Query         034306
Match_columns 98
No_of_seqs    101 out of 121
Neff          3.4 
Searched_HMMs 46136
Date          Fri Mar 29 12:02:16 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034306hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF04667 Endosulfine:  cAMP-reg  99.9 3.9E-28 8.4E-33  165.1   6.2   81   11-92      4-85  (86)
  2 KOG4076 Regulator of ATP-sensi  99.8   5E-21 1.1E-25  138.2   4.5   82   14-96     31-116 (121)
  3 cd07756 CYTH-like_Pase_CHAD Un  50.5     7.3 0.00016   29.2   0.8   16   43-58     38-53  (197)
  4 cd07374 CYTH-like_Pase CYTH-li  39.1      12 0.00026   26.4   0.4   16   43-58     37-52  (174)
  5 PLN00216 predicted protein; Pr  38.2      21 0.00046   23.7   1.5   22   66-87      5-26  (69)
  6 KOG3940 Uncharacterized conser  35.6      29 0.00063   29.5   2.2   18   40-62     48-65  (351)
  7 COG3733 TynA Cu2+-containing a  31.9      12 0.00025   34.0  -0.7   15   42-56    316-330 (654)
  8 PF01179 Cu_amine_oxid:  Copper  28.6      13 0.00029   31.3  -0.9   17   42-58     73-89  (413)
  9 COG3025 Uncharacterized conser  25.3      32 0.00069   30.0   0.8   16   43-58     39-54  (432)
 10 PF04834 Adeno_E3_14_5:  Early   24.8      53  0.0011   23.3   1.7   16   76-91     73-88  (97)
 11 COG4919 Ribosomal protein S30   23.7      41 0.00089   21.6   0.9   26   52-86      7-32  (54)
 12 PF03569 Peptidase_C8:  Peptida  23.2      38 0.00083   26.8   0.8   21   73-93     33-53  (212)
 13 PF04504 DUF573:  Protein of un  22.7      24 0.00052   24.0  -0.3   29   18-46     58-90  (98)
 14 PF10802 DUF2540:  Protein of u  21.8      57  0.0012   22.2   1.3   16   13-28     46-61  (75)
 15 cd07762 CYTH-like_Pase_1 Uncha  20.4      46   0.001   24.4   0.7   16   43-58     32-47  (180)

No 1  
>PF04667 Endosulfine:  cAMP-regulated phosphoprotein/endosulfine conserved region;  InterPro: IPR006760 This endosulphine family includes cAMP-regulated phosphoprotein 19 (ARPP-19), alpha endosulphine and protein Igo1.  No function has yet been assigned to ARPP-19 []. Endosulphine is the endogenous ligand for the ATP-dependent potassium channels which occupy a key position in the control of insulin release from the pancreatic beta cell by coupling cell polarity to metabolism []. Igo1 is required for initiation of G0 program. In the absence of stimulatory signals, cells may enter into a reversible quiescence (or G0) state that is typically characterised by low metabolic activity, including low rates of protein synthesis and transcription. Igo proteins associate with the mRNA decapping activator Dhh1, sheltering newly expressed mRNAs from degradation via the 5'-3' mRNA decay pathway, and thereby enabling their proper translation during initiation of the G0 program []. 
Probab=99.95  E-value=3.9e-28  Score=165.15  Aligned_cols=81  Identities=41%  Similarity=0.548  Sum_probs=73.4

Q ss_pred             CCCchHHHHHHHHHhCCCCCCCCccccccccccccchhhHHHHhhcCCCCCCchhhhhhcCCCCCCCCC-CCCCCCCCCc
Q 034306           11 YSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQNSLVAIETLRPKLQRTPH-QQLPPRRPAC   89 (98)
Q Consensus        11 ~~s~~~eE~~l~~KYG~L~pKK~~Li~K~~eRkyFDSaD~aL~Kag~~~~q~~~~~~e~l~pKl~~Tp~-q~lp~Rr~~~   89 (98)
                      .++..+||++|++|||+|++++..|++++++|||||||||||+||++.+++.+. +++.+.|++.+|++ +++++|+++|
T Consensus         4 ~~~~~~eE~kl~~kYG~l~~~~~~L~kkl~~rKYFDSgDyam~Ka~~~~~~~~~-~~~~~~~~~~~p~~v~~~~~~~~~~   82 (86)
T PF04667_consen    4 ISSLSEEEAKLKAKYGKLPPKKKLLQKKLQKRKYFDSGDYAMAKAGKKSSQGPG-PTGKLPPPLPNPPHVSQSIPRRPTT   82 (86)
T ss_pred             cccccHHHHHHHHHcCCCCCCchhhhhhhccccccchHHHHHHHhhcccccCcC-cCcCCCCCCCCCcccccccCCCCCC
Confidence            456778999999999999998777888899999999999999999998777655 88999999999998 9999999999


