Query 034306
Match_columns 98
No_of_seqs 101 out of 121
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 20:44:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gfg_A BH2851; antiparallel ba 28.0 15 0.00052 25.8 0.4 16 43-58 39-54 (193)
2 3tj7_A GBAA_1210 protein; stru 25.1 18 0.00063 26.0 0.4 16 43-58 39-54 (195)
3 3bhd_A Thtpase, thiamine triph 23.9 20 0.00068 26.0 0.4 15 43-57 57-71 (234)
4 3v85_A CYTH-like phosphatase; 23.4 18 0.00063 25.3 0.2 16 43-58 35-50 (210)
5 1wa7_B TIP, hypothetical 28.7 22.2 37 0.0013 18.2 1.2 13 75-89 5-17 (26)
6 2efv_A Hypothetical protein MJ 18.7 45 0.0015 22.5 1.3 17 12-28 58-74 (92)
7 1ksi_A Copper amine oxidase; P 18.3 20 0.00067 30.9 -0.7 14 42-55 291-304 (642)
8 1spu_A Copper amine oxidase; o 17.3 21 0.00073 31.0 -0.7 14 42-55 379-392 (727)
9 2aca_A Putative adenylate cycl 16.5 36 0.0012 23.7 0.4 15 43-57 46-60 (189)
10 1w6g_A Phenylethylamine oxidas 16.2 20 0.00067 31.0 -1.2 15 42-56 292-306 (646)
No 1
>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}
Probab=27.99 E-value=15 Score=25.77 Aligned_cols=16 Identities=31% Similarity=0.690 Sum_probs=14.2
Q ss_pred cccchhhHHHHhhcCC
Q 034306 43 AFFDSADWALYKQGAG 58 (98)
Q Consensus 43 kyFDSaD~aL~Kag~~ 58 (98)
-|||+.|..|.+++..
T Consensus 39 ~YfDTpd~~L~~~~~a 54 (193)
T 2gfg_A 39 HYFETDDFQLKKQSSA 54 (193)
T ss_dssp EEEECTTCHHHHTTCE
T ss_pred EeeeCCCHHHHhCCCE
Confidence 5999999999998864
No 2
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Probab=25.10 E-value=18 Score=26.00 Aligned_cols=16 Identities=19% Similarity=0.561 Sum_probs=14.2
Q ss_pred cccchhhHHHHhhcCC
Q 034306 43 AFFDSADWALYKQGAG 58 (98)
Q Consensus 43 kyFDSaD~aL~Kag~~ 58 (98)
-|||+.|..|.+++..
T Consensus 39 ~YfDTpd~~L~~~~~~ 54 (195)
T 3tj7_A 39 HYFETPNSSLKEAGSA 54 (195)
T ss_dssp EEEECTTCHHHHTTCE
T ss_pred EEEeCCcHhHHhCCCE
Confidence 5999999999999864
No 3
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=23.86 E-value=20 Score=26.03 Aligned_cols=15 Identities=13% Similarity=0.552 Sum_probs=13.3
Q ss_pred cccchhhHHHHhhcC
Q 034306 43 AFFDSADWALYKQGA 57 (98)
Q Consensus 43 kyFDSaD~aL~Kag~ 57 (98)
-|||+.|+.|.+++.
T Consensus 57 ~YfDTpd~~L~~~~~ 71 (234)
T 3bhd_A 57 TYYDTPELSLMQADH 71 (234)
T ss_dssp EEEECTTCHHHHTTC
T ss_pred EEeeCCChHHHhCCc
Confidence 699999999998864
No 4
>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}
Probab=23.36 E-value=18 Score=25.33 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=14.0
Q ss_pred cccchhhHHHHhhcCC
Q 034306 43 AFFDSADWALYKQGAG 58 (98)
Q Consensus 43 kyFDSaD~aL~Kag~~ 58 (98)
-|||+.|+.|.+++..
