.9 0.0002 21.4 1.8 23 16-38 16-38 (77)
121 2cu3_A Unknown function protei 57.1 6.5 0.00022 20.7 1.9 22 12-36 5-26 (64)
122 3b08_A Polyubiquitin-C, ubiqui 57.1 28 0.00097 20.7 8.1 73 5-89 2-79 (152)
123 3p42_A Predicted protein; beta 57.0 4.9 0.00017 27.1 1.7 34 1-35 1-34 (236)
124 1tke_A Threonyl-tRNA synthetas 55.9 9.3 0.00032 25.1 2.9 24 9-34 5-28 (224)
125 1v5o_A 1700011N24RIK protein; 54.0 28 0.00096 19.8 4.5 34 4-37 8-49 (102)
126 2daf_A FLJ35834 protein; hypot 53.5 21 0.00072 21.6 4.0 38 4-41 16-58 (118)
127 2io0_B Small ubiquitin-related 52.7 28 0.00097 19.7 4.3 35 3-37 5-43 (91)
128 1wju_A NEDD8 ultimate buster-1 51.5 21 0.00072 20.8 3.7 63 4-77 16-86 (100)
129 2kan_A Uncharacterized protein 51.0 31 0.0011 19.3 4.4 26 3-29 15-40 (94)
130 2dzm_A FAS-associated factor 1 50.1 14 0.00048 21.4 2.8 35 3-38 9-47 (100)
131 1v5t_A 8430435I17RIK protein; 48.3 17 0.00057 20.3 2.8 33 4-37 8-45 (90)
132 3rt3_B Ubiquitin-like protein 48.1 32 0.0011 20.9 4.4 34 4-37 82-119 (159)
133 2lg4_A Aurelin; antimicrobial 53.7 3.8 0.00013 20.1 0.0 17 32-49 24-40 (40)
134 3q3f_A Ribonuclease/ubiquitin 47.3 32 0.0011 22.3 4.4 71 4-85 106-180 (189)
135 2pjh_A Protein NPL4, nuclear p 46.3 7.2 0.00024 21.7 1.0 27 4-31 5-31 (80)
136 3j21_O 50S ribosomal protein L 45.9 9.7 0.00033 25.3 1.7 19 24-42 118-136 (203)
137 2dgb_A Hypothetical protein PU 45.6 28 0.00095 19.4 3.5 23 21-44 19-41 (84)
138 2kjr_A CG11242; UBL, ubiquitin 45.0 41 0.0014 19.0 4.3 29 2-30 14-44 (95)
139 3j21_T 50S ribosomal protein L 44.9 42 0.0014 19.0 4.5 26 10-35 59-85 (86)
140 1yqb_A Ubiquilin 3; structural 44.2 34 0.0012 19.4 3.8 27 3-30 22-48 (100)
141 1se9_A Ubiquitin family; ubiqu 43.9 39 0.0013 20.5 4.2 27 4-30 17-44 (126)
142 1we6_A Splicing factor, putati 43.8 31 0.001 19.9 3.6 27 3-29 27-57 (111)
143 4a1k_A Putative L, D-transpept 43.6 21 0.00072 22.4 3.0 21 16-36 3-23 (165)
144 1x1m_A Ubiquitin-like protein 43.5 16 0.00056 21.0 2.3 28 2-29 11-50 (107)
145 3l0w_B Monoubiquitinated proli 43.4 27 0.00094 21.9 3.6 33 5-37 2-38 (169)
146 2pg3_A Queuosine biosynthesis 42.3 11 0.00039 24.5 1.6 25 25-49 168-201 (232)
147 1wx7_A Ubiquilin 3; ubiquitin- 41.9 36 0.0012 19.3 3.7 27 3-30 17-43 (106)
148 2io1_B Small ubiquitin-related 41.7 47 0.0016 18.8 4.4 35 3-37 7-45 (94)
149 1wxv_A BAG-family molecular ch 40.5 45 0.0016 18.2 3.9 26 3-29 7-37 (92)
150 3b1l_X E3 ubiquitin-protein li 46.6 5.9 0.0002 21.0 0.0 24 6-29 3-26 (76)
151 1vq8_N 50S ribosomal protein L 38.2 16 0.00055 23.9 1.8 18 24-41 117-134 (187)
152 2bb6_A TCII, TC II, transcobal 37.7 42 0.0014 24.6 4.2 19 15-33 331-349 (414)
153 1nyr_A Threonyl-tRNA synthetas 36.7 6.2 0.00021 30.2 -0.4 30 1-34 1-30 (645)
154 2qjl_A URM1, ubiquitin-related 36.6 58 0.002 18.3 5.2 31 1-31 1-39 (99)
155 2l7r_A Ubiquitin-like protein 36.6 47 0.0016 18.4 3.5 25 4-30 20-44 (93)
156 1wm3_A Ubiquitin-like protein 36.3 49 0.0017 17.4 4.5 34 4-37 2-39 (72)
157 2l9y_A CVNH-LYSM lectin; carbo 36.3 32 0.0011 21.7 3.0 22 16-37 63-84 (167)
158 2pmv_A Gastric intrinsic facto 34.3 34 0.0012 24.9 3.2 19 15-33 314-332 (399)
159 1t0y_A Tubulin folding cofacto 34.2 44 0.0015 19.7 3.3 36 1-36 3-44 (122)
160 2y5p_A Internalin B, INLB; pro 34.1 28 0.00097 18.8 2.2 23 3-26 4-26 (74)
161 3m63_B Ubiquitin domain-contai 33.6 11 0.00039 21.6 0.5 33 4-37 29-65 (101)
162 2gu1_A Zinc peptidase; alpha/b 33.1 31 0.001 24.4 2.8 23 16-38 8-30 (361)
163 3u5e_m 60S ribosomal protein L 32.5 9.4 0.00032 22.9 0.0 24 6-29 3-26 (128)
164 1oqy_A HHR23A, UV excision rep 32.5 25 0.00085 25.2 2.2 26 4-29 8-33 (368)
165 3bl5_A Queuosine biosynthesis 31.6 22 0.00075 22.5 1.7 27 24-50 164-199 (219)
166 1vq3_A Phosphoribosylformylgly 31.4 12 0.00042 21.7 0.4 32 1-36 15-46 (94)
167 2kd0_A LRR repeats and ubiquit 31.3 64 0.0022 17.5 3.5 21 10-30 18-38 (85)
168 1we7_A SF3A1 protein; structur 31.0 71 0.0024 18.4 3.8 17 13-29 45-61 (115)
169 3aqy_A Beta-1,3-glucan-binding 30.1 43 0.0015 19.7 2.6 27 2-29 6-32 (106)
170 3hwu_A Putative DNA-binding pr 30.0 58 0.002 19.9 3.4 41 13-53 12-56 (147)
171 2h6l_A Hypothetical protein; N 29.1 68 0.0023 19.5 3.6 40 13-52 9-52 (146)
172 2zkr_n 60S ribosomal protein L 29.0 27 0.00091 24.5 1.8 17 25-41 161-177 (297)
173 3ai5_A Yeast enhanced green fl 28.5 89 0.003 21.8 4.5 35 3-37 233-271 (307)
174 3ivf_A Talin-1; FERM domain, c 27.5 87 0.003 21.8 4.3 32 1-33 1-32 (371)
175 2yx5_A UPF0062 protein MJ1593; 27.0 24 0.00082 19.6 1.1 40 1-44 1-40 (83)
176 3rpf_C Molybdopterin convertin 26.7 61 0.0021 17.1 2.8 31 3-35 2-32 (74)
177 4gmv_A RAS-associated and plec 26.3 1E+02 0.0036 21.1 4.5 28 3-30 31-58 (281)
178 2kzr_A Ubiquitin thioesterase 25.5 41 0.0014 18.3 1.9 30 6-36 3-37 (86)
179 2d07_B Ubiquitin-like protein 25.4 95 0.0033 17.3 4.5 35 3-37 17-55 (93)
180 4eby_A Chitin elicitor recepto 25.3 45 0.0015 21.8 2.4 23 16-38 144-166 (212)
181 3shq_A UBLCP1; phosphatase, hy 24.9 65 0.0022 22.5 3.3 35 3-38 5-43 (320)
182 2k8h_A Small ubiquitin protein 24.5 1.1E+02 0.0038 17.8 4.3 35 4-38 27-65 (110)
183 2xzm_9 RPS31E; ribosome, trans 24.5 16 0.00054 23.9 0.0 24 6-29 3-26 (189)
184 3ghd_A A cystathionine beta-sy 24.4 47 0.0016 17.4 2.0 20 17-36 2-24 (70)
185 1wz0_A Ubiquitin-like protein 24.1 1.1E+02 0.0038 17.6 4.9 35 3-37 24-62 (104)
186 3u5c_f 40S ribosomal protein S 23.9 16 0.00056 22.8 0.0 25 6-30 3-27 (152)
187 1t4a_A PURS; tetramer, complex 23.3 27 0.00094 19.4 0.9 32 1-36 1-32 (84)
188 3slu_A M23 peptidase domain pr 23.3 65 0.0022 23.1 3.0 22 16-37 15-36 (371)
189 1vjk_A Molybdopterin convertin 23.1 1.1E+02 0.0037 17.1 4.1 34 2-35 10-48 (98)
190 2hx0_A Putative DNA-binding pr 22.2 50 0.0017 20.5 2.0 19 14-32 19-37 (154)
191 3hk0_A Growth factor receptor- 21.9 1.5E+02 0.0051 20.0 4.5 30 3-32 8-37 (256)
192 3j20_G 30S ribosomal protein S 21.7 1.1E+02 0.0038 18.6 3.5 23 1-23 1-24 (125)
193 4ajy_B Transcription elongatio 21.5 83 0.0028 18.9 2.8 35 1-37 1-39 (118)
194 1rws_A Hypothetical protein PF 21.3 44 0.0015 18.0 1.5 24 11-36 20-43 (77)
195 2jvf_A De novo protein M7; tet 21.2 1.2E+02 0.004 16.8 4.1 28 3-31 7-36 (96)
196 3tca_A Amyloid beta A4 precurs 20.9 1.8E+02 0.006 19.0 4.7 28 4-31 35-62 (291)
197 3htn_A Putative DNA binding pr 20.6 98 0.0034 18.9 3.1 43 12-54 14-60 (149)
198 1qf6_A THRRS, threonyl-tRNA sy 20.3 69 0.0024 24.5 2.8 26 5-34 3-28 (642)
199 1wj4_A KIAA0794 protein; UBX d 20.2 1.5E+02 0.005 17.6 4.2 26 4-29 44-69 (124)
No 1
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.97 E-value=3.4e-30 Score=156.50 Aligned_cols=96 Identities=70% Similarity=1.174 Sum_probs=88.4
Q ss_pred eEEEEEEcCCCC-EEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeee
Q 034300 3 VYKIKLIGPNGE-EHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCIS 81 (98)
Q Consensus 3 ~~~v~i~~~~g~-~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~ 81 (98)
.++|+|..+++. .++|++++|+|||++|+++|+++|++|+.|.||+|+++|++|.+.+.+...|++.+.++|+||+||+
T Consensus 2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~ 81 (98)
T 1czp_A 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVA 81 (98)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred ceEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCCCccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeeeC
Confidence 578998655553 4689999999999999999999999999999999999999999998888899988899999999999
Q ss_pred EECCCeEEEecCccccC
Q 034300 82 YPTSDCVIQSHKEEELC 98 (98)
Q Consensus 82 ~~~~d~~i~~~~~~~~~ 98 (98)
++.+|++|++++++++|
T Consensus 82 ~~~~d~~v~~~~~~~~~ 98 (98)
T 1czp_A 82 YPTSDVVIQTHKEEDLY 98 (98)
T ss_dssp EESSCEEEECCCTTTTC
T ss_pred EECCCEEEEeccccccC
Confidence 99999999999999987
No 2
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.97 E-value=3.7e-30 Score=155.24 Aligned_cols=95 Identities=65% Similarity=1.077 Sum_probs=88.0
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeE
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISY 82 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~ 82 (98)
+++|+|..++| .++|++++|+|||++|+++|+++|++|+.|.||+|+++|.+|.+.+.+...|++++.++++||+||++
T Consensus 1 ~~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~ 79 (95)
T 1frr_A 1 AYKTVLKTPSG-EFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAI 79 (95)
T ss_dssp CEEEEEEETTE-EEEEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCE
T ss_pred CeEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCCCCCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECE
Confidence 36788854787 46899999999999999999999999999999999999999999998888999988999999999999
Q ss_pred ECCCeEEEecCccccC
Q 034300 83 PTSDCVIQSHKEEELC 98 (98)
Q Consensus 83 ~~~d~~i~~~~~~~~~ 98 (98)
+.+|++|++++++++|
T Consensus 80 ~~~~~~v~~~~~~~~~ 95 (95)
T 1frr_A 80 PESDLVIETHKEEELF 95 (95)
T ss_dssp ESSCEEEECCCTTTTC
T ss_pred ECCCEEEEEcchhhcC
Confidence 9999999999999887
No 3
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.97 E-value=3.3e-30 Score=156.34 Aligned_cols=95 Identities=60% Similarity=1.134 Sum_probs=87.7
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeE
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISY 82 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~ 82 (98)
.++|+|..++| .++|++++|+|||++|+++|+++|++|+.|.||+|+++|++|.+.+.+...|++.+.++|+||+||++
T Consensus 2 ~~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~ 80 (97)
T 1a70_A 2 AYKVTLVTPTG-NVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAY 80 (97)
T ss_dssp EEEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCE
T ss_pred eEEEEEEeCCc-eEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeECE
Confidence 57888855666 46899999999999999999999999999999999999999999988888999888899999999999
Q ss_pred ECCCeEEEecCccccC
Q 034300 83 PTSDCVIQSHKEEELC 98 (98)
Q Consensus 83 ~~~d~~i~~~~~~~~~ 98 (98)
+.+|++|++++++++|
T Consensus 81 ~~~d~~v~~~~~~~~~ 96 (97)
T 1a70_A 81 PVSDVTIETHKKEELT 96 (97)
T ss_dssp ESSCEEEECCCGGGCC
T ss_pred ECCCEEEEeCchhhcc
Confidence 9999999999999887
No 4
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.97 E-value=3.9e-30 Score=155.18 Aligned_cols=94 Identities=66% Similarity=1.119 Sum_probs=87.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeEE
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYP 83 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~~ 83 (98)
|+|+|..++| .++|++++|+|||++|+++|+++|++|+.|.||+|+++|++|.+.+.+...|++++.++|+||+||+++
T Consensus 1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~ 79 (94)
T 1awd_A 1 YKVTLKTPSG-EETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYP 79 (94)
T ss_dssp CEEEEEETTE-EEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEE
T ss_pred CEEEEEeCCC-cEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECEE
Confidence 4678855676 468999999999999999999999999999999999999999999988889998889999999999999
Q ss_pred CCCeEEEecCccccC
Q 034300 84 TSDCVIQSHKEEELC 98 (98)
Q Consensus 84 ~~d~~i~~~~~~~~~ 98 (98)
.+|++|++++++++|
T Consensus 80 ~~d~~i~~~~~~~~~ 94 (94)
T 1awd_A 80 TSDVTILTHQEAALY 94 (94)
T ss_dssp SSCEEEECCCGGGGC
T ss_pred CCCEEEEecchhccC
Confidence 999999999999987
No 5
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.97 E-value=5.1e-30 Score=155.79 Aligned_cols=95 Identities=56% Similarity=1.048 Sum_probs=86.6
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeE
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISY 82 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~ 82 (98)
.++|+|..++| .++|++++|+|||++|+++|+++|++|+.|.||+|+++|++|.+.+.+...|++.+.++|+||+||++
T Consensus 2 ~~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~ 80 (98)
T 1iue_A 2 FYNITLRTNDG-EKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCY 80 (98)
T ss_dssp EEEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCE
T ss_pred cEEEEEEeCCC-eEEEEeCCCCcHHHHHHHcCCCCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeECE
Confidence 57888854554 46899999999999999999999999999999999999999999988888999988999999999999
Q ss_pred ECCCeEEEecCccccC
Q 034300 83 PTSDCVIQSHKEEELC 98 (98)
Q Consensus 83 ~~~d~~i~~~~~~~~~ 98 (98)
+.+|++|++++++++|
T Consensus 81 ~~~d~~i~~~~~~~~~ 96 (98)
T 1iue_A 81 PKSDCVIETHKEDELH 96 (98)
T ss_dssp ESSCEEEECCCHHHHH
T ss_pred ECCCeEEEeCChHhhc
Confidence 9999999999887765
No 6
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.96 E-value=5e-29 Score=151.18 Aligned_cols=96 Identities=49% Similarity=0.963 Sum_probs=86.5
Q ss_pred ceEEEEEEcCCC-CEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeee
Q 034300 2 AVYKIKLIGPNG-EEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCI 80 (98)
Q Consensus 2 ~~~~v~i~~~~g-~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq 80 (98)
|.++|+|..+++ ..++|++++|+|||++|+++|+++|++|+.|.||+|+++|++|.+.+.+...|++.+.++|+||+||
T Consensus 1 ~~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~ 80 (98)
T 1frd_A 1 ASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCV 80 (98)
T ss_dssp CEEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGG
T ss_pred CceEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeE
Confidence 357888854453 1468999999999999999999999999999999999999999999888889999889999999999
Q ss_pred eEECCCeEEEecCcccc
Q 034300 81 SYPTSDCVIQSHKEEEL 97 (98)
Q Consensus 81 ~~~~~d~~i~~~~~~~~ 97 (98)
+++.+|++|++++++++
T Consensus 81 ~~~~~d~~v~~~~~~~~ 97 (98)
T 1frd_A 81 TYPRSNCTIKTHQEPYL 97 (98)
T ss_dssp CEESSSEEEECCCGGGC
T ss_pred CEECCCEEEEecchhhc
Confidence 99999999999988765
No 7
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.96 E-value=7.7e-29 Score=149.27 Aligned_cols=93 Identities=57% Similarity=1.051 Sum_probs=84.8
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeE
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISY 82 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~ 82 (98)
+++|+|..++| .++|++++|+|||++|+++| ++|++|+.|.||+|+++|++|.+.+.+...|++.+.++|+||+||++
T Consensus 1 ~~~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~~ 78 (93)
T 1wri_A 1 AYKVTLKTPDG-DITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAI 78 (93)
T ss_dssp CEEEEEEETTE-EEEEEECTTSCHHHHHHHHS-CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCE
T ss_pred CEEEEEEECCC-eEEEEECCCCcHHHHHHHCc-CCCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeCE
Confidence 46788855665 46899999999999999999 99999999999999999999999988888999888999999999999
Q ss_pred ECCCeEEEecCcccc
Q 034300 83 PTSDCVIQSHKEEEL 97 (98)
Q Consensus 83 ~~~d~~i~~~~~~~~ 97 (98)
|.+|++|++++++++
T Consensus 79 ~~~d~~v~~~~~~~~ 93 (93)
T 1wri_A 79 PESDVVIETHKEDEL 93 (93)
T ss_dssp ESSCEEEECCCGGGC
T ss_pred ECCCEEEEecccccC
Confidence 999999999988764
No 8
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.95 E-value=7.9e-29 Score=150.36 Aligned_cols=94 Identities=31% Similarity=0.509 Sum_probs=83.8
Q ss_pred Cc-eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeec--CCCCCCChhhhhCCeEE
Q 034300 1 MA-VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ--SDGSFLDDNQMEAGYLL 77 (98)
Q Consensus 1 M~-~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~--~~~~~l~~~~~~~~~~L 77 (98)
|+ +++|+|..+++..++|++++|+|||++|+++|+++|++|+.|.||+|+++|++|.+.+ .+...|++.+.++|+||
T Consensus 1 M~~~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~e~~~L~~~~~~~g~~L 80 (98)
T 1jq4_A 1 MQRVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVL 80 (98)
T ss_dssp CCCEEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBC
T ss_pred CCCcEEEEEEecCCCcEEEEeCCCChHHHHHHHcCCCCcCCCCCCCCCCCEEEEEcCccccCcccccccCHHHhcCCcEE
Confidence 55 6889986555666799999999999999999999999999999999999999999876 46678898888899999
Q ss_pred eeeeEECCCeEEEecCc
Q 034300 78 TCISYPTSDCVIQSHKE 94 (98)
Q Consensus 78 aCq~~~~~d~~i~~~~~ 94 (98)
+||+++.+|++|+++.+
T Consensus 81 aCq~~~~~d~~v~~~~~ 97 (98)
T 1jq4_A 81 LCRTYPKTDLEIELPYT 97 (98)
T ss_dssp TTTCCSSCCSEEECSCC
T ss_pred EeeCEECCCEEEEecCC
Confidence 99999999999999764
No 9
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.94 E-value=3e-28 Score=154.23 Aligned_cols=95 Identities=19% Similarity=0.376 Sum_probs=82.3
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC-ccCCCc-cccccccEEEEeeeeeec------CCCCCCC-hhhhh
Q 034300 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD-LPYSCR-AGACSTCAGKLVSGSVDQ------SDGSFLD-DNQME 72 (98)
Q Consensus 2 ~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~-i~~~C~-~G~Cg~C~v~v~~G~~~~------~~~~~l~-~~~~~ 72 (98)
.|++|+|+.++|..++|++++|+|||++|+++|++ +++.|+ .|.||+|+|+|.+|.+.. .|...|+ ..+++
T Consensus 20 ~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~~e~~ 99 (126)
T 3hui_A 20 HMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDVR 99 (126)
T ss_dssp SEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTSSSCC
T ss_pred CceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCchhhcc
Confidence 47899997789977899999999999999999999 999998 899999999999997431 1334566 36678
Q ss_pred CCeEEeeeeEECCC---eEEEecCccc
Q 034300 73 AGYLLTCISYPTSD---CVIQSHKEEE 96 (98)
Q Consensus 73 ~~~~LaCq~~~~~d---~~i~~~~~~~ 96 (98)
+++|||||+++.+| ++|++|+.+|
T Consensus 100 ~g~RLaCQ~~~~~dldgl~V~lp~~~r 126 (126)
T 3hui_A 100 PNSRLSCQIKVSNELDGLIVTTPERQR 126 (126)
T ss_dssp TTEEEGGGCBCCGGGTTEEEECCSCCC
T ss_pred CCeEEeeeCEECcCCCcEEEEecCcCC
Confidence 89999999999998 9999998765
No 10
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.94 E-value=2.4e-28 Score=150.88 Aligned_cols=94 Identities=22% Similarity=0.343 Sum_probs=79.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc-cccccccEEEEeeeeeecC------CCCCCCh-hhhhCC
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR-AGACSTCAGKLVSGSVDQS------DGSFLDD-NQMEAG 74 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~------~~~~l~~-~~~~~~ 74 (98)
|++|+|+.++|+.++|++++|+|||++|+++|+++|+.|+ .|.||+|+++|.+|.+... |...|+. .+.++|
T Consensus 5 m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g 84 (109)
T 2y5c_A 5 VVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQEN 84 (109)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTCCTT
T ss_pred cEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccCCCC
Confidence 7889997789987789999999999999999999999999 5999999999999964321 2234542 467889
Q ss_pred eEEeeeeEECCC---eEEEecCccc
Q 034300 75 YLLTCISYPTSD---CVIQSHKEEE 96 (98)
Q Consensus 75 ~~LaCq~~~~~d---~~i~~~~~~~ 96 (98)
+|||||+++.+| ++|++|+..+
T Consensus 85 ~rLaCq~~~~~d~~~~~v~ip~~~~ 109 (109)
T 2y5c_A 85 SRLGCQIVLTPELEGAEFTLPKITR 109 (109)
T ss_dssp EEEGGGCBCCGGGTTCEEECCSCCC
T ss_pred cEeeEEeEEecCCCeEEEEecCCCC
Confidence 999999999986 9999987653
No 11
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.94 E-value=3.2e-28 Score=149.45 Aligned_cols=91 Identities=21% Similarity=0.380 Sum_probs=80.0
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC-ccCCCc-cccccccEEEEeeeeeecC------CCCCCCh-hhhhCCe
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD-LPYSCR-AGACSTCAGKLVSGSVDQS------DGSFLDD-NQMEAGY 75 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~-i~~~C~-~G~Cg~C~v~v~~G~~~~~------~~~~l~~-~~~~~~~ 75 (98)
+|+|+.++|..++|++++|+|||++|+++|++ ++++|+ .|.||+|+++|.+|.+... |...|+. .++++++
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~g~ 81 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPHS 81 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTTE
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCCCc
Confidence 68888999998899999999999999999999 999999 9999999999999976432 2345665 6678899
Q ss_pred EEeeeeEECCC---eEEEecCcc
Q 034300 76 LLTCISYPTSD---CVIQSHKEE 95 (98)
Q Consensus 76 ~LaCq~~~~~d---~~i~~~~~~ 95 (98)
|||||+++.+| ++|++|+++
T Consensus 82 rLaCq~~~~~dl~gl~v~ip~~~ 104 (104)
T 3lxf_A 82 RLSCQITINDKLEGLEVEIAPED 104 (104)
T ss_dssp EEGGGCBCCGGGTTCEEEECCCC
T ss_pred EEEeeCEEccCCCCEEEEecCCC
Confidence 99999999998 999999864
No 12
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.93 E-value=2.5e-27 Score=145.99 Aligned_cols=90 Identities=19% Similarity=0.311 Sum_probs=76.4
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCcc--CCCc-cccccccEEEEeeeeeec------CCCCCCCh-hhhh
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLP--YSCR-AGACSTCAGKLVSGSVDQ------SDGSFLDD-NQME 72 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~--~~C~-~G~Cg~C~v~v~~G~~~~------~~~~~l~~-~~~~ 72 (98)
|++|+|+.++|+.++|++++|+|||++|+++||+++ +.|+ .|.||+|+|+|.+|.+.. .|...|+. .+.+
T Consensus 6 m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~ 85 (108)
T 2bt6_A 6 KITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT 85 (108)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhCcccCC
Confidence 678999768898889999999999999999999999 9998 699999999999995432 13345654 5678
Q ss_pred CCeEEeeeeEECC---CeEEEec
Q 034300 73 AGYLLTCISYPTS---DCVIQSH 92 (98)
Q Consensus 73 ~~~~LaCq~~~~~---d~~i~~~ 92 (98)
+++|||||+++.+ +++|++|
T Consensus 86 ~g~rLaCq~~~~~d~d~~~V~~p 108 (108)
T 2bt6_A 86 DRSRLGCQICLTKAMDNMTVRVP 108 (108)
T ss_dssp TTEEEGGGCBCCGGGTTEEEECC
T ss_pred CCcEeeEEEEecCCCCCEEEEcC
Confidence 8999999999998 5999876
No 13
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.93 E-value=1.5e-26 Score=143.47 Aligned_cols=93 Identities=22% Similarity=0.336 Sum_probs=75.9
Q ss_pred EEEEEEcCCC---CEEEEEeCCCchHHHHHHHcCCCccCCCc-cccccccEEEEeeeeeecC-----CCCCCChh-hhhC
Q 034300 4 YKIKLIGPNG---EEHEFEAQEDQYILDAAEEAGVDLPYSCR-AGACSTCAGKLVSGSVDQS-----DGSFLDDN-QMEA 73 (98)
Q Consensus 4 ~~v~i~~~~g---~~~~i~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~-----~~~~l~~~-~~~~ 73 (98)
++|+|+.++| ..++|++++|+|||++|+++|+++|+.|+ .|.||+|+++|++|..... +...|+.. +.++
T Consensus 2 ~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~e~~~L~~~~~~~~ 81 (113)
T 3ah7_A 2 PLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLEA 81 (113)
T ss_dssp CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESGGGSCCCCHHHHHHHTTSTTCCT
T ss_pred CEEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCcccCCCCCHHHHHhhhcccccCC
Confidence 4678766555 44689999999999999999999999999 7999999999999974432 12345543 6778
Q ss_pred CeEEeeeeEEC-CCeEEEecCccc
Q 034300 74 GYLLTCISYPT-SDCVIQSHKEEE 96 (98)
Q Consensus 74 ~~~LaCq~~~~-~d~~i~~~~~~~ 96 (98)
++|||||+++. +|++|++|.+..
T Consensus 82 g~rLaCq~~~~~~dl~v~~~~~~~ 105 (113)
T 3ah7_A 82 QSRLGCQVFVADEDLTIEIPKYSL 105 (113)
T ss_dssp TEEEGGGCBCCSSCEEEECCSCCC
T ss_pred CcEEeeeCEEeCCCEEEEECchhh
Confidence 99999999998 899999987543
No 14
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.93 E-value=4.2e-27 Score=144.52 Aligned_cols=91 Identities=18% Similarity=0.347 Sum_probs=76.1
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC-ccCCCc-cccccccEEEEeeeeee------cCCCCCCChhh-h-hCC
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD-LPYSCR-AGACSTCAGKLVSGSVD------QSDGSFLDDNQ-M-EAG 74 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~-i~~~C~-~G~Cg~C~v~v~~G~~~------~~~~~~l~~~~-~-~~~ 74 (98)
+|+|+.++|..++|++++|+|||++|+++|++ ++++|+ .|.||+|+++|.+|... ..+...|+..+ . +++
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g 81 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPN 81 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence 67887788977799999999999999999999 999996 89999999999999432 22334566544 6 789
Q ss_pred eEEeeeeEECC---CeEEEecCcc
Q 034300 75 YLLTCISYPTS---DCVIQSHKEE 95 (98)
Q Consensus 75 ~~LaCq~~~~~---d~~i~~~~~~ 95 (98)
+||+||+++.+ +++|++|+.+
T Consensus 82 ~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1xlq_A 82 SRLCCQIIMTPELDGIVVDVPDRQ 105 (106)
T ss_dssp EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred cEeeeeeEeecCCCCEEEEecCcc
Confidence 99999999998 6899998653
No 15
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.93 E-value=5.1e-27 Score=144.12 Aligned_cols=91 Identities=33% Similarity=0.482 Sum_probs=76.6
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC-ccCCCc-cccccccEEEEeeeeeec------CCCCCCChh-hhh-CC
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD-LPYSCR-AGACSTCAGKLVSGSVDQ------SDGSFLDDN-QME-AG 74 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~-i~~~C~-~G~Cg~C~v~v~~G~~~~------~~~~~l~~~-~~~-~~ 74 (98)
+|+|+.++|..++|++++|+|||++|+++|++ ++++|+ .|.||+|+++|.+|.+.. .+...|+.. +.+ ++
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g 81 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPAT 81 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTTT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccCCCC
Confidence 67887788976799999999999999999999 999996 899999999999995432 233456654 567 89
Q ss_pred eEEeeeeEECC---CeEEEecCcc
Q 034300 75 YLLTCISYPTS---DCVIQSHKEE 95 (98)
Q Consensus 75 ~~LaCq~~~~~---d~~i~~~~~~ 95 (98)
+||+||+++.+ +++|++|..+
T Consensus 82 ~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1uwm_A 82 SRLTCQIKVTSLLDGLVVHLPEKQ 105 (106)
T ss_dssp EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred cEecccCEEccCCCCEEEEecCCC
Confidence 99999999998 6999998754
No 16
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.93 E-value=2.1e-25 Score=158.97 Aligned_cols=94 Identities=29% Similarity=0.467 Sum_probs=85.1
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeec----CCCCCCChhhhhCCeE
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQ----SDGSFLDDNQMEAGYL 76 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~----~~~~~l~~~~~~~~~~ 76 (98)
|+|++|+|...+|..++|++++|+|||++|+++|++++++|+.|.||+|+++|++|.+.. .+...|++++.++|+|
T Consensus 1 m~~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~~ 80 (338)
T 1krh_A 1 MSNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYV 80 (338)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEE
T ss_pred CCceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCEEEEecCcEecccCccccccCCHHHHhCCeE
Confidence 889999996666767799999999999999999999999999999999999999999876 3667899888999999
Q ss_pred EeeeeEECCCeEEEecCc
Q 034300 77 LTCISYPTSDCVIQSHKE 94 (98)
Q Consensus 77 LaCq~~~~~d~~i~~~~~ 94 (98)
|+||+++.+|++|+++..
T Consensus 81 LaCq~~~~~~~~v~~~~~ 98 (338)
T 1krh_A 81 LACQCRPTSDAVFQIQAS 98 (338)
T ss_dssp ETTTCEESSSEEEEESSC
T ss_pred EEEeCEECCCeEEEEecc
Confidence 999999999999999764
No 17
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.92 E-value=1.9e-27 Score=145.85 Aligned_cols=90 Identities=20% Similarity=0.430 Sum_probs=76.4
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC-ccCCCc-cccccccEEEEeeee------eecCCCCCCC--hhhhhCC
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD-LPYSCR-AGACSTCAGKLVSGS------VDQSDGSFLD--DNQMEAG 74 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~-i~~~C~-~G~Cg~C~v~v~~G~------~~~~~~~~l~--~~~~~~~ 74 (98)
+|+|+.++|..++|++++|+|||++|+++|++ +|++|+ .|.||+|+++|.+|. +...+...|+ ..+.+++
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~~~g 81 (105)
T 1b9r_A 2 RVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTAG 81 (105)
T ss_dssp EEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCTT
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence 67886688876799999999999999999999 999999 799999999999994 3333444565 4667899
Q ss_pred eEEeeeeEECC---CeEEEecCc
Q 034300 75 YLLTCISYPTS---DCVIQSHKE 94 (98)
Q Consensus 75 ~~LaCq~~~~~---d~~i~~~~~ 94 (98)
+||+||+++.+ |++|++|+.
T Consensus 82 ~rLaCq~~~~~~~~~l~v~~p~~ 104 (105)
T 1b9r_A 82 TRLSCQVFIDPSMDGLIVRVPLP 104 (105)
T ss_dssp BSCGGGCCCCTTSTTEEEECCSC
T ss_pred cEeeeeCEecCCCCcEEEEecCC
Confidence 99999999998 799999864
No 18
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.92 E-value=6.5e-26 Score=138.54 Aligned_cols=90 Identities=28% Similarity=0.369 Sum_probs=76.6
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc-cccccccEEEEeeeeeecCC------CCCCCh-hhhhCC
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR-AGACSTCAGKLVSGSVDQSD------GSFLDD-NQMEAG 74 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~~------~~~l~~-~~~~~~ 74 (98)
+++|+|..++|+.++|++++|+|||++|+++|++++++|+ .|.||+|+++|.+|.+.+.. ...|+. .+.+++
T Consensus 3 ~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~~g 82 (103)
T 2wlb_A 3 GIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEET 82 (103)
T ss_dssp CEEEEEECTTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCTT
T ss_pred ceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCCCC
Confidence 5789985488977799999999999999999999999999 89999999999999766432 224554 357789
Q ss_pred eEEeeeeEECCC---eEEEec
Q 034300 75 YLLTCISYPTSD---CVIQSH 92 (98)
Q Consensus 75 ~~LaCq~~~~~d---~~i~~~ 92 (98)
+||+||+++.+| ++|++|
T Consensus 83 ~rLaCq~~~~~d~~~l~v~lp 103 (103)
T 2wlb_A 83 SRLGCQVLLRKDLDGIRVRIP 103 (103)
T ss_dssp EEEGGGCBCCGGGTTEEEECC
T ss_pred cEeeEeeEeCCCCCcEEEEcC
Confidence 999999999999 999876
No 19
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.92 E-value=3.9e-25 Score=168.97 Aligned_cols=94 Identities=30% Similarity=0.617 Sum_probs=86.4
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc-cccccccEEEEeeeeeecCCCCCCChhhhhCCeEEee
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR-AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTC 79 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaC 79 (98)
|.|++|+| .++|+ ++++++|+|||++++++|++++++|+ .|.||+|+++|++|.+.+.+...|++++.++|+||+|
T Consensus 1 M~m~~V~~-~~sg~--~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLaC 77 (631)
T 3zyy_X 1 MAEYKVLF-KPDQK--EVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLAC 77 (631)
T ss_dssp --CEEEEE-ETTTE--EEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEETT
T ss_pred CCceEEEE-ecCCe--EEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEee
Confidence 88999999 67774 89999999999999999999999999 9999999999999999998888999999999999999
Q ss_pred eeEECCCeEEEecCcccc
Q 034300 80 ISYPTSDCVIQSHKEEEL 97 (98)
Q Consensus 80 q~~~~~d~~i~~~~~~~~ 97 (98)
|+++.+|++|++|+.+++
T Consensus 78 qa~~~sDl~Ielp~~~~~ 95 (631)
T 3zyy_X 78 QTYPESDLIIEIPFDSRL 95 (631)
T ss_dssp TEEECSSEEEECCTTSSC
T ss_pred eCEECCCEEEEecchhhh
Confidence 999999999999987664
No 20
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.92 E-value=1.7e-25 Score=141.86 Aligned_cols=89 Identities=36% Similarity=0.665 Sum_probs=77.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhh-hhCCeEEeeeeE
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQ-MEAGYLLTCISY 82 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~-~~~~~~LaCq~~ 82 (98)
.+|+| .++|+ .++++++|+|||++|+++|+++|++|+.|.||+|+++|++|.+.+.+...|++.+ .++|+||+||++
T Consensus 28 ~~i~i-~~~g~-~~v~v~~g~tlL~aa~~~Gi~i~~~C~~G~CgtC~v~v~~G~v~~~e~~~L~~~e~~~~g~rLaCq~~ 105 (128)
T 1doi_A 28 SDMDL-DDEDY-GSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCIGS 105 (128)
T ss_dssp HHSCC-CTTTE-EEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEEECCCSSSCHHHHHTSCEEEGGGEE
T ss_pred cEEEE-EeCCc-EEEEECCCCcHHHHHHHcCCCCccCCCccCCCCCEeEEecCCcCchhhccCCHhHhccCCEEEEEEeE
Confidence 34556 66773 3899999999999999999999999999999999999999999988888899855 789999999999
Q ss_pred ECCC-eEEEecCc
Q 034300 83 PTSD-CVIQSHKE 94 (98)
Q Consensus 83 ~~~d-~~i~~~~~ 94 (98)
|.+| ++|+....
T Consensus 106 ~~~d~i~i~~~~~ 118 (128)
T 1doi_A 106 PDADEVKIVYNAK 118 (128)
T ss_dssp ECSSEEEEEECGG
T ss_pred EcCCeEEEEecCC
Confidence 9999 88876543
No 21
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.92 E-value=3.1e-25 Score=137.28 Aligned_cols=93 Identities=26% Similarity=0.398 Sum_probs=74.3
Q ss_pred EEEEEEcCCC---CEEEEEeCCCchHHHHHHHcCCCccCCCc-cccccccEEEEeeeeeecCCC-----CCCCh-hhhhC
Q 034300 4 YKIKLIGPNG---EEHEFEAQEDQYILDAAEEAGVDLPYSCR-AGACSTCAGKLVSGSVDQSDG-----SFLDD-NQMEA 73 (98)
Q Consensus 4 ~~v~i~~~~g---~~~~i~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~~~-----~~l~~-~~~~~ 73 (98)
++|+|+.++| ..++|++++|+|||++|+++|+++|++|+ .|.||+|+++|.+|.+.+... ..|+. .+.++
T Consensus 2 ~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~~e~~~L~~~~~~~~ 81 (111)
T 1i7h_A 2 PKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEP 81 (111)
T ss_dssp CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCCT
T ss_pred CEEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCcccCCCCCHHHHHHhhhccccCC
Confidence 4677755443 34689999999999999999999999995 999999999999998765432 12332 13567
Q ss_pred CeEEeeeeEEC-CCeEEEecCccc
Q 034300 74 GYLLTCISYPT-SDCVIQSHKEEE 96 (98)
Q Consensus 74 ~~~LaCq~~~~-~d~~i~~~~~~~ 96 (98)
++||+||+++. +|++|++++.+.
T Consensus 82 g~rLaCq~~~~~~dl~v~~~~~~~ 105 (111)
T 1i7h_A 82 ESRLSCQARVTDEDLVVEIPRYTI 105 (111)
T ss_dssp TEEETTTCBCCSSCEEEECCSCCC
T ss_pred CcEEEEEEEEeCCCEEEEEChHHh
Confidence 89999999996 899999987554
No 22
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.90 E-value=4.1e-26 Score=143.86 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=19.5
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCcc--CCCc-cccccccEEEEeeeee-ecC-----CCCCCCh-hhh
Q 034300 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLP--YSCR-AGACSTCAGKLVSGSV-DQS-----DGSFLDD-NQM 71 (98)
Q Consensus 2 ~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~--~~C~-~G~Cg~C~v~v~~G~~-~~~-----~~~~l~~-~~~ 71 (98)
.|++|+|+.++|..++|++++|+|||++|+++|++++ +.|+ .|.||+|+|+|.+|.. ... |..+|+. .++
T Consensus 4 ~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~~~ 83 (123)
T 3n9z_C 4 DKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGL 83 (123)
T ss_dssp ---------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC----
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhcccccc
Confidence 4788999888998789999999999999999999999 9999 8999999999996532 221 2334543 456
Q ss_pred hCCeEEeeeeEECC---CeEEEecCcc
Q 034300 72 EAGYLLTCISYPTS---DCVIQSHKEE 95 (98)
Q Consensus 72 ~~~~~LaCq~~~~~---d~~i~~~~~~ 95 (98)
.+++|||||+++.+ |++|++|...
