BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034302
         (98 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P09119|CDC6_YEAST Cell division control protein 6 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=CDC6 PE=1 SV=3
          Length = 513

 Score = 30.8 bits (68), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 1   MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQ--KQDQFYETDPILKKV 58
           M+SLP I F P  ++     A K AG + + + L D + G ++  + ++ +   P    +
Sbjct: 304 MSSLPTIIFQPMAIKF---AAKKCAGNTGDLRKLFDVLRGSIEIYELEKRFLLSPTRGSL 360

Query: 59  EDKSPPSGRGTTNGRKNSASVPQPQKKKGGFGLGDLFAK 97
                P    T+  +K   S P+PQ K G   +  +F+K
Sbjct: 361 NSAQVPLTPTTSPVKK---SYPEPQGKIGLNYIAKVFSK 396


>sp|Q8DT52|GLGB_STRMU 1,4-alpha-glucan branching enzyme GlgB OS=Streptococcus mutans
           serotype c (strain ATCC 700610 / UA159) GN=glgB PE=3
           SV=1
          Length = 628

 Score = 30.8 bits (68), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 19  ATAAKEAGGSKEEKSL---LDWILGGMQKQDQFYETDPILKKVE 59
           +TA  +  G +EE  L     W +G M    +FYE DPI +K +
Sbjct: 357 STATTKITGRREEGGLGFDYKWNMGWMNDILKFYEEDPIYRKYD 400


>sp|Q11114|YX07_CAEEL Uncharacterized protein C03B1.7 OS=Caenorhabditis elegans
           GN=C03B1.7 PE=4 SV=2
          Length = 847

 Score = 29.6 bits (65), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)

Query: 29  KEEKSLLDWILGGMQKQDQFYETDPILKKVEDKSPPSGRGTTNGRKN 75
           KE+++ +D  + G+  +D  YET   LK  EDKSPP     ++ +K+
Sbjct: 187 KEQRNDMDRNISGVSVKD--YET---LKNFEDKSPPQAENASSSKKD 228


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.130    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,357,631
Number of Sequences: 539616
Number of extensions: 1622419
Number of successful extensions: 3525
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3519
Number of HSP's gapped (non-prelim): 22
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)