Q ss_pred             ccC
Q 034306           90 TSG   92 (98)
Q Consensus        90 ~s~   92 (98)
                      +|+
T Consensus        83 ~s~   85 (86)
T PF04667_consen   83 TSP   85 (86)
T ss_pred             CCC
Confidence            986


No 2  
>KOG4076 consensus Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82  E-value=5e-21  Score=138.24  Aligned_cols=82  Identities=26%  Similarity=0.370  Sum_probs=67.6

Q ss_pred             chHHHHHHHHHhCCCCCCCCccccc-cccccccchhhHHHHhhcCCCCCCchhhhhh--cCC-CCCCCCCCCCCCCCCCc
Q 034306           14 QDHEAASTEKKYGGLVPKKKPLISQ-DNGHAFFDSADWALYKQGAGVNQNSLVAIET--LRP-KLQRTPHQQLPPRRPAC   89 (98)
Q Consensus        14 ~~~eE~~l~~KYG~L~pKK~~Li~K-~~eRkyFDSaD~aL~Kag~~~~q~~~~~~e~--l~p-Kl~~Tp~q~lp~Rr~~~   89 (98)
                      +.++|.++++.||+|+-+++-|.++ +++|||||||||||.|||+.+.+.+.+...+  +.+ .+++|| +.+|.||++.
T Consensus        31 ~epkl~~ky~~~GklP~~sd~l~krlQkgrKyFDSGDYam~KAk~~~~~~~~~~~~k~~~~t~~~~~~~-e~~p~rk~S~  109 (121)
T KOG4076|consen   31 EEPKLKKKYPSYGKLPGGSDFLRKRLQKGRKYFDSGDYAMAKAKMKNKQLPTANPDKNNLPTGDHIPTP-EDLPARKPSL  109 (121)
T ss_pred             hCHHHHHHHHHhCCCCcccHHHHHHHHhcccccccchHHHHHhhcccccCCccccccCCCCCCCCCcCc-cccccccccc
Confidence            3456788888999999886555565 8889999999999999999999988876555  333 899999 8999999999


Q ss_pred             ccCCCCC
Q 034306           90 TSGRDNH   96 (98)
Q Consensus        90 ~s~~~~~   96 (98)
                      .+.+.++
T Consensus       110 ~s~~~~~  116 (121)
T KOG4076|consen  110 VSPSANG  116 (121)
T ss_pred             cCCCccc
Confidence            9976654


No 3  
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=50.46  E-value=7.3  Score=29.24  Aligned_cols=16  Identities=38%  Similarity=0.762  Sum_probs=14.0

Q ss_pred             cccchhhHHHHhhcCC
Q 034306           43 AFFDSADWALYKQGAG   58 (98)
Q Consensus        43 kyFDSaD~aL~Kag~~   58 (98)
                      -|||+.|+.|.+++..
T Consensus        38 ~YfDTpd~~L~~~~~a   53 (197)
T cd07756          38 TYFDTPDLALRRAGIA   53 (197)
T ss_pred             eeeeCcChHHHhCCCE
Confidence            5999999999998753


No 4  
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=39.13  E-value=12  Score=26.42  Aligned_cols=16  Identities=31%  Similarity=0.623  Sum_probs=13.3

Q ss_pred             cccchhhHHHHhhcCC
Q 034306           43 AFFDSADWALYKQGAG   58 (98)
Q Consensus        43 kyFDSaD~aL~Kag~~   58 (98)
                      -|||+.|++|.+.+..
T Consensus        37 ~YfDT~d~~l~~~~lr   52 (174)
T cd07374          37 IYFDTPDLRLARAGLR   52 (174)
T ss_pred             eEecCccchhhhCCcE
Confidence            4999999998887743


No 5  
>PLN00216 predicted protein; Provisional
Probab=38.18  E-value=21  Score=23.67  Aligned_cols=22  Identities=41%  Similarity=0.688  Sum_probs=14.9

