Query 034303
Match_columns 98
No_of_seqs 101 out of 203
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 12:00:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4431 Uncharacterized protei 99.8 4.2E-21 9.2E-26 131.2 7.0 78 3-80 14-92 (100)
2 PF04588 HIG_1_N: Hypoxia indu 99.7 1E-18 2.3E-23 107.1 2.2 54 15-68 1-54 (54)
3 PF05957 DUF883: Bacterial pro 90.6 0.6 1.3E-05 30.5 4.3 33 7-39 61-93 (94)
4 PRK10404 hypothetical protein; 89.8 0.79 1.7E-05 31.2 4.5 30 7-36 68-97 (101)
5 PRK10132 hypothetical protein; 88.1 1.2 2.7E-05 30.6 4.6 33 8-40 75-107 (108)
6 COG4575 ElaB Uncharacterized c 84.2 2.3 5E-05 29.5 4.3 33 7-39 71-103 (104)
7 PF06946 Phage_holin_5: Phage 80.6 11 0.00024 25.7 6.4 58 16-81 31-88 (93)
8 cd03131 GATase1_HTS Type 1 glu 62.8 12 0.00026 27.6 3.6 34 7-40 86-119 (175)
9 COG5547 Small integral membran 61.4 25 0.00054 22.2 4.4 16 12-27 1-16 (62)
10 PF15183 MRAP: Melanocortin-2 54.8 11 0.00024 25.5 2.1 19 13-31 29-47 (90)
11 COG2976 Uncharacterized protei 54.5 15 0.00032 28.4 3.0 39 3-42 6-44 (207)
12 PF12911 OppC_N: N-terminal TM 45.1 60 0.0013 18.6 4.6 30 5-34 2-31 (56)
13 PF02535 Zip: ZIP Zinc transpo 44.7 77 0.0017 23.8 5.6 58 20-80 5-64 (317)
14 TIGR01001 metA homoserine O-su 41.0 39 0.00086 27.3 3.6 34 8-41 124-157 (300)
15 PF03825 Nuc_H_symport: Nucleo 39.9 1.3E+02 0.0029 24.2 6.6 51 24-74 312-365 (400)
16 PF10031 DUF2273: Small integr 38.1 51 0.0011 19.7 3.0 18 13-30 2-19 (51)
17 KOG4342 Alpha-mannosidase [Car 37.6 10 0.00022 34.5 -0.2 46 7-62 343-388 (1078)
18 COG5395 Predicted membrane pro 37.3 54 0.0012 23.4 3.4 43 18-61 68-112 (131)
19 cd08762 Cyt_b561_CYBASC3 Verte 36.9 1.8E+02 0.0039 21.8 6.4 59 16-76 36-98 (179)
20 PF09679 TraQ: Type-F conjugat 35.9 43 0.00093 22.7 2.7 38 22-59 12-49 (93)
21 cd08764 Cyt_b561_CG1275_like N 35.5 2E+02 0.0044 21.9 7.3 61 17-77 26-86 (214)
22 PF14991 MLANA: Protein melan- 34.2 13 0.00029 26.3 0.0 31 23-53 33-63 (118)
23 PRK05368 homoserine O-succinyl 32.0 29 0.00063 27.8 1.6 31 8-38 124-154 (302)
24 cd08763 Cyt_b561_CYB561 Verteb 31.9 1.9E+02 0.0041 20.6 6.6 53 18-70 10-62 (143)
25 TIGR00990 3a0801s09 mitochondr 31.0 42 0.0009 28.2 2.4 28 2-29 17-44 (615)
26 COG4854 Predicted membrane pro 29.2 73 0.0016 22.7 3.0 57 16-89 3-62 (126)
27 PF04204 HTS: Homoserine O-suc 28.2 33 0.00072 27.6 1.3 33 8-40 123-155 (298)
28 PLN02810 carbon-monoxide oxyge 28.1 2.8E+02 0.0061 21.6 6.4 57 18-75 50-106 (231)
29 PF11368 DUF3169: Protein of u 27.9 2.3E+02 0.005 21.3 5.8 13 23-35 16-28 (248)
30 PF13219 DUF4027: Protein of u 27.6 12 0.00025 21.4 -1.0 25 49-73 2-26 (36)
31 TIGR03074 PQQ_membr_DH membran 27.3 38 0.00082 30.4 1.6 49 28-76 2-51 (764)
32 PF03672 UPF0154: Uncharacteri 26.5 67 0.0015 20.4 2.3 14 62-75 4-17 (64)
33 PF14937 DUF4500: Domain of un 26.2 77 0.0017 21.3 2.6 35 59-93 41-75 (86)
34 TIGR01006 polys_exp_MPA1 polys 25.7 1.5E+02 0.0032 21.7 4.3 29 8-36 10-38 (226)
35 PF09946 DUF2178: Predicted me 25.6 2.2E+02 0.0048 19.3 6.1 29 59-87 28-56 (111)
36 PF11028 DUF2723: Protein of u 25.2 2.8E+02 0.0061 20.4 7.2 60 23-85 78-137 (178)
37 KOG1582 UDP-galactose transpor 24.4 1E+02 0.0022 25.5 3.4 30 10-39 247-276 (367)
38 PF02238 COX7a: Cytochrome c o 23.7 1.9E+02 0.004 17.8 4.3 15 60-74 32-46 (56)
39 KOG3762 Predicted transporter 23.7 91 0.002 27.7 3.2 50 23-73 473-522 (618)
40 PRK00523 hypothetical protein; 23.6 95 0.002 20.2 2.6 18 59-76 9-26 (72)
41 TIGR03647 Na_symport_sm probab 23.4 1.4E+02 0.0031 19.3 3.4 28 51-78 42-69 (77)
