BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034306
         (98 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0UAM9|CFD1_PHANO Cytosolic Fe-S cluster assembly factor CFD1 OS=Phaeosphaeria
           nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
           GN=CFD1 PE=3 SV=1
          Length = 297

 Score = 29.6 bits (65), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 30  PKKKPLISQDNGHAFFDSADWALYKQGAGVNQNSLVAIETLRPKLQRTPHQQLP 83
           PKK  ++ Q      +   D+ L     G +   +  +ETL      TPH  LP
Sbjct: 118 PKKTAMVRQFLTDVLWPKVDYLLIDTPPGTSDEHISLLETLLKNTSTTPHASLP 171


>sp|P50504|PUR6_SCHOC Phosphoribosylaminoimidazole carboxylase OS=Schwanniomyces
           occidentalis GN=ADE2 PE=3 SV=1
          Length = 557

 Score = 28.9 bits (63), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 8   QDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQNSLVAI 67
           +D  S  D+    + K    L+PK+KPL+S   G      +D  +   GA + +   V  
Sbjct: 367 EDCESRLDYIIGKSSKIPENLIPKEKPLVSIIMG----SDSDLPVMSVGANILKRFGVPF 422

Query: 68  ETLRPKLQRTPHQ 80
           E       RTPH+
Sbjct: 423 ELTIVSAHRTPHR 435


>sp|P79058|IGO1_SCHPO mRNA stability protein mug134 OS=Schizosaccharomyces pombe
          (strain 972 / ATCC 24843) GN=mug134 PE=2 SV=4
          Length = 139

 Score = 28.9 bits (63), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 27 GLVPKKKPLISQD--NGHAFFDSADWALYKQG 56
          G +P++K L+ Q    G  +FDS D+AL K G
Sbjct: 42 GRLPQRKDLLVQKLQQGRKYFDSGDYALNKAG 73


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,549,010
Number of Sequences: 539616
Number of extensions: 1494140
Number of successful extensions: 2206
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2205
Number of HSP's gapped (non-prelim): 5
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)