BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034303
         (98 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P53721|RCF2_YEAST Respiratory supercomplex factor 2, mitochondrial OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=RCF2 PE=1
           SV=1
          Length = 224

 Score = 34.3 bits (77), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 33/65 (50%)

Query: 13  EWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVE 72
           E +  NK + +   W + + GS       P M  + KI+ AR++AQ +T+  L  +  + 
Sbjct: 110 EGLSNNKYKIITGAWAASLYGSWVIVNKDPIMTKAQKIVQARMYAQFITVGLLLASVGLS 169

Query: 73  YYDHK 77
            Y++K
Sbjct: 170 MYENK 174


>sp|Q503V1|CYBR1_DANRE Cytochrome b reductase 1 OS=Danio rerio GN=cybrd1 PE=2 SV=1
          Length = 253

 Score = 33.5 bits (75), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 20  LRTVGSLWLSGIAGSIAYN--WSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHK 77
           L  +G ++L GIA  + Y   W+    K  +K+IHA LH  A  LA ++  AV  +++ K
Sbjct: 51  LMVIGFIFLQGIA-IVVYRLPWTWRCSKQMMKLIHAGLHILAFILAVISVVAVFVFHNAK 109

Query: 78  S 78
           +
Sbjct: 110 N 110


>sp|Q6DDR3|CYBR1_XENLA Cytochrome b reductase 1 OS=Xenopus laevis GN=cybrd1 PE=2 SV=2
          Length = 283

 Score = 33.1 bits (74), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 20  LRTVGSLWLSGIAGSIAYN--WSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHK 77
           L T G +++ GIA  I Y   W+    K  +K IHA LH  AL    +A  AV ++++ K
Sbjct: 51  LVTSGFIFIQGIA-IIVYRLPWTWKCSKLLMKFIHAGLHLTALIFTIVALVAVFDFHNAK 109

Query: 78  S 78
           +
Sbjct: 110 N 110


>sp|Q5CZL8|CYBR1_XENTR Cytochrome b reductase 1 OS=Xenopus tropicalis GN=cybrd1 PE=2 SV=2
          Length = 283

 Score = 32.0 bits (71), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 20  LRTVGSLWLSGIAGSIAYN--WSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHK 77
           L T G +++ GIA  I Y   W+    K  +K IHA LH  A     +A  AV ++++ K
Sbjct: 51  LVTSGFIFIQGIA-IIVYRLPWTWNCSKLLMKFIHAGLHLTAFVFTIVALVAVFDFHNAK 109

Query: 78  S 78
           +
Sbjct: 110 N 110


>sp|Q60720|CY561_MOUSE Cytochrome b561 OS=Mus musculus GN=Cyb561 PE=2 SV=2
          Length = 250

 Score = 30.0 bits (66), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 9   ESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGA 68
           ES  ++ V      +G ++L G A  + Y   +   K + KI+H  LH  A  +A +   
Sbjct: 44  ESSLQFNVHPLCMVIGMIFLQGDA-LLVYRVFRREAKRTTKILHGLLHVFAFIIALVGLV 102

Query: 69  AVVEYYDHK 77
           AV +Y+  K
Sbjct: 103 AVFDYHKKK 111


>sp|Q95245|CY561_PIG Cytochrome b561 OS=Sus scrofa GN=CYB561 PE=2 SV=1
          Length = 252

 Score = 29.6 bits (65), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 9   ESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGA 68
           ES  ++ V      +G ++L G A  + Y   +   K + KI+H  LH  A  +A +   
Sbjct: 46  ESALQFNVHPLCMIIGLVFLQGDA-LLVYRVFRNEAKRTTKILHGLLHVLAFVIALVGLV 104

Query: 69  AVVEYYDHKS 78
           AV +Y+  K 
Sbjct: 105 AVFDYHRKKG 114


>sp|Q4JT33|RPOC_CORJK DNA-directed RNA polymerase subunit beta' OS=Corynebacterium
           jeikeium (strain K411) GN=rpoC PE=3 SV=1
          Length = 1323

 Score = 29.3 bits (64), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 29  SGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSGSK 81
           SG AG++   W+  GMK  V         + +  +   G +V+EY+++  GS+
Sbjct: 808 SGAAGNMRQIWTLAGMKGMVTNSRGEYITRPIKTSFREGLSVLEYFNNSHGSR 860


>sp|Q925G2|CYBR1_MOUSE Cytochrome b reductase 1 OS=Mus musculus GN=Cybrd1 PE=1 SV=2
          Length = 290

 Score = 28.9 bits (63), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 20  LRTVGSLWLSGIAGSIAYN--WSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYD 75
           L   G +++ GIA  I Y   W+    K  +K IHA L+A A  LA ++  AV EY++
Sbjct: 53  LAVTGFVFIQGIA-IIVYRLPWTWKCSKLLMKSIHAGLNAVAAILAIISVVAVFEYHN 109


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.127    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,895,698
Number of Sequences: 539616
Number of extensions: 1119426
Number of successful extensions: 3521
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3515
Number of HSP's gapped (non-prelim): 22
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)