Q ss_pred             hhhhcCCCCCCCCCCCCCCCCC
Q 034306           66 AIETLRPKLQRTPHQQLPPRRP   87 (98)
Q Consensus        66 ~~e~l~pKl~~Tp~q~lp~Rr~   87 (98)
                      +..+++|--.+-|||.||.|-.
T Consensus         5 aakkipplekrpphqplpartn   26 (69)
T PLN00216          5 AAKKIPPLEKRPPHQPLPARTN   26 (69)
T ss_pred             ccccCCCcccCCCCCCCCccCC
Confidence            3345566666778899988743


No 6  
>KOG3940 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.56  E-value=29  Score=29.52  Aligned_cols=18  Identities=33%  Similarity=0.495  Sum_probs=13.5

Q ss_pred             ccccccchhhHHHHhhcCCCCCC
Q 034306           40 NGHAFFDSADWALYKQGAGVNQN   62 (98)
Q Consensus        40 ~eRkyFDSaD~aL~Kag~~~~q~   62 (98)
                      +-|++|||+     |++++..+.
T Consensus        48 k~Rk~FDsr-----rqrA~g~d~   65 (351)
T KOG3940|consen   48 KVRKMFDSR-----RQRAGGDDS   65 (351)
T ss_pred             hhhhccccc-----cccCCcccC
Confidence            468999997     677766655


No 7  
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.90  E-value=12  Score=34.02  Aligned_cols=15  Identities=27%  Similarity=0.381  Sum_probs=12.1

Q ss_pred             ccccchhhHHHHhhc
Q 034306           42 HAFFDSADWALYKQG   56 (98)
Q Consensus        42 RkyFDSaD~aL~Kag   56 (98)
                      +.+||+|||-|+.-.
T Consensus       316 K~~fD~GeYglG~l~  330 (654)
T COG3733         316 KNAFDSGEYGLGTLT  330 (654)
T ss_pred             hhcccccccCccccc
Confidence            469999999887743


No 8  
>PF01179 Cu_amine_oxid:  Copper amine oxidase, enzyme domain;  InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2   Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ].  This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=28.61  E-value=13  Score=31.29  Aligned_cols=17  Identities=24%  Similarity=0.382  Sum_probs=12.4

Q ss_pred             ccccchhhHHHHhhcCC
Q 034306           42 HAFFDSADWALYKQGAG   58 (98)
Q Consensus        42 RkyFDSaD~aL~Kag~~   58 (98)
                      +.|||+|||-||....+
T Consensus        73 ~~~~D~geyG~G~~~~~   89 (413)
T PF01179_consen   73 KNAFDSGEYGLGSMANS   89 (413)
T ss_dssp             -EEEHHHHTTTTTTBE-
T ss_pred             cccccccccccCccccc
Confidence            57999999988775543


No 9  
>COG3025 Uncharacterized conserved protein [Function unknown]
Probab=25.33  E-value=32  Score=29.95  Aligned_cols=16  Identities=25%  Similarity=0.532  Sum_probs=14.3

Q ss_pred             cccchhhHHHHhhcCC
Q 034306           43 AFFDSADWALYKQGAG   58 (98)
Q Consensus        43 kyFDSaD~aL~Kag~~   58 (98)
                      -|||+.|++|.++++.
T Consensus        39 ~YyDTpd~~L~~~~~g   54 (432)
T COG3025          39 IYYDTPDNWLRRHDMG   54 (432)
T ss_pred             hhcCCchHHHHhCCce
Confidence            5999999999998864


No 10 
>PF04834 Adeno_E3_14_5:  Early E3 14.5 kDa protein;  InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=24.84  E-value=53  Score=23.32  Aligned_cols=16  Identities=38%  Similarity=0.746  Sum_probs=13.1

Q ss_pred             CCCCCCCCCCCCCccc
Q 034306           76 RTPHQQLPPRRPACTS   91 (98)
Q Consensus        76 ~Tp~q~lp~Rr~~~~s   91 (98)
                      +.|+.+.|||.|+.+|
T Consensus        73 ~~p~P~pppr~PSviS   88 (97)
T PF04834_consen   73 PIPQPEPPPRPPSVIS   88 (97)
T ss_pred             CCCCCCCCCCCCCeee
Confidence            6776788999999876


No 11 
>COG4919 Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]
Probab=23.72  E-value=41  Score=21.64  Aligned_cols=26  Identities=35%  Similarity=0.546  Sum_probs=17.7

