BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034304
         (98 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LV66|Y5848_ARATH Uncharacterized protein At5g48480 OS=Arabidopsis thaliana
          GN=At5g48480 PE=1 SV=1
          Length = 166

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 6/56 (10%)

Query: 10 FMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFLS 65
          F   K  LLVEA K  DA+ FYK+AFGA+E    +  KRK ++EL      PH LS
Sbjct: 23 FTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQEL------PHVLS 72


>sp|P51735|VPH_BPHP1 Probable tail fiber protein OS=Haemophilus phage HP1 PE=4 SV=1
          Length = 925

 Score = 30.0 bits (66), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 22/94 (23%)

Query: 15  LQLLVEASKAIDAIQFYKTAFGAVEI---------------------SRIMETKRKAEKE 53
           L+L ++A    D +QF+  AFG VE                       +I E K+    E
Sbjct: 729 LKLCIKAKNTFDDVQFWVKAFGVVENVGALDAGTLAQNMQALSESVGQKIKENKQSTLLE 788

Query: 54  LNSRLSAPHFLSLTFPMILLQLR-IWESDASSGR 86
           +N+  +  +   L     L Q++ +W+ + SSGR
Sbjct: 789 INNAKADINQKFLQVQESLSQIKTVWQGNVSSGR 822


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.130    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,853,921
Number of Sequences: 539616
Number of extensions: 718621
Number of successful extensions: 1694
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1691
Number of HSP's gapped (non-prelim): 4
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)