Query 034303
Match_columns 98
No_of_seqs 101 out of 203
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 20:41:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lon_A HIG1 domain family memb 99.8 8.9E-24 3E-28 143.2 0.0 77 4-80 14-91 (99)
2 2lom_A HIG1 domain family memb 99.8 1.1E-23 3.7E-28 141.4 0.0 77 3-79 12-89 (93)
3 1s7z_A Gene 0.3 protein; all h 22.1 49 0.0017 22.2 2.1 19 42-60 73-91 (117)
4 3mkl_A HTH-type transcriptiona 16.1 1.4E+02 0.0049 18.3 3.2 86 4-89 5-108 (120)
5 2ckc_A Chromodomain-helicase-D 14.3 86 0.0029 19.9 1.7 13 7-19 45-57 (80)
6 3oio_A Transcriptional regulat 13.8 1.7E+02 0.0058 17.7 3.1 54 3-56 4-62 (113)
7 2ks1_B Epidermal growth factor 13.8 1.8E+02 0.0062 16.1 2.9 16 25-40 21-36 (44)
8 1wi9_A Protein C20ORF116 homol 13.0 1.1E+02 0.0038 18.9 2.0 24 3-26 4-27 (72)
9 4gc0_A D-xylose-proton symport 12.3 2.4E+02 0.0081 20.5 4.0 26 72-97 461-486 (491)
10 3oou_A LIN2118 protein; protei 12.0 1.9E+02 0.0064 17.3 2.9 53 4-56 3-60 (108)
No 1
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=99.78 E-value=8.9e-24 Score=143.18 Aligned_cols=77 Identities=22% Similarity=0.198 Sum_probs=72.1
Q ss_pred cccHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 034303 4 HKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWS-QPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSGS 80 (98)
Q Consensus 4 ~~S~~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~r-~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~~~g~ 80 (98)
++|..||+.++++||||+||||+++++++.+++|.++ ++..++|||+||+||+|||+||++|+++++|+||+++--+
T Consensus 14 ees~~~K~~rk~ke~PlvpIg~l~~~~vl~~Gl~~~~~rG~~~~Sqklmr~RV~AQg~tV~al~~g~~ysm~~~~~~~ 91 (99)
T 2lon_A 14 EDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAVGAIMLGAVYTMYSDYVKR 91 (99)
Confidence 4899999999999999999999999999999999995 7789999999999999999999999999999999988654
No 2
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-23 Score=141.37 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=71.8
Q ss_pred ccccHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 034303 3 EHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWS-QPGMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHKSG 79 (98)
Q Consensus 3 ~~~S~~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~~r-~~~~~~sqklvqaRvyAQg~Tva~L~~~~~~~~~~~~~g 79 (98)
++||..||+.++++||||+||||+++++++++++|.++ ++..++|||+||+||+|||+||++|+++++|+||+++-.
T Consensus 12 ~~e~~~~K~~rk~ke~PlvpIg~~~~~~vl~~Gl~~~~~rG~~~~sqklmr~RV~aQg~tV~al~~g~~ys~~~~~~~ 89 (93)
T 2lom_A 12 YEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYSMYREFWA 89 (93)
Confidence 35899999999999999999999999999999999988 677999999999999999999999999999999998754
No 3
>1s7z_A Gene 0.3 protein; all helical, gene regulation; 1.83A {Enterobacteria phage T7} SCOP: a.159.3.1 PDB: 2y7c_D
Probab=22.07 E-value=49 Score=22.24 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=14.6
Q ss_pred CCchhhHHHHHHHHHHHHH
Q 034303 42 PGMKTSVKIIHARLHAQAL 60 (98)
Q Consensus 42 ~~~~~sqklvqaRvyAQg~ 60 (98)
|..+---+|.|+|+|-|-.
T Consensus 73 pdtkDV~~ILqaRIyE~L~ 91 (117)
T 1s7z_A 73 PDTKDVIRILQARIYEQLT 91 (117)
T ss_dssp CCCSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 3345678999999999853
No 4
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=16.11 E-value=1.4e+02 Score=18.30 Aligned_cols=86 Identities=8% Similarity=0.036 Sum_probs=53.4
Q ss_pred cccHHHHHHHHHHhCchhhhHHHHHHHHHHH----HHHHhcCCCchhhHHHHHHHHHHH-------HHHHHHHHH-----
Q 034303 4 HKSKLESVREWVVQNKLRTVGSLWLSGIAGS----IAYNWSQPGMKTSVKIIHARLHAQ-------ALTLAALAG----- 67 (98)
Q Consensus 4 ~~S~~ek~~~~~~en~y~~ig~~W~~sm~gs----~a~~~r~~~~~~sqklvqaRvyAQ-------g~Tva~L~~----- 67 (98)
+.+..+++.+++.+|.-..+...-++..++. +--.++.-.++..+.+.+.||-.= ..+|.-+..