42 PF07296 TraP: TraP protein; 22.8 2.4E+02 0.0051 21.7 5.0 31 29-59 38-68 (202)
43 PF05767 Pox_A14: Poxvirus vir 22.8 2.6E+02 0.0055 19.0 8.1 69 20-88 13-84 (92)
44 COG1897 MetA Homoserine trans- 22.7 1.2E+02 0.0025 24.7 3.5 42 7-50 123-164 (307)
45 PF09574 DUF2374: Protein of 21.9 1.8E+02 0.004 17.0 4.2 36 5-40 1-39 (42)
46 PF13937 DUF4212: Domain of un 21.6 1.6E+02 0.0035 19.2 3.4 56 23-78 17-73 (81)
47 PF04080 Per1: Per1-like ; In 21.3 3E+02 0.0064 21.7 5.5 61 16-76 174-234 (267)
48 PF15086 UPF0542: Uncharacteri 21.3 93 0.002 20.4 2.2 26 1-26 1-26 (74)
49 PRK01844 hypothetical protein; 21.0 1.1E+02 0.0024 19.9 2.5 17 60-76 9-25 (72)
50 PF08684 ocr: DNA mimic ocr; 20.9 82 0.0018 21.6 2.0 17 43-59 72-88 (101)
No 1
>KOG4431 consensus Uncharacterized protein, induced by hypoxia [General function prediction only]
Probab=99.84 E-value=4.2e-21 Score=131.18 Aligned_cols=78 Identities=22% Similarity=0.251 Sum_probs=73.2
Q ss_pred ccccHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 034303 3 EHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWS-QPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSGS 80 (98)
Q Consensus 3 ~~~S~~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~r-~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~~~g~ 80 (98)
+++++.+|+.++++|||++||||+..++++.+++|.+| +++.++||++||.||.|||+||++|++|+++.++++..-+
T Consensus 14 ed~~~~ekl~rk~kenP~VPlG~l~t~aal~~g~y~~r~rGn~~~sq~lmr~RVaAQgftV~AL~~G~~~~~~~e~~~~ 92 (100)
T KOG4431|consen 14 EDMSQKEKLLRKAKENPLVPLGCLGTTAALTAGLYKFRSRGNSKMSQHLMRTRVAAQGFTVGALVLGLAYTMYKEYPAK 92 (100)
T ss_pred chhhHHHHHHHHHHhCCCeeehHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhh
Confidence 56789999999999999999999999999999999999 9999999999999999999999999999999988876443
No 2
>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions. HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.
Probab=99.73 E-value=1e-18 Score=107.06 Aligned_cols=54 Identities=41% Similarity=0.501 Sum_probs=44.4
Q ss_pred HHhCchhhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 034303 15 VVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGA 68 (98)
Q Consensus 15 ~~en~y~~ig~~W~~sm~gs~a~~~r~~~~~~sqklvqaRvyAQg~Tva~L~~~ 68 (98)
+||||+.+||++|+++++.++.+++++++.+.|||+||+||||||+||++|+++
T Consensus 1 ~ke~plv~ig~~~~~~~l~~g~~~~~~g~~~~s~klmr~RV~aQ~~tv~~l~~G 54 (54)
T PF04588_consen 1 FKENPLVPIGMLATVGALAYGLYNFRRGNMKTSQKLMRARVYAQGLTVAALVGG 54 (54)
T ss_dssp S-S--CHHHHHHHHHHHHHHHHHHHTSSS----SSSSS-SHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 589999999999999999999999999999999999999999999999999986
No 3
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=90.61 E-value=0.6 Score=30.49 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHh
Q 034303 7 KLESVREWVVQNKLRTVGSLWLSGIAGSIAYNW 39 (98)
Q Consensus 7 ~~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~ 39 (98)
..+.+-++++||||..||.+-.++++..+++.+
T Consensus 61 ~~~~~~~~V~e~P~~svgiAagvG~llG~Ll~R 93 (94)
T PF05957_consen 61 AAEQTEDYVRENPWQSVGIAAGVGFLLGLLLRR 93 (94)
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhC
Confidence 367788999999999999887766666555443
No 4
>PRK10404 hypothetical protein; Provisional
Probab=89.75 E-value=0.79 Score=31.18 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Q 034303 7 KLESVREWVVQNKLRTVGSLWLSGIAGSIA 36 (98)
Q Consensus 7 ~~ek~~~~~~en~y~~ig~~W~~sm~gs~a 36 (98)
..+..-++++||||..||.+-..+++.-+.