T Consensus 84 ~~~~RLaCQ~~v~~~ld~l~V~ip~~~ 110 (123)
T 3n9z_C 84 TDRSRLGCQICLTKSMDNMTVRVPETV 110 (123)
T ss_dssp ----CBCC-------------------
T ss_pred cCCeEEeeEeEEccCCCCEEEEECccc
Confidence 78999999999998 8999998764
No 23
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.89 E-value=5.8e-23 Score=145.88 Aligned_cols=84 Identities=30% Similarity=0.637 Sum_probs=75.2
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeE
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISY 82 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~ 82 (98)
.++|+| .+.|+ ++++++|+|||++|+++|+++|++|+.|.||+|+++|++|.+.+.+ ..|++++. +|++|+||++
T Consensus 237 ~~~v~~-~~~~~--~~~~~~~~~ll~a~~~~g~~~~~~C~~G~Cg~C~~~v~~G~~~~~~-~~l~~~e~-~g~~L~C~~~ 311 (321)
T 2pia_A 237 PFTVRL-SRSGT--SFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRD-MVLRDDEK-GTQIMVCVSR 311 (321)
T ss_dssp CEEEEE-TTTCC--EEEECTTSCHHHHHHHTTCCCCCSCSSSSSCTTEEEEEESCEECCC-SSCCTTTT-TTEEETTTCE
T ss_pred cEEEEE-eCCCe--EEEECCCCcHHHHHHHcCCCCCCCCCCCCCCCCEEEEecCcccccc-CCCChHHH-CCeEEEeEeE
Confidence 467888 66665 8999999999999999999999999999999999999999999876 57887777 9999999999
Q ss_pred ECCC-eEEEe
Q 034300 83 PTSD-CVIQS 91 (98)
Q Consensus 83 ~~~d-~~i~~ 91 (98)
+.+| ++|++
T Consensus 312 ~~~d~~~i~l 321 (321)
T 2pia_A 312 AKSAELVLDL 321 (321)
T ss_dssp ESSSEEEECC
T ss_pred ECCCcEEEeC
Confidence 9998 88764
No 24
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.88 E-value=7.7e-24 Score=127.36 Aligned_cols=80 Identities=26% Similarity=0.451 Sum_probs=68.1
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC-ccCCCc-cccccccEEEEeeeeeecC---CCCCCChhhhhCCeEEee
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD-LPYSCR-AGACSTCAGKLVSGSVDQS---DGSFLDDNQMEAGYLLTC 79 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~-i~~~C~-~G~Cg~C~v~v~~G~~~~~---~~~~l~~~~~~~~~~LaC 79 (98)
+|+| .++|+.++|++++|+|||++|+++|++ +|++|+ .|.||+|+++|.+|.+... +...|+ +.++++||+|
T Consensus 2 ~v~i-~~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~--~~~~g~rLaC 78 (93)
T 1l5p_A 2 TITA-VKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLE--DQPANARLAC 78 (93)
T ss_dssp EEEE-EETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHT--TSCTTEEEGG
T ss_pred eEEE-EeCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhc--CCCCCcEEee
Confidence 4565 568887899999999999999999999 999999 9999999999999987543 233455 6788999999
Q ss_pred eeEECCCe
Q 034300 80 ISYPTSDC 87 (98)
Q Consensus 80 q~~~~~d~ 87 (98)
|+++.+|+
T Consensus 79 q~~~~~d~ 86 (93)
T 1l5p_A 79 AITLSGEN 86 (93)
T ss_dssp GCEECGGG
T ss_pred ECEECCCC
Confidence 99998763
No 25
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=99.38 E-value=6.8e-13 Score=87.15 Aligned_cols=68 Identities=24% Similarity=0.555 Sum_probs=56.1
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHc-CCC-ccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeE
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEA-GVD-LPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISY 82 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~ 82 (98)
+|+| ..||+.+++++++|+|||++|+++ |+. ++++|+.|.||+|.|.| +|. .++||.+.
T Consensus 11 ~i~~-~ing~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~v-dG~-----------------~v~sC~~~ 71 (168)
T 1t3q_A 11 RISA-TINGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DGA-----------------PMRSCLTL 71 (168)
T ss_dssp EEEE-EETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGSB
T ss_pred eEEE-EECCEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEE-CCC-----------------EeechhhH
Confidence 4555 458988888899999999999996 998 99999999999999998 543 37889888
Q ss_pred ECC--CeEEEe
Q 034300 83 PTS--DCVIQS 91 (98)
Q Consensus 83 ~~~--d~~i~~ 91 (98)
+.. +..|.+
T Consensus 72 ~~~~~G~~v~T 82 (168)
T 1t3q_A 72 AVQAEGCSIET 82 (168)
T ss_dssp GGGGTTCEEEC
T ss_pred HHHhCCCeEEE
Confidence 765 666655
No 26
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=99.35 E-value=1e-12 Score=102.72 Aligned_cols=81 Identities=22% Similarity=0.442 Sum_probs=59.0
Q ss_pred CCCCEEEEEeCCCchHHHHHHHcCCCccCCC------ccccccccEEEEeeeeeecCCCC-CCChhh-----hhCCeEEe
Q 034300 11 PNGEEHEFEAQEDQYILDAAEEAGVDLPYSC------RAGACSTCAGKLVSGSVDQSDGS-FLDDNQ-----MEAGYLLT 78 (98)
Q Consensus 11 ~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C------~~G~Cg~C~v~v~~G~~~~~~~~-~l~~~~-----~~~~~~La 78 (98)
+||+ ++++++|+|||+|++++|++||+.| ..|.|+.|.|+|..+... .+.. .++++. ...+.++|
T Consensus 6 idg~--~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~-~~g~~~~~~~G~~~~~~~~~~~~a 82 (783)
T 3i9v_3 6 VNDR--IVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKG-PDGKPLLNEKGEPEIQWQPKLAAS 82 (783)
T ss_dssp CSSC--EEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC------------------CCBCSSCEET
T ss_pred ECCE--EEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEecccccc-cccccccccccccccccCCCcccc
Confidence 4886 7999999999999999999999999 489999999999532111 1111 111111 12457999
Q ss_pred eeeEECCCeEEEecCc
Q 034300 79 CISYPTSDCVIQSHKE 94 (98)
Q Consensus 79 Cq~~~~~d~~i~~~~~ 94 (98)
|++.+.++|+|++.++
T Consensus 83 C~t~v~~gm~v~t~~~ 98 (783)
T 3i9v_3 83 CVTAVADGMVVDTLSD 98 (783)
T ss_dssp TTCBCCSSEEEESSSH
T ss_pred cCCCCCCCCEEEECCH
Confidence 9999999999998764
No 27
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=99.25 E-value=1.2e-11 Score=84.82 Aligned_cols=73 Identities=21% Similarity=0.338 Sum_probs=57.6
Q ss_pred CceEEEEEEcCCC--------CEEEEEeCCCchHHHHHHHcC------CCccCCCccccccccEEEEeeeeeecCCCCCC
Q 034300 1 MAVYKIKLIGPNG--------EEHEFEAQEDQYILDAAEEAG------VDLPYSCRAGACSTCAGKLVSGSVDQSDGSFL 66 (98)
Q Consensus 1 M~~~~v~i~~~~g--------~~~~i~~~~g~tlL~a~~~~g------i~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l 66 (98)
||+++++|+..|. +.+++++++|+|||++|++.| +..+++|+.|.||+|.|.| +|.
T Consensus 3 ~m~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v-~G~--------- 72 (243)
T 1kf6_B 3 MKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNV--------- 72 (243)
T ss_dssp CEEEEEEEEECCTTTCSSCEEEEEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE-TTE---------
T ss_pred cceEEEEEEEcCCCCCCCCeeEEEEEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEE-CCE---------
Confidence 6667777765442 346889999999999999988 3367789999999999996 543
Q ss_pred ChhhhhCCeEEeeeeEECCC---eEEEe
Q 034300 67 DDNQMEAGYLLTCISYPTSD---CVIQS 91 (98)
Q Consensus 67 ~~~~~~~~~~LaCq~~~~~d---~~i~~ 91 (98)
.+|||++.+.+. ++|+-
T Consensus 73 --------~~~aC~~~~~~~~~~~~i~~ 92 (243)
T 1kf6_B 73 --------PKLACKTFLRDYTDGMKVEA 92 (243)
T ss_dssp --------EEEGGGCBGGGCTTCEEEEC
T ss_pred --------EEeeeeeEHhhCCCcEEEEe
Confidence 389999998876 77764
No 28
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=99.22 E-value=2.4e-11 Score=79.48 Aligned_cols=72 Identities=17% Similarity=0.377 Sum_probs=54.5
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHc-CCC-ccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEe
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEA-GVD-LPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLT 78 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~La 78 (98)
|+..+|+| ..||+.+++++++++|||++|++. |+. .+++|+.|.||+|.|.| +|. .++|
T Consensus 1 M~~~~i~~-~vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~v-dG~-----------------~v~s 61 (163)
T 1ffv_A 1 MAKKIITV-NVNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI-DGR-----------------SVKS 61 (163)
T ss_dssp --CEEEEE-EETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TTE-----------------EEEG
T ss_pred CCCceEEE-EECCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEE-CCc-----------------Eecc
Confidence 65555666 559998889999999999999984 664 79999999999999998 332 4778
Q ss_pred eeeEEC--CCeEEEe
Q 034300 79 CISYPT--SDCVIQS 91 (98)
Q Consensus 79 Cq~~~~--~d~~i~~ 91 (98)
|.+.+. .+..|.+
T Consensus 62 C~~~~~~~~G~~I~T 76 (163)
T 1ffv_A 62 CTHLAVQCDGSEVLT 76 (163)
T ss_dssp GGSBGGGGTTCEEEC
T ss_pred hHhhHHHhCCceEEE
Confidence 887765 4454444
No 29
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=99.21 E-value=2.6e-11 Score=79.55 Aligned_cols=72 Identities=21% Similarity=0.400 Sum_probs=54.5
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHc-CCC-ccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEe
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEA-GVD-LPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLT 78 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~La 78 (98)
|++.+|+| ..||+.+++++++++|||++|++. |+. .+++|+.|.||+|.|.| +|. -++|
T Consensus 1 M~~~~i~~-~vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~v-dG~-----------------~v~S 61 (166)
T 1n62_A 1 MAKAHIEL-TINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL-DGM-----------------SVKS 61 (166)
T ss_dssp --CEEEEE-EETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TTE-----------------EEEG
T ss_pred CCCceEEE-EECCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEE-CCc-----------------EEec
Confidence 65555666 569998889999999999999984 764 79999999999999998 332 4788
Q ss_pred eeeEEC--CCeEEEe
Q 034300 79 CISYPT--SDCVIQS 91 (98)
Q Consensus 79 Cq~~~~--~d~~i~~ 91 (98)
|.+.+. .+..|.+
T Consensus 62 C~~~~~~~~G~~V~T 76 (166)
T 1n62_A 62 CTMFAVQANGASITT 76 (166)
T ss_dssp GGSBGGGGTTCEEEC
T ss_pred hhhhHHHhCCceEEE
Confidence 888764 3444443
No 30
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=99.21 E-value=2.3e-11 Score=79.37 Aligned_cols=68 Identities=21% Similarity=0.421 Sum_probs=54.7
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHc-CCC-ccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeE
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEA-GVD-LPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISY 82 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~ 82 (98)
+|+| ..||+.+++++++++|||++|++. |+. .+++|+.|.||+|.|.| +|. .++||++.
T Consensus 4 ~i~~-~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~v-dG~-----------------~v~sC~~~ 64 (161)
T 1rm6_C 4 ILRL-TLNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV-DDR-----------------PRLACSTL 64 (161)
T ss_dssp EEEE-EETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TTE-----------------EEEGGGSB
T ss_pred eEEE-EECCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEE-CCc-----------------EEechHHH
Confidence 4555 459998888899999999999986 764 89999999999999998 432 48899887
Q ss_pred ECC--CeEEEe
Q 034300 83 PTS--DCVIQS 91 (98)
Q Consensus 83 ~~~--d~~i~~ 91 (98)
+.. +..|.+
T Consensus 65 ~~~~~G~~v~T 75 (161)
T 1rm6_C 65 AHQVAGKKVET 75 (161)
T ss_dssp GGGGTTSEEEC
T ss_pred HHHhCCceEEE
Confidence 765 555554
No 31
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=99.20 E-value=3.4e-11 Score=78.55 Aligned_cols=52 Identities=27% Similarity=0.548 Sum_probs=45.5
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHc-CCC-ccCCCccccccccEEEE
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEA-GVD-LPYSCRAGACSTCAGKL 53 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v 53 (98)
|.+.+|+| ..||+.++++++++++||++|++. |+. .+++|+.|.||+|.|.|
T Consensus 1 m~~~~i~~-~vNG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~v 54 (160)
T 3hrd_D 1 MNKITINL-NLNGEARSIVTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIF 54 (160)
T ss_dssp CCCEEEEE-EETTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEE
T ss_pred CCcceEEE-EECCEEEEEecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEE
Confidence 66556776 569998899999999999999985 874 89999999999999998
No 32
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=99.20 E-value=3.7e-11 Score=91.31 Aligned_cols=66 Identities=23% Similarity=0.492 Sum_probs=56.7
Q ss_pred cCCCCEEEEEeCCCchHHHHHHHcCCCccCCCc-------cccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeE
Q 034300 10 GPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCR-------AGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISY 82 (98)
Q Consensus 10 ~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~-------~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~ 82 (98)
.+||+ .+++++|+|||++|+++|+.+|+.|+ .|.||.|.|.| +|. + .++||++.
T Consensus 5 ~ing~--~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v-~g~---------------~-~~~aC~t~ 65 (574)
T 3c8y_A 5 IINGV--QFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EGT---------------G-LVTACDTL 65 (574)
T ss_dssp EETTE--EEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TTT---------------E-EEEGGGCB
T ss_pred EECCE--EEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEe-CCC---------------c-ccccCCCC
Confidence 34885 78899999999999999999999998 78999999998 111 2 68999999
Q ss_pred ECCCeEEEecCc
Q 034300 83 PTSDCVIQSHKE 94 (98)
Q Consensus 83 ~~~d~~i~~~~~ 94 (98)
+.++++|.+.++
T Consensus 66 v~~gm~V~T~~~ 77 (574)
T 3c8y_A 66 IEDGMIINTNSD 77 (574)
T ss_dssp CCTTCEEESSCH
T ss_pred cccceeEEecch
Confidence 999999998654
No 33
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=99.11 E-value=1.1e-10 Score=79.82 Aligned_cols=67 Identities=21% Similarity=0.463 Sum_probs=50.4
Q ss_pred Cc-eEEEEEEcCCC---------CEEEEEeCCCchHHHHHHHcC------CCccCCCccccccccEEEEeeeeeecCCCC
Q 034300 1 MA-VYKIKLIGPNG---------EEHEFEAQEDQYILDAAEEAG------VDLPYSCRAGACSTCAGKLVSGSVDQSDGS 64 (98)
Q Consensus 1 M~-~~~v~i~~~~g---------~~~~i~~~~g~tlL~a~~~~g------i~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~ 64 (98)
|+ +++++|...|+ +.+++++++|+|||++|++.| +..+++|+.|.||+|.+.| +|.+
T Consensus 1 m~~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i-~G~~------ 73 (241)
T 2bs2_B 1 MGRMLTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI-NGRP------ 73 (241)
T ss_dssp CCCEEEEEEEECCTTCTTCCCEEEEEEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE-TTEE------
T ss_pred CCceEEEEEEEeCCCCCCCCceEEEEEEeCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEE-CCCe------
Confidence 44 45666655332 346788999999999998754 4567799999999999999 6653
Q ss_pred CCChhhhhCCeEEeeeeEECC
Q 034300 65 FLDDNQMEAGYLLTCISYPTS 85 (98)
Q Consensus 65 ~l~~~~~~~~~~LaCq~~~~~ 85 (98)
+|||++.+.+
T Consensus 74 -----------~~aC~~~~~~ 83 (241)
T 2bs2_B 74 -----------SLACRTLTKD 83 (241)
T ss_dssp -----------EEGGGCBGGG
T ss_pred -----------ecchhCcHhH
Confidence 5888888764
No 34
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=98.94 E-value=1.5e-09 Score=74.04 Aligned_cols=65 Identities=26% Similarity=0.436 Sum_probs=49.5
Q ss_pred eEEEEEEcCCC--------CEEEEEeCC--CchHHHHHHHcC-----CCccCCCccccccccEEEEeeeeeecCCCCCCC
Q 034300 3 VYKIKLIGPNG--------EEHEFEAQE--DQYILDAAEEAG-----VDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLD 67 (98)
Q Consensus 3 ~~~v~i~~~~g--------~~~~i~~~~--g~tlL~a~~~~g-----i~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~ 67 (98)
+++++|+..+. +.+++++++ |+|||++|++.+ +...++|+.|.||+|.|.| +|.
T Consensus 2 ~~~~~i~R~~~~~~~~~~~~~~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~---------- 70 (238)
T 2wdq_B 2 RLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM-NGK---------- 70 (238)
T ss_dssp EEEEEEEECCTTTCSSCEEEEEEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEE-TTE----------
T ss_pred eEEEEEEEcCCCCCCCCceEEEEeecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEE-CCE----------
Confidence 35666654332 346788888 999999999987 5678899999999999998 443
Q ss_pred hhhhhCCeEEeeeeEECC
Q 034300 68 DNQMEAGYLLTCISYPTS 85 (98)
Q Consensus 68 ~~~~~~~~~LaCq~~~~~ 85 (98)
.+|||++.+.+
T Consensus 71 -------~~laC~~~~~~ 81 (238)
T 2wdq_B 71 -------NGLACITPISA 81 (238)
T ss_dssp -------EEEGGGCBGGG
T ss_pred -------EEcccccchhh
Confidence 26788887755
No 35
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=98.81 E-value=7.9e-09 Score=71.23 Aligned_cols=59 Identities=25% Similarity=0.476 Sum_probs=45.9
Q ss_pred EEEEEeCC-CchHHHHHHHcC------CCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeeeeEECC--
Q 034300 15 EHEFEAQE-DQYILDAAEEAG------VDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTS-- 85 (98)
Q Consensus 15 ~~~i~~~~-g~tlL~a~~~~g------i~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq~~~~~-- 85 (98)
.+++++++ |+|||++|++.+ +...++|+.|.||+|.|.| +|. .+|||++.+.+
T Consensus 32 ~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i-~G~-----------------~~~aC~~~~~~~~ 93 (252)
T 2h88_B 32 TYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNI-AGG-----------------NTLACTKKIDPDL 93 (252)
T ss_dssp EEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGSBCCCCT
T ss_pred EEEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEE-CCc-----------------EEccccCCHhHcC
Confidence 46778888 999999999976 2356789999999999996 443 47899998765
Q ss_pred --CeEEEe
Q 034300 86 --DCVIQS 91 (98)
Q Consensus 86 --d~~i~~ 91 (98)
.++|+-
T Consensus 94 g~~~~iep 101 (252)
T 2h88_B 94 SKTTKIYP 101 (252)
T ss_dssp TSCEEEEC
T ss_pred CCceEEec
Confidence 356653
No 36
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=98.56 E-value=1.2e-07 Score=66.72 Aligned_cols=42 Identities=26% Similarity=0.585 Sum_probs=33.9
Q ss_pred EEEEEeCC-CchHHHHHHHcCC------CccCCCccccccccEEEEeeee
Q 034300 15 EHEFEAQE-DQYILDAAEEAGV------DLPYSCRAGACSTCAGKLVSGS 57 (98)
Q Consensus 15 ~~~i~~~~-g~tlL~a~~~~gi------~i~~~C~~G~Cg~C~v~v~~G~ 57 (98)
.+++++++ |.|||++|++.+. ....+|+.|.||+|.|.| +|.
