Query 034302
Match_columns 98
No_of_seqs 25 out of 27
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 20:39:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fft_A Thylakoid soluble phosp 100.0 7.1E-38 2.4E-42 214.4 6.7 76 21-98 2-83 (84)
2 2ebv_A Nuclear pore complex pr 28.7 53 0.0018 20.2 3.0 10 89-98 19-28 (57)
3 2d16_A Hypothetical protein PH 17.6 52 0.0018 24.4 1.5 16 9-24 101-116 (162)
4 2ekm_A Hypothetical protein ST 16.8 49 0.0017 24.6 1.2 16 9-24 102-117 (162)
5 2ckc_A Chromodomain-helicase-D 16.6 44 0.0015 22.3 0.9 12 28-39 43-54 (80)
6 1vgg_A Conserved hypothetical 16.6 50 0.0017 24.5 1.2 15 10-24 102-116 (161)
7 1wvq_A Hypothetical protein PA 16.5 51 0.0017 24.6 1.2 15 9-23 105-119 (167)
8 2wsc_I Photosystem I reaction 15.2 25 0.00085 20.8 -0.6 21 1-22 1-21 (40)
9 3llr_A DNA (cytosine-5)-methyl 15.0 56 0.0019 23.2 1.1 15 30-44 129-143 (154)
10 2yhs_A FTSY, cell division pro 14.0 38 0.0013 28.1 0.0 12 30-41 5-17 (503)
No 1
>2fft_A Thylakoid soluble phosphoprotein; TSP9, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Spinacia oleracea} SCOP: g.88.1.1
Probab=100.00 E-value=7.1e-38 Score=214.41 Aligned_cols=76 Identities=55% Similarity=0.869 Sum_probs=65.6
Q ss_pred cccccCCcchhhhhHHHHHhhhccccceeeccchhhcccCCCCC--CC--CCcCCCCCCCCCcCCCccc-C-CCCccccc
Q 034302 21 AAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVEDKSPP--SG--RGTTNGRKNSASVPQPQKK-K-GGFGLGDL 94 (98)
Q Consensus 21 a~~~~a~~keEKgl~D~I~G~l~KedQ~~ETDPiL~Kv~~k~~~--~g--rGt~~gkk~~~~~~~p~kk-k-~GGGfGGL 94 (98)
|++++++++|||||+|||||+|||||||||||||||||++++++ ++ |+|++|||+++++ |+++ + ++||||||
T Consensus 2 a~~~~a~akeEKgl~D~i~G~i~K~dQ~~ETDPiL~Kv~~k~~~~~a~~~~~tt~g~k~~~~~--p~k~~~gggGGfGGL 79 (84)
T 2fft_A 2 AAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDVKSSGSTSGKKGGTTSGKKGTVSI--PSKKKNGNGGVFGGL 79 (84)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHSCCCCSCCSCCSSSCSCCCCCSCCCCCCCSCSCSCCSSSSS--CSSCSCCSCCSSSSS
T ss_pred CccCCCcccccccHHHHHhhhhhhhhhheecchhhhccccCCCcccccccccccccccccccC--ChhhhcCCCCcccce
Confidence 56778999999999999999999999999999999999999974 23 3789999999998 5533 3 34779999
Q ss_pred cccC
Q 034302 95 FAKK 98 (98)
Q Consensus 95 FaKk 98 (98)
|+||
T Consensus 80 FaKK 83 (84)
T 2fft_A 80 FAKK 83 (84)
T ss_dssp SCCC
T ss_pred eccC
Confidence 9997
No 2
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.68 E-value=53 Score=20.24 Aligned_cols=10 Identities=40% Similarity=0.949 Sum_probs=8.2
Q ss_pred CccccccccC
Q 034302 89 FGLGDLFAKK 98 (98)
Q Consensus 89 GGfGGLFaKk 98 (98)
-|||.+|.++
T Consensus 19 ~gfg~~FK~~ 28 (57)
T 2ebv_A 19 LGFGDKFKRP 28 (57)
T ss_dssp CSCCSCCCCC
T ss_pred CCHHHhcCCC
Confidence 4899999875
No 3
>2d16_A Hypothetical protein PH1918; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=17.64 E-value=52 Score=24.44 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.1
Q ss_pred ccCceeeEeeeccccc
Q 034302 9 FAPATVRVYAATAAKE 24 (98)
Q Consensus 9 fa~~~~rV~aata~~~ 24 (98)
-.|.++|+|+|||+.-
T Consensus 101 ~vpEVc~I~~ATANPl 116 (162)
T 2d16_A 101 NHPAVAMIYGASENPF 116 (162)
T ss_dssp TSTTEEEEEEEESSSE
T ss_pred cCcceeEEEEecCCCE
Confidence 3688999999999843
No 4
>2ekm_A Hypothetical protein ST1511; NPPSFA, national project on protein ST and functional analyses, riken structural genomics/proteomi initiative; 2.06A {Sulfolobus tokodaii}