T Consensus 68 aa~~td~yV~e~Pw~avGiaagvGlllG~L 97 (101)
T PRK10404 68 AVYRADDYVHEKPWQGIGVGAAVGLVLGLL 97 (101)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 345667899999999999875555544443
No 5
>PRK10132 hypothetical protein; Provisional
Probab=88.13 E-value=1.2 Score=30.64 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCchhhhHHHHHHHHHHHHHHHhc
Q 034303 8 LESVREWVVQNKLRTVGSLWLSGIAGSIAYNWS 40 (98)
Q Consensus 8 ~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~r 40 (98)
.+..-++++||||..||.+-..+++.-+.+.+|
T Consensus 75 ~~~~~~~V~~~Pw~svgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 75 VGCADTFVRERPWCSVGTAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcc
Confidence 445667999999999998766665555544433
No 6
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=84.18 E-value=2.3 Score=29.51 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHh
Q 034303 7 KLESVREWVVQNKLRTVGSLWLSGIAGSIAYNW 39 (98)
Q Consensus 7 ~~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~ 39 (98)
..++.=+++.||||.-||.+-+.+++.-+++++
T Consensus 71 a~~~tD~yV~e~PWq~VGvaAaVGlllGlLlsR 103 (104)
T COG4575 71 AADATDDYVRENPWQGVGVAAAVGLLLGLLLSR 103 (104)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhc
Confidence 356677899999999999987777665554443
No 7
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=80.60 E-value=11 Score=25.65 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=41.6
Q ss_pred HhCchhhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 034303 16 VQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSGSK 81 (98)
Q Consensus 16 ~en~y~~ig~~W~~sm~gs~a~~~r~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~~~g~~ 81 (98)
-+|||.|..+.-+..+.|..++...+.. . .-.++||-+ ++.|.++.+++.+-++.+|.
T Consensus 31 v~~K~iPlIs~viGilLG~~~~~~~~~~-~-----l~~~~~aG~--laGlAaTGL~e~~t~r~~~~ 88 (93)
T PF06946_consen 31 VPNKWIPLISVVIGILLGAAAYPLTGDG-N-----LALMAWAGG--LAGLAATGLFEQFTNRSKKY 88 (93)
T ss_pred CCcchhhHHHHHHHHHHHHHhhhcCCCc-c-----HHHHHHHHH--HhhhhhhhHHHHHHhhhhhc
Confidence 4899999999988888888877666421 1 234566644 67788888888888866553
No 8
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=62.85 E-value=12 Score=27.62 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHhc
Q 034303 7 KLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWS 40 (98)
Q Consensus 7 ~~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~r 40 (98)
...++++|+++|-.++++..|++=.+...+|.-.
T Consensus 86 El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~ 119 (175)
T cd03131 86 ELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIK 119 (175)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcc
Confidence 3789999999999999999999988888877653
No 9
>COG5547 Small integral membrane protein [Function unknown]
Probab=61.41 E-value=25 Score=22.24 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.7
Q ss_pred HHHHHhCchhhhHHHH
Q 034303 12 REWVVQNKLRTVGSLW 27 (98)
Q Consensus 12 ~~~~~en~y~~ig~~W 27 (98)
++|++.+||.|||+.-
T Consensus 1 meflk~fkypIIgglv 16 (62)
T COG5547 1 MEFLKKFKYPIIGGLV 16 (62)
T ss_pred CcHHHHhccchHHHHH
Confidence 3789999999999873
No 10
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=54.82 E-value=11 Score=25.49 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.1
Q ss_pred HHHHhCchhhhHHHHHHHH
Q 034303 13 EWVVQNKLRTVGSLWLSGI 31 (98)
Q Consensus 13 ~~~~en~y~~ig~~W~~sm 31 (98)
+.++-|||+|+.+.|+.-.
T Consensus 29 ~~Lka~kysIVI~FWv~LA 47 (90)
T PF15183_consen 29 EKLKANKYSIVIAFWVSLA 47 (90)
T ss_pred HHhcccceeeehhHHHHHH
Confidence 5789999999999998643
No 11
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.46 E-value=15 Score=28.36 Aligned_cols=39 Identities=21% Similarity=0.481 Sum_probs=28.3
Q ss_pred ccccHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHhcCC
Q 034303 3 EHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQP 42 (98)
Q Consensus 3 ~~~S~~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~r~~ 42 (98)
+++...|.+.+|.+||- +.+.+.-+.++++.|.|.....
T Consensus 6 ~E~qql~~ik~wwkeNG-k~li~gviLg~~~lfGW~ywq~ 44 (207)
T COG2976 6 EEQQQLEAIKDWWKENG-KALIVGVILGLGGLFGWRYWQS 44 (207)
T ss_pred hHHHHHHHHHHHHHHCC-chhHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999997 6666666777777776665533
No 12
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=45.15 E-value=60 Score=18.64 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHhCchhhhHHHHHHHHHHH
Q 034303 5 KSKLESVREWVVQNKLRTVGSLWLSGIAGS 34 (98)
Q Consensus 5 ~S~~ek~~~~~~en~y~~ig~~W~~sm~gs 34 (98)
.|..+.+.+.++.||.-.+|+.-+..++..
T Consensus 2 ~s~~~~~~~~f~~nk~a~~gl~il~~~vl~ 31 (56)
T PF12911_consen 2 RSPWKDAWRRFRRNKLAVIGLIILLILVLL 31 (56)
T ss_pred CCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 577889999999999999988766655544
No 13
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=44.73 E-value=77 Score=23.80 Aligned_cols=58 Identities=10% Similarity=0.183 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHHHHHH--HhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 034303 20 LRTVGSLWLSGIAGSIAY--NWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSGS 80 (98)
Q Consensus 20 y~~ig~~W~~sm~gs~a~--~~r~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~~~g~ 80 (98)
+..+...++.++.+.+.- ..+.+..+...++++ +..++..++|++.+.+++..+-.+.
