BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034306
         (98 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
          Length = 654

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 12  SSQDHEAASTEKKYGGLVPKKKPLISQDNG 41
           SS     A+ +K  G L+PK KPL+ Q+ G
Sbjct: 126 SSDPDYLAAVDKWLGVLLPKMKPLLYQNGG 155


>pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
           Crocea
 pdb|3QPM|B Chain B, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
           Crocea
 pdb|3QPM|C Chain C, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
           Crocea
 pdb|3QPM|D Chain D, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
           Crocea
 pdb|3QPM|E Chain E, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
           Crocea
          Length = 240

 Score = 26.2 bits (56), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 21  TEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQNSLVAIETLRPKLQRTPHQ 80
           T +K GGL P K PL+S D  H    S D+ +Y +  G     L  I+  +  L++    
Sbjct: 131 TPRKQGGLGPMKIPLLS-DLTHQI--SKDYGVYLEDQGHTLRGLFIIDE-KGVLRQITMN 186

Query: 81  QLPPRR 86
            LP  R
Sbjct: 187 DLPVGR 192


>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
           Hydratase Short Chain 1, Echs1
 pdb|2HW5|B Chain B, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
           Hydratase Short Chain 1, Echs1
 pdb|2HW5|C Chain C, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
           Hydratase Short Chain 1, Echs1
 pdb|2HW5|D Chain D, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
           Hydratase Short Chain 1, Echs1
 pdb|2HW5|E Chain E, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
           Hydratase Short Chain 1, Echs1
 pdb|2HW5|F Chain F, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa)
           Hydratase Short Chain 1, Echs1
          Length = 286

 Score = 25.4 bits (54), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 2   ADYNRGQDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWAL 52
           AD    Q+  S QD  ++   K +  L   KKP+I+  NG+AF    + A+
Sbjct: 94  ADIKEMQNL-SFQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAM 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,319,791
Number of Sequences: 62578
Number of extensions: 119467
Number of successful extensions: 207
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 8
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)