Q ss_pred             HHhhcCCCCCCchhhhhhcCCCCCCCCCCCCCCCC
Q 034306           52 LYKQGAGVNQNSLVAIETLRPKLQRTPHQQLPPRR   86 (98)
Q Consensus        52 L~Kag~~~~q~~~~~~e~l~pKl~~Tp~q~lp~Rr   86 (98)
                      |.|||.--+|         -||+.+-+.+.+|||.
T Consensus         7 LTKAGKVR~Q---------TPkipaK~kkn~~PR~   32 (54)
T COG4919           7 LTKAGKVRKQ---------TPKIPAKQKKNYPPRL   32 (54)
T ss_pred             cccccchhcc---------CCCCCccccccCChhH
Confidence            5677765555         4677777777788875


No 12 
>PF03569 Peptidase_C8:  Peptidase family C8;  InterPro: IPR005315 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold:  Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases.   In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding.  Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad [].  This group of cysteine peptidases belong to MEROPS peptidase family C8 (clan CA). The peptidases are encoded by the double stranded viral RNAs belonging to the genus Hypovirus.
Probab=23.25  E-value=38  Score=26.84  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=17.8

Q ss_pred             CCCCCCCCCCCCCCCCcccCC
Q 034306           73 KLQRTPHQQLPPRRPACTSGR   93 (98)
Q Consensus        73 Kl~~Tp~q~lp~Rr~~~~s~~   93 (98)
                      ..+++|.|||-|||++.+-.+
T Consensus        33 Eakeap~Q~LvprRstfv~nh   53 (212)
T PF03569_consen   33 EAKEAPRQQLVPRRSTFVDNH   53 (212)
T ss_pred             hcccchhhhcccccccccccC
Confidence            567899999999999987654


No 13 
>PF04504 DUF573:  Protein of unknown function, DUF573;  InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=22.65  E-value=24  Score=24.01  Aligned_cols=29  Identities=31%  Similarity=0.494  Sum_probs=18.9

Q ss_pred             HHHHHHHhCCCCCC----CCccccccccccccc
Q 034306           18 AASTEKKYGGLVPK----KKPLISQDNGHAFFD   46 (98)
Q Consensus        18 E~~l~~KYG~L~pK----K~~Li~K~~eRkyFD   46 (98)
                      =.+|++||.....+    ..+-..+.|+|+-|+
T Consensus        58 irrLK~Ky~~~~~k~~~g~~~~~~~~hd~~~f~   90 (98)
T PF04504_consen   58 IRRLKKKYRNAVKKSKNGKDPSFSKPHDRRLFE   90 (98)
T ss_pred             HHHHHHHHHHHhhhcccCcCCCCCCHhHHHHHH
Confidence            46799999987755    123455667766664


No 14 
>PF10802 DUF2540:  Protein of unknown function (DUF2540);  InterPro: IPR024254 This family of proteins with unknown function appears to be restricted to Methanococcus.; PDB: 2EFV_A.
Probab=21.83  E-value=57  Score=22.19  Aligned_cols=16  Identities=25%  Similarity=0.370  Sum_probs=11.8

Q ss_pred             CchHHHHHHHHHhCCC
Q 034306           13 SQDHEAASTEKKYGGL   28 (98)
Q Consensus        13 s~~~eE~~l~~KYG~L   28 (98)
                      ...++|..+.+|||+.
T Consensus        46 tLs~~E~~IieKyGKa   61 (75)
T PF10802_consen   46 TLSDEEEKIIEKYGKA   61 (75)
T ss_dssp             E--HHHHHHHHHHGGG
T ss_pred             EecHHHHHHHHHHhHH
Confidence            4567899999999953


No 15 
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=20.42  E-value=46  Score=24.43  Aligned_cols=16  Identities=38%  Similarity=0.706  Sum_probs=13.8

Q ss_pred             cccchhhHHHHhhcCC
Q 034306           43 AFFDSADWALYKQGAG   58 (98)
Q Consensus        43 kyFDSaD~aL~Kag~~   58 (98)
                      -|||+.|+.|.+++..
T Consensus        32 ~Yfdtp~~~l~~~~~a   47 (180)
T cd07762          32 YYFDTPDFALKKKHSA   47 (180)
T ss_pred             EEEeCCCHHHHhCCcE
Confidence            5999999999998753


Done!