T Consensus 5 i~~~~~i~~~s~lg~~~P~~~~~~~~~~~~~~~l~---~~~~fa~GvlL~~a~~hLLPea~~~ 64 (317)
T PF02535_consen 5 IVAILAIFIVSLLGGLLPLLIRKFSKNRLNKRILS---LLNAFAAGVLLGTAFLHLLPEAIEA 64 (317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH---HHHHHHHHHHHHHHHHHcCchhhcc
Confidence 445566666776666522 222221134444444 4678899999999999988877553
No 14
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=41.04 E-value=39 Score=27.30 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCchhhhHHHHHHHHHHHHHHHhcC
Q 034303 8 LESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQ 41 (98)
Q Consensus 8 ~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~r~ 41 (98)
..++++|.++|-++.+...|++=.+.+..|.-.+
T Consensus 124 l~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K 157 (300)
T TIGR01001 124 LTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPK 157 (300)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCc
Confidence 5789999999999999999999888887776543
No 15
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=39.92 E-value=1.3e+02 Score=24.22 Aligned_cols=51 Identities=18% Similarity=0.123 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhc--CCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034303 24 GSLWLSGIAGSIAYNWS--QPG-MKTSVKIIHARLHAQALTLAALAGAAVVEYY 74 (98)
Q Consensus 24 g~~W~~sm~gs~a~~~r--~~~-~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~ 74 (98)
|.++.....++..|..+ .+. ..+.|-+..+=..+=|..++.+++|..++.+
T Consensus 312 G~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~ 365 (400)
T PF03825_consen 312 GLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAF 365 (400)
T ss_pred hHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 55666666777777776 233 4588999999999999999999999888876
No 16
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=38.08 E-value=51 Score=19.73 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=14.0
Q ss_pred HHHHhCchhhhHHHHHHH
Q 034303 13 EWVVQNKLRTVGSLWLSG 30 (98)
Q Consensus 13 ~~~~en~y~~ig~~W~~s 30 (98)
++.++||++++|+.--..
T Consensus 2 e~~~~~~~~iiG~~~G~i 19 (51)
T PF10031_consen 2 EFWKNHRGKIIGGLIGLI 19 (51)
T ss_pred hHHHHCcchHHHHHHHHH
Confidence 678999999999873333
No 17
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=37.63 E-value=10 Score=34.50 Aligned_cols=46 Identities=17% Similarity=0.388 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHH
Q 034303 7 KLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTL 62 (98)
Q Consensus 7 ~~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~r~~~~~~sqklvqaRvyAQg~Tv 62 (98)
..+|+.+++.+++|.+|||+|+ --+.++...--|++-=..+|-|-+
T Consensus 343 ~f~kl~e~~~q~qF~pvGGtWV----------E~DtNiPsGEslvRQFl~GQ~FFl 388 (1078)
T KOG4342|consen 343 LFSKLQEFACQGQFVPVGGTWV----------EMDTNIPSGESLVRQFLQGQNFFL 388 (1078)
T ss_pred HHHHHHHHHhcCceeeccceEE----------ecCCCCCChHHHHHHHHhhhhHHH
Confidence 4689999999999999999964 446667766666666666665543
No 18
>COG5395 Predicted membrane protein [Function unknown]
Probab=37.26 E-value=54 Score=23.44 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=27.2
Q ss_pred CchhhhHHHHHHHHHHHH--HHHhcCCCchhhHHHHHHHHHHHHHH
Q 034303 18 NKLRTVGSLWLSGIAGSI--AYNWSQPGMKTSVKIIHARLHAQALT 61 (98)
Q Consensus 18 n~y~~ig~~W~~sm~gs~--a~~~r~~~~~~sqklvqaRvyAQg~T 61 (98)
-+|+||=.+-...+.|++ .|-.|++.++.-.|+|| +||--|+.
T Consensus 68 g~FSpIHLLSi~~i~g~~~aV~aar~G~i~~HRr~mq-~~ylgGll 112 (131)
T COG5395 68 GGFSPIHLLSIFTIIGLPRAVYAARRGKISAHRRIMQ-GVYLGGLL 112 (131)
T ss_pred cCcChHHHHHHHHHHhhHHHHHHHHcccHHHHHHHHH-hhhhhheh
Confidence 357777766666666666 56667777777777765 34444433
No 19
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=36.92 E-value=1.8e+02 Score=21.78 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=36.0
Q ss_pred HhCchhhhHHHHHHHHHHHHHHHhcCCC----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034303 16 VQNKLRTVGSLWLSGIAGSIAYNWSQPG----MKTSVKIIHARLHAQALTLAALAGAAVVEYYDH 76 (98)
Q Consensus 16 ~en~y~~ig~~W~~sm~gs~a~~~r~~~----~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~ 76 (98)
+=||+-.+.+.-.. .|-.....|.+. .+..+|.+|+=+.+=+++++++...+++...++
T Consensus 36 n~HP~lMv~Gfi~L--~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~ 98 (179)
T cd08762 36 NWHPVLMVTGMVVL--YGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNV 98 (179)
T ss_pred eehHHHHHHHHHHH--HHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34565555444333 333344444332 456789999998888888877777766655544
No 20
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=35.95 E-value=43 Score=22.75 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Q 034303 22 TVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQA 59 (98)
Q Consensus 22 ~ig~~W~~sm~gs~a~~~r~~~~~~sqklvqaRvyAQg 59 (98)
=|.|.|+.|++.-+-++.|=-++.+-..+.=|-+.|-+
T Consensus 12 DitG~wv~~lG~wfHIvarLV~~~P~mA~~LAeiia~~ 49 (93)
T PF09679_consen 12 DITGMWVFSLGFWFHIVARLVYRQPEMAFFLAEIIAVG 49 (93)
T ss_pred CCccchhhHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 38899999998887666653333333333333343333
No 21
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=35.49 E-value=2e+02 Score=21.94 Aligned_cols=61 Identities=25% Similarity=0.189 Sum_probs=33.3
Q ss_pred hCchhhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034303 17 QNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHK 77 (98)
Q Consensus 17 en~y~~ig~~W~~sm~gs~a~~~r~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~~ 77 (98)
=||+-.+.+.-...-=+...|..-+...+..+|++|+=+.+=++.+++...-+++...++.