T Consensus 56 ~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~I-nG~ 104 (282)
T 3vr8_B 56 KFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNI-AGE 104 (282)
T ss_pred EEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEE-CCE
Confidence 56788888 9999999998553 355789999999999987 444
No 37
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=98.50 E-value=2.3e-07 Score=73.78 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=42.5
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHH-cCC-CccCCCccccccccEEEE
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEE-AGV-DLPYSCRAGACSTCAGKL 53 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~-~gi-~i~~~C~~G~Cg~C~v~v 53 (98)
|++++++ .||+.++++++++++||++|++ .|+ ....+|+.|.||+|.|.|
T Consensus 1 ~~~~~~~---~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~v 52 (907)
T 1vlb_A 1 MIQKVIT---VNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL 52 (907)
T ss_dssp CEEEEEE---ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE
T ss_pred CceEEEE---ECCEEEEEecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEE
Confidence 5444444 4999899999999999999998 476 489999999999999998
No 38
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=98.44 E-value=2.2e-07 Score=60.69 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=39.7
Q ss_pred EEEEcCCCCEE-EEEeCCCchHHHHHHHc-CCC-ccCCCccccccccEEEEe
Q 034300 6 IKLIGPNGEEH-EFEAQEDQYILDAAEEA-GVD-LPYSCRAGACSTCAGKLV 54 (98)
Q Consensus 6 v~i~~~~g~~~-~i~~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~ 54 (98)
|+| ..||+.+ .++++++++||++|++. |+. ...+|+.|.||+|.|.|-
T Consensus 5 i~~-~vNG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd 55 (164)
T 3nvw_A 5 LVF-FVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS 55 (164)
T ss_dssp EEE-EETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred EEE-EECCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEc
Confidence 444 3489754 56789999999999985 875 999999999999999984
No 39
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=98.43 E-value=3.6e-07 Score=68.04 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=40.8
Q ss_pred EEEEcCCCCEEEE-EeCCCchHHHHHHHcCCC-ccCCCccccccccEEEE
Q 034300 6 IKLIGPNGEEHEF-EAQEDQYILDAAEEAGVD-LPYSCRAGACSTCAGKL 53 (98)
Q Consensus 6 v~i~~~~g~~~~i-~~~~g~tlL~a~~~~gi~-i~~~C~~G~Cg~C~v~v 53 (98)
|+| ..||+.+++ +++++++||++|++.|+. ...+|+.|.||+|.|.|
T Consensus 3 ~~~-~vNg~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~~G~CGaCtV~v 51 (462)
T 2w3s_A 3 IAF-LLNGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCNEGDCGACTVMI 51 (462)
T ss_dssp EEE-EETTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSSSSSCTTEEEE
T ss_pred EEE-EECCEEEEEecCCCCCcHHHHHHHcCCCccCCCCCCCCcCCcEEEE
Confidence 444 349998888 789999999999976886 99999999999999998
No 40
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=98.33 E-value=6.3e-07 Score=71.31 Aligned_cols=50 Identities=18% Similarity=0.420 Sum_probs=42.4
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHc-CC-CccCCCccccccccEEEE
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEA-GV-DLPYSCRAGACSTCAGKL 53 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~-gi-~i~~~C~~G~Cg~C~v~v 53 (98)
|++++++ .||+.++++++++++||++|++. |+ ....+|+.|.||+|.|.|
T Consensus 1 ~~~~~~~---~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~v 52 (907)
T 1dgj_A 1 METKTLI---VNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL 52 (907)
T ss_dssp CEEEECE---ETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE
T ss_pred CceEEEE---ECCEEEEEecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEE
Confidence 5444444 49998899999999999999984 77 489999999999999998
No 41
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=97.86 E-value=2.1e-05 Score=58.30 Aligned_cols=67 Identities=19% Similarity=0.148 Sum_probs=45.7
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCC--C-c-ccc--ccccEEEEeeeeeecCCCCCCChhhhhCCeEEee
Q 034300 6 IKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYS--C-R-AGA--CSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTC 79 (98)
Q Consensus 6 v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~--C-~-~G~--Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaC 79 (98)
|+| ..||+ .+++.+|+||++||+++|+++... + + .|. |+.|.|.| +|. ++ .-+|
T Consensus 16 v~~-~~dg~--~~~~~~g~ti~~a~~~~g~~~~~~~~~~~p~g~~~~~~c~v~v-~g~---------------~~-~~ac 75 (493)
T 1y56_A 16 VTI-YFEGK--ELEAYEGEKLPVALLANEIYWLTTSNEGRKRGAFTFGPVPMTV-NGV---------------KG-LEAR 75 (493)
T ss_dssp EEE-EETTE--EEEEETTCBHHHHHHHTTCCCCEECTTSCEECSSSSSCCEEBS-SSC---------------TT-EEGG
T ss_pred EEE-EECCE--EEEecCCCHHHHHHHHCCCceecCCCCCCCCccccceEEEEEE-CCE---------------ec-ccce
Confidence 554 44896 789999999999999999975211 1 2 454 78899876 221 12 5577
Q ss_pred eeEECCCeEEEec
Q 034300 80 ISYPTSDCVIQSH 92 (98)
Q Consensus 80 q~~~~~d~~i~~~ 92 (98)
++.+..++++...
T Consensus 76 ~~~v~~Gm~v~t~ 88 (493)
T 1y56_A 76 RIKVKDGMKIERQ 88 (493)
T ss_dssp GCBCCTTCEEBCC
T ss_pred eEEcccCcEEecc
Confidence 7777777766543
No 42
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=97.68 E-value=3.1e-05 Score=63.86 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=41.2
Q ss_pred EEEEEcCCCCEEEE-EeCCCchHHHHHHHc-CCC-ccCCCccccccccEEEEe
Q 034300 5 KIKLIGPNGEEHEF-EAQEDQYILDAAEEA-GVD-LPYSCRAGACSTCAGKLV 54 (98)
Q Consensus 5 ~v~i~~~~g~~~~i-~~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~ 54 (98)
.|+| ..||+.+++ +++++.+||+.|++. |+. ...+|+.|.||.|.|.|-
T Consensus 5 ~i~~-~vNg~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~ 56 (1332)
T 3unc_A 5 ELVF-FVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS 56 (1332)
T ss_dssp CEEE-EETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred cEEE-EECCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEe
Confidence 4565 559986665 689999999999984 876 899999999999999983
No 43
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=97.06 E-value=0.00054 Score=56.59 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=39.7
Q ss_pred EEEEcCCCCEEEE-EeCCCchHHHHHHHc-CCC-ccCCCccccccccEEEEe
Q 034300 6 IKLIGPNGEEHEF-EAQEDQYILDAAEEA-GVD-LPYSCRAGACSTCAGKLV 54 (98)
Q Consensus 6 v~i~~~~g~~~~i-~~~~g~tlL~a~~~~-gi~-i~~~C~~G~Cg~C~v~v~ 54 (98)
++| ..||+.+++ .++|..|||+.|+.+ ++. -..+|+.|-||.|.|-|-
T Consensus 10 l~F-~vNG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~ 60 (1335)
T 3zyv_A 10 LIF-FVNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMIS 60 (1335)
T ss_dssp EEE-EETTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEE
T ss_pred EEE-EECCEEEEeCCCCcCccHHHHHhccCCCcccccccCCCCCcceEEEEe
Confidence 666 569976555 367999999999984 776 889999999999999984
No 44
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=96.84 E-value=0.0022 Score=51.27 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=50.4
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCC-----------ccccccccEEEEe---eeeeecCCCCCCChhh
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSC-----------RAGACSTCAGKLV---SGSVDQSDGSFLDDNQ 70 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C-----------~~G~Cg~C~v~v~---~G~~~~~~~~~l~~~~ 70 (98)
+|+| ..||+ ++++.+|+||++||+.+|+.+...| ..|.|..|.+.+- .|...
T Consensus 22 ~~~~-~~dG~--~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~~~~c~~~~v~v~~~~~g~~~----------- 87 (965)
T 2gag_A 22 ALSL-TVDGA--KLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAAGVEEPNALVTVSARHEQDID----------- 87 (965)
T ss_dssp EEEE-EETTE--EEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCSSTTCCSCEEEECCCSTTCCC-----------
T ss_pred eEEE-EECCE--EEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccCCccCCceEEEEccCCCCCcC-----------
Confidence 4555 44896 7889999999999999999865444 4578999999986 33210
Q ss_pred hhCCeEEeeeeEECCCeEEEe
Q 034300 71 MEAGYLLTCISYPTSDCVIQS 91 (98)
Q Consensus 71 ~~~~~~LaCq~~~~~d~~i~~ 91 (98)
.....+|++.+..++.++.
T Consensus 88 --~~~~~ac~~~~~~gm~~~~ 106 (965)
T 2gag_A 88 --ESMLPATTVPVTEDLNATL 106 (965)
T ss_dssp --EEEEEGGGCBCCTTEEEEE
T ss_pred --CccccceeeecccceEeec
Confidence 1135677777777776654
No 45
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=95.52 E-value=0.016 Score=34.36 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=34.3
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEe
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLV 54 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~ 54 (98)
|.+-.|.++.||++...+++.+|.||-+|+.++ +.. ++-.+-.|.|...
T Consensus 11 ~~~~~irvhLPNqQrT~V~VrpG~tlrdaL~Ka---Lk~--R~L~pe~C~Vy~~ 59 (96)
T 3ny5_A 11 MQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKA---LMM--RGLIPECCAVYRI 59 (96)
T ss_dssp CSSCEEEEEETTTEEEEEECCTTCBHHHHHHHH---HHT--TTCCGGGEEEEEC
T ss_pred hhhCEEEEECCCCceEEEEecCCcCHHHHHHHH---HHH--cCCChHHeEEEEc
Confidence 445567777899988889999999999988663 000 1125667777765
No 46
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=94.68 E-value=0.043 Score=31.28 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=30.9
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEe
Q 034300 6 IKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLV 54 (98)
Q Consensus 6 v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~ 54 (98)
|.++.||++...+++.+|.||-+|+.++ +.. ++-.+-.|.|...
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~Ka---Lk~--R~L~pe~C~V~~~ 47 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKA---LKV--RGLQPECCAVFRL 47 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHH---HHT--TTCCGGGEEEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHH---HHH--cCCCHHHeEEEEe
Confidence 5556699988889999999999988663 000 1225667777765
No 47
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=94.42 E-value=0.051 Score=31.56 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=30.9
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHc----CCCccCCCccccccccEEEEe
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEA----GVDLPYSCRAGACSTCAGKLV 54 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~----gi~i~~~C~~G~Cg~C~v~v~ 54 (98)
.|.++.||++...+++.+|+||-+|+.++ |+ .+-.|.|...
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L---------~pe~C~Vy~~ 53 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGL---------NQDCCVVYRL 53 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTC---------CSSSEEEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC---------CHHHeEEEEc
Confidence 46667899988899999999999988653 33 3556666654
No 48
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=93.84 E-value=0.077 Score=31.33 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=31.7
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHc----CCCccCCCccccccccEEEEe
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEA----GVDLPYSCRAGACSTCAGKLV 54 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~----gi~i~~~C~~G~Cg~C~v~v~ 54 (98)
.|.++.||++...+++.+|.||-+|+.++ |+ .+-.|.|...
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L---------~pe~C~Vy~~ 63 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGL---------IPECCAVYRI 63 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTC---------CGGGEEEEEE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC---------CHHHcEEEEc
Confidence 46666799988889999999999988653 44 5667777755
No 49
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=92.91 E-value=0.14 Score=30.80 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=31.8
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHc----CCCccCCCccccccccEEEEe
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEA----GVDLPYSCRAGACSTCAGKLV 54 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~----gi~i~~~C~~G~Cg~C~v~v~ 54 (98)
.|.++.||++...|+|.+|.||-||+.++ |+ .+-.|.|...
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L---------~pe~C~Vy~~ 64 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGL---------QPECCAVFRL 64 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTC---------CTTTEEEEEC
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC---------CHHHceeEEc
Confidence 46777899988899999999999988653 44 4666777755
No 50
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=92.10 E-value=0.16 Score=29.67 Aligned_cols=32 Identities=19% Similarity=0.501 Sum_probs=26.3
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHH----cCCC
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEE----AGVD 36 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~----~gi~ 36 (98)
.|+|+.++++...|.+.++.+|.|.+.+ .|++
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 5777789999889999999999887654 5665
No 51
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=91.75 E-value=0.4 Score=28.54 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=24.9
Q ss_pred ceEEEEEEcCCCCEEE--EEeCCCchHHHHHHHcC
Q 034300 2 AVYKIKLIGPNGEEHE--FEAQEDQYILDAAEEAG 34 (98)
Q Consensus 2 ~~~~v~i~~~~g~~~~--i~~~~g~tlL~a~~~~g 34 (98)
..++|+|+..++.... |. +.+++|+++|.++.
T Consensus 7 k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 7 KHITVTVIHGDQTENVFEFD-TDAKYLGEVLESEN 40 (101)
T ss_dssp EEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTT
T ss_pred eEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcC
Confidence 4678888887776544 55 77899999999887
No 52
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=90.63 E-value=0.34 Score=26.22 Aligned_cols=28 Identities=29% Similarity=0.283 Sum_probs=21.1
Q ss_pred EEcCCCCEEEEEeCCCchHHHHHHHcCCCc
Q 034300 8 LIGPNGEEHEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 8 i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i 37 (98)
+..|+|+ .++++.|.|+++.+.+.+..+
T Consensus 5 i~~p~g~--~~~~~~g~T~~dla~~i~~~l 32 (73)
T 2kmm_A 5 VFTPKGE--IKRLPQGATALDFAYSLHSDL 32 (73)
T ss_dssp EECTTCC--EEEECTTCBHHHHHHHHCSHH
T ss_pred EEcCCCC--EEEcCCCCcHHHHHHHHhhcc
Confidence 3347886 578899999999998765444
No 53
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.56 E-value=0.4 Score=28.40 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=29.0
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCccC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDLPY 39 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i~~ 39 (98)
|.|++|+|....|+..++++++..|+.+.= .+.|++...
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~q 68 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNK 68 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGG
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHH
Confidence 356788887778888899999999987643 345776443
No 54
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=90.43 E-value=0.51 Score=26.26 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=25.6
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCcc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLP 38 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~ 38 (98)
+++|+++ .....++++++|.|+.|.+.+.|++..
T Consensus 2 ~v~Vkl~--g~~~~~~ev~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 2 NVTVEVV--GEETSEVAVDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp EEEEECS--SSSEEEEECSTTCSHHHHHHTTCCCSS
T ss_pred EEEEEEe--CccceeEEcCCCCcHHHHHHHcCCCcc
Confidence 4566662 223456899999999999999999865
No 55
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=90.04 E-value=0.45 Score=26.88 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=25.2
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCcc
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLP 38 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~ 38 (98)
.|.++.|+|. .++.+.|.|.+|+|.+-+-.+.
T Consensus 7 ~i~v~tP~G~--~~~lp~GaT~~D~A~~Ih~~lg 38 (78)
T 3hvz_A 7 EVFVFTPKGD--VISLPIGSTVIDFAYAIHSAVG 38 (78)
T ss_dssp EEEEECTTSC--EEEEETTCBHHHHHHHHCHHHH
T ss_pred eEEEECCCCC--EEEecCCCCHHHHHHHhhhhhh
Confidence 4677789997 6889999999999987544443
No 56
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=89.96 E-value=0.54 Score=25.73 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=28.4
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCc
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDL 37 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i 37 (98)
|..++|++...+|+...+++.+..|+.+.- .+.|++.
T Consensus 1 m~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~ 41 (79)
T 2uyz_B 1 MEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM 41 (79)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCc
Confidence 777889987789998899999999987643 2356653
No 57
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=89.88 E-value=0.56 Score=27.48 Aligned_cols=36 Identities=8% Similarity=0.099 Sum_probs=28.1
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCc
Q 034300 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDL 37 (98)
Q Consensus 2 ~~~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i 37 (98)
+|+.|.+..+.|+..++++.+..|+.+.= .+.|++.
T Consensus 20 ~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~ 59 (93)
T 3plu_A 20 HMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP 59 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCG
T ss_pred ceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCH
Confidence 46788887789999999999999998742 3456654
No 58
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=87.81 E-value=0.95 Score=33.92 Aligned_cols=39 Identities=28% Similarity=0.205 Sum_probs=28.7
Q ss_pred EEEEEeCCCchHHHHHHHcCCCccCCCccccccccEEEEeeeeeecC
Q 034300 15 EHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQS 61 (98)
Q Consensus 15 ~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~ 61 (98)
+++++++++.|+||+|..-. ..+|+. +|.++| +|.+...
T Consensus 44 ~y~v~~~~~~~vLd~L~~ik---~l~fr~----sCam~I-NG~~~la 82 (514)
T 3kwl_A 44 SYFLEYQEDQYLLDLLKQLK---GVSYSE----NIALKI-NQIAVFE 82 (514)
T ss_dssp EEEEECCTTCBHHHHHTTST---TCCCCS----SCCEEE-TTEEECS
T ss_pred EEEEeCCCCCcHHHHHHHhh---hCeeec----cceEEE-CCEehhh
Confidence 45678889999999998755 555666 677775 7776554
No 59
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=85.29 E-value=1.8 Score=23.51 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=26.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i 37 (98)
.++|++...+|+...+++++..|+.+.=. ..|++.
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 42 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 42 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCH
Confidence 46788877899988999999999886432 346653
No 60
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=85.28 E-value=1.2 Score=28.76 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=28.0
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEA 33 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~ 33 (98)
|.+|.|..+-|...+++++.++.||+.++.-
T Consensus 7 ml~i~f~t~LG~~V~vdve~~~~~l~v~R~y 37 (184)
T 3kdv_A 7 MLHIEFITDLGAKVTVDVESADKLLDVQRQY 37 (184)
T ss_dssp CEEEEEECTTCCEEEEEESSGGGHHHHHHHH
T ss_pred eEEEEEecCCCceEEEecCCHHHHHHHHHHh
Confidence 6789999999998999999999999999873
No 61
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=84.07 E-value=1.7 Score=24.06 Aligned_cols=29 Identities=14% Similarity=0.353 Sum_probs=22.6
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 2 ~~~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
.+++|+|...+|+...+++++..|+.+.-
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK 34 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLK 34 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHH
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHH
Confidence 45677776678888889999999987743
No 62
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=84.03 E-value=2.1 Score=25.35 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
.++|+|...+|+..++++++..|+.+.
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dL 33 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDL 33 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHH
Confidence 357888778999999999999998763
No 63
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=83.96 E-value=0.83 Score=26.30 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCEEEEEeCCC-chHHHHHHHcCCC
Q 034300 4 YKIKLIGPNGEEHEFEAQED-QYILDAAEEAGVD 36 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g-~tlL~a~~~~gi~ 36 (98)
++|++ ||+ .++++++ .||.+.+...+++
T Consensus 21 M~I~v---NGe--~~el~~~~~Tv~dLL~~L~~~ 49 (87)
T 1tyg_B 21 HMLQL---NGK--DVKWKKDTGTIQDLLASYQLE 49 (87)
T ss_dssp -CEEE---TTE--EECCSSSCCBHHHHHHHTTCT
T ss_pred eEEEE---CCE--EEECCCCCCcHHHHHHHhCCC
Confidence 34555 786 6778888 9999999998765
No 64
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=83.43 E-value=2.3 Score=23.12 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=25.6
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i 37 (98)
+++|+|...+|+...+++++..|+.+.- ...|++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~ 41 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 41 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 4567777778888899999999988743 2346554
No 65
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=83.36 E-value=1.8 Score=24.21 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+++|+|...+|+...+++++..|+.+.-
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK 31 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLK 31 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHH
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHH
Confidence 5678776678888889999999987743
No 66
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=82.48 E-value=1.3 Score=24.82 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=22.6
Q ss_pred EEEEEcCCCCEEEEEeC--CCchHHHHHHHcCCCc
Q 034300 5 KIKLIGPNGEEHEFEAQ--EDQYILDAAEEAGVDL 37 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~--~g~tlL~a~~~~gi~i 37 (98)
+|++ ||+ .++++ ++.||.+.+...|++.
