BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034302
MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVED
KSPPSGRGTTNGRKNSASVPQPQKKKGGFGLGDLFAKK

High Scoring Gene Products

Symbol, full name Information P value
AT3G47070 protein from Arabidopsis thaliana 7.2e-20

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034302
        (98 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2075596 - symbol:AT3G47070 species:3702 "Arabi...   236  7.2e-20   1


>TAIR|locus:2075596 [details] [associations]
            symbol:AT3G47070 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=ISS;IDA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009637 "response
            to blue light" evidence=RCA] [GO:0009902 "chloroplast relocation"
            evidence=RCA] [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
            [GO:0010218 "response to far red light" evidence=RCA] [GO:0015979
            "photosynthesis" evidence=RCA] [GO:0030003 "cellular cation
            homeostasis" evidence=RCA] [GO:0034660 "ncRNA metabolic process"
            evidence=RCA] [GO:0070838 "divalent metal ion transport"
            evidence=RCA] EMBL:CP002686 GO:GO:0009941 GO:GO:0009535
            EMBL:AL133292 EMBL:AY086566 EMBL:AY142645 IPI:IPI00525750
            PIR:T45643 RefSeq:NP_190291.1 UniGene:At.24937
            ProteinModelPortal:Q9SD66 SMR:Q9SD66 STRING:Q9SD66 PRIDE:Q9SD66
            ProMEX:Q9SD66 DNASU:823860 EnsemblPlants:AT3G47070.1 GeneID:823860
            KEGG:ath:AT3G47070 TAIR:At3g47070 InParanoid:Q9SD66 OMA:NSAPTPV
            PhylomeDB:Q9SD66 ProtClustDB:CLSN2713630 Genevestigator:Q9SD66
            InterPro:IPR021584 Pfam:PF11493 Uniprot:Q9SD66
        Length = 100

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 48/85 (56%), Positives = 62/85 (72%)

Query:     1 MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVED 60
             M S  ++SFAPATVRVYA +    +GG KEEK+ +D++LG M KQDQFYET+P+LKKV++
Sbjct:     1 MVSSLLMSFAPATVRVYATSTKGGSGGPKEEKNPIDFVLGFMTKQDQFYETNPLLKKVDE 60

Query:    61 K--SPPSGRGTTNGRKNSASVPQPQ 83
             K  +   GRGT  G KNSA  P P+
Sbjct:    61 KEGTTTGGRGTVRGGKNSAPTPVPK 85


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.126   0.357    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       98        83   0.00091  102 3  11 23  0.38    30
                                                     29  0.44    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  503 (54 KB)
  Total size of DFA:  93 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.01u 0.15s 11.16t   Elapsed:  00:00:01
  Total cpu time:  11.01u 0.15s 11.16t   Elapsed:  00:00:01
  Start:  Fri May 10 20:31:00 2013   End:  Fri May 10 20:31:01 2013

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