T Consensus 26 ~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~ 86 (214)
T cd08764 26 WHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLA 86 (214)
T ss_pred ecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3555444444332223333333223234556788998888777777766655555554443
No 22
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=34.19 E-value=13 Score=26.27 Aligned_cols=31 Identities=16% Similarity=-0.008 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCchhhHHHHHH
Q 034303 23 VGSLWLSGIAGSIAYNWSQPGMKTSVKIIHA 53 (98)
Q Consensus 23 ig~~W~~sm~gs~a~~~r~~~~~~sqklvqa 53 (98)
+..+.+.-+.|||.+.+|+++-+--+|.+++
T Consensus 33 ~VILgiLLliGCWYckRRSGYk~L~~k~~~~ 63 (118)
T PF14991_consen 33 IVILGILLLIGCWYCKRRSGYKTLRDKSLHA 63 (118)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHhheeeeecchhhhhhhccccc
Confidence 4556677889999999999987766666554
No 23
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=31.97 E-value=29 Score=27.76 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCchhhhHHHHHHHHHHHHHHH
Q 034303 8 LESVREWVVQNKLRTVGSLWLSGIAGSIAYN 38 (98)
Q Consensus 8 ~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~ 38 (98)
..++.+|+++|..+++|..|.+-+++...+.
T Consensus 124 l~~i~~w~~~~~~s~LgICwGaQa~a~algG 154 (302)
T PRK05368 124 LKEILDWAKTHVTSTLFICWAAQAALYHLYG 154 (302)
T ss_pred HHHHHHHHHHcCCCEEEEcHHHHHHHHHcCC
Confidence 7899999999999999999999988877666
No 24
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=31.94 E-value=1.9e+02 Score=20.57 Aligned_cols=53 Identities=28% Similarity=0.252 Sum_probs=26.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 034303 18 NKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAV 70 (98)
Q Consensus 18 n~y~~ig~~W~~sm~gs~a~~~r~~~~~~sqklvqaRvyAQg~Tva~L~~~~~ 70 (98)
||+-.+.+.=...--+...|.--++..+..+|++|+=+.+=++.++++...+.
T Consensus 10 HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av 62 (143)
T cd08763 10 HPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAV 62 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444432222233444322334556677777777666555555444433
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=31.05 E-value=42 Score=28.15 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=20.8
Q ss_pred cccccHHHHHHHHHHhCchhhhHHHHHH
Q 034303 2 AEHKSKLESVREWVVQNKLRTVGSLWLS 29 (98)
Q Consensus 2 ~~~~S~~ek~~~~~~en~y~~ig~~W~~ 29 (98)
..+.|.++++..|+.+||-.++..+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (615)
T TIGR00990 17 PADSSIWDRMSNWISENKTAVYTIAGVT 44 (615)
T ss_pred CCCchHHHHHHHHHHhcchHhhhhhhhH
Confidence 3445689999999999998777543333
No 26
>COG4854 Predicted membrane protein [Function unknown]
Probab=29.18 E-value=73 Score=22.72 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=31.9
Q ss_pred HhCchhhhHHHHHHHHHHHH--HHHhcCCCchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCchhhhhhcC
Q 034303 16 VQNKLRTVGSLWLSGIAGSI--AYNWSQPGMKTSVKIIHARLHAQALTLAA-LAGAAVVEYYDHKSGSKTERYAKFL 89 (98)
Q Consensus 16 ~en~y~~ig~~W~~sm~gs~--a~~~r~~~~~~sqklvqaRvyAQg~Tva~-L~~~~~~~~~~~~~g~~~~~~~~~~ 89 (98)
+.++|..++.+=+..++... ++..-|+.+ +|.+ +.|.++++.++++- +++-|-||.+
T Consensus 3 ~~mr~~~~l~~ivm~~GA~~g~a~~sGn~~i----------------av~af~ag~~~l~l~k~Rv-~~vvEDER~l 62 (126)
T COG4854 3 KRMRYTKILFAIVMAVGAAVGYAVESGNWFI----------------AVIAFFAGAALLSLVKRRV-DEVVEDERTL 62 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHheeecCCCeeh----------------HHHHHHHHHHHHHHHHHHH-HHHhhhHHHH
Confidence 45778888877666666654 555556633 4444 44444566665553 3344555533
No 27
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=28.16 E-value=33 Score=27.57 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCchhhhHHHHHHHHHHHHHHHhc
Q 034303 8 LESVREWVVQNKLRTVGSLWLSGIAGSIAYNWS 40 (98)
Q Consensus 8 ~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~r 40 (98)
..++++|+++|.++.+...|++-.+.+..|.-.