T Consensus 2 ~I~v---NGe--~~e~~~~~~~Tl~~LL~~l~~~~ 31 (78)
T 2k5p_A 2 NLTV---NGK--PSTVDGAESLNVTELLSALKVAQ 31 (78)
T ss_dssp EEEE---TTE--EEECSSCSCEEHHHHHHHHTCSC
T ss_pred EEEE---CCE--EEEcCCCCCCcHHHHHHHcCCCC
Confidence 4566 786 67777 8999999999999873
No 67
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=82.39 E-value=2.4 Score=25.89 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
++.|+|....|+..++++++..|+.+.=
T Consensus 17 ~m~I~vktl~G~~~~lev~~s~TV~~lK 44 (125)
T 2gow_A 17 MINLRLILVSGKTKEFLFSPNDSASDIA 44 (125)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHH
T ss_pred eEEEEEEeCCCCEEEEEeCCccHHHHHH
Confidence 4678887788998999999999987643
No 68
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=81.65 E-value=7.5 Score=24.32 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=42.8
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEe
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLT 78 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~La 78 (98)
+++|+|...+|+...+++++..|+.+.= ...|++.... ..+..|.. ..+...|++-.+..+..+-
T Consensus 20 ~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~Q----------rL~~~g~~-L~d~~tL~~~~i~~~~~l~ 88 (172)
T 3u30_A 20 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ----------RLIFAGKQ-LEDGRTLSDYNIQKESTLH 88 (172)
T ss_dssp CEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGE----------EEEETTEE-CCTTCBTGGGTCCTTCEEE
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHE----------EEEECCcc-ccccCCHhHcCCcccceee
Confidence 4567776578988899999999998743 3356554321 11122322 2344455555555555555
Q ss_pred eeeEECCCeEE
Q 034300 79 CISYPTSDCVI 89 (98)
Q Consensus 79 Cq~~~~~d~~i 89 (98)
...+..+.+.|
T Consensus 89 l~~~~~gg~~i 99 (172)
T 3u30_A 89 LVLRLRGGMQI 99 (172)
T ss_dssp EEECCCCCEEE
T ss_pred eeecccccccc
Confidence 55444444433
No 69
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=81.27 E-value=0.86 Score=30.53 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=20.5
Q ss_pred HHHHHHHcCCCc------cCCCccccccccEEEEe
Q 034300 26 ILDAAEEAGVDL------PYSCRAGACSTCAGKLV 54 (98)
Q Consensus 26 lL~a~~~~gi~i------~~~C~~G~Cg~C~v~v~ 54 (98)
+.+ +.+.|++. ...||.|.||.|.+...
T Consensus 206 v~~-l~~~gv~~~vs~e~~m~CG~G~C~~C~~~~~ 239 (262)
T 1ep3_B 206 VAK-KYDQLERLYISMESRMACGIGACYACVEHDK 239 (262)
T ss_dssp HHH-HTTTCSSEEEECCCCCSSSSSSSCTTEEEET
T ss_pred HHH-HHhCCCCEEEEecccccCcccccccCCcccc
Confidence 444 55567763 36699999999999864
No 70
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=81.26 E-value=2.9 Score=22.87 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
+++|+|...+|+...+++++..|+.+.
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~l 31 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVL 31 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHH
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHH
Confidence 456777667788889999999998774
No 71
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=80.52 E-value=2.2 Score=24.10 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=21.3
Q ss_pred CceEEEEEEcCCCC--EEEEEeCCCchHHHH
Q 034300 1 MAVYKIKLIGPNGE--EHEFEAQEDQYILDA 29 (98)
Q Consensus 1 M~~~~v~i~~~~g~--~~~i~~~~g~tlL~a 29 (98)
|.+++|+|..++|+ ..++++++..|+.+.
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~l 35 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHL 35 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHH
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHH
Confidence 45567888777776 566777799998774
No 72
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=79.24 E-value=4.5 Score=22.16 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=25.9
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i 37 (98)
.++|+|...+|+...+++.+..|+.+.- ...|++.
T Consensus 12 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 50 (88)
T 3dbh_I 12 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 50 (88)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred cEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCH
Confidence 4577776678988899999999987743 2346664
No 73
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=79.12 E-value=2.5 Score=22.58 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
++|+|.. +|+...+++++..|+.+.-
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK 30 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFK 30 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHH
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHH
Confidence 5777755 7887889999999987743
No 74
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=78.70 E-value=3.3 Score=23.36 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=23.6
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCchHHHHHHH
Q 034300 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEE 32 (98)
Q Consensus 2 ~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~ 32 (98)
.+++|+|...+|+...+++++..|+.+.-.+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~ 36 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSK 36 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHH
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHH
Confidence 4567777666788788999999999885544
No 75
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=77.98 E-value=3.8 Score=22.74 Aligned_cols=28 Identities=4% Similarity=0.063 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+++|+|...+|+...+++.+..|+.+.-
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK 32 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFK 32 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHH
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHH
Confidence 4567776678988899999999988743
No 76
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=77.22 E-value=2.2 Score=23.06 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCC--EEEEEeCCCchHHHHHHHcCCC
Q 034300 3 VYKIKLIGPNGE--EHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 3 ~~~v~i~~~~g~--~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
.++|++ ||+ +.+++++++.|+.+.+...+++
T Consensus 4 ~m~i~v---Ng~~~~~~~~~~~~~tv~~Ll~~l~~~ 36 (70)
T 1ryj_A 4 GMKFTV---ITDDGKKILESGAPRRIKDVLGELEIP 36 (70)
T ss_dssp CEEEEE---EETTEEEEEEESSCCBHHHHHHHTTCC
T ss_pred eEEEEE---eCccCceeEECCCCCcHHHHHHHhCCC
Confidence 346666 444 2458889999999999998765
No 77
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=76.97 E-value=4.1 Score=23.69 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=20.9
Q ss_pred ceEEEEEEcCCCC--EEEEEeCCCchHHHH
Q 034300 2 AVYKIKLIGPNGE--EHEFEAQEDQYILDA 29 (98)
Q Consensus 2 ~~~~v~i~~~~g~--~~~i~~~~g~tlL~a 29 (98)
..++|+|..++|+ ..++++++..|+.+.
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~L 51 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKL 51 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHH
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHH
Confidence 3467888777786 468888999998763
No 78
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=76.71 E-value=2.6 Score=22.95 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=38.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCccCCCccccccccEEEEe-eeeeecCCCCCCChhhhhCCeEEe
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDLPYSCRAGACSTCAGKLV-SGSVDQSDGSFLDDNQMEAGYLLT 78 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i~~~C~~G~Cg~C~v~v~-~G~~~~~~~~~l~~~~~~~~~~La 78 (98)
++|+|...+|+...+++++..|+.+.-. +.|++... .+++ .|.. ..+...|++-.+..+..+-
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~-----------qrL~~~g~~-L~d~~tL~~~~i~~~~~i~ 71 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQ-----------QRLIFAGKQ-LEDGRTLSDYNIHNHSALY 71 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGG-----------EEEEETBEE-CCTTCBTTTTTCCTTCEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHH-----------EEEEECCeE-CCCCCCHHHCCCCCCCEEE
Confidence 4567766788888999999999887532 34655432 1222 3332 3344455554455555554
Q ss_pred eeeE
Q 034300 79 CISY 82 (98)
Q Consensus 79 Cq~~ 82 (98)
...+
T Consensus 72 l~~r 75 (85)
T 3n3k_B 72 LLLK 75 (85)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 4433
No 79
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=76.59 E-value=2 Score=25.23 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=18.7
Q ss_pred EEEEeCCCchHHHHHHHcCCCc
Q 034300 16 HEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 16 ~~i~~~~g~tlL~a~~~~gi~i 37 (98)
..+++++|.|+.+++.+.|+.-
T Consensus 28 ~~~~v~~g~TV~daI~~~gi~~ 49 (97)
T 2hj1_A 28 KSFQVDEGITVQTAITQSGILS 49 (97)
T ss_dssp EEEEEETTCBHHHHHHHHTHHH
T ss_pred EEEEcCCCCcHHHHHHHcCCCc
Confidence 3568899999999999999853
No 80
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=76.07 E-value=9.6 Score=22.42 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=44.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEee
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTC 79 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaC 79 (98)
++|.+...+|+...+++++..|+.+.-. ..|++....- .+..|.. +.+...|++-....+..|-.
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qr----------Li~~Gk~-L~D~~tL~~ygI~~gstI~l 78 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQR----------LIWAGKQ-LEDGRTLSDYNIQRESTLHL 78 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEE----------EEETTEE-CCTTCBTTTTTCCSSCEEEE
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEE----------EEECCEE-CCCCCcHHHCCCCCCCEEEE
Confidence 5677777889988999999999877432 3465532211 1112322 23444565555566666666
Q ss_pred eeEECCCeEE
Q 034300 80 ISYPTSDCVI 89 (98)
Q Consensus 80 q~~~~~d~~i 89 (98)
..+..+...+
T Consensus 79 ~~~~~GG~~~ 88 (114)
T 2kdi_A 79 VLRLRGGSMG 88 (114)
T ss_dssp EECCCSSCCC
T ss_pred EEEcCCCcee
Confidence 6665555443
No 81
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=76.02 E-value=2.4 Score=22.59 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=21.6
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
+|++ ||+ +++++++.|+.+.+...+++
T Consensus 2 ~i~v---Ng~--~~~~~~~~tv~~ll~~l~~~ 28 (66)
T 1f0z_A 2 QILF---NDQ--AMQCAAGQTVHELLEQLDQR 28 (66)
T ss_dssp CEEE---SSC--EECCCTTCCHHHHHHHHTCC
T ss_pred EEEE---CCE--EEEcCCCCcHHHHHHHcCCC
Confidence 3555 786 67789999999999988765
No 82
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=75.53 E-value=2.5 Score=23.24 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=20.8
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
+|++ ||+ .+++ ++.||.+.+.+.|++
T Consensus 2 ~I~v---NG~--~~e~-~~~Tl~~LL~~l~~~ 27 (73)
T 2kl0_A 2 LVTI---NGE--QREV-QSASVAALMTELDCT 27 (73)
T ss_dssp CEEE---TTE--EECC-CCSBHHHHHHHTTCC
T ss_pred EEEE---CCE--EEEc-CCCcHHHHHHHcCCC
Confidence 3555 786 5667 889999999999887
No 83
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=75.18 E-value=4.6 Score=21.24 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+|++..++|+...+++++..|+.+.-
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK 27 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIK 27 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHH
Confidence 46665678888899999999987743
No 84
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=74.73 E-value=6.5 Score=21.87 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=22.2
Q ss_pred EEEEcCCCCEEEEEeCC-CchHHHHHHHcCCCccC
Q 034300 6 IKLIGPNGEEHEFEAQE-DQYILDAAEEAGVDLPY 39 (98)
Q Consensus 6 v~i~~~~g~~~~i~~~~-g~tlL~a~~~~gi~i~~ 39 (98)
++|..|+|+ ..+++. |.|+++.+...+-.+..
T Consensus 12 i~I~lpdG~--~~~~~~~~~T~~dia~~i~~~l~~ 44 (88)
T 1wwt_A 12 IKVTLPDGK--QVDAESWKTTPYQIACGISQGLAD 44 (88)
T ss_dssp EEEECTTSC--EEEEETTTCCHHHHHHHSSTTTGG
T ss_pred EEEEECCCC--EEEcccCCCCHHHHHHHhhhcccc
Confidence 444457887 456676 89999999887555443
No 85
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=74.61 E-value=5.2 Score=22.04 Aligned_cols=35 Identities=6% Similarity=0.095 Sum_probs=25.4
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i 37 (98)
.++|++...+|+...+++++..|+.+.=. ..|++.
T Consensus 17 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 55 (88)
T 4eew_A 17 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 55 (88)
T ss_dssp EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 35677766789888899999999887432 346554
No 86
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=74.38 E-value=5.8 Score=22.04 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
++|++...+|+..++++++..|+.+.=
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK 37 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVK 37 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHH
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHH
Confidence 456666678888899999999987743
No 87
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=74.32 E-value=2.8 Score=24.47 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=19.8
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+|+|...+|+...+++++..|+.+.=
T Consensus 3 ~I~Vk~~~g~~~~l~v~~~~TV~~LK 28 (106)
T 3m62_B 3 SLTFKNFKKEKVPLDLEPSNTILETK 28 (106)
T ss_dssp CEEEECTTCCEEEECCCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 35555568888889999999998743
No 88
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.11 E-value=6.3 Score=21.09 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+++|++...+|+...+++++..|+.+.-
T Consensus 7 ~m~i~vk~~~g~~~~~~v~~~~tV~~LK 34 (81)
T 2dzi_A 7 GMQLTVKALQGRECSLQVPEDELVSTLK 34 (81)
T ss_dssp SEEEEEEETTSCEEEEEECSSCBHHHHH
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 4566665577888889999999987743
No 89
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=73.57 E-value=8.6 Score=22.63 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=26.8
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcC
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAG 34 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~g 34 (98)
+..|+|+..||..+++.+.+++|..++++..-
T Consensus 9 k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~ 40 (100)
T 1wgr_A 9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLV 40 (100)
T ss_dssp CEEEEEEETTSCEEEEEECTTCCHHHHHHHHH
T ss_pred CEEEEEEecCCCEEEEEECCCCcHHHHHHHHH
Confidence 35677878999999999999999999987643
No 90
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=73.14 E-value=7.2 Score=21.70 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=26.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCcc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDLP 38 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i~ 38 (98)
.++|+|...+|+...+++.+..|+.+.= ...|++..
T Consensus 17 ~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 56 (91)
T 3v6c_B 17 SMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPD 56 (91)
T ss_dssp SEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred eEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChh
Confidence 3567776678988899999999988743 23566644
No 91
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=73.07 E-value=1.9 Score=24.53 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=18.6
Q ss_pred CceEEEEEEcCCCCEEEEEeC--CCchHHHH
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQ--EDQYILDA 29 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~--~g~tlL~a 29 (98)
||. |+|...+|+..+++++ +.+|+.+.
T Consensus 1 mmq--I~VKtl~g~~~~i~v~v~~~~TV~~l 29 (87)
T 2lxa_A 1 MVH--LTLKKIQAPKFSIEHDFSPSDTILQI 29 (87)
T ss_dssp CCE--EEEEECSSSCEECCEECCTTCBHHHH
T ss_pred CEE--EEEEcCCCCEEEEEEcCCCCCcHHHH
Confidence 544 5555567876677644 99999874
No 92
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=72.89 E-value=5 Score=21.09 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=19.7
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+|++..++|+...+++++..|+.+.-
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK 27 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVK 27 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHH
Confidence 45555568888889999999987743
No 93
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=71.80 E-value=7.5 Score=23.35 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
.+.|+|....|+..++++++.+|+.+.
T Consensus 16 ~m~I~vKtl~G~t~~lev~~s~TV~~l 42 (116)
T 1wgh_A 16 MINLRLILVSGKTKEFLFSPNDSASDI 42 (116)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred eEEEEEEeCCCCEEEEEECCcCHHHHH
Confidence 357888777888899999999998764
No 94
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=71.57 E-value=1.8 Score=24.85 Aligned_cols=24 Identities=29% Similarity=0.783 Sum_probs=18.0
Q ss_pred HHHHHHHcCCC--c---cCCCcccccccc
Q 034300 26 ILDAAEEAGVD--L---PYSCRAGACSTC 49 (98)
Q Consensus 26 lL~a~~~~gi~--i---~~~C~~G~Cg~C 49 (98)
-|+.+.+.|.- + +.+|..|.|+.|
T Consensus 36 DL~~Le~~G~l~R~~~~~~~C~sgsC~sC 64 (87)
T 2k02_A 36 MLERMEAMGKVVRISETSEGCLSGSCKSC 64 (87)
T ss_dssp HHHHHHTTCCSEEEEEECCSSCSSSSSSC
T ss_pred HHHHHHHCCCEEEEecCCCCCCCCCCCCC
Confidence 56777778865 3 368988889988
No 95
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=71.43 E-value=3.3 Score=20.07 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEeCCCchHHHHHHHcCCCcc
Q 034300 17 EFEAQEDQYILDAAEEAGVDLP 38 (98)
Q Consensus 17 ~i~~~~g~tlL~a~~~~gi~i~ 38 (98)
.+.+.+|+||-..+.+.|+.+.
T Consensus 4 ~y~V~~GDtl~~Ia~~~~~~~~ 25 (48)
T 1e0g_A 4 TYRVRKGDSLSSIAKRHGVNIK 25 (48)
T ss_dssp EEEECTTCCHHHHHHHHTCCHH
T ss_pred EEEEcCCCcHHHHHHHHCcCHH
Confidence 5778999999999999988754
No 96
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=70.73 E-value=8.9 Score=22.33 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+++|+|...+|+...+++++..|+.+.-
T Consensus 35 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK 62 (111)
T 2ojr_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVK 62 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHH
T ss_pred eEEEEEEcCCCCEEEEEeCCCCCHHHHH
Confidence 5678776678888889999999987743
No 97
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=69.55 E-value=7.2 Score=22.57 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=21.0
Q ss_pred ceEEEEEEcCCCCEEEE--EeCCCchHHHHH
Q 034300 2 AVYKIKLIGPNGEEHEF--EAQEDQYILDAA 30 (98)
Q Consensus 2 ~~~~v~i~~~~g~~~~i--~~~~g~tlL~a~ 30 (98)
..++|+|...+|+..++ ++++..|+.+.=
T Consensus 18 ~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK 48 (98)
T 4a20_A 18 AAVHLTLKKIQAPKFSIEHDFSPSDTILQIK 48 (98)
T ss_dssp CCEEEEEEECSSSCEEEEEEECTTCBHHHHH
T ss_pred CCEEEEEEcCCCCEEEEEEecCCCChHHHHH
Confidence 35678887778875555 566999998743
No 98
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=69.47 E-value=6.3 Score=22.40 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=24.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCc
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDL 37 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i 37 (98)
++|+|...+|+.+.+++++..|+.+.= ...|++.
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 60 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 60 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh
Confidence 456665578988899999999988743 2346554
No 99
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=69.00 E-value=9.8 Score=22.22 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=25.8
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i 37 (98)
.++|+|...+|+...+.+.+..|+.+.=. ..|++.
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 73 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 73 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCh
Confidence 45777766789888999999999887432 346654
No 100
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=68.64 E-value=6.9 Score=21.75 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=39.1
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEeee
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCI 80 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaCq 80 (98)
+|+|...+|+...+++++..|+.+.= ...|++.... + -+..|.. ..+...|++-....+..+-..
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-r---------Li~~Gk~-L~D~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ-R---------LIYSGKQ-MNDEKTAADYKILGGSVLHLV 70 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGC-E---------EEETTEE-CCTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHE-E---------EEECCeE-CCCCCcHHHcCCCCCCEEEEE
Confidence 35554568888899999999988743 2356654332 1 1123332 233445555555566666555
Q ss_pred eEECCC
Q 034300 81 SYPTSD 86 (98)
Q Consensus 81 ~~~~~d 86 (98)
.+..+.
T Consensus 71 ~rl~Gg 76 (88)
T 4fbj_B 71 LALRGG 76 (88)
T ss_dssp CBCC--
T ss_pred EECCCC
Confidence 555443
No 101
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=67.73 E-value=6.7 Score=22.29 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i 37 (98)
+++|+|. .+|+.+.+++++..|+.+.=. ..|++.
T Consensus 17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~ 54 (95)
T 1v86_A 17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPP 54 (95)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCS
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 4566663 467778899999999877433 356653
No 102
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=67.50 E-value=7.4 Score=21.73 Aligned_cols=72 Identities=17% Similarity=0.220 Sum_probs=41.5
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCccCCCccccccccEEEEe-eeeeecCCCCCCChhhhhCCeEEee
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDLPYSCRAGACSTCAGKLV-SGSVDQSDGSFLDDNQMEAGYLLTC 79 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i~~~C~~G~Cg~C~v~v~-~G~~~~~~~~~l~~~~~~~~~~LaC 79 (98)
+|+|...+|+.+.+++.+..|+.+.- ...|++... .+++ .|.. +.+...|++-.+..+..+-.
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~-----------qrL~~~G~~-L~d~~tL~~~~i~~~~~i~l 70 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ-----------QRLIFAGKQ-LEDGRTLSDYNIQKESTLHL 70 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGG-----------EEEEETTEE-CCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhH-----------EEEEECCEE-CCCCCcHHHcCCCCCCEEEE
Confidence 45555568888899999999988743 234665432 1222 3332 33444566555666666666
Q ss_pred eeEECCCeE
Q 034300 80 ISYPTSDCV 88 (98)
Q Consensus 80 q~~~~~d~~ 88 (98)
..+..+...