T Consensus 5 ~~~~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~G~s~~~~~~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~ 84 (120)
T 3mkl_A 5 QPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYH 84 (120)
T ss_dssp CCCHHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHTTCS
T ss_pred cHHHHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCC
Confidence 4567899999999998877777666665543 222233236888888888887531 112222222
Q ss_pred --HHHHHHHHhhcCCchhhhhhcC
Q 034303 68 --AAVVEYYDHKSGSKTERYAKFL 89 (98)
Q Consensus 68 --~~~~~~~~~~~g~~~~~~~~~~ 89 (98)
+-....|.+..|-..-+|.+..
T Consensus 85 ~~s~F~r~Fk~~~G~tP~~yr~~~ 108 (120)
T 3mkl_A 85 SVSYFIYVFRNYYGMTPTEYQERS 108 (120)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHC
T ss_pred CHHHHHHHHHHHHCcCHHHHHHHH
Confidence 2245566777787666777643
No 5
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=14.30 E-value=86 Score=19.87 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhCc
Q 034303 7 KLESVREWVVQNK 19 (98)
Q Consensus 7 ~~ek~~~~~~en~ 19 (98)
....+.+|+++||
T Consensus 45 ~~KdL~dWLrqhP 57 (80)
T 2ckc_A 45 KNKDLVEWLKLHP 57 (80)
T ss_dssp BHHHHHHHHHHCT
T ss_pred cccCHHHHHHHCC
Confidence 4678999999998
No 6
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=13.82 E-value=1.7e+02 Score=17.67 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=38.0
Q ss_pred ccccHHHHHHHHHHhCchhhhHHHHHHHHHHH----HHHHhc-CCCchhhHHHHHHHHH
Q 034303 3 EHKSKLESVREWVVQNKLRTVGSLWLSGIAGS----IAYNWS-QPGMKTSVKIIHARLH 56 (98)
Q Consensus 3 ~~~S~~ek~~~~~~en~y~~ig~~W~~sm~gs----~a~~~r-~~~~~~sqklvqaRvy 56 (98)
.+....+++.+++.+|.-..+....++..++. +--.++ .-.++..+.+.+.||-
T Consensus 4 ~~~~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~ 62 (113)
T 3oio_A 4 GSQPKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLN 62 (113)
T ss_dssp GGCHHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34567899999999998887777777766653 222233 2357888888888875
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=13.76 E-value=1.8e+02 Score=16.08 Aligned_cols=16 Identities=25% Similarity=0.034 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHhc
Q 034303 25 SLWLSGIAGSIAYNWS 40 (98)
Q Consensus 25 ~~W~~sm~gs~a~~~r 40 (98)
.+-++.+++.+.+..|
T Consensus 21 v~~~~ii~~~~~~~~R 36 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333444444433333
No 8
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=12.98 E-value=1.1e+02 Score=18.88 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=20.6
Q ss_pred ccccHHHHHHHHHHhCchhhhHHH
Q 034303 3 EHKSKLESVREWVVQNKLRTVGSL 26 (98)
Q Consensus 3 ~~~S~~ek~~~~~~en~y~~ig~~ 26 (98)
++++..+.+.++.++||-.++--+
T Consensus 4 ~~~~ll~~Fi~yIk~~Kvv~LedL 27 (72)
T 1wi9_A 4 GSSGFLTEFINYIKKSKVVLLEDL 27 (72)
T ss_dssp SSCCHHHHHHHHHHHCSEECHHHH
T ss_pred hHHHHHHHHHHHHHHcCeeeHHHH
Confidence 467889999999999999988754
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=12.32 E-value=2.4e+02 Score=20.55 Aligned_cols=26 Identities=8% Similarity=0.217 Sum_probs=14.4
Q ss_pred HHHHhhcCCchhhhhhcCCCCCCCCC
Q 034303 72 EYYDHKSGSKTERYAKFLPADPYAHK 97 (98)
Q Consensus 72 ~~~~~~~g~~~~~~~~~~~~~~~~~~ 97 (98)
-...|-+|+.++|=++.-+++.+++|
T Consensus 461 ~~~PETkg~tLeei~~~f~~~~~~~~ 486 (491)
T 4gc0_A 461 KFVPETKGKTLEELEALWEPETKKTQ 486 (491)
T ss_dssp HHCCCCTTCCHHHHGGGTC-------
T ss_pred heecCCCCCCHHHHHHHhCCCCcccc
Confidence 34567799998888777776665554
No 10
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=11.97 E-value=1.9e+02 Score=17.30 Aligned_cols=53 Identities=8% Similarity=0.056 Sum_probs=36.6
Q ss_pred cccHHHHHHHHHHhCchhhhHHHHHHHHHHH----HHHHhcCC-CchhhHHHHHHHHH
Q 034303 4 HKSKLESVREWVVQNKLRTVGSLWLSGIAGS----IAYNWSQP-GMKTSVKIIHARLH 56 (98)
Q Consensus 4 ~~S~~ek~~~~~~en~y~~ig~~W~~sm~gs----~a~~~r~~-~~~~sqklvqaRvy 56 (98)
+....+++.+++.+|.-..+....++...+. +--.++.- .++..+.+.+.||-
T Consensus 3 ~~~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~ 60 (108)
T 3oou_A 3 KSPIIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRVN 60 (108)
T ss_dssp -CCHHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4567899999999998777777777776654 22223322 57888888887774
Done!