T Consensus 123 l~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~ 155 (298)
T PF04204_consen 123 LTEIFDWAKTHVTSTLFICWGAQAALYHFYGIP 155 (298)
T ss_dssp HHHHHHHHHHHEEEEEEETHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCC
Confidence 578999999999999999999988887766544
No 28
>PLN02810 carbon-monoxide oxygenase
Probab=28.10 E-value=2.8e+02 Score=21.64 Aligned_cols=57 Identities=26% Similarity=0.262 Sum_probs=34.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034303 18 NKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYD 75 (98)
Q Consensus 18 n~y~~ig~~W~~sm~gs~a~~~r~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~ 75 (98)
||+-.+.+.=...-=++..|.. -+..+..+|++|+=+.+=++.++++...+.+...+
T Consensus 50 HPvlMv~Gfi~l~geAIL~Yr~-~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn 106 (231)
T PLN02810 50 HPVLMLIGLIIIGGEAIMSYKS-LPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHN 106 (231)
T ss_pred hHHHHHHHHHHHhhHHHHHhhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555444443333333344431 22246789999999988888888877776665443
No 29
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=27.90 E-value=2.3e+02 Score=21.31 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHH
Q 034303 23 VGSLWLSGIAGSI 35 (98)
Q Consensus 23 ig~~W~~sm~gs~ 35 (98)
+.|+-++++.|.+
T Consensus 16 llg~~iGg~~G~~ 28 (248)
T PF11368_consen 16 LLGGLIGGFIGFF 28 (248)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444455544
No 30
>PF13219 DUF4027: Protein of unknown function (DUF4027)
Probab=27.56 E-value=12 Score=21.38 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034303 49 KIIHARLHAQALTLAALAGAAVVEY 73 (98)
Q Consensus 49 klvqaRvyAQg~Tva~L~~~~~~~~ 73 (98)
|-.|.-.|-|+.||.+|.|-++...
T Consensus 2 K~~QnL~ysq~Vsl~CLGGf~~~~~ 26 (36)
T PF13219_consen 2 KEFQNLSYSQGVSLICLGGFALSVT 26 (36)
T ss_pred cchhhhhhhhCeeEEecchHHHHHH
Confidence 4456778999999998887765543
No 31
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=27.34 E-value=38 Score=30.37 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034303 28 LSGIAGSIAYNWS-QPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDH 76 (98)
Q Consensus 28 ~~sm~gs~a~~~r-~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~ 76 (98)
+++++|||+|... =-.+-.+--|++.|..|-.+-.++|+++.+-...+.
T Consensus 2 L~~lGGS~YY~~aG~~ll~~~~ll~~~~~~a~~lya~~~~~t~~Wa~~E~ 51 (764)
T TIGR03074 2 LVALGGSWYYLLAGLALLLSAWLLFRRRPAGLWLYAALLLGTLIWALWEV 51 (764)
T ss_pred eeecCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444433 222445667777787777777788888877766654
No 32
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=26.52 E-value=67 Score=20.36 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 034303 62 LAALAGAAVVEYYD 75 (98)
Q Consensus 62 va~L~~~~~~~~~~ 75 (98)
+.+|++|++.-.|-
T Consensus 4 ilali~G~~~Gff~ 17 (64)
T PF03672_consen 4 ILALIVGAVIGFFI 17 (64)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 33
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=26.18 E-value=77 Score=21.29 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCCC
Q 034303 59 ALTLAALAGAAVVEYYDHKSGSKTERYAKFLPADP 93 (98)
Q Consensus 59 g~Tva~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 93 (98)
++.++++.+..+|-.|.+..-+....|-..++.|+
T Consensus 41 ~~Gl~a~~~c~gYi~Ym~~~~en~~~~Y~av~sdg 75 (86)
T PF14937_consen 41 AFGLIAITLCVGYIAYMHATYENKKDYYEAVDSDG 75 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhccCC
Confidence 56666666666666666553332223444444444
No 34
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=25.73 E-value=1.5e+02 Score=21.70 Aligned_cols=29 Identities=17% Similarity=-0.035 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCchhhhHHHHHHHHHHHHH
Q 034303 8 LESVREWVVQNKLRTVGSLWLSGIAGSIA 36 (98)
Q Consensus 8 ~ek~~~~~~en~y~~ig~~W~~sm~gs~a 36 (98)
...+++.+..|.+.++++++++++++..+
T Consensus 10 l~~l~~~l~r~~~~ill~~ll~~~~a~~~ 38 (226)
T TIGR01006 10 LLQLLKKLWKRKLLILIVALIFLIISFIY 38 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999887777654
No 35
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=25.57 E-value=2.2e+02 Score=19.31 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchhhhhh
Q 034303 59 ALTLAALAGAAVVEYYDHKSGSKTERYAK 87 (98)
Q Consensus 59 g~Tva~L~~~~~~~~~~~~~g~~~~~~~~ 87 (98)
.+.+.+.+.++++.++-+++=++.-+-||
T Consensus 28 ~la~i~~~~g~~~~~~~~~~v~~v~eDER 56 (111)
T PF09946_consen 28 LLAVIVFLAGILLVYLYRRRVEDVVEDER 56 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhHH
Confidence 34445555555555555554443333333
No 36
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=25.22 E-value=2.8e+02 Score=20.38 Aligned_cols=60 Identities=15% Similarity=0.276 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhh
Q 034303 23 VGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSGSKTERY 85 (98)
Q Consensus 23 ig~~W~~sm~gs~a~~~r~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~~~g~~~~~~ 85 (98)
-...|.+++.++.++-+.+ +.=..-+++-|||=..-+.+++.=..+...++...+..++|
T Consensus 78 ~~~~~~a~lv~al~fafS~---sfW~~Av~aEVYal~~l~~al~~~l~l~w~~~~~~~~~~r~ 137 (178)
T PF11028_consen 78 TIAILGAGLVGALAFAFSD---SFWFQAVEAEVYALSSLFTALLLWLLLKWEREADEPRSDRW 137 (178)
T ss_pred HHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchH
Confidence 3445667777777777664 45567889999998777777776666766665443333333
No 37
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=24.40 E-value=1e+02 Score=25.45 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=25.1
Q ss_pred HHHHHHHhCchhhhHHHHHHHHHHHHHHHh
Q 034303 10 SVREWVVQNKLRTVGSLWLSGIAGSIAYNW 39 (98)
Q Consensus 10 k~~~~~~en~y~~ig~~W~~sm~gs~a~~~ 39 (98)
....+|-||||+.-|.+-+-||.|+...++
T Consensus 247 ~a~~fcaehp~~tyGy~~~~s~~gylG~~~ 276 (367)
T KOG1582|consen 247 SAWTFCAEHPVRTYGYAFLFSLAGYLGIVF 276 (367)
T ss_pred hhhHHHHhCcHhHHHHHHHHHHHhHhhHHH
Confidence 456789999999999999999998875543
No 38
>PF02238 COX7a: Cytochrome c oxidase subunit VIIa; InterPro: IPR003177 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. This family is composed of the heart and liver isoforms of cytochrome c oxidase subunit VIIa. ; GO: 0004129 cytochrome-c oxidase activity, 0009055 electron carrier activity, 0005746 mitochondrial respiratory chain; PDB: 2DYS_J 3AG3_W 3AG1_J 1OCC_J 3ABL_J 3AG4_J 3ABM_J 2EIL_W 3AG2_W 2EIM_W ....