T Consensus 71 ~~r~~gG~~ 79 (96)
T 3k9o_B 71 VLRLRGYAD 79 (96)
T ss_dssp EECCCC---
T ss_pred EEEcCCCCc
Confidence 666555543
No 103
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=66.62 E-value=7.7 Score=21.95 Aligned_cols=30 Identities=7% Similarity=-0.084 Sum_probs=21.5
Q ss_pred CceEEEEEEcCCCC-EEEEEeCCCchHHHHH
Q 034300 1 MAVYKIKLIGPNGE-EHEFEAQEDQYILDAA 30 (98)
Q Consensus 1 M~~~~v~i~~~~g~-~~~i~~~~g~tlL~a~ 30 (98)
|++++|+|...+.. ..++++++..|+.+.=
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK 35 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFK 35 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHH
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHH
Confidence 67788888544331 4789999999987643
No 104
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=66.61 E-value=2.9 Score=23.38 Aligned_cols=25 Identities=32% Similarity=0.788 Sum_probs=17.5
Q ss_pred HHHHHHHcCCC-----ccCCCccccccccE
Q 034300 26 ILDAAEEAGVD-----LPYSCRAGACSTCA 50 (98)
Q Consensus 26 lL~a~~~~gi~-----i~~~C~~G~Cg~C~ 50 (98)
-|+.+.+.|.- ....|..|.|+.|.
T Consensus 36 dL~~Le~~G~l~R~~~~GgaC~~g~C~~C~ 65 (78)
T 1xn7_A 36 MLQQLESMGKAVRIQEEPDGCLSGSCKSCP 65 (78)
T ss_dssp HHHHHHHHTSEEEECCCCCCCCCSSCCCCC
T ss_pred HHHHHHHCCCEEEecCcCCCCCCCCCCCCC
Confidence 46677777765 24578778899993
No 105
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=66.38 E-value=12 Score=21.36 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=23.7
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCC
Q 034300 2 AVYKIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVD 36 (98)
Q Consensus 2 ~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~ 36 (98)
..++|+|... |+...+++++..|+.+.-. ..|++
T Consensus 24 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip 61 (101)
T 2klc_A 24 KIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSH 61 (101)
T ss_dssp CCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCC
T ss_pred CeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 3567777555 7778899999999877432 34655
No 106
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=65.29 E-value=9.9 Score=21.55 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCc
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDL 37 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i 37 (98)
++|++...+|+.+.+++.+..|+.+.- .+.|++.
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~ 59 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM 59 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCh
Confidence 567777788988899999999987643 2356653
No 107
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.34 E-value=9.2 Score=21.53 Aligned_cols=25 Identities=4% Similarity=0.147 Sum_probs=19.2
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
+|+|...+|+...+++++..|+.+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~L 26 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKAL 26 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHH
Confidence 3555556788889999999998764
No 108
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=63.48 E-value=9.7 Score=21.10 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=23.7
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCc
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDL 37 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i 37 (98)
+|.+...+|+...+++++..|+.+.- ...|++.
T Consensus 11 ~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 47 (88)
T 1sif_A 11 QLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPP 47 (88)
T ss_dssp EEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCG
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCh
Confidence 46666678988899999999987643 2346553
No 109
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=63.40 E-value=8.3 Score=23.66 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=42.6
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCccCCCccccccccEEEEe---eeeeecCCCCCCChhhhhCCeEE
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDLPYSCRAGACSTCAGKLV---SGSVDQSDGSFLDDNQMEAGYLL 77 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i~~~C~~G~Cg~C~v~v~---~G~~~~~~~~~l~~~~~~~~~~L 77 (98)
+|++...+|+...+++++..|+.+.= ...|++... -++. .|.. ..+...|++-....+..+
T Consensus 4 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~-----------QrL~~~~~g~~-L~d~~tL~~y~i~~~~~l 71 (159)
T 3rt3_B 4 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQ-----------QRLAVHPSGVA-LQDRVPLASQGLGPGSTV 71 (159)
T ss_dssp EEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGG-----------EEEEEETTCCB-CCTTSCGGGGTCCTTCEE
T ss_pred EEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHH-----------EEEEEcCCCCC-CCCCCCHHHcCCCCCCEE
Confidence 56665568888899999999998852 335665432 1222 3432 234455555555566666
Q ss_pred eeeeE-ECCCeEEE
Q 034300 78 TCISY-PTSDCVIQ 90 (98)
Q Consensus 78 aCq~~-~~~d~~i~ 90 (98)
-...+ ..+.+.|.
T Consensus 72 ~l~~~~~~~~m~i~ 85 (159)
T 3rt3_B 72 LLVVDKSDEPLSIL 85 (159)
T ss_dssp EEEECCCCCCEEEE
T ss_pred EEEccCCCCcEEEE
Confidence 55554 23444443
No 110
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=63.20 E-value=16 Score=21.12 Aligned_cols=34 Identities=3% Similarity=0.026 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCCEEEEEeC-CCchHHHHHHH----cCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQ-EDQYILDAAEE----AGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~-~g~tlL~a~~~----~gi~i 37 (98)
.+.|+|..++|+ ..++++ +..|+.+.-.+ .|++.
T Consensus 7 ~M~irvrs~~G~-~~v~v~~~~~Tv~~LK~kI~~~~gip~ 45 (107)
T 1wf9_A 7 GTMLRVRSRDGL-ERVSVDGPHITVSQLKTLIQDQLQIPI 45 (107)
T ss_dssp CEEEEEECSSCE-EEEEECCTTSBHHHHHHHHHHHSCCCT
T ss_pred eEEEEEECCCCC-EEEEECCCCCcHHHHHHHHHHHhCcCc
Confidence 346888778886 479999 99998765433 46553
No 111
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=62.77 E-value=15 Score=22.04 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+++|+|... |+...+++++..|+.+.-
T Consensus 32 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK 58 (125)
T 1j8c_A 32 IIKVTVKTP-KEKEEFAVPENSSVQQFK 58 (125)
T ss_dssp CEEEEEECS-SCEEEEEECTTCCHHHHH
T ss_pred cEEEEEEeC-CeEEEEEECCCCcHHHHH
Confidence 567777555 777889999999987743
No 112
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.73 E-value=9.4 Score=21.46 Aligned_cols=27 Identities=11% Similarity=0.313 Sum_probs=18.8
Q ss_pred eEEEEEEcCCCCEE--EE-EeCCCchHHHH
Q 034300 3 VYKIKLIGPNGEEH--EF-EAQEDQYILDA 29 (98)
Q Consensus 3 ~~~v~i~~~~g~~~--~i-~~~~g~tlL~a 29 (98)
+++|+|....|+.. .+ ++++..|+.+.
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~l 39 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEI 39 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHH
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHH
Confidence 45677766666542 47 89999998764
No 113
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=62.49 E-value=12 Score=21.52 Aligned_cols=27 Identities=7% Similarity=0.245 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
++|+|...+|+.+.+++.+..|+.+.-
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK 50 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMK 50 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHH
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHH
Confidence 467775568888889999999987743
No 114
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=61.35 E-value=16 Score=20.39 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
+++|+|... |+.+.+++++..|+.+.
T Consensus 17 ~m~i~Vk~~-g~~~~~~v~~~~TV~~L 42 (96)
T 1wx8_A 17 IIRVSVKTP-QDCHEFFLAENSNVRRF 42 (96)
T ss_dssp EEEEEEECS-SSEEEEEEETTCCHHHH
T ss_pred cEEEEEEEC-CeEEEEEECCCCCHHHH
Confidence 467777555 88889999999998764
No 115
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=60.89 E-value=16 Score=19.88 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=20.4
Q ss_pred eEEEEEEcCCC-CEEEE-EeCCCchHHHHH
Q 034300 3 VYKIKLIGPNG-EEHEF-EAQEDQYILDAA 30 (98)
Q Consensus 3 ~~~v~i~~~~g-~~~~i-~~~~g~tlL~a~ 30 (98)
+++|+|...+| +.+.+ ++++..|+.+.-
T Consensus 7 ~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK 36 (89)
T 1wy8_A 7 GMWIQVRTIDGSKTCTIEDVSRKATIEELR 36 (89)
T ss_dssp CEEEEEEETTCSCEEEEEEECTTCBHHHHH
T ss_pred cEEEEEEECCCCceEEEEecCCCCCHHHHH
Confidence 35666655678 57889 599999987743
No 116
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=60.43 E-value=4.9 Score=23.37 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=17.9
Q ss_pred Cce-EEEEEEcCCCCEEEEEeCCC--chHHHHHH
Q 034300 1 MAV-YKIKLIGPNGEEHEFEAQED--QYILDAAE 31 (98)
Q Consensus 1 M~~-~~v~i~~~~g~~~~i~~~~g--~tlL~a~~ 31 (98)
|+. .+|+| ...|+.+++.++++ +.|..++.
T Consensus 1 Ms~~~~v~V-~I~G~~Y~l~~~~~~ee~l~~aA~ 33 (104)
T 1t3u_A 1 MSQSNTLTV-QILDKEYCINCPDDERANLESAAR 33 (104)
T ss_dssp -----CEEE-EETTEEEEECCCTTTHHHHHHHHH
T ss_pred CCCCCeEEE-EECCEEEEeeCCCCCHHHHHHHHH
Confidence 553 34555 45899899999876 45666654
No 117
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.63 E-value=12 Score=21.35 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=24.1
Q ss_pred eEEEEEEcCCCCEE-EEEeCCCchHHHHHH----HcCCCcc
Q 034300 3 VYKIKLIGPNGEEH-EFEAQEDQYILDAAE----EAGVDLP 38 (98)
Q Consensus 3 ~~~v~i~~~~g~~~-~i~~~~g~tlL~a~~----~~gi~i~ 38 (98)
+++|+|. ..|+.+ .+++++..|+.+.=. ..|++..
T Consensus 7 ~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~ 46 (96)
T 1wgg_A 7 GYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPA 46 (96)
T ss_dssp EEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTT
T ss_pred EEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 5667774 467778 599999999877432 3576643
No 118
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=57.97 E-value=23 Score=19.83 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=39.5
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCccCCCccccccccEEEEe-eeeeecCCCCCCChhhhhCCeEEee
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDLPYSCRAGACSTCAGKLV-SGSVDQSDGSFLDDNQMEAGYLLTC 79 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i~~~C~~G~Cg~C~v~v~-~G~~~~~~~~~l~~~~~~~~~~LaC 79 (98)
+|+|..++|+...+++++..|+.+.-. ..|++.. ..+++ .|.. ..+...|++-....+..+-.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~-----------~qrL~~~Gk~-L~D~~tL~~~gi~~g~~i~l 69 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD-----------QQRLIFAGKQ-LEDGRTLSDYNIQKESTLHL 69 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGG-----------GEEEEETTEE-CCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChh-----------hEEEEECCEE-CCCCCCHHHcCCCCCCEEEE
Confidence 455555688878899999999876432 3455421 11121 2322 23444565555566666666
Q ss_pred eeEECCC
Q 034300 80 ISYPTSD 86 (98)
Q Consensus 80 q~~~~~d 86 (98)
..+..+.
T Consensus 70 ~~~~~gG 76 (98)
T 1yx5_B 70 VLRLRGG 76 (98)
T ss_dssp EECCCCC
T ss_pred EEeCCCC
Confidence 5555543
No 119
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=57.66 E-value=17 Score=19.20 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCEE-EEE-eCCCchHHHHHH----HcCCCc
Q 034300 4 YKIKLIGPNGEEH-EFE-AQEDQYILDAAE----EAGVDL 37 (98)
Q Consensus 4 ~~v~i~~~~g~~~-~i~-~~~g~tlL~a~~----~~gi~i 37 (98)
++|+|...+|+.. .++ +++..|+.+.-. ..|++.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~ 42 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEP 42 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcCh
Confidence 3566655678774 888 999999876432 346553
No 120
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.36 E-value=5.9 Score=21.44 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=19.9
Q ss_pred EEEEeCCCchHHHHHHHcCCCcc
Q 034300 16 HEFEAQEDQYILDAAEEAGVDLP 38 (98)
Q Consensus 16 ~~i~~~~g~tlL~a~~~~gi~i~ 38 (98)
..+.+.+|+||...+++.|+.+.
T Consensus 16 ~~y~V~~GDTL~~IA~~~~~~~~ 38 (77)
T 2djp_A 16 LEHQLEPGDTLAGLALKYGVTME 38 (77)
T ss_dssp EEECCCTTCCHHHHHHHHTCCHH
T ss_pred EEEEECCCCcHHHHHHHHCcCHH
Confidence 46889999999999999988754
No 121
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=57.12 E-value=6.5 Score=20.67 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=18.0
Q ss_pred CCCEEEEEeCCCchHHHHHHHcCCC
Q 034300 12 NGEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 12 ~g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
||+ ++++ ++.|+.+.+...+++
T Consensus 5 Ng~--~~~~-~~~tv~~ll~~l~~~ 26 (64)
T 2cu3_A 5 NGE--PRPL-EGKTLKEVLEEMGVE 26 (64)
T ss_dssp TTE--EECC-TTCCHHHHHHHHTBC
T ss_pred CCE--EEEc-CCCcHHHHHHHcCCC
Confidence 786 6677 889999999988765
No 122
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=57.05 E-value=28 Score=20.68 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=39.8
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCccCCCccccccccEEEEe-eeeeecCCCCCCChhhhhCCeEEee
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDLPYSCRAGACSTCAGKLV-SGSVDQSDGSFLDDNQMEAGYLLTC 79 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i~~~C~~G~Cg~C~v~v~-~G~~~~~~~~~l~~~~~~~~~~LaC 79 (98)
+|+|...+|+...+++++..|+.+.-. ..|++... .++. .|.. ..+...|++-....+..+-.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-----------q~L~~~g~~-L~d~~tL~~~~i~~~~~l~l 69 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ-----------QRLIFAGKQ-LEDGRTLSDYNIQKESTLHL 69 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGG-----------EEEEETTEE-CCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHH-----------eEEEECCeE-CcCcccHHHhccCCCCeeEE
Confidence 355545678888999999999987543 35665321 1111 2222 22334455545555666555
Q ss_pred eeEECCCeEE
Q 034300 80 ISYPTSDCVI 89 (98)
Q Consensus 80 q~~~~~d~~i 89 (98)
..+..+.+.|
T Consensus 70 ~~~~~~~~~i 79 (152)
T 3b08_A 70 VLRLRGGMQI 79 (152)
T ss_dssp EECCTTCEEE
T ss_pred Eeecccccce
Confidence 5544444433
No 123
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=57.04 E-value=4.9 Score=27.09 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=25.9
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGV 35 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi 35 (98)
|..-+|++. ..|...++.++.|++|-+.+.++|+
T Consensus 1 ~~~~~v~v~-~~g~~~~~~i~~~eRLsdll~ra~~ 34 (236)
T 3p42_A 1 MAQGMVTIY-LPGEQQTLSVGPVENVAQLVTQPQL 34 (236)
T ss_dssp --CEEEEEE-CTTSSCEEEEEEESBHHHHHTCTTT
T ss_pred CCceeEEEE-ECCCceeEeeCCCCcHHHHHhhccC
Confidence 666677774 3555578999999999999999984
No 124
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=55.89 E-value=9.3 Score=25.09 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=19.1
Q ss_pred EcCCCCEEEEEeCCCchHHHHHHHcC
Q 034300 9 IGPNGEEHEFEAQEDQYILDAAEEAG 34 (98)
Q Consensus 9 ~~~~g~~~~i~~~~g~tlL~a~~~~g 34 (98)
..|+|+ .++++.|.|+++.+.+.+
T Consensus 5 ~~p~G~--~~~~~~g~T~~dia~~i~ 28 (224)
T 1tke_A 5 TLPDGS--QRHYDHAVSPMDVALDIG 28 (224)
T ss_dssp ECTTSC--EEECSSCBCHHHHHHHHC
T ss_pred EeCCCC--EEEecCCCCHHHHHHHHh
Confidence 347887 678899999999987753
No 125
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=54.02 E-value=28 Score=19.75 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=21.2
Q ss_pred EEEEEEcCCC----CEEEEEeCCCchHHHHHH----HcCCCc
Q 034300 4 YKIKLIGPNG----EEHEFEAQEDQYILDAAE----EAGVDL 37 (98)
Q Consensus 4 ~~v~i~~~~g----~~~~i~~~~g~tlL~a~~----~~gi~i 37 (98)
++|+|..+++ +.+.+++++..|+.+.-. ..|++.
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~ 49 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPA 49 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCG
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcCh
Confidence 4455543333 577899999999876432 346653
No 126
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.51 E-value=21 Score=21.62 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=25.6
Q ss_pred EEEEEE-cCCCCEEEEEeCCCchHHHHH----HHcCCCccCCC
Q 034300 4 YKIKLI-GPNGEEHEFEAQEDQYILDAA----EEAGVDLPYSC 41 (98)
Q Consensus 4 ~~v~i~-~~~g~~~~i~~~~g~tlL~a~----~~~gi~i~~~C 41 (98)
.+|+|. .++++.++++++++.|+.+.= ...+++....|
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qr 58 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQ 58 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEE
Confidence 455543 677888899999999988742 33566655444
No 127
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=52.69 E-value=28 Score=19.65 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=24.8
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i 37 (98)
.++|++...+|+...|.+.+..+|-... .+.|++.
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~ 43 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 43 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 4677787788988899999998754333 3466654
No 128
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=51.51 E-value=21 Score=20.79 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=35.5
Q ss_pred EEEEEEcCC----CCEEEEEeCCCchHHHH----HHHcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCe
Q 034300 4 YKIKLIGPN----GEEHEFEAQEDQYILDA----AEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGY 75 (98)
Q Consensus 4 ~~v~i~~~~----g~~~~i~~~~g~tlL~a----~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~ 75 (98)
.+++|+.++ ++..+++++++.|+.+. +.+.|++..... -|-+|.+- .+...|++..+.++.
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQr----------LI~~GKiL-~D~~TL~~y~I~~gs 84 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIK----------IVINKKQL-QLGKTLEEQGVAHNV 84 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCE----------EEETTEEC-CTTSBHHHHTCCSSE
T ss_pred EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeE----------EEeCCeEC-CCCCcHHHcCCCCCC
Confidence 345555666 66788999999998763 234676544321 11234432 233455555555665
Q ss_pred EE
Q 034300 76 LL 77 (98)
Q Consensus 76 ~L 77 (98)
.+
T Consensus 85 ti 86 (100)
T 1wju_A 85 KA 86 (100)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 129
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=51.01 E-value=31 Score=19.34 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
.++|+|...+| ..++++++..|+.+.
T Consensus 15 ~~~I~Vk~~~~-~~~l~v~~~~TV~~L 40 (94)
T 2kan_A 15 KIHVTVKFPSK-QFTVEVDRTETVSSL 40 (94)
T ss_dssp CEEEEEECSSC-EEEEEECTTCBHHHH
T ss_pred CEEEEEEcCCc-EEEEEECCCCcHHHH
Confidence 35677766666 688999999998774
No 130
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.13 E-value=14 Score=21.44 Aligned_cols=35 Identities=3% Similarity=0.108 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCcc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDLP 38 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i~ 38 (98)
|+.+.+ ...|+.+.++++++.|+.+.=. ..||+..
T Consensus 9 m~~~~v-k~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~ 47 (100)
T 2dzm_A 9 MLDFRV-EYRDRNVDVVLEDTCTVGEIKQILENELQIPVS 47 (100)
T ss_dssp EEEEEE-ECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTT
T ss_pred eEEEEE-EeCCeEEEEEECCCCcHHHHHHHHHHHHCCChh
Confidence 344444 3478888999999999865432 3577643
No 131
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=48.27 E-value=17 Score=20.25 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCEEEE-EeCCCchHHHHHH----HcCCCc
Q 034300 4 YKIKLIGPNGEEHEF-EAQEDQYILDAAE----EAGVDL 37 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i-~~~~g~tlL~a~~----~~gi~i 37 (98)
++|+|. ..|+.+.+ ++++..|+.+.=. ..|++.