T Consensus 35 ~y~dt~~~~l~~~~~~ 50 (210)
T 3v85_A 35 TFFDTPKNDLSLRRAV 50 (210)
T ss_dssp EEEECTTCHHHHTTEE
T ss_pred EEEeCCCHHHHhCCcE
Confidence 5999999999998754
No 5
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=22.19 E-value=37 Score=18.21 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=7.9
Q ss_pred CCCCCCCCCCCCCCc
Q 034306 75 QRTPHQQLPPRRPAC 89 (98)
Q Consensus 75 ~~Tp~q~lp~Rr~~~ 89 (98)
+|+| +||+|--.+
T Consensus 5 ~P~P--~LPpRPaNL 17 (26)
T 1wa7_B 5 MPTP--PLPPRPANL 17 (26)
T ss_dssp CCCC--CCCCCTTST
T ss_pred CCCC--CCCCCcccc
Confidence 4555 688875433
No 6
>2efv_A Hypothetical protein MJ0366; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Methanocaldococcus jannaschii DSM2661} SCOP: a.43.1.12
Probab=18.70 E-value=45 Score=22.53 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=13.4
Q ss_pred CCchHHHHHHHHHhCCC
Q 034306 12 SSQDHEAASTEKKYGGL 28 (98)
Q Consensus 12 ~s~~~eE~~l~~KYG~L 28 (98)
....++|..+.+|||+.
T Consensus 58 itLsdeEe~IieKyGKa 74 (92)
T 2efv_A 58 ITLTEEEEVIIQRLGKS 74 (92)
T ss_dssp EECCHHHHHHHHHHGGG
T ss_pred EEecHHHHHHHHHHhHH
Confidence 34567899999999953
No 7
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=18.28 E-value=20 Score=30.87 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=10.9
Q ss_pred ccccchhhHHHHhh
Q 034306 42 HAFFDSADWALYKQ 55 (98)
Q Consensus 42 RkyFDSaD~aL~Ka 55 (98)
+.|||+|||-++..
T Consensus 291 k~~fD~GeyG~G~~ 304 (642)
T 1ksi_A 291 KTFFDSGEFGFGLS 304 (642)
T ss_dssp CEECHHHHHCTTTT
T ss_pred ceeeeccccCcccc
Confidence 47999999977543
No 8
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=17.32 E-value=21 Score=30.97 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=11.0
Q ss_pred ccccchhhHHHHhh
Q 034306 42 HAFFDSADWALYKQ 55 (98)
Q Consensus 42 RkyFDSaD~aL~Ka 55 (98)
+.|||+|||-+|..
T Consensus 379 k~~fD~GeyG~G~~ 392 (727)
T 1spu_A 379 KAYLDSGDYGMGTL 392 (727)
T ss_dssp CEECHHHHHCTTTT
T ss_pred ceeeeccCcCCccc
Confidence 47999999977443
No 9
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=16.49 E-value=36 Score=23.70 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=13.2
Q ss_pred cccchhhHHHHhhcC
Q 034306 43 AFFDSADWALYKQGA 57 (98)
Q Consensus 43 kyFDSaD~aL~Kag~ 57 (98)
-|||+.|+.|.+++.
T Consensus 46 ~YfDtp~~~L~~~~~ 60 (189)
T 2aca_A 46 WFYDTPQRTLTQQGK 60 (189)
T ss_dssp EEEECTTCHHHHTTC
T ss_pred EEEeCCCcchhhCCe
Confidence 599999999988875
No 10
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...
Probab=16.20 E-value=20 Score=30.99 Aligned_cols=15 Identities=13% Similarity=0.521 Sum_probs=11.9
Q ss_pred ccccchhhHHHHhhc
Q 034306 42 HAFFDSADWALYKQG 56 (98)
Q Consensus 42 RkyFDSaD~aL~Kag 56 (98)
+.|||+|||-+|...
T Consensus 292 k~afD~GeyG~G~~a 306 (646)
T 1w6g_A 292 QNYFDTGEYLVGQYA 306 (646)
T ss_dssp CEEECCCCCCGGGGB
T ss_pred ceeeeccCcCCcccc
Confidence 479999999886643
Done!