Probab=23.68 E-value=1.9e+02 Score=17.79 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 034303 60 LTLAALAGAAVVEYY 74 (98)
Q Consensus 60 ~Tva~L~~~~~~~~~ 74 (98)
+|+++-+++.++.+|
T Consensus 32 ~Tm~L~~~gt~~~l~ 46 (56)
T PF02238_consen 32 VTMPLTVAGTSYCLY 46 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555555555
No 39
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=23.67 E-value=91 Score=27.72 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034303 23 VGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEY 73 (98)
Q Consensus 23 ig~~W~~sm~gs~a~~~r~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~ 73 (98)
.+..|++.+ .|.-...-.+-..+.|.++|.--++-|..+++|+|+..++.
T Consensus 473 ~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~ 522 (618)
T KOG3762|consen 473 HALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER 522 (618)
T ss_pred HHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence 345555432 22222333333457799999777776766666666664443
No 40
>PRK00523 hypothetical protein; Provisional
Probab=23.59 E-value=95 Score=20.19 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034303 59 ALTLAALAGAAVVEYYDH 76 (98)
Q Consensus 59 g~Tva~L~~~~~~~~~~~ 76 (98)
++.+.+|++|++.-.|-.
T Consensus 9 ~l~i~~li~G~~~Gffia 26 (72)
T PRK00523 9 GLGIPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555666655544443
No 41
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=23.44 E-value=1.4e+02 Score=19.27 Aligned_cols=28 Identities=7% Similarity=-0.062 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034303 51 IHARLHAQALTLAALAGAAVVEYYDHKS 78 (98)
Q Consensus 51 vqaRvyAQg~Tva~L~~~~~~~~~~~~~ 78 (98)
.+-=+.|||..+.-++-...|...+++.
T Consensus 42 lgfw~aaQGsi~~fviLi~~Ya~~m~rl 69 (77)
T TIGR03647 42 LGFWFAQQGSIYVFVVLIFVYAWRMNRL 69 (77)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999888888888777763
No 42
>PF07296 TraP: TraP protein; InterPro: IPR009913 This family consists of several bacterial conjugative transfer TraP proteins from Escherichia coli and Salmonella typhimurium. TraP appears to play a minor role in conjugation and may interact with TraB, which varies in sequence along with TraP, in order to stabilise the proposed transmembrane complex formed by the tra operon products [].
Probab=22.80 E-value=2.4e+02 Score=21.74 Aligned_cols=31 Identities=3% Similarity=-0.034 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Q 034303 29 SGIAGSIAYNWSQPGMKTSVKIIHARLHAQA 59 (98)
Q Consensus 29 ~sm~gs~a~~~r~~~~~~sqklvqaRvyAQg 59 (98)
+.|...-+++++..+.+..|-++|---..+.
T Consensus 38 ATmaLmalfVlwkdnTTPGkllVqeI~~V~~ 68 (202)
T PF07296_consen 38 ATMALMALFVLWKDNTTPGKLLVQEIEFVRQ 68 (202)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 4555556677776667888888886555443
No 43
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=22.78 E-value=2.6e+02 Score=19.03 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhc--CCchhhhhhc
Q 034303 20 LRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIH-ARLHAQALTLAALAGAAVVEYYDHKS--GSKTERYAKF 88 (98)
Q Consensus 20 y~~ig~~W~~sm~gs~a~~~r~~~~~~sqklvq-aRvyAQg~Tva~L~~~~~~~~~~~~~--g~~~~~~~~~ 88 (98)
+..|+|.-+......++++-=.|+-+++-+..+ .-+-+=-+.+.+++|...|+||-++= ++...+.+|.