T Consensus 8 m~i~Vk-~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~ 45 (90)
T 1v5t_A 8 LPIIVK-WGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLP 45 (90)
T ss_dssp CCEEEE-ETTEEEEECSCCSSSBHHHHHHHHHHHTCCCT
T ss_pred EEEEEE-ECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCH
Confidence 345553 36777788 8899999877432 356653
No 132
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=48.13 E-value=32 Score=20.88 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=24.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCc
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDL 37 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i 37 (98)
+.|++...+|+...+++++..|+.+.=. ..|++.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 119 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 119 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCH
Confidence 4566766788888999999999987432 346654
No 133
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=53.74 E-value=3.8 Score=20.08 Aligned_cols=17 Identities=35% Similarity=0.958 Sum_probs=13.4
Q ss_pred HcCCCccCCCcccccccc
Q 034300 32 EAGVDLPYSCRAGACSTC 49 (98)
Q Consensus 32 ~~gi~i~~~C~~G~Cg~C 49 (98)
++|..+.+.|.+ +||.|
T Consensus 24 ~ng~~~r~~C~k-TCG~C 40 (40)
T 2lg4_A 24 RNGVKLRANCKK-TCGLC 40 (40)
Confidence 678888999975 68876
No 134
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=47.29 E-value=32 Score=22.29 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=40.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCccCCCccccccccEEEEeeeeeecCCCCCCChhhhhCCeEEee
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTC 79 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~~~~LaC 79 (98)
++|+|...+|+...+++++..|+.+.=. ..|++....- .+..|.. +.+...|++-.+.++..|-.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~Qr----------Li~~Gk~-L~D~~tL~dygI~~gstI~L 174 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR----------LIFAGKQ-LEDGRTLSDYNIQKESTLHL 174 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCC----------EEETTEE-CCTTCBGGGGTCCTTCEEEE
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEE----------EEECCEE-CCCCCCHHHCCCCCCCEEEE
Confidence 4577766789888999999999987432 2466543211 1123322 22334555544555555555
Q ss_pred eeEECC
Q 034300 80 ISYPTS 85 (98)
Q Consensus 80 q~~~~~ 85 (98)
..+..+
T Consensus 175 vlrlrG 180 (189)
T 3q3f_A 175 VLRLRG 180 (189)
T ss_dssp CCCCCC
T ss_pred EEEcCC
Confidence 544443
No 135
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=46.29 E-value=7.2 Score=21.65 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAE 31 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~ 31 (98)
+.++|..++|. ..|++++..|+-+...
T Consensus 5 m~lRvrs~~G~-~Ri~v~~~~t~~~L~~ 31 (80)
T 2pjh_A 5 IIIRVQSPDGV-KRITATKRETAATFLK 31 (80)
T ss_dssp CCCEEECSSEE-EECCCCSSCCHHHHHH
T ss_pred EEEEEECCCCC-EEEEcCCcChHHHHHH
Confidence 56778778885 6788999888766554
No 136
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.86 E-value=9.7 Score=25.30 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=15.9
Q ss_pred chHHHHHHHcCCCccCCCc
Q 034300 24 QYILDAAEEAGVDLPYSCR 42 (98)
Q Consensus 24 ~tlL~a~~~~gi~i~~~C~ 42 (98)
.-++++|+++|+.+|++=.
T Consensus 118 ~Ala~gAre~GL~iPhs~~ 136 (203)
T 3j21_O 118 FAVLKGAVDAGLNVPHSPE 136 (203)
T ss_dssp HHHHHHHHHHTCCCCCCSS
T ss_pred hhhhhhcccCCeecccCCc
Confidence 3589999999999999744
No 137
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=45.60 E-value=28 Score=19.40 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=16.7
Q ss_pred CCCchHHHHHHHcCCCccCCCccc
Q 034300 21 QEDQYILDAAEEAGVDLPYSCRAG 44 (98)
Q Consensus 21 ~~g~tlL~a~~~~gi~i~~~C~~G 44 (98)
+.|+++..++.+.|+. ...=+.|
T Consensus 19 pqG~av~~al~~LG~~-v~~VR~g 41 (84)
T 2dgb_A 19 PQGRAVEGVLKDLGHP-VEEVRVG 41 (84)
T ss_dssp HHHHHHHHHHHHTTCC-CSEEEEE
T ss_pred hHHHHHHHHHHHCCCC-hhhEEEE
Confidence 5578999999999988 4444443
No 138
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=45.03 E-value=41 Score=19.05 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=20.4
Q ss_pred ceEEEEEEcCCCC--EEEEEeCCCchHHHHH
Q 034300 2 AVYKIKLIGPNGE--EHEFEAQEDQYILDAA 30 (98)
Q Consensus 2 ~~~~v~i~~~~g~--~~~i~~~~g~tlL~a~ 30 (98)
..++|.|...+++ ..++.+++..|+.+.=
T Consensus 14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK 44 (95)
T 2kjr_A 14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLK 44 (95)
T ss_dssp CEEEEEEEESSCSCEEEEEEEETTCBHHHHH
T ss_pred CeEEEEEEECCCCceEEEEEeCccCHHHHHH
Confidence 4567777555553 5788999999987643
No 139
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.91 E-value=42 Score=19.05 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=20.6
Q ss_pred cCCCCEE-EEEeCCCchHHHHHHHcCC
Q 034300 10 GPNGEEH-EFEAQEDQYILDAAEEAGV 35 (98)
Q Consensus 10 ~~~g~~~-~i~~~~g~tlL~a~~~~gi 35 (98)
.++|..+ -+...+|.+.||.|.+-|+
T Consensus 59 ~~~~~KKA~V~L~~~~~a~dva~kigi 85 (86)
T 3j21_T 59 TPRGEKKAYVKLKPEYSASEVAARLGL 85 (86)
T ss_dssp CTTSCEEEEEEECTTSCHHHHHHHSSC
T ss_pred cCCCceEEEEEcCCCCcHHHHHHhhcc
Confidence 5666543 4689999999999998886
No 140
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=44.18 E-value=34 Score=19.41 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+++|+|...+|+ ..+++++..|+.+.-
T Consensus 22 ~m~I~Vk~~~g~-~~l~v~~~~TV~~LK 48 (100)
T 1yqb_A 22 LIKVTVKTPKDK-EDFSVTDTCTIQQLK 48 (100)
T ss_dssp EEEEEEECSSCE-EEEEEETTCBHHHHH
T ss_pred eEEEEEEcCCCc-EEEEECCCCcHHHHH
Confidence 467777666775 689999999987643
No 141
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=43.93 E-value=39 Score=20.51 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCEE-EEEeCCCchHHHHH
Q 034300 4 YKIKLIGPNGEEH-EFEAQEDQYILDAA 30 (98)
Q Consensus 4 ~~v~i~~~~g~~~-~i~~~~g~tlL~a~ 30 (98)
+.|+|...+|+.. .+++++.+|+.+.=
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK 44 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALK 44 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHH
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHH
Confidence 5677777899777 68999999987643
No 142
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=43.84 E-value=31 Score=19.88 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=20.5
Q ss_pred eEEEEEEcC---CCCEEEEEeCC-CchHHHH
Q 034300 3 VYKIKLIGP---NGEEHEFEAQE-DQYILDA 29 (98)
Q Consensus 3 ~~~v~i~~~---~g~~~~i~~~~-g~tlL~a 29 (98)
.++|+|..+ +|+...+++++ ..|+.+.
T Consensus 27 ~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~L 57 (111)
T 1we6_A 27 PATIRVSKPNENDGQFMEITVQSLSENVGSL 57 (111)
T ss_dssp CEEEEECCTTCSSSCCEEEEESCSSSBHHHH
T ss_pred cEEEEEEecccCCCcEEEEEecCCCCcHHHH
Confidence 356777556 77778899998 9998764
No 143
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=43.62 E-value=21 Score=22.43 Aligned_cols=21 Identities=5% Similarity=0.194 Sum_probs=17.5
Q ss_pred EEEEeCCCchHHHHHHHcCCC
Q 034300 16 HEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 16 ~~i~~~~g~tlL~a~~~~gi~ 36 (98)
.++++++|+||.+.|++.++.
T Consensus 3 ~~y~V~~GdtL~~IA~~f~~g 23 (165)
T 4a1k_A 3 LTYQVKQGDTLNSIAADFRIS 23 (165)
T ss_dssp EEEECCTTCCHHHHHHHTTCC
T ss_pred EEEEECCCCCHHHHHHHhCCC
Confidence 367889999999999887765
No 144
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.48 E-value=16 Score=21.04 Aligned_cols=28 Identities=7% Similarity=-0.015 Sum_probs=18.2
Q ss_pred ceEEEEEEcCCC---CEEEEEeCC---------CchHHHH
Q 034300 2 AVYKIKLIGPNG---EEHEFEAQE---------DQYILDA 29 (98)
Q Consensus 2 ~~~~v~i~~~~g---~~~~i~~~~---------g~tlL~a 29 (98)
..++|+|...++ +.+.+++++ +.|+.+.
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~L 50 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFL 50 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHH
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHH
Confidence 345677766677 567888554 4888764
No 145
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=43.45 E-value=27 Score=21.95 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=23.5
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCc
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDL 37 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i 37 (98)
+|+|...+|+...+++++..|+.+.=. ..|++.
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~ 38 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 38 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCT
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCH
Confidence 355555788888999999999887432 356554
No 146
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=42.32 E-value=11 Score=24.48 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=18.0
Q ss_pred hHHHHHHHcCC-C----ccCCCccc----ccccc
Q 034300 25 YILDAAEEAGV-D----LPYSCRAG----ACSTC 49 (98)
Q Consensus 25 tlL~a~~~~gi-~----i~~~C~~G----~Cg~C 49 (98)
-|.+.+.+.|+ + ..++|..| .||.|
T Consensus 168 ei~~~a~~~gl~~~~~~~t~sC~~~~~~~~CG~C 201 (232)
T 2pg3_A 168 ETWALADYYQQLDTVRYHTLTCYNGIKGDGCGQC 201 (232)
T ss_dssp HHHHHHHHTTCHHHHHHHCCCCTTSCCTTTTSCS
T ss_pred HHHHHHHHcCCCcccccccCCCcCCCCCCcCCcC
Confidence 48888899998 4 57889733 46655
No 147
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=41.94 E-value=36 Score=19.32 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+++|+|...+|+ +.+++.+..|+.+.-
T Consensus 17 ~m~I~Vk~~~g~-~~l~v~~~~TV~~LK 43 (106)
T 1wx7_A 17 LIKVTVKTPKDK-EDFSVTDTCTIQQLK 43 (106)
T ss_dssp EEEEEEECSSCE-EEEEEETTCCHHHHH
T ss_pred eEEEEEEeCCCc-EEEEECCCCcHHHHH
Confidence 456777666665 689999999987743
No 148
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=41.70 E-value=47 Score=18.75 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=24.8
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i 37 (98)
.++|++...+|+...|.+++..+|-... .+.|++.
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~ 45 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 45 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCc
Confidence 4577887778988899999998854433 3456653
No 149
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=40.53 E-value=45 Score=18.24 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=18.9
Q ss_pred eEEEEEEcCCCCEEEEEeCCC-----chHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQED-----QYILDA 29 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g-----~tlL~a 29 (98)
+++|+|.. .|+.+.+++++. .|+.+.
T Consensus 7 ~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~L 37 (92)
T 1wxv_A 7 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDL 37 (92)
T ss_dssp SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHH
T ss_pred eEEEEEEE-CCEEEEEEECCCcCcccCcHHHH
Confidence 46777754 577788999985 777664
No 150
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=46.59 E-value=5.9 Score=21.03 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=17.5
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHH
Q 034300 6 IKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 6 v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
|++...+|+...+++++..|+.+.
T Consensus 3 i~Vk~~~g~~~~~~v~~~~tV~~l 26 (76)
T 3b1l_X 3 VFVRFNSSYGFPVEVDSDTSILQL 26 (76)
Confidence 445456787778899999888764
No 151
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=38.17 E-value=16 Score=23.93 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.5
Q ss_pred chHHHHHHHcCCCccCCC
Q 034300 24 QYILDAAEEAGVDLPYSC 41 (98)
Q Consensus 24 ~tlL~a~~~~gi~i~~~C 41 (98)
.-++++|+++|+.+|++=
T Consensus 117 ~Ala~gAre~GL~fph~~ 134 (187)
T 1vq8_N 117 FAIQEGAIDAGLDIPHND 134 (187)
T ss_dssp HHHHHHHHHTTCBCCCCG
T ss_pred HHHHHHhhcCCEeccCCC
Confidence 468999999999999874
No 152
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=37.66 E-value=42 Score=24.57 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.2
Q ss_pred EEEEEeCCCchHHHHHHHc
Q 034300 15 EHEFEAQEDQYILDAAEEA 33 (98)
Q Consensus 15 ~~~i~~~~g~tlL~a~~~~ 33 (98)
.++|++++|.+++++++.+
T Consensus 331 ~~~Vtv~~gssll~vLk~A 349 (414)
T 2bb6_A 331 RHSVSVPAGSSLEDILKNA 349 (414)
T ss_dssp EEEEEEETTCCHHHHHHHH
T ss_pred ceEEEecCCCCHHHHHHHH
Confidence 4679999999999999764
No 153
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=36.69 E-value=6.2 Score=30.16 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=20.5
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAG 34 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~g 34 (98)
|.+++|++ |||+ ..+++.|.|+++.+...+
T Consensus 1 ~~~~~i~~--~dg~--~~~~~~g~t~~~ia~~~~ 30 (645)
T 1nyr_A 1 MEQINIQF--PDGN--KKAFDKGTTTEDIAQSIS 30 (645)
T ss_dssp ---CBBCC--TTSC--CCBCCTTCCHHHHHHTTC
T ss_pred CCceEEEe--CCCC--EEEecCCCCHHHHHHHhh
Confidence 55666665 6886 467889999999987653
No 154
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=36.59 E-value=58 Score=18.33 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=18.7
Q ss_pred CceEEEEEEc-----CCC-CEEEEEeC--CCchHHHHHH
Q 034300 1 MAVYKIKLIG-----PNG-EEHEFEAQ--EDQYILDAAE 31 (98)
Q Consensus 1 M~~~~v~i~~-----~~g-~~~~i~~~--~g~tlL~a~~ 31 (98)
||+++|.++. .+| ++.+++++ ++.|+-+.+.
T Consensus 1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~ 39 (99)
T 2qjl_A 1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLID 39 (99)
T ss_dssp CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHH
T ss_pred CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHH
Confidence 7778888754 123 33456666 6777665443
No 155
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=36.56 E-value=47 Score=18.40 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
++|++.. |+...+++++..|+.+.-
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK 44 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIK 44 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHH
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHH
Confidence 4676643 788889999999987743
No 156
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=36.32 E-value=49 Score=17.43 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHH---HHH-HHcCCCc
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYIL---DAA-EEAGVDL 37 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL---~a~-~~~gi~i 37 (98)
++|++...+|+...+.+.+..+|- ++- .+.|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~ 39 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 39 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 467776778988899999998744 333 3457654
No 157
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=36.27 E-value=32 Score=21.69 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=18.6
Q ss_pred EEEEeCCCchHHHHHHHcCCCc
Q 034300 16 HEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 16 ~~i~~~~g~tlL~a~~~~gi~i 37 (98)
..+.|.+|+||-..+.+.|+.+
T Consensus 63 ~~y~V~~GDTL~~IA~~~~~~~ 84 (167)
T 2l9y_A 63 ATVTVQQGDTLRDIGRRFDCDF 84 (167)
T ss_dssp EEEEECTTCCHHHHHHHTTCCH
T ss_pred ceEEECCCCcHHHHHHHcCCCH
Confidence 4688999999999999887664
No 158
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=34.32 E-value=34 Score=24.93 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.7
Q ss_pred EEEEEeCCCchHHHHHHHc
Q 034300 15 EHEFEAQEDQYILDAAEEA 33 (98)
Q Consensus 15 ~~~i~~~~g~tlL~a~~~~ 33 (98)
.+.|++++|.+++++++++
T Consensus 314 ~~~Vtv~~gssll~vLk~a 332 (399)
T 2pmv_A 314 TINVSVKSGSVLLVVLEEA 332 (399)
T ss_dssp CEEEESSSCSCHHHHHHHH
T ss_pred ceEEEecCCCCHHHHHHHH
Confidence 3689999999999999875
No 159
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=34.24 E-value=44 Score=19.68 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=23.4
Q ss_pred Cc-eEEEEEEcCCCC-EEEEEeCCCchHHHHHH----HcCCC
Q 034300 1 MA-VYKIKLIGPNGE-EHEFEAQEDQYILDAAE----EAGVD 36 (98)
Q Consensus 1 M~-~~~v~i~~~~g~-~~~i~~~~g~tlL~a~~----~~gi~ 36 (98)
|+ +++|+|...++. ..++.+++..|+.+.=. ..|++
T Consensus 3 m~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip 44 (122)
T 1t0y_A 3 MTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTT 44 (122)
T ss_dssp CCCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCC
T ss_pred CCCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCC
Confidence 54 677877544331 47899999999876432 34655
No 160
>2y5p_A Internalin B, INLB; protein binding, virulence factor, pathogenicity factor, BET fold; 1.30A {Listeria monocytogenes}
Probab=34.08 E-value=28 Score=18.83 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=15.9
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYI 26 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tl 26 (98)
.++|+| ..||......++.|..+
T Consensus 4 ~ytVtF-d~nGg~~~~~v~~g~~i 26 (74)
T 2y5p_A 4 VYTVSY-DVDGTVIKTKVEAGTRI 26 (74)
T ss_dssp EEEEEE-EETTEEEEEEEETTSCC
T ss_pred EEEEEE-ECCCCEeeEEEcCCCEE
Confidence 688998 67776555666666554
No 161
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=33.63 E-value=11 Score=21.58 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCc
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDL 37 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i 37 (98)
++|+|.. +|+...+++++..|+.+.=. ..|++.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 65 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPV 65 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCS
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcCh
Confidence 4577744 77777889999999887432 346654
No 162
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=33.14 E-value=31 Score=24.39 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=20.1
Q ss_pred EEEEeCCCchHHHHHHHcCCCcc
Q 034300 16 HEFEAQEDQYILDAAEEAGVDLP 38 (98)
Q Consensus 16 ~~i~~~~g~tlL~a~~~~gi~i~ 38 (98)
.++.+.+|+||...|.+.|++..
T Consensus 8 ~~~~Vk~GDTL~~Ia~r~gvs~~ 30 (361)
T 2gu1_A 8 IHYMVKVGDTLSGIFAQLGVPYS 30 (361)
T ss_dssp EEEECCTTCCHHHHHHHTTCCHH
T ss_pred eEEEECCCCcHHHHHHHcCCCHH
Confidence 47889999999999999998753
No 163
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=32.54 E-value=9.4 Score=22.87 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHH
Q 034300 6 IKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 6 v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
|+|...+|+...+++++..|+.+.
T Consensus 3 I~Vk~~~G~~~~l~v~~~~TV~~L 26 (128)
T 3u5e_m 3 IFVKTLTGKTITLEVESSDTIDNV 26 (128)
T ss_dssp ------------------------
T ss_pred EEEEeCCCCEEEEEeCCCCCHHHH
Confidence 445456787788899999888774
No 164
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=32.47 E-value=25 Score=25.25 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
++|+|...+|+.+.|++.+..|+.+.
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~L 33 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVL 33 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHH
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHH
Confidence 45666566788888999999998774
No 165
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=31.58 E-value=22 Score=22.53 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=18.4
Q ss_pred chHHHHHHHcCCC-----ccCCCccc----cccccE
Q 034300 24 QYILDAAEEAGVD-----LPYSCRAG----ACSTCA 50 (98)
Q Consensus 24 ~tlL~a~~~~gi~-----i~~~C~~G----~Cg~C~ 50 (98)
.-|.+.+.+.|++ ..++|..| -||.|.
T Consensus 164 ~ei~~~a~~~glp~~~~~~t~sc~~~~~~~~CG~C~ 199 (219)
T 3bl5_A 164 AETWKLADELGALDFVKNNTLTCYNGIIADGCGECP 199 (219)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCSTTSCCSSCCSCSH
T ss_pred HHHHHHHHHcCCCccchhheeeccCCCCCCCCCCCH
Confidence 3578888999982 46788732 377663
No 166
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=31.44 E-value=12 Score=21.68 Aligned_cols=32 Identities=9% Similarity=0.003 Sum_probs=20.6
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
|+..+|.+....| +.=|.|+++..++.+.|+.
