BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034303
MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL
TLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD

High Scoring Gene Products

Symbol, full name Information P value
AT3G05550 protein from Arabidopsis thaliana 3.2e-26
AT5G27760 protein from Arabidopsis thaliana 2.6e-24

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034303
        (98 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2078032 - symbol:AT3G05550 "AT3G05550" species...   296  3.2e-26   1
TAIR|locus:2180335 - symbol:AT5G27760 "AT5G27760" species...   278  2.6e-24   1


>TAIR|locus:2078032 [details] [associations]
            symbol:AT3G05550 "AT3G05550" species:3702 "Arabidopsis
            thaliana" [GO:0001666 "response to hypoxia" evidence=ISS]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] Pfam:PF04588 GO:GO:0016021
            EMBL:CP002686 GenomeReviews:BA000014_GR InterPro:IPR007667
            PROSITE:PS51503 EMBL:AC011620 HOGENOM:HOG000239207
            ProtClustDB:CLSN2684489 IPI:IPI00535400 RefSeq:NP_187206.1
            UniGene:At.53192 EnsemblPlants:AT3G05550.1 GeneID:819721
            KEGG:ath:AT3G05550 TAIR:At3g05550 eggNOG:NOG308976
            InParanoid:Q9M9W0 OMA:NMKTSVK PhylomeDB:Q9M9W0
            Genevestigator:Q9M9W0 Uniprot:Q9M9W0
        Length = 97

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 57/98 (58%), Positives = 65/98 (66%)

Query:     1 MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHXXXXXXXX 60
             M E K+K E +R+WV  +KLRTVG LWLSGI GSIAYNWSQP MKTSVKIIH        
Sbjct:     1 MVESKTKFEEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQAL 60

Query:    61 XXXXXXXXXVVEYYDHKSGSKTERYAKFLPADPYAHKD 98
                      VVEYYDHK+ + T RY KFLP +  +HKD
Sbjct:    61 TLAALAGAAVVEYYDHKTEA-TNRYPKFLPPENLSHKD 97


>TAIR|locus:2180335 [details] [associations]
            symbol:AT5G27760 "AT5G27760" species:3702 "Arabidopsis
            thaliana" [GO:0001666 "response to hypoxia" evidence=ISS]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0009723 "response
            to ethylene stimulus" evidence=RCA] Pfam:PF04588 GO:GO:0016021
            EMBL:CP002688 GenomeReviews:BA000015_GR InterPro:IPR007667
            PROSITE:PS51503 EMBL:AY084446 EMBL:BT004245 EMBL:BT005396
            IPI:IPI00528869 RefSeq:NP_198128.1 UniGene:At.30789 IntAct:Q8LG60
            STRING:Q8LG60 PaxDb:Q8LG60 PRIDE:Q8LG60 EnsemblPlants:AT5G27760.1
            GeneID:832838 KEGG:ath:AT5G27760 TAIR:At5g27760 eggNOG:NOG259841
            HOGENOM:HOG000239207 InParanoid:Q8LG60 OMA:HQYAKQF PhylomeDB:Q8LG60
            ProtClustDB:CLSN2684489 ArrayExpress:Q8LG60 Genevestigator:Q8LG60
            Uniprot:Q8LG60
        Length = 96

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 52/92 (56%), Positives = 64/92 (69%)

Query:     1 MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHXXXXXXXX 60
             MAE K+K+  +REW++++KLRTVG LWLSGI+GSIAYNWS+P MKTSV+IIH        
Sbjct:     1 MAEPKTKVAEIREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQAL 60

Query:    61 XXXXXXXXXVVEYYDHKSGSKTERYAKFLPAD 92
                       VEYYDHKSG+ T+R  KFL  D
Sbjct:    61 TLAALAGAAAVEYYDHKSGA-TDRIPKFLKPD 91


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       98        81   0.00091  102 3  11 23  0.45    29
                                                     29  0.42    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  560 (60 KB)
  Total size of DFA:  123 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.75u 0.11s 7.86t   Elapsed:  00:00:00
  Total cpu time:  7.75u 0.11s 7.86t   Elapsed:  00:00:00
  Start:  Fri May 10 20:33:31 2013   End:  Fri May 10 20:33:31 2013

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