T Consensus 13 ~vli~GiiLL~~aCIfAfidfsK~~~~~~~~wRalSii~FI~giil~lG~~i~s~ygr~C~~s~~~~~~~R~ 84 (92)
T PF05767_consen 13 GVLIGGIILLIAACIFAFIDFSKNTKPTDYTWRALSIICFILGIILTLGIVIFSMYGRYCRPSSKVIDNGRY 84 (92)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCccccc
Confidence 566777777777778888754443333332222 23445556667778888888887764 3455555554
No 44
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=22.75 E-value=1.2e+02 Score=24.68 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHhcCCCchhhHHH
Q 034303 7 KLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKI 50 (98)
Q Consensus 7 ~~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~r~~~~~~sqkl 50 (98)
...++++|.+.|=++.+-..|.+-.+.+..|.--+ .+..+|+
T Consensus 123 el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K--~~l~~Kl 164 (307)
T COG1897 123 ELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPK--YTLPEKL 164 (307)
T ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCc--cccchhh
Confidence 36789999999999999999998877766654432 3444554
No 45
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=21.95 E-value=1.8e+02 Score=17.04 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=24.5
Q ss_pred ccHHHHHHHHH---HhCchhhhHHHHHHHHHHHHHHHhc
Q 034303 5 KSKLESVREWV---VQNKLRTVGSLWLSGIAGSIAYNWS 40 (98)
Q Consensus 5 ~S~~ek~~~~~---~en~y~~ig~~W~~sm~gs~a~~~r 40 (98)
||+.|.+..-+ .--|..+++|.-+.++..+|.++..
T Consensus 1 MStlEsviWhvLGY~AmPvI~L~GF~~Vav~~~~lL~~~ 39 (42)
T PF09574_consen 1 MSTLESVIWHVLGYAAMPVIILSGFAAVAVASIWLLSLT 39 (42)
T ss_pred CchHHHHHHHHhccccchHHHHhhHHHHHHHHHHHHHhh
Confidence 46667766655 2457777787777777778877654
No 46
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=21.56 E-value=1.6e+02 Score=19.23 Aligned_cols=56 Identities=9% Similarity=-0.035 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034303 23 VGSLWLSGIAGSIAYNWSQPG-MKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKS 78 (98)
Q Consensus 23 ig~~W~~sm~gs~a~~~r~~~-~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~~~ 78 (98)
+...|+....+.+.+-.+.-+ .+..--=.+-=+.|||..++-++--..|...+++.
T Consensus 17 lL~iW~vvsfg~~~lfa~~Ln~~~~~GfPlgfw~aaQGsi~~fviLi~~Ya~~mnrl 73 (81)
T PF13937_consen 17 LLAIWFVVSFGVGILFADELNQITFGGFPLGFWFAAQGSIIVFVILIFVYAWRMNRL 73 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345677665555333222110 22111224556789999998888888887777663
No 47
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=21.30 E-value=3e+02 Score=21.72 Aligned_cols=61 Identities=10% Similarity=-0.113 Sum_probs=33.0
Q ss_pred HhCchhhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034303 16 VQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDH 76 (98)
Q Consensus 16 ~en~y~~ig~~W~~sm~gs~a~~~r~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~ 76 (98)
.+-+.-++.|.-...+...|.+..+++..+....-.+.+..--++.+..+..++.+|.+|=
T Consensus 174 YNM~~nv~~G~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~lam~LEl~DF 234 (267)
T PF04080_consen 174 YNMKANVAVGLLQNILWLLWSFRNYRRYPSVKKSYSKRWKLWPILFVVLTILAMSLELFDF 234 (267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444444444555555666665543332111123333334577888888889998874
No 48
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=21.26 E-value=93 Score=20.36 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=19.3
Q ss_pred CcccccHHHHHHHHHHhCchhhhHHH
Q 034303 1 MAEHKSKLESVREWVVQNKLRTVGSL 26 (98)
Q Consensus 1 ~~~~~S~~ek~~~~~~en~y~~ig~~ 26 (98)
|-+..+-.+.+..|+.++||-.+..+
T Consensus 1 m~D~k~w~~~~v~~vAkdP~~Fl~~v 26 (74)
T PF15086_consen 1 MIDVKAWASYIVEWVAKDPYEFLTTV 26 (74)
T ss_pred CcchHHHHHHHHHHHHcChHHHHHHH
Confidence 34445567788999999999887654
No 49
>PRK01844 hypothetical protein; Provisional
Probab=20.99 E-value=1.1e+02 Score=19.85 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034303 60 LTLAALAGAAVVEYYDH 76 (98)
Q Consensus 60 ~Tva~L~~~~~~~~~~~ 76 (98)
+.+.+|++|++.-.|-.
T Consensus 9 l~I~~li~G~~~Gff~a 25 (72)
T PRK01844 9 VGVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555554444433
No 50
>PF08684 ocr: DNA mimic ocr; InterPro: IPR014798 The structure of an Ocr protein from bacteriophage T7 has shown that this protein mimics the size and shape of a bent DNA molecule []. Ocr has also been shown to be an inhibitor of the complex type I DNA restriction enzymes []. ; PDB: 1S7Z_A 2Y7C_E.
Probab=20.91 E-value=82 Score=21.63 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=12.1
Q ss_pred CchhhHHHHHHHHHHHH
Q 034303 43 GMKTSVKIIHARLHAQA 59 (98)
Q Consensus 43 ~~~~sqklvqaRvyAQg 59 (98)
-.+---+|.|+|+|-|-
T Consensus 72 dtkDV~~IlqaRIyE~L 88 (101)
T PF08684_consen 72 DTKDVTRILQARIYEQL 88 (101)
T ss_dssp --S-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 34566899999999984
Done!