Query 034303
Match_columns 98
No_of_seqs 101 out of 203
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 20:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034303.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034303hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hjqa2 d.344.1.1 (A:1-49) Hyp 43.8 3.8 0.00028 22.1 1.0 16 8-23 28-43 (49)
2 d1r8ea2 d.60.1.1 (A:121-277) M 24.0 10 0.00076 23.5 0.7 21 5-25 110-130 (157)
3 d1s7za_ a.159.3.1 (A:) B-form 23.2 22 0.0016 22.1 2.1 19 42-60 68-86 (106)
4 d1sh5a2 a.40.1.1 (A:128-237) A 21.7 25 0.0018 21.1 2.2 43 2-44 2-51 (110)
5 d2bw3a1 a.270.1.1 (A:79-162) T 17.2 87 0.0064 18.4 3.9 29 7-35 16-46 (84)
6 d2ckca1 d.76.2.1 (A:2563-2622) 16.1 35 0.0026 18.9 1.8 14 7-20 25-38 (60)
7 d2ghra1 c.23.16.8 (A:17-297) H 15.3 27 0.002 24.4 1.3 31 8-38 108-138 (281)
8 d1fs1b2 d.42.1.1 (B:2-68) Cycl 14.8 30 0.0022 18.6 1.2 14 6-19 46-59 (61)
9 d2ckaa1 d.76.2.1 (A:2028-2085) 12.9 49 0.0036 18.2 1.8 24 7-30 27-50 (58)
10 d1nexa2 d.42.1.1 (A:4-103) Cen 11.8 48 0.0035 18.2 1.5 15 6-20 54-68 (72)
No 1
>d2hjqa2 d.344.1.1 (A:1-49) Hypothetical protein YqbF {Bacillus subtilis [TaxId: 1423]}
Probab=43.77 E-value=3.8 Score=22.12 Aligned_cols=16 Identities=13% Similarity=0.193 Sum_probs=13.7
Q ss_pred HHHHHHHHHhCchhhh
Q 034303 8 LESVREWVVQNKLRTV 23 (98)
Q Consensus 8 ~ek~~~~~~en~y~~i 23 (98)
-.|+-+++.||||-|+
T Consensus 28 pkklyeylnenpyfil 43 (49)
T d2hjqa2 28 PKKLYEYLNENPYFIL 43 (49)
T ss_dssp CHHHHHHHHHSTTEEE
T ss_pred cHHHHHHhcCCCeEEe
Confidence 4689999999999875
No 2
>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=23.98 E-value=10 Score=23.49 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=17.4
Q ss_pred ccHHHHHHHHHHhCchhhhHH
Q 034303 5 KSKLESVREWVVQNKLRTVGS 25 (98)
Q Consensus 5 ~S~~ek~~~~~~en~y~~ig~ 25 (98)
....+++.+|+.+|.|.+.|-
T Consensus 110 ~~~y~~l~~~~~~~g~~~~g~ 130 (157)
T d1r8ea2 110 FLNLQKLIKYIADRQLTVVSD 130 (157)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHhcCcCcCCC
Confidence 356889999999999988663
No 3
>d1s7za_ a.159.3.1 (A:) B-form DNA mimic Ocr {Bacteriophage T7 [TaxId: 10760]}
Probab=23.17 E-value=22 Score=22.07 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=14.5
Q ss_pred CCchhhHHHHHHHHHHHHH
Q 034303 42 PGMKTSVKIIHARLHAQAL 60 (98)
Q Consensus 42 ~~~~~sqklvqaRvyAQg~ 60 (98)
|-.+---+|.|+|+|-|-.