Probab=16.78 E-value=49 Score=24.56 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=13.1
Q ss_pred ccCceeeEeeeccccc
Q 034302 9 FAPATVRVYAATAAKE 24 (98)
Q Consensus 9 fa~~~~rV~aata~~~ 24 (98)
-.|.++|+|+|||+.-
T Consensus 102 ~vpEVc~I~~ATANPl 117 (162)
T 2ekm_A 102 NVEEVVRIFAATANPL 117 (162)
T ss_dssp TSTTCCEEEEEESSCE
T ss_pred cCcceeEEEEecCCCE
Confidence 3688899999999843
No 5
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=16.64 E-value=44 Score=22.32 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=9.5
Q ss_pred cchhhhhHHHHH
Q 034302 28 SKEEKSLLDWIL 39 (98)
Q Consensus 28 ~keEKgl~D~I~ 39 (98)
+-.-|.|.||+-
T Consensus 43 AP~~KdL~dWLr 54 (80)
T 2ckc_A 43 APKNKDLVEWLK 54 (80)
T ss_dssp SCBHHHHHHHHH
T ss_pred CccccCHHHHHH
Confidence 336899999985
No 6
>1vgg_A Conserved hypothetical protein TT1634; thermus thermophilus HB8, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.75A {Thermus thermophilus} SCOP: d.256.1.1
Probab=16.56 E-value=50 Score=24.50 Aligned_cols=15 Identities=53% Similarity=0.736 Sum_probs=12.6
Q ss_pred cCceeeEeeeccccc
Q 034302 10 APATVRVYAATAAKE 24 (98)
Q Consensus 10 a~~~~rV~aata~~~ 24 (98)
.|.++|+|+|||+.-
T Consensus 102 vpEVc~I~~ATANPl 116 (161)
T 1vgg_A 102 CPEVVRIYAATANPL 116 (161)
T ss_dssp CTTCCEEEEEESSCE
T ss_pred CcceeEEEEecCCCE
Confidence 688899999999843
No 7
>1wvq_A Hypothetical protein PAE2307; phosphorylated histidine, structural genomics, unknown funct; HET: NEP; 1.45A {Pyrobaculum aerophilum} PDB: 2gl0_A* 2jb7_A*
Probab=16.47 E-value=51 Score=24.60 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=12.6
Q ss_pred ccCceeeEeeecccc
Q 034302 9 FAPATVRVYAATAAK 23 (98)
Q Consensus 9 fa~~~~rV~aata~~ 23 (98)
-.|.++|+|+|||+.
T Consensus 105 ~vpEVc~I~~ATANP 119 (167)
T 1wvq_A 105 NVPEVVRIFAATANP 119 (167)
T ss_dssp TSTTCCEEEEEESSC
T ss_pred cCcceeEEEEecCCC
Confidence 368889999999984
No 8
>2wsc_I Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_I* 2wsf_I*
Probab=15.19 E-value=25 Score=20.85 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=16.6
Q ss_pred CCccCcccccCceeeEeeeccc
Q 034302 1 MASLPIISFAPATVRVYAATAA 22 (98)
Q Consensus 1 maSl~~~~fa~~~~rV~aata~ 22 (98)
|+-||- .|+|.++-|++|.+-
T Consensus 1 ~s~LPs-IfVPlVGLvfPAi~M 21 (40)
T 2wsc_I 1 MINLPS-LFVPLVGLLFPAVAM 21 (40)
T ss_dssp CCCCCT-TTTCCCCCHHHHHHH
T ss_pred CCCCcc-hHHhHHHHHHHHHHH
Confidence 567776 789999999987654
No 9
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=15.00 E-value=56 Score=23.16 Aligned_cols=15 Identities=40% Similarity=1.083 Sum_probs=12.4
Q ss_pred hhhhhHHHHHhhhcc
Q 034302 30 EEKSLLDWILGGMQK 44 (98)
Q Consensus 30 eEKgl~D~I~G~l~K 44 (98)
+.|-+|||.+|+++-
T Consensus 129 ~~k~m~~wa~~gf~p 143 (154)
T 3llr_A 129 QNKPMIEWALGGFQP 143 (154)
T ss_dssp HHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHhcCcCC
Confidence 479999999987763
No 10
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=14.02 E-value=38 Score=28.14 Aligned_cols=12 Identities=17% Similarity=0.960 Sum_probs=0.0
Q ss_pred hhhhhHHHH-Hhh
Q 034302 30 EEKSLLDWI-LGG 41 (98)
Q Consensus 30 eEKgl~D~I-~G~ 41 (98)
+.+|||+|+ ||.
T Consensus 5 ~~~~~~~~~~~~~ 17 (503)
T 2yhs_A 5 KKRGFFSWLGFGQ 17 (503)
T ss_dssp -------------
T ss_pred cccchhhhccccc
Confidence 445999999 554
Done!