T Consensus 15 ~~~~~V~V~lKpg----VlDPqG~aV~~aL~~LG~~ 46 (94)
T 1vq3_A 15 LFKFAIDVQYRSN----VRDPRGETIERVLREEKGL 46 (94)
T ss_dssp EEEEEEEEEECTT----SCCHHHHHHHHHHHHTTCC
T ss_pred eEEEEEEEEECCC----CcCcHHHHHHHHHHHcCCC
Confidence 3444455433333 3336689999999999987
No 167
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=31.29 E-value=64 Score=17.51 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=16.7
Q ss_pred cCCCCEEEEEeCCCchHHHHH
Q 034300 10 GPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 10 ~~~g~~~~i~~~~g~tlL~a~ 30 (98)
..+|+...+++++..|+.+.-
T Consensus 18 ~~~g~~~~l~v~~~~TV~~LK 38 (85)
T 2kd0_A 18 KFGGKSIPLSVSPDCTVKDLK 38 (85)
T ss_dssp EETTEEEEEEECTTSBHHHHH
T ss_pred EECCEEEEEEECCCCcHHHHH
Confidence 457888889999999987743
No 168
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=31.01 E-value=71 Score=18.39 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=13.9
Q ss_pred CCEEEEEeCCCchHHHH
Q 034300 13 GEEHEFEAQEDQYILDA 29 (98)
Q Consensus 13 g~~~~i~~~~g~tlL~a 29 (98)
|+...+++++..|+.+.
T Consensus 45 G~~~~l~v~~~~TV~~L 61 (115)
T 1we7_A 45 GQGLVFTLPLTDQVSVI 61 (115)
T ss_dssp SEEEEEEECSCSBTHHH
T ss_pred CeEEEEEECCCCCHHHH
Confidence 56778999999998774
No 169
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=30.06 E-value=43 Score=19.69 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=21.1
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 2 AVYKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 2 ~~~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
+..+|.+..|.|-+..+. ++|.++...
T Consensus 6 P~~~ve~l~PkG~~vSip-~pGi~lfaf 32 (106)
T 3aqy_A 6 PSAKLEAIYPKGLRVSIP-DDGFSLFAF 32 (106)
T ss_dssp CCCEEEEESSSCEEEEEE-CSSCSEEEE
T ss_pred CCcEEEEeCCCcEEEEEe-CCCcEEEEE
Confidence 456778888999877888 888888753
No 170
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=30.04 E-value=58 Score=19.95 Aligned_cols=41 Identities=10% Similarity=-0.003 Sum_probs=26.1
Q ss_pred CCEEEEEeCCCchHHHHHHH----cCCCccCCCccccccccEEEE
Q 034300 13 GEEHEFEAQEDQYILDAAEE----AGVDLPYSCRAGACSTCAGKL 53 (98)
Q Consensus 13 g~~~~i~~~~g~tlL~a~~~----~gi~i~~~C~~G~Cg~C~v~v 53 (98)
|+.+.+..++|+.|++++.+ +||.--+-=+.|......+..
T Consensus 12 g~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~ 56 (147)
T 3hwu_A 12 PTGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGF 56 (147)
T ss_dssp TTEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEe
Confidence 56678999999988887754 677744332255554444443
No 171
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=29.14 E-value=68 Score=19.50 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=24.3
Q ss_pred CCEEEEEeCCCchHHHHHHH----cCCCccCCCccccccccEEE
Q 034300 13 GEEHEFEAQEDQYILDAAEE----AGVDLPYSCRAGACSTCAGK 52 (98)
Q Consensus 13 g~~~~i~~~~g~tlL~a~~~----~gi~i~~~C~~G~Cg~C~v~ 52 (98)
|+.+.+.+++|+.|++++.+ +|+..-.-=+.|.......+
T Consensus 9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~ 52 (146)
T 2h6l_A 9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIG 52 (146)
T ss_dssp CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEE
Confidence 55678899999988887754 56653333124444444333
No 172
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.04 E-value=27 Score=24.54 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=15.0
Q ss_pred hHHHHHHHcCCCccCCC
Q 034300 25 YILDAAEEAGVDLPYSC 41 (98)
Q Consensus 25 tlL~a~~~~gi~i~~~C 41 (98)
-++++|.++|+.+||+=
T Consensus 161 a~akGArDgGL~~Phs~ 177 (297)
T 2zkr_n 161 GALKGAVDGGLSIPHST 177 (297)
T ss_dssp HHHHHHHHTTCBCCCCG
T ss_pred HHHHHHHhcCcccCCCC
Confidence 58889999999999984
No 173
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=28.53 E-value=89 Score=21.82 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=24.7
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i 37 (98)
+++|+|...+|+...+++++..|+.+.= ...|++.
T Consensus 233 ~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~ 271 (307)
T 3ai5_A 233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 271 (307)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 3567776668888899999999987743 2346553
No 174
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=27.46 E-value=87 Score=21.84 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=23.2
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHc
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEA 33 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~ 33 (98)
|+...++|..+ +..+++.+.+..|+-||++.-
T Consensus 1 ~~~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i 32 (371)
T 3ivf_A 1 MVALSLKISIG-NVVKTMQFEPSTMVYDACRMI 32 (371)
T ss_dssp -CCEEEEEEET-TEEEEEEECTTCBHHHHHHHH
T ss_pred CccEEEEEEec-ceeEEEEECCCCCHHHHHHHH
Confidence 55445555334 667899999999999999763
No 175
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=26.98 E-value=24 Score=19.60 Aligned_cols=40 Identities=15% Similarity=0.018 Sum_probs=25.3
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCCccCCCccc
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAG 44 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~i~~~C~~G 44 (98)
|+.++|.+....| +.=+.|+++..++.+.|+.-...=+.|
T Consensus 1 ~~~~~V~V~lK~g----vlDpqG~av~~al~~lG~~~v~~Vr~g 40 (83)
T 2yx5_A 1 MYKATVIIKLKKG----VLNPEGRTIQRALNFLGFNNVKEVQTY 40 (83)
T ss_dssp CEEEEEEEEECTT----CCCHHHHHHHHHHHHTTCTTCCCCCCC
T ss_pred CeEEEEEEEECCC----CcCcHHHHHHHHHHHcCCCChhhEEEE
Confidence 6666666643333 333668899999999998533333443
No 176
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=26.70 E-value=61 Score=17.10 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=19.5
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCC
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGV 35 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi 35 (98)
+++|+++..--. .++++ ++.|+-+.+..-+.
T Consensus 2 ~v~V~~fa~l~~-~~~e~-~~~tv~~ll~~L~~ 32 (74)
T 3rpf_C 2 MVEVRFFGPIKE-ENFFI-KANDLKELRAILQE 32 (74)
T ss_dssp EEEEEECTTCCC-CCEEE-ECSSHHHHHHHHHT
T ss_pred EEEEEEEeecce-eEEee-CCCcHHHHHHHHHH
Confidence 577887543332 35777 77888877665443
No 177
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=26.29 E-value=1e+02 Score=21.13 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
+..|+|+..||..+.+.|++++|.-|++
T Consensus 31 k~ivkv~~~D~ss~~l~V~~~~TA~dv~ 58 (281)
T 4gmv_A 31 KLVIRVHMSDDSSKTMMVDERQTVRQVL 58 (281)
T ss_dssp EEEEEEEETTSCEEEEEEETTCBHHHHH
T ss_pred cEEEEEEecCCCEEEEEECCCCcHHHHH
Confidence 3557777789988899999999987776
No 178
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=25.54 E-value=41 Score=18.34 Aligned_cols=30 Identities=10% Similarity=0.239 Sum_probs=19.7
Q ss_pred EEEEcCCCCEEEEE-eCCCchHHHHHH----HcCCC
Q 034300 6 IKLIGPNGEEHEFE-AQEDQYILDAAE----EAGVD 36 (98)
Q Consensus 6 v~i~~~~g~~~~i~-~~~g~tlL~a~~----~~gi~ 36 (98)
|+|..++|+ ..+. +++..|+.+... +.|++
T Consensus 3 i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~ 37 (86)
T 2kzr_A 3 VRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIA 37 (86)
T ss_dssp EEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCC
T ss_pred EEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCC
Confidence 455557885 4577 889999876543 35665
No 179
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=25.44 E-value=95 Score=17.31 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=24.4
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i 37 (98)
.++|++...+|+...|.+.+..+|-... .+.|++.
T Consensus 17 ~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~ 55 (93)
T 2d07_B 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 55 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCG
T ss_pred eEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCc
Confidence 3567776778888889999998755443 3456654
No 180
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=25.28 E-value=45 Score=21.84 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=19.6
Q ss_pred EEEEeCCCchHHHHHHHcCCCcc
Q 034300 16 HEFEAQEDQYILDAAEEAGVDLP 38 (98)
Q Consensus 16 ~~i~~~~g~tlL~a~~~~gi~i~ 38 (98)
..+.|.+|+||...|++.|+.+.
T Consensus 144 ~~Y~V~~GDTL~~IA~~fgvsv~ 166 (212)
T 4eby_A 144 VTYPLRPEDSLSSIARSSGVSAD 166 (212)
T ss_dssp EEEECCTTCCHHHHHHHHTSCHH
T ss_pred EEEEECCCCcHHHHHHHHCcCHH
Confidence 46889999999999999888753
No 181
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=24.89 E-value=65 Score=22.46 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=24.8
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCcc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDLP 38 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i~ 38 (98)
+++|+|. -+|+.+++++++..|+.+.= ...||+..
T Consensus 5 ~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~ 43 (320)
T 3shq_A 5 EVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPE 43 (320)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 5667774 47888899999999988743 23576643
No 182
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=24.52 E-value=1.1e+02 Score=17.82 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=24.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCcc
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDLP 38 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i~ 38 (98)
++|++...+|+...|.+.+.++|-... .+.|++..
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~ 65 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRN 65 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSS
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcc
Confidence 567776678888899999998854433 34566543
No 183
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=24.49 E-value=16 Score=23.90 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=0.0
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHH
Q 034300 6 IKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 6 v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
|+|...+|+.+++++++.+|+.+.
T Consensus 3 I~VKtL~GktitLeV~~sdTV~~L 26 (189)
T 2xzm_9 3 VQVKTLEGETKIYTLEQGTSVLDL 26 (189)
T ss_dssp ------------------------
T ss_pred EEEEcCCCCEEEEEECCcChHHHH
Confidence 444445787788999999998774
No 184
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=24.37 E-value=47 Score=17.42 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=15.3
Q ss_pred EEEeCCCchHHHHHHH---cCCC
Q 034300 17 EFEAQEDQYILDAAEE---AGVD 36 (98)
Q Consensus 17 ~i~~~~g~tlL~a~~~---~gi~ 36 (98)
.+.+.++.|+.+|+.. +++.
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~ 24 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAG 24 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCS
T ss_pred CEEECCCCcHHHHHHHHHHcCCC
Confidence 4788999999998854 5554
No 185
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.06 E-value=1.1e+02 Score=17.58 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=24.9
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHH----HHcCCCc
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAA----EEAGVDL 37 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~----~~~gi~i 37 (98)
.++|++...+|+...|.+.+..+|-... .+.|++.
T Consensus 24 ~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~ 62 (104)
T 1wz0_A 24 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 62 (104)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCT
T ss_pred eEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCc
Confidence 3567777778888899999998854433 3467764
No 186
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=23.94 E-value=16 Score=22.78 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred EEEEcCCCCEEEEEeCCCchHHHHH
Q 034300 6 IKLIGPNGEEHEFEAQEDQYILDAA 30 (98)
Q Consensus 6 v~i~~~~g~~~~i~~~~g~tlL~a~ 30 (98)
|+|...+|+...+++++.+|+.+.=
T Consensus 3 I~VK~l~G~~~~l~V~~~~TV~~LK 27 (152)
T 3u5c_f 3 IFVKTLTGKTITLEVESSDTIDNVK 27 (152)
T ss_dssp -------------------------
T ss_pred EEEEeCCCCEEEEEECCCCCHHHHH
Confidence 4454457877788999999988743
No 187
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=23.29 E-value=27 Score=19.43 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=21.7
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHHHcCCC
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
|+.++|.+....| +.=+.|+++..++.+.|+.
T Consensus 1 ~~~~~V~V~lK~g----VlDpqG~av~~al~~LG~~ 32 (84)
T 1t4a_A 1 MYKVKVYVSLKES----VLDPQGSAVQHALHSMTYN 32 (84)
T ss_dssp CEEEEEEEEECTT----SCCHHHHHHHHHHHHTTCT
T ss_pred CeEEEEEEEECCC----CcCcHHHHHHHHHHHcCCC
Confidence 6666666643333 3236688999999998885
No 188
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=23.29 E-value=65 Score=23.05 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=19.7
Q ss_pred EEEEeCCCchHHHHHHHcCCCc
Q 034300 16 HEFEAQEDQYILDAAEEAGVDL 37 (98)
Q Consensus 16 ~~i~~~~g~tlL~a~~~~gi~i 37 (98)
++.++.+|+||-.++.+.|++-
T Consensus 15 ~~~~V~~GDTL~~IL~r~Gls~ 36 (371)
T 3slu_A 15 VQEAVQPGDSLADVLARSGMAR 36 (371)
T ss_dssp EEEECCTTCCHHHHHHHTTCCH
T ss_pred EEEEECCCCcHHHHHHHcCCCH
Confidence 4688999999999999999983
No 189
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=23.06 E-value=1.1e+02 Score=17.07 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=20.7
Q ss_pred ceEEEEEEcC----CC-CEEEEEeCCCchHHHHHHHcCC
Q 034300 2 AVYKIKLIGP----NG-EEHEFEAQEDQYILDAAEEAGV 35 (98)
Q Consensus 2 ~~~~v~i~~~----~g-~~~~i~~~~g~tlL~a~~~~gi 35 (98)
|+++|+++.. -| ...+++++++.|+-+.+...+.
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~ 48 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKK 48 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHH
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHh
Confidence 3556666421 12 3457888889998887765443
No 190
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=22.19 E-value=50 Score=20.45 Aligned_cols=19 Identities=5% Similarity=-0.031 Sum_probs=15.0
Q ss_pred CEEEEEeCCCchHHHHHHH
Q 034300 14 EEHEFEAQEDQYILDAAEE 32 (98)
Q Consensus 14 ~~~~i~~~~g~tlL~a~~~ 32 (98)
+.+.+.+++|+.|++++.+
T Consensus 19 r~~vlrL~~Gedl~~~i~~ 37 (154)
T 2hx0_A 19 RFYALRLLPGQEVFSQLHA 37 (154)
T ss_dssp EEEEEEECTTCBHHHHHHH
T ss_pred cEEEEEECCCCcHHHHHHH
Confidence 4567899999988887754
No 191
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=21.86 E-value=1.5e+02 Score=20.00 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=23.8
Q ss_pred eEEEEEEcCCCCEEEEEeCCCchHHHHHHH
Q 034300 3 VYKIKLIGPNGEEHEFEAQEDQYILDAAEE 32 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~~~~g~tlL~a~~~ 32 (98)
..-|+|+..||..+++.|++++|.-|.+..
T Consensus 8 ~~ivkv~~~d~ss~~l~V~~~mta~ev~~~ 37 (256)
T 3hk0_A 8 KQDVKVFSEDGTSKVVEILADMTARDLCQL 37 (256)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHH
T ss_pred ceEEEEEecCCcEEEEEECCCCCHHHHHHH
Confidence 345777778898889999999998777644
No 192
>3j20_G 30S ribosomal protein S6E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.75 E-value=1.1e+02 Score=18.59 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=16.7
Q ss_pred CceEEEEEEcCC-CCEEEEEeCCC
Q 034300 1 MAVYKIKLIGPN-GEEHEFEAQED 23 (98)
Q Consensus 1 M~~~~v~i~~~~-g~~~~i~~~~g 23 (98)
|+.+++.|..|. |.++.+++...
T Consensus 1 m~~~Kl~Is~P~tG~qk~iEidde 24 (125)
T 3j20_G 1 MATFKLVISDPKSGIAKQVEITGA 24 (125)
T ss_dssp CCCEEEEEEETTTTEEEEEEECST
T ss_pred CCceEEEEEcCCCCEEEEEEcCch
Confidence 777787776654 77778888765
No 193
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=21.52 E-value=83 Score=18.86 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=20.7
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCchHHHHHH----HcCCCc
Q 034300 1 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAE----EAGVDL 37 (98)
Q Consensus 1 M~~~~v~i~~~~g~~~~i~~~~g~tlL~a~~----~~gi~i 37 (98)
|.+| |.+ ......+.+++++..|+.+.=. ..|++.
T Consensus 1 m~vF-l~I-kr~ktTI~ldve~sdTV~~lK~kI~~~~giPp 39 (118)
T 4ajy_B 1 MDVF-LMI-RRHKTTIFTDAKESSTVFELKRIVEGILKRPP 39 (118)
T ss_dssp CEEE-EEE-EEBTEEEEEEEETTSBHHHHHHHHHHHHCCCG
T ss_pred CceE-EEE-ecCCEEEEEEcCCCChHHHHHHHHHHHHCCCH
Confidence 4443 344 3334456679999999987432 346553
No 194
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=21.29 E-value=44 Score=17.96 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCchHHHHHHHcCCC
Q 034300 11 PNGEEHEFEAQEDQYILDAAEEAGVD 36 (98)
Q Consensus 11 ~~g~~~~i~~~~g~tlL~a~~~~gi~ 36 (98)
.+++ +++++++.|+.+.+...+++
T Consensus 20 ~n~~--~~~~~~~~Tv~dLl~~L~~~ 43 (77)
T 1rws_A 20 NIEK--EIEWREGMKVRDILRAVGFN 43 (77)
T ss_dssp CCCC--CCCCCSSCCHHHHHHTTTCS
T ss_pred cCCE--EEECCCCCcHHHHHHHhCCC
Confidence 3554 67788899999999988864
No 195
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=21.22 E-value=1.2e+02 Score=16.82 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCCEEEEE--eCCCchHHHHHH
Q 034300 3 VYKIKLIGPNGEEHEFE--AQEDQYILDAAE 31 (98)
Q Consensus 3 ~~~v~i~~~~g~~~~i~--~~~g~tlL~a~~ 31 (98)
.++|+| +.+|++.+++ +..|.-|-.++.
T Consensus 7 ditiki-qrdgqeieidirvstgkeleralq 36 (96)
T 2jvf_A 7 DITIKI-QRDGQEIEIDIRVSTGKELERALQ 36 (96)
T ss_dssp EEEEEE-EETTEEEEEEEECCSSSHHHHHHH
T ss_pred EEEEEE-eeCCeEEEEEEEEcccHHHHHHHH
Confidence 467777 7789866654 456766554443
No 196
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=20.87 E-value=1.8e+02 Score=19.04 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDAAE 31 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a~~ 31 (98)
..|+++.+||....+.+++..|..|+..
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~ 62 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLD 62 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHH
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHH
Confidence 3467778899888999999998887654
No 197
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=20.58 E-value=98 Score=18.93 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=28.3
Q ss_pred CCCEEEEEeCCCchHHHHHHH----cCCCccCCCccccccccEEEEe
Q 034300 12 NGEEHEFEAQEDQYILDAAEE----AGVDLPYSCRAGACSTCAGKLV 54 (98)
Q Consensus 12 ~g~~~~i~~~~g~tlL~a~~~----~gi~i~~~C~~G~Cg~C~v~v~ 54 (98)
.|+.+.+.+++|+.|++++.+ +|+..-+-=+.|.......+..
T Consensus 14 ~gr~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~ 60 (149)
T 3htn_A 14 IGNKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFF 60 (149)
T ss_dssp ETTEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEE
T ss_pred cCCEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEcc
Confidence 366788999999998887754 6776433312666665555543
No 198
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=20.26 E-value=69 Score=24.47 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEEcCCCCEEEEEeCCCchHHHHHHHcC
Q 034300 5 KIKLIGPNGEEHEFEAQEDQYILDAAEEAG 34 (98)
Q Consensus 5 ~v~i~~~~g~~~~i~~~~g~tlL~a~~~~g 34 (98)
+|++ |||. ..+++.|.|+++.|..-+
T Consensus 3 ~~~~--~d~~--~~~~~~~~t~~~~a~~i~ 28 (642)
T 1qf6_A 3 VITL--PDGS--QRHYDHAVSPMDVALDIG 28 (642)
T ss_dssp EEEC--TTSC--EEECSSCBCHHHHHHHHC
T ss_pred eEEc--CCCC--eEEecCCCCHHHHHHHhc
Confidence 4544 7887 577889999999997753
No 199
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=20.23 E-value=1.5e+02 Score=17.59 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCchHHHH
Q 034300 4 YKIKLIGPNGEEHEFEAQEDQYILDA 29 (98)
Q Consensus 4 ~~v~i~~~~g~~~~i~~~~g~tlL~a 29 (98)
.+|.|..|||....-.....+||-+.
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~tl~~V 69 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAKLLAL 69 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHH
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHH
Confidence 46777779998777777888887654
Done!