T Consensus 68 pdtkDV~~ILqaRIyE~L~ 86 (106)
T d1s7za_ 68 PDTKDVIRILQARIYEQLT 86 (106)
T ss_dssp CCCSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 3345668999999999843
No 4
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.71 E-value=25 Score=21.05 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=32.7
Q ss_pred cccccHHHHHHHHHHh--Cchh-----hhHHHHHHHHHHHHHHHhcCCCc
Q 034303 2 AEHKSKLESVREWVVQ--NKLR-----TVGSLWLSGIAGSIAYNWSQPGM 44 (98)
Q Consensus 2 ~~~~S~~ek~~~~~~e--n~y~-----~ig~~W~~sm~gs~a~~~r~~~~ 44 (98)
+++.|..+.++.||++ .+|. =...+|-=+.+-+-.+..-+|.+
T Consensus 2 ~e~~s~k~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~afcaLih~~~P~~ 51 (110)
T d1sh5a2 2 SEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPML 51 (110)
T ss_dssp CSSCCHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTT
T ss_pred ccccCHHHHHHHHHHHHcCCCCCeeccCCcccccCcHHHHHHHHHHCccc
Confidence 4788999999999987 4563 23678988888888776666654
No 5
>d2bw3a1 a.270.1.1 (A:79-162) Transposase Hermes, dimerisation domain {House fly (Musca domestica) [TaxId: 7370]}
Probab=17.16 E-value=87 Score=18.44 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhC--chhhhHHHHHHHHHHHH
Q 034303 7 KLESVREWVVQN--KLRTVGSLWLSGIAGSI 35 (98)
Q Consensus 7 ~~ek~~~~~~en--~y~~ig~~W~~sm~gs~ 35 (98)
..+++..|+-+| ||.++-.+++-=++..|
T Consensus 16 ~~~a~~qW~V~nCRp~siv~dsGlkklv~~f 46 (84)
T d2bw3a1 16 AIEKCAQWVVRDCRPFSAVSGSGFIDMIKFF 46 (84)
T ss_dssp HHHHHHHHHHHTTCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccchhccccHHHHHHHH
Confidence 478889999887 89999988876666554
No 6
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.11 E-value=35 Score=18.95 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhCch
Q 034303 7 KLESVREWVVQNKL 20 (98)
Q Consensus 7 ~~ek~~~~~~en~y 20 (98)
....+.+|+++||=
T Consensus 25 ~~~~L~~WL~~hP~ 38 (60)
T d2ckca1 25 KNKDLVEWLKLHPT 38 (60)
T ss_dssp BHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHCCC
Confidence 46789999999984
No 7
>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}
Probab=15.29 E-value=27 Score=24.38 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCchhhhHHHHHHHHHHHHHHH
Q 034303 8 LESVREWVVQNKLRTVGSLWLSGIAGSIAYN 38 (98)
Q Consensus 8 ~ek~~~~~~en~y~~ig~~W~~sm~gs~a~~ 38 (98)
..++++|+++|..+++|..|.+=+++...+.
T Consensus 108 L~eii~~a~~~~~~~lgiCwGaQa~~~~lgG 138 (281)
T d2ghra1 108 LKRIMEYSKTNVTSTLHICWGAQAGLYHHYG 138 (281)
T ss_dssp HHHHHHHHHHHEEEEEEETHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCeEEEcHHHHHHHHHhCC
Confidence 5679999999999999999988766655543
No 8
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.84 E-value=30 Score=18.62 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=11.7
Q ss_pred cHHHHHHHHHHhCc
Q 034303 6 SKLESVREWVVQNK 19 (98)
Q Consensus 6 S~~ek~~~~~~en~ 19 (98)
...+|+.+||..|+
T Consensus 46 ~iL~kVieyc~~H~ 59 (61)
T d1fs1b2 46 AILKKVIQWCTHHK 59 (61)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcc
Confidence 45899999999886
No 9
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.92 E-value=49 Score=18.20 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCchhhhHHHHHHH
Q 034303 7 KLESVREWVVQNKLRTVGSLWLSG 30 (98)
Q Consensus 7 ~~ek~~~~~~en~y~~ig~~W~~s 30 (98)
..+.+.+|+.+||=--|.=-|+..
T Consensus 27 ~~~~L~~WL~~nP~y~V~P~~~~~ 50 (58)
T d2ckaa1 27 RRAELEMWLQGHPEFAVDPRFLAY 50 (58)
T ss_dssp BHHHHHHHHHHCTTEEECHHHHHH
T ss_pred CHHHHHHHHHHCCCCEEChhhhhh
Confidence 367899999999966665555544
No 10
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.83 E-value=48 Score=18.16 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=12.3
Q ss_pred cHHHHHHHHHHhCch
Q 034303 6 SKLESVREWVVQNKL 20 (98)
Q Consensus 6 S~~ek~~~~~~en~y 20 (98)
...+|+.+||.-|+-
T Consensus 54 ~iL~kVieyc~~H~~ 68 (72)
T d1nexa2 54 SVLQKVIEWAEHHRD 68 (72)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHccC
Confidence